Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 71 of 226
Found at i:22717299 original size:14 final size:15
Alignment explanation
Indices: 22717280--22717317 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
22717270 CCAGAAAAGT
22717280 AAATCATTTTC-CAA
1 AAATCATTTTCTCAA
*
22717294 AAATCATTTTCTGAA
1 AAATCATTTTCTCAA
22717309 AAA-CATTTT
1 AAATCATTTT
22717318 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATCATTTTCTCAA
Found at i:22727412 original size:17 final size:18
Alignment explanation
Indices: 22727384--22727418 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22727374 TATTCATATC
*
22727384 TATTTTTGAAAATAAGAT
1 TATTTTTAAAAATAAGAT
22727402 TATTTTTAAAAATAAGA
1 TATTTTTAAAAATAAGA
22727419 AATTGAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TATTTTTAAAAATAAGAT
Found at i:22727559 original size:24 final size:25
Alignment explanation
Indices: 22727483--22727566 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
22727473 GTGGAAAAAT
*
22727483 GATGAATTGATGGTAAAATGCAAAG
1 GATGAATTGACGGTAAAATGCAAAG
22727508 GATGAATTGACGGTAAAATGCAAAG
1 GATGAATTGACGGTAAAATGCAAAG
* *
22727533 GATGAATTGACGGT-ATATGCAAGG
1 GATGAATTGACGGTAAAATGCAAAG
22727557 GATGAATTGA
1 GATGAATTGA
22727567 TGACAAATGT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 18 0.32
25 38 0.68
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.24
Consensus pattern (25 bp):
GATGAATTGACGGTAAAATGCAAAG
Found at i:22727732 original size:22 final size:21
Alignment explanation
Indices: 22727679--22727733 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
22727669 CTATTTAACC
* *
22727679 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCATTCACCT
* *
22727700 CCTATGAGTTTCCATTCAACCT
1 CTTATGGGTTTCCATTC-ACCT
*
22727722 TTTATGGGTTTC
1 CTTATGGGTTTC
22727734 TGTTAGCACT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (21 bp):
CTTATGGGTTTCCATTCACCT
Found at i:22729717 original size:22 final size:23
Alignment explanation
Indices: 22729692--22729748 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
22729682 TGCACTAATG
22729692 AACAGAGAGCACTA-AAGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
* *
22729714 AACAAAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
*
22729736 AACGGAGAGCACT
1 AACAGAGAGCACT
22729749 GCCGTGCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (23 bp):
AACAGAGAGCACTAGAAGTGCTA
Found at i:22730760 original size:5 final size:5
Alignment explanation
Indices: 22730750--22730818 Score: 138
Period size: 5 Copynumber: 13.8 Consensus size: 5
22730740 TGTTTGTTTT
22730750 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
22730800 TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATA
22730819 TACTTAACTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 64 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:22735037 original size:22 final size:22
Alignment explanation
Indices: 22735012--22735078 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
22735002 GGTTTTTTTA
22735012 ATATATTTTTATAATTTTTAAT
1 ATATATTTTTATAATTTTTAAT
*
22735034 ATATATTTTTATAATTTTTATT
1 ATATATTTTTATAATTTTTAAT
22735056 ATA-AGTTTTTGA-AA-TTTTAAT
1 ATATA-TTTTT-ATAATTTTTAAT
22735077 AT
1 AT
22735079 TTTTTGTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
21 9 0.22
22 31 0.76
23 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (22 bp):
ATATATTTTTATAATTTTTAAT
Found at i:22735157 original size:24 final size:25
Alignment explanation
Indices: 22735121--22735167 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
22735111 TTTTTATGTA
*
22735121 TTTTGAGATTTTTTTTTCAAATTATT
1 TTTTGAGATTTTTTATT-AAATTATT
22735147 TTTTGA-A-TTTTTATTAAATTA
1 TTTTGAGATTTTTTATTAAATTA
22735168 AAAGAATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 1 0.05
26 6 0.30
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (25 bp):
TTTTGAGATTTTTTATTAAATTATT
Found at i:22740757 original size:43 final size:42
Alignment explanation
Indices: 22740643--22740765 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 42
22740633 TTTAGGACGT
* *
22740643 TGGCATCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACA
1 TGGCATCGATATT-TGA-TTACGTGTAAGACCATGTCTGAGACA
* * * *
22740686 TCGACATCG-TATATGATTTCGTGTAAGACCCTGTCTGAGACA
1 T-GGCATCGATATTTGATTACGTGTAAGACCATGTCTGAGACA
* *
22740728 GTGGCATCGATATTTGATTACATGTAAGACCACGTCTG
1 -TGGCATCGATATTTGATTACGTGTAAGACCATGTCTG
22740766 GGACGTTGGC
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
42 29 0.45
43 28 0.44
44 7 0.11
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGGCATCGATATTTGATTACGTGTAAGACCATGTCTGAGACA
Found at i:22740776 original size:43 final size:43
Alignment explanation
Indices: 22740620--22740777 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
22740610 TCTGAGATGT
* * * *
22740620 GTGTAAGACCAAGTTTAGGACGTTGGCATCGAT-TTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTAC
* * * * * *
22740664 GTGTAAGACCATGTCTGGGACATCGACATCG-TATATGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
*
22740706 GTGTAAGACC-CTGTCTGAGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTAC
*
22740749 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
22740778 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 28 0.31
43 35 0.39
44 27 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:22741975 original size:16 final size:16
Alignment explanation
Indices: 22741954--22741995 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
22741944 AAATTTAGAA
22741954 GAATTTTTGAATTAGT
1 GAATTTTTGAATTAGT
*
22741970 GAATTTTGTGATTTAGT
1 GAATTTT-TGAATTAGT
22741987 GAATTTTTG
1 GAATTTTTG
22741996 TGATTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (16 bp):
GAATTTTTGAATTAGT
Found at i:22741996 original size:18 final size:17
Alignment explanation
Indices: 22741954--22742002 Score: 73
Period size: 18 Copynumber: 2.9 Consensus size: 17
22741944 AAATTTAGAA
*
22741954 GAATTTT-TGAATTAGT
1 GAATTTTGTGATTTAGT
22741970 GAATTTTGTGATTTAGT
1 GAATTTTGTGATTTAGT
22741987 GAATTTTTGTGATTTA
1 GAA-TTTTGTGATTTA
22742003 AAAAGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 7 0.23
17 11 0.37
18 12 0.40
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (17 bp):
GAATTTTGTGATTTAGT
Found at i:22742815 original size:46 final size:46
Alignment explanation
Indices: 22742748--22742976 Score: 404
Period size: 46 Copynumber: 5.0 Consensus size: 46
22742738 CATGGCAAAG
* *
22742748 TGTGAAAAGTAAGTATGGTGTTTCGGTGAAGAAAATCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
22742794 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
22742840 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
22742886 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
22742932 TGTGAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAG
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAG
22742977 GCAATGTGAA
Statistics
Matches: 176, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 176 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:22755651 original size:21 final size:21
Alignment explanation
Indices: 22755598--22755652 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
22755588 TATAGCCATT
*
22755598 TTTGAATTGATTGTTTTATTG
1 TTTGAATTGATTCTTTTATTG
* *
22755619 ATTG-ATTCGATTCTTTTGTTG
1 TTTGAATT-GATTCTTTTATTG
22755640 TTTGAATTGATTC
1 TTTGAATTGATTC
22755653 AAAGTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 22 0.79
22 3 0.11
ACGTcount: A:0.18, C:0.05, G:0.18, T:0.58
Consensus pattern (21 bp):
TTTGAATTGATTCTTTTATTG
Found at i:22762033 original size:21 final size:22
Alignment explanation
Indices: 22762007--22762053 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
22761997 CTCTGCTCAA
*
22762007 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
22762028 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
22762050 ACTC
1 ACTC
22762054 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:22765623 original size:17 final size:17
Alignment explanation
Indices: 22765579--22765632 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
22765569 TAAAAATTAT
*
22765579 AATTTTTAAGACATAAAA
1 AATTTTTAA-AAATAAAA
* *
22765597 AA-TATGAAAAATAAAA
1 AATTTTTAAAAATAAAA
22765613 AATTTTTAAAAATAAAA
1 AATTTTTAAAAATAAAA
22765630 AAT
1 AAT
22765633 AAAAAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 9 0.30
17 19 0.63
18 2 0.07
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (17 bp):
AATTTTTAAAAATAAAA
Found at i:22765634 original size:24 final size:25
Alignment explanation
Indices: 22765592--22765648 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
22765582 TTTTAAGACA
*
22765592 TAAAAAATATGAAAAATAAAAAATTT
1 TAAAAAATA-GAAAAATAAAAAATAT
*
22765618 TTAAAAATA-AAAAATAAAAAATAT
1 TAAAAAATAGAAAAATAAAAAATAT
22765642 TAAAAAA
1 TAAAAAA
22765649 ATATTGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 20 0.71
26 8 0.29
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (25 bp):
TAAAAAATAGAAAAATAAAAAATAT
Found at i:22770126 original size:43 final size:43
Alignment explanation
Indices: 22770065--22770338 Score: 449
Period size: 43 Copynumber: 6.3 Consensus size: 43
22770055 TCTGATGCGT
* *
22770065 GATTTCGTGTAAGACCATAACTGAGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
22770108 GATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
22770151 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
22770194 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
22770237 GATTTCGTGTAAGACCATAGCTGGGCTATTGACATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * **
22770280 GATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
22770323 GATTTCTATGTAAGAC
1 GATTTC-GTGTAAGAC
22770339 TATGTCTGGG
Statistics
Matches: 216, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
43 208 0.96
44 8 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:22773577 original size:91 final size:90
Alignment explanation
Indices: 22773418--22773621 Score: 239
Period size: 91 Copynumber: 2.3 Consensus size: 90
22773408 CTCTGTTTTG
* * * * * * ** *
22773418 TGGATAAACCACTAGTG-TTGCAGGTTAATACACTGCCATTAGTAGTGAGTATACAATGGGTTTG
1 TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
22773482 CAGATAAAAGTTGCCAATAAAAATTA
66 CAGATAAAAGTTGCCAAT-AAAATTA
* * *
22773508 TGGATAAACCACCAGTGTTTGCTGGTTAATACGCTACCAGTAGTTGTAAATACACAACAGGTTTA
1 TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
* ** *
22773573 CAGATAAAATTTGCCAATAAGTTTG
66 CAGATAAAAGTTGCCAATAAAATTA
*
22773598 TGGACAAACCACCAGTGTTTGCAG
1 TGGATAAACCACCAGTGTTTGCAG
22773622 ATAAACTACC
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
90 42 0.44
91 53 0.56
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (90 bp):
TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
CAGATAAAAGTTGCCAATAAAATTA
Found at i:22777224 original size:24 final size:24
Alignment explanation
Indices: 22777171--22777225 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
22777161 CCTTTTTTTT
*
22777171 ATTCAATTTTAATCCTTACTAAAA
1 ATTCACTTTTAATCCTTACTAAAA
*
22777195 ATTCACTTTTAGTCCTTACTAAAA
1 ATTCACTTTTAATCCTTACTAAAA
22777219 ATTCACT
1 ATTCACT
22777226 ACACATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTCACTTTTAATCCTTACTAAAA
Found at i:22777596 original size:27 final size:27
Alignment explanation
Indices: 22777544--22777597 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
22777534 TTGCTTAGTT
* *
22777544 TTAATAAAATATACATTTCATGCATTA
1 TTAATAAAATAAACATTTCATACATTA
*
22777571 TTAATTAAAATAAATATTTCA-ACATTA
1 TTAA-TAAAATAAACATTTCATACATTA
22777598 AAAAAAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (27 bp):
TTAATAAAATAAACATTTCATACATTA
Found at i:22778175 original size:21 final size:21
Alignment explanation
Indices: 22778149--22778190 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22778139 CTGCCAGTAA
*
22778149 GTTTGTGGATAAACCACCAGT
1 GTTTGTAGATAAACCACCAGT
*
22778170 GTTTGTAGATAAACTACCAGT
1 GTTTGTAGATAAACCACCAGT
22778191 AGGTTGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (21 bp):
GTTTGTAGATAAACCACCAGT
Found at i:22778184 original size:44 final size:43
Alignment explanation
Indices: 22778136--22778271 Score: 125
Period size: 44 Copynumber: 3.1 Consensus size: 43
22778126 TTGCAGATAA
* *
22778136 AAACTGCCAGTAAGTTTGTGGATAAACCACCAGTGTTTGTAGAT
1 AAACTACCAGTAAGTTTGTGGATGAACCACCA-TGTTTGTAGAT
* * * * *
22778180 AAACTACCAGT-AGGTTGTGAATGCACAACGCA--TTTGAAGAT
1 AAACTACCAGTAAGTTTGTGGATGAACCAC-CATGTTTGTAGAT
* *
22778221 AAAAGCTACAAGTAAGTTTGTGGATGAACCACCAATGTTTGTAAAT
1 -AAA-CTACCAGTAAGTTTGTGGATGAACCACC-ATGTTTGTAGAT
22778267 AAACT
1 AAACT
22778272 GTCAGTAGGT
Statistics
Matches: 71, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
41 8 0.11
42 3 0.04
43 21 0.30
44 29 0.41
45 3 0.04
46 7 0.10
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (43 bp):
AAACTACCAGTAAGTTTGTGGATGAACCACCATGTTTGTAGAT
Found at i:22778206 original size:87 final size:87
Alignment explanation
Indices: 22778060--22778346 Score: 340
Period size: 87 Copynumber: 3.3 Consensus size: 87
22778050 CCGAACACTC
* * * * * * * * *
22778060 AAGTTTATGGATGAACCACCATTGTTTGCAAATATACTGCCACTTGGTTGTGAATGCACAATGTA
1 AAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGAA
* * *
22778125 TTTGCAGATAAAAACTGCCAGT
66 TTTGAAGATAAAAGCTGCAAGT
* * * *
22778147 AAGTTTGTGGATAAACCACCAGTGTTTGTAGATAAACTACCAGTAGGTTGTGAATGCACAACGCA
1 AAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGAA
*
22778212 TTTGAAGATAAAAGCTACAAGT
66 TTTGAAGATAAAAGCTGCAAGT
* * * * *
22778234 AAGTTTGTGGATGAACCACCAATGTTTGTAAATAAACTGTCAGTAGGTTGTGAGTGCGCAACAAA
1 AAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGAA
* *
22778299 TTTGTAGATAAAAGCTGCTAGT
66 TTTGAAGATAAAAGCTGCAAGT
* *
22778321 AAATTCGTGGATAAACCACCAATGTT
1 AAGTTTGTGGATAAACCACCAATGTT
22778347 GCCAATTATT
Statistics
Matches: 170, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 170 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (87 bp):
AAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGAA
TTTGAAGATAAAAGCTGCAAGT
Found at i:22778487 original size:38 final size:38
Alignment explanation
Indices: 22778436--22778563 Score: 168
Period size: 38 Copynumber: 3.4 Consensus size: 38
22778426 ACAATATTGA
* *
22778436 AACAATAGACATGCTTAACGTGTATTCGATTCAACAGT
1 AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
* * **
22778474 AACAATAGACATGCTTATCATGTATTCGGCTCAATGGT
1 AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
*
22778512 AACAATAGACATGTTTAACATGTA-TCTGGTTCAACAGT
1 AACAATAGACATGCTTAACATGTATTC-GGTTCAACAGT
*
22778550 AACAATAGGCATGC
1 AACAATAGACATGC
22778564 AATCATTAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
37 2 0.03
38 74 0.97
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (38 bp):
AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
Found at i:22778866 original size:12 final size:12
Alignment explanation
Indices: 22778849--22778873 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22778839 TGAGTCACAC
22778849 TCTGTGCCCGTG
1 TCTGTGCCCGTG
22778861 TCTGTGCCCGTG
1 TCTGTGCCCGTG
22778873 T
1 T
22778874 AACTCTCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.32, T:0.36
Consensus pattern (12 bp):
TCTGTGCCCGTG
Found at i:22780311 original size:29 final size:29
Alignment explanation
Indices: 22780265--22780326 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
22780255 TTTTTCATAT
*
22780265 AATCACATATATAGACATGAATTAAATTC
1 AATCACATATATACACATGAATTAAATTC
22780294 AATCACATATATACACATGAATTAAATTC
1 AATCACATATATACACATGAATTAAATTC
22780323 AATC
1 AATC
22780327 TATAATAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.31
Consensus pattern (29 bp):
AATCACATATATACACATGAATTAAATTC
Found at i:22790909 original size:72 final size:72
Alignment explanation
Indices: 22790786--22791024 Score: 392
Period size: 72 Copynumber: 3.3 Consensus size: 72
22790776 AAAATCATAT
**
22790786 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
22790849 GACCAAAC
65 AACCAAAC
* *
22790857 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAACATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
22790922 ACCAAAC
66 ACCAAAC
*
22790929 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
22790994 ACCAAAC
66 ACCAAAC
*
22791001 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
22791025 TTTAGCATTG
Statistics
Matches: 156, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
71 25 0.16
72 131 0.84
ACGTcount: A:0.55, C:0.16, G:0.06, T:0.23
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:22798123 original size:48 final size:47
Alignment explanation
Indices: 22798068--22798231 Score: 112
Period size: 48 Copynumber: 3.6 Consensus size: 47
22798058 AAGGAGGAAG
22798068 TACTAGCAGTTTAATAATCTGCAAACATTGGTGGTTTATCCATAAACT
1 TACTAGCAGTTT-ATAATCTGCAAACATTGGTGGTTTATCCATAAACT
* * * * * *
22798116 TACTAGCAATTT-TCATTTGCAAACACATT-GT-G--CATTCAT-AACC
1 TACTAGCAGTTTATAATCTGC-AA-ACATTGGTGGTTTATCCATAAACT
* * * *
22798159 TACTGGCAGTGTATTAA-CTTGCAAACACTGGTGGTTTGTCCATAAACT
1 TACTAGCAGTTTA-TAATC-TGCAAACATTGGTGGTTTATCCATAAACT
*
22798207 TACTAGCAGCTTT-T-ATCAGCAAACA
1 TACTAGCAG-TTTATAATCTGCAAACA
22798232 CGTTGTGCAT
Statistics
Matches: 85, Mismatches: 19, Indels: 26
0.65 0.15 0.20
Matches are distributed among these distances:
43 16 0.19
44 9 0.11
45 6 0.07
46 15 0.18
47 10 0.12
48 27 0.32
49 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (47 bp):
TACTAGCAGTTTATAATCTGCAAACATTGGTGGTTTATCCATAAACT
Found at i:22798229 original size:91 final size:91
Alignment explanation
Indices: 22798086--22798297 Score: 264
Period size: 91 Copynumber: 2.3 Consensus size: 91
22798076 GTTTAATAAT
* **
22798086 CTGCAAACATTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATTTGCAAACACATTGTGCAT
1 CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATCAGCAAACACATTGTGCAT
* ** *
22798151 TCATAACCTACTGGCAGTGTATTAAC
66 TCACAACCTACTGGCAGCATATAAAC
* * * *
22798177 TTGCAAACACTGGTGGTTTGTCCATAAACTTACTAGCAGCTTTT-ATCAGCAAACACGTTGTGCA
1 CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCA-ATTTTCATCAGCAAACACATTGTGCA
*
22798241 TTCACAACCTATTGGCAGCATATAAAC
65 TTCACAACCTACTGGCAGCATATAAAC
** * *
22798268 CTGCAAACACTGAAGGTTCATCCACAAACT
1 CTGCAAACACTGGTGGTTTATCCATAAACT
22798298 GGAGTGTCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
91 98 0.96
92 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (91 bp):
CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATCAGCAAACACATTGTGCAT
TCACAACCTACTGGCAGCATATAAAC
Found at i:22805067 original size:92 final size:91
Alignment explanation
Indices: 22804910--22805118 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
22804900 TTGATTTTAG
* * *
22804910 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
22804975 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
22805002 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
22805066 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
22805094 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
22805119 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:22805081 original size:24 final size:25
Alignment explanation
Indices: 22805046--22805093 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
22805036 TTATGAAATT
22805046 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
22805070 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
22805094 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:22805289 original size:16 final size:16
Alignment explanation
Indices: 22805268--22805312 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
22805258 TTATTAAATT
*
22805268 ATATATTTTAATTATA
1 ATATATTTTAATAATA
22805284 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
*
22805299 ATTATATTTAAATA
1 A-TATATTTTAATA
22805313 TGATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 10 0.40
16 9 0.36
17 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:22805318 original size:16 final size:16
Alignment explanation
Indices: 22805269--22805309 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
22805259 TATTAAATTA
*
22805269 TATATTTTAATTATAA-
1 TATA-TTTAATAATAAT
22805285 TATATTTAATAATAAT
1 TATATTTAATAATAAT
22805301 TATATTTAA
1 TATATTTAA
22805310 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTTAATAATAAT
Found at i:22805417 original size:157 final size:157
Alignment explanation
Indices: 22805243--22805559 Score: 580
Period size: 157 Copynumber: 2.0 Consensus size: 157
22805233 AGAAGAATAT
*
22805243 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATATTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTT
* *
22805308 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
22805373 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
22805400 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTT
22805465 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
22805530 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
22805557 TAA
1 TAA
22805560 GGGTATTCTA
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 154 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATATTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:22805440 original size:18 final size:17
Alignment explanation
Indices: 22805412--22805446 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22805402 ATTATTAAGA
*
22805412 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22805429 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22805447 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22808115 original size:95 final size:95
Alignment explanation
Indices: 22807952--22808139 Score: 322
Period size: 95 Copynumber: 2.0 Consensus size: 95
22807942 AACCGTTAAA
* * *
22807952 GAGTTTTCATATGTGTTTCCCGATGAGTTACTGAGGTTATCTCCAGATCGTGAGGGAGAGTTCAG
1 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
22808017 AATTGAATTGTTGCCAAGAATCGCTCCAGT
66 AATTGAATTGTTGCCAAGAATCGCTCCAGT
* *
22808047 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTTCAGGTCGTGAGGGAGAATTCAG
1 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
*
22808112 AATTGAATTGTTTCCAAGAATCGCTCCA
66 AATTGAATTGTTGCCAAGAATCGCTCCA
22808140 ATGTCCATTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 87 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (95 bp):
GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
AATTGAATTGTTGCCAAGAATCGCTCCAGT
Found at i:22824251 original size:24 final size:25
Alignment explanation
Indices: 22824204--22824251 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
22824194 TTTTATTACT
* * *
22824204 ATTTTCTTTTTTTTTTACTCAAATG
1 ATTTTCTTTTCTTTTTAATAAAATG
22824229 ATTTT-TTTTCTTTTTAATAAAAT
1 ATTTTCTTTTCTTTTTAATAAAAT
22824252 ATATATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (25 bp):
ATTTTCTTTTCTTTTTAATAAAATG
Found at i:22825272 original size:31 final size:32
Alignment explanation
Indices: 22825237--22825305 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
22825227 ATTAGTACCT
* *
22825237 AAATTTGAGATTTTTTT-TTAATTTGGTACTG
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
* * *
22825268 AAATTTGACCTTTTTTTCTTAAGTTGGTAGTT
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
22825300 AAATTT
1 AAATTT
22825306 TTTGGGATCC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (32 bp):
AAATTTGACATTTTTTTCTTAAGTTGGTACTG
Found at i:22826813 original size:21 final size:21
Alignment explanation
Indices: 22826766--22826816 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
22826756 AAGTTTTTCC
* * *
22826766 AAAATAAATTTAAAAATTTTA
1 AAAAAAAATTGAAAAATTCTA
22826787 AAAAAAAATTGAAAAA-TCTA
1 AAAAAAAATTGAAAAATTCTA
*
22826807 AAGAAAAATT
1 AAAAAAAATT
22826817 TCAACTGAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAAAAAATTGAAAAATTCTA
Found at i:22835394 original size:19 final size:19
Alignment explanation
Indices: 22835370--22835429 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
22835360 AAAGTTTAGA
22835370 AAATTTGTCGACTTGTGAT
1 AAATTTGTCGACTTGTGAT
** * *
22835389 AAATTT-TAAAGTT-T-AG
1 AAATTTGTCGACTTGTGAT
22835405 AAATTTGTCGACTTGTGAT
1 AAATTTGTCGACTTGTGAT
22835424 AAATTT
1 AAATTT
22835430 TTGGATGTGA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 7 0.23
17 5 0.17
18 5 0.17
19 13 0.43
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (19 bp):
AAATTTGTCGACTTGTGAT
Found at i:22835416 original size:35 final size:36
Alignment explanation
Indices: 22835348--22835430 Score: 143
Period size: 35 Copynumber: 2.3 Consensus size: 36
22835338 CATGGATTGG
22835348 GTGA-AAATTATTAAAGTTTAGAAAATTTGTCGACTT
1 GTGATAAATT-TTAAAGTTTAGAAAATTTGTCGACTT
22835384 GTGATAAATTTTAAAGTTTAG-AAATTTGTCGACTT
1 GTGATAAATTTTAAAGTTTAGAAAATTTGTCGACTT
22835419 GTGATAAATTTT
1 GTGATAAATTTT
22835431 TGGATGTGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
35 26 0.57
36 15 0.33
37 5 0.11
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (36 bp):
GTGATAAATTTTAAAGTTTAGAAAATTTGTCGACTT
Found at i:22836837 original size:39 final size:39
Alignment explanation
Indices: 22836786--22836876 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
22836776 TCAAAATAGT
*
22836786 AAAACTACTCCTATTCACCCTTTACTTCCTATAATATAA
1 AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
* * * *
22836825 AAAATTACTCCTATTCATCCTCTACTTCTTATAATATAG
1 AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
22836864 AAAACTACTCCTA
1 AAAACTACTCCTA
22836877 AAATAAGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.36, C:0.26, G:0.01, T:0.36
Consensus pattern (39 bp):
AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
Found at i:22842282 original size:34 final size:34
Alignment explanation
Indices: 22842233--22842297 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
22842223 TCCTTCTAGC
*
22842233 ATACATATAATGTATTCAACAATTGATAATAGTT
1 ATACATATAACGTATTCAACAATTGATAATAGTT
* *
22842267 ATACGTATAACGTATTCAACAATTGGTAATA
1 ATACATATAACGTATTCAACAATTGATAATA
22842298 ACTATACAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (34 bp):
ATACATATAACGTATTCAACAATTGATAATAGTT
Found at i:22842304 original size:34 final size:34
Alignment explanation
Indices: 22842233--22842305 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
22842223 TCCTTCTAGC
* **
22842233 ATACATATAATGTATTCAACAATTGATAATAGTT
1 ATACATATAACGTATTCAACAATTGATAATAACT
* *
22842267 ATACGTATAACGTATTCAACAATTGGTAATAACT
1 ATACATATAACGTATTCAACAATTGATAATAACT
22842301 ATACA
1 ATACA
22842306 AGCATAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (34 bp):
ATACATATAACGTATTCAACAATTGATAATAACT
Found at i:22842832 original size:60 final size:57
Alignment explanation
Indices: 22842763--22842930 Score: 196
Period size: 60 Copynumber: 2.9 Consensus size: 57
22842753 TTAAGGTTTA
*
22842763 ACTTTTTTTTAGTCCAAGTTAGTCCTTGAACTTGACAATTATTCTCACATTGAGCTTGG
1 ACTTTTTTTTA-TCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTGAGCTT-G
* *
22842822 ACTTCTTTTTTTATCCAAGTTAGTCTTTTAACTT-AGCAATTATTCTCACATTGAGCTTG
1 AC-T-TTTTTTTATCCAAGTTAGTCATTGAACTTGA-CAATTATTCTCACATTGAGCTTG
** * * * *
22842881 A-AATTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTG
1 ACTTTTTTTTATCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTG
22842931 GAGGCATAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
56 39 0.41
57 1 0.01
59 5 0.05
60 42 0.44
61 8 0.08
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (57 bp):
ACTTTTTTTTATCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTGAGCTTG
Found at i:22842918 original size:56 final size:57
Alignment explanation
Indices: 22842767--22842930 Score: 179
Period size: 56 Copynumber: 2.8 Consensus size: 57
22842757 GGTTTAACTT
* **
22842767 TTTTTTAGTCCAAGTTAGTCCTTGAACTTGACAATTATTCTCACATTGAGCTTGGACTTCT
1 TTTTTTA-TCCAAGTTAGTCATTGAAC-TGACAATTATTCTCACATTGAGCTTGGA--TAA
* * *
22842828 TTTTTTATCCAAGTTAGTCTTTTAACTTAGCAATTATTCTCACATTGAGCTT-GA-AA
1 TTTTTTATCCAAGTTAGTCATTGAACTGA-CAATTATTCTCACATTGAGCTTGGATAA
* * *
22842884 TTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTG
1 TTTTTTATCCAAGTTAGTCATTGAACT-GACAATTATTCTCACATTG
22842931 GAGGCATAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
56 39 0.43
57 1 0.01
59 4 0.04
60 39 0.43
61 7 0.08
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.44
Consensus pattern (57 bp):
TTTTTTATCCAAGTTAGTCATTGAACTGACAATTATTCTCACATTGAGCTTGGATAA
Found at i:22844951 original size:27 final size:27
Alignment explanation
Indices: 22844896--22844975 Score: 67
Period size: 27 Copynumber: 2.9 Consensus size: 27
22844886 ACATAAGGCC
**
22844896 ATAACAGTCATTCCATCTCCTA-GGG-GT
1 ATAACAGTCATTTTA-C-CCTATGGGTGT
22844923 ATAACAGTCATTTTACCCTATGGGTGT
1 ATAACAGTCATTTTACCCTATGGGTGT
**
22844950 ATTTC-GATCATTTTACCCTATAGGGT
1 ATAACAG-TCATTTTACCCTAT-GGGT
22844976 ATTTCAATCA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
25 4 0.09
26 5 0.11
27 32 0.71
28 4 0.09
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
ATAACAGTCATTTTACCCTATGGGTGT
Found at i:22844987 original size:53 final size:53
Alignment explanation
Indices: 22844930--22845062 Score: 187
Period size: 53 Copynumber: 2.5 Consensus size: 53
22844920 GGTATAACAG
*
22844930 TCATTTTACCCTATGGGTGTATTTCGATCATTTTACCCTATA-GGGTATTTCAA
1 TCATTTTACCCTATGGG-GTATTTCGATCATTTTACCCTACAGGGGTATTTCAA
* * *
22844983 TCATTTTACTCTACAGGGGTATTTCGATCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTA-TGGGGTATTTCGATCATTTTACCCTACAGGGGTATTTCAA
*
22845037 TCATTTTACCCTATAAGGGTATTTCG
1 TCATTTTACCCTAT-GGGGTATTTCG
22845063 GCCTAACGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 35 0.50
54 35 0.50
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTACAGGGGTATTTCAA
Found at i:22845012 original size:27 final size:27
Alignment explanation
Indices: 22844930--22845062 Score: 189
Period size: 27 Copynumber: 5.0 Consensus size: 27
22844920 GGTATAACAG
*
22844930 TCATTTTACCCTA-TGGGTGTATTTCGA
1 TCATTTTACCCTACAGGG-GTATTTCGA
* *
22844957 TCATTTTACCCTATA-GGGTATTTCAA
1 TCATTTTACCCTACAGGGGTATTTCGA
*
22844983 TCATTTTACTCTACAGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTATTTCGA
22845010 TCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTACAGGGGTATTTCGA
* *
22845037 TCATTTTACCCTATAAGGGTATTTCG
1 TCATTTTACCCTACAGGGGTATTTCG
22845063 GCCTAACGTG
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.22
27 75 0.78
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGA
Found at i:22865514 original size:15 final size:15
Alignment explanation
Indices: 22865496--22865528 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22865486 CAAATGCCAA
22865496 AATAATAAATACAAC
1 AATAATAAATACAAC
*
22865511 AATAATAAATACATC
1 AATAATAAATACAAC
22865526 AAT
1 AAT
22865529 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:22865950 original size:29 final size:31
Alignment explanation
Indices: 22865905--22865963 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
22865895 GTCTAAATAC
*
22865905 AAAAATATTTATTAAAAAAATAAA-ATATAG
1 AAAAATATTCATTAAAAAAATAAATATATAG
22865935 AAAAATATTCA-TAAAAAAATAAATATATA
1 AAAAATATTCATTAAAAAAATAAATATATA
22865964 TACATATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (31 bp):
AAAAATATTCATTAAAAAAATAAATATATAG
Found at i:22865994 original size:27 final size:30
Alignment explanation
Indices: 22865945--22866011 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 30
22865935 AAAAATATTC
* *
22865945 ATAAAAAAATAAATATATATACATATGTAG
1 ATAAAATAATAAATATATATACATATATAG
*
22865975 ATAAAATAAT-AATA-AT-TACATATATAT
1 ATAAAATAATAAATATATATACATATATAG
22866002 ATAAAATAAT
1 ATAAAATAAT
22866012 TACATTATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.56
28 2 0.06
29 4 0.12
30 9 0.26
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
ATAAAATAATAAATATATATACATATATAG
Found at i:22866212 original size:6 final size:6
Alignment explanation
Indices: 22866201--22866232 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
22866191 GCGGCGGACC
22866201 AAATAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AA
22866233 TGTGTAGCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:22867689 original size:44 final size:44
Alignment explanation
Indices: 22867609--22867723 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 44
22867599 CTAATCCACT
* * *
22867609 CCACTACAACTT-AGGGAGATAGGA-TTTTTTCATTCAGTCTGCC
1 CCACTACAACTTCAGGGAGATAAGACTTTCTT-ATTCAGTCTACC
* * *
22867652 CCACTATAATTTCAAGGGA-ATAAGACTTTCTTATTCAGTCTACT
1 CCACTACAACTTC-AGGGAGATAAGACTTTCTTATTCAGTCTACC
22867696 CCACTACAACTTCAGGGAGATAAGACTT
1 CCACTACAACTTCAGGGAGATAAGACTT
22867724 ACGCGATCTG
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
43 15 0.25
44 35 0.58
45 10 0.17
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
CCACTACAACTTCAGGGAGATAAGACTTTCTTATTCAGTCTACC
Found at i:22868383 original size:88 final size:89
Alignment explanation
Indices: 22868259--22868465 Score: 301
Period size: 88 Copynumber: 2.3 Consensus size: 89
22868249 TGGGGTCATC
* * * * *
22868259 GATCTACTTCACTGTCGGTGTAGAAAGGCAAGATCTGCTATTTTTAACCTGTTCCGCTGCAACCT
1 GATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
*
22868324 AGGGAGGCAAGGTTGGTGTCTT-A
66 AGGGAGGCAAGGCTGGTGTCTTCA
* *
22868347 GATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCC
1 GATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
22868412 AGGGAGGCAAGGCTGGTGTCTTCA
66 AGGGAGGCAAGGCTGGTGTCTTCA
* * *
22868436 -ATCTGCTTCGCTATTGGTGCAGGAAGGCAA
1 GATCTGCTTCACTGTCGGTGCAGGAAGGCAA
22868466 CCTGCTCCGC
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 105 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (89 bp):
GATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
AGGGAGGCAAGGCTGGTGTCTTCA
Found at i:22868420 original size:44 final size:44
Alignment explanation
Indices: 22868284--22868422 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 44
22868274 CGGTGTAGAA
* * *
22868284 AGGCAAGATCTGCTATTTTTAACCTGTTCCGCTGCAACCTAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGGG
* * * * * * * **** *
22868328 AGGCAAGGT-TGGT-GTCTTAGATCTGCTTCACTGTCGGTACAGGA
1 AGGCAAGATCTGCTATTTTTA-ACCTGCTCCGCTGT-AACCCAGGG
22868372 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGGG
22868416 AGGCAAG
1 AGGCAAG
22868423 GCTGGTGTCT
Statistics
Matches: 64, Mismatches: 27, Indels: 8
0.65 0.27 0.08
Matches are distributed among these distances:
42 4 0.06
43 12 0.19
44 30 0.47
45 14 0.22
46 4 0.06
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGGG
Found at i:22868525 original size:72 final size:72
Alignment explanation
Indices: 22868392--22868537 Score: 229
Period size: 72 Copynumber: 2.0 Consensus size: 72
22868382 TGCTATTTTT
* * *
22868392 AACCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTATTGGTGCA
1 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTACTTCACTATTGGTGCA
22868457 GGAAGGC
66 GGAAGGC
* * **
22868464 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTTTTGGTTTA
1 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTACTTCACTATTGGTGCA
22868529 GGAAGGC
66 GGAAGGC
22868536 AA
1 AA
22868538 GATCTGTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (72 bp):
AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCAATCTACTTCACTATTGGTGCA
GGAAGGC
Found at i:22868575 original size:160 final size:160
Alignment explanation
Indices: 22868304--22868625 Score: 464
Period size: 160 Copynumber: 2.0 Consensus size: 160
22868294 TGCTATTTTT
* * * *
22868304 AACCTGTTCCGCTGCAACCTAGGGAGGCAAGGTTGGTGTCTTAGATCTGCTTCACTGTCGGTACA
1 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTAGATCTACTTCACTGTCGGTACA
* * * *
22868369 GGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTT
66 GGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTT
* **
22868434 CAATCTGCTTCGCTATTGGTGCAGGAAGGC
131 CAATCTACTTCGCTACCGGTGCAGGAAGGC
* * * **
22868464 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTTTTGGTTTA
1 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTAGATCTACTTCACTGTCGGTACA
* *
22868529 GGAAGGCAAGATCTGTTATCTTTAACCTGCTTCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTT
66 GGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTT
* *
22868594 CGATCTACTTCGCTGCCGGTGCAGGAAGGC
131 CAATCTACTTCGCTACCGGTGCAGGAAGGC
22868624 AA
1 AA
22868626 GATCTGTTAT
Statistics
Matches: 142, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
160 142 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (160 bp):
AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTAGATCTACTTCACTGTCGGTACA
GGAAGGCAAGATCTGCTATCTTTAACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTT
CAATCTACTTCGCTACCGGTGCAGGAAGGC
Found at i:22868620 original size:88 final size:88
Alignment explanation
Indices: 22868464--22868638 Score: 269
Period size: 88 Copynumber: 2.0 Consensus size: 88
22868454 GCAGGAAGGC
* * *** **
22868464 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTTTTGGTTTA
1 AACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGCCGGTGCA
22868529 GGAAGGCAAGATCTGTTATCTTT
66 GGAAGGCAAGATCTGTTATCTTT
* *
22868552 AACCTGCTTCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGCCGGTGCA
1 AACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGCCGGTGCA
22868617 GGAAGGCAAGATCTGTTATCTT
66 GGAAGGCAAGATCTGTTATCTT
22868639 CACTGATCTG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 78 1.00
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.27
Consensus pattern (88 bp):
AACCTGCTCCGCAGCAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGCCGGTGCA
GGAAGGCAAGATCTGTTATCTTT
Found at i:22872456 original size:24 final size:22
Alignment explanation
Indices: 22872416--22872460 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
22872406 TATATTTCAA
22872416 AAAGAAAAAAAAACAAATAAAT
1 AAAGAAAAAAAAACAAATAAAT
*
22872438 AAAGAATAATAAAACCAAATAAA
1 AAAGAA-AA-AAAAACAAATAAA
22872461 ATTAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 2 0.10
24 12 0.60
ACGTcount: A:0.78, C:0.07, G:0.04, T:0.11
Consensus pattern (22 bp):
AAAGAAAAAAAAACAAATAAAT
Found at i:22873599 original size:16 final size:16
Alignment explanation
Indices: 22873569--22873619 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
22873559 AATTAATTGA
*
22873569 TTTATT-GTTATTATT
1 TTTATTAGTCATTATT
22873584 TTTATTAGTCATTATT
1 TTTATTAGTCATTATT
* *
22873600 ATTATTAGTCTTTTATT
1 TTTATTAGTC-ATTATT
22873617 TTT
1 TTT
22873620 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 6 0.20
16 17 0.57
17 7 0.23
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (16 bp):
TTTATTAGTCATTATT
Found at i:22873626 original size:7 final size:8
Alignment explanation
Indices: 22873610--22873637 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
22873600 ATTATTAGTC
22873610 TTTTATTT
1 TTTTATTT
22873618 TTTTATTT
1 TTTTATTT
22873626 TTTTATTT
1 TTTTATTT
22873634 TTTT
1 TTTT
22873638 CTCTTAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTATTT
Found at i:22881157 original size:14 final size:15
Alignment explanation
Indices: 22881133--22881173 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
22881123 TTTTAGTCAA
22881133 AAAAAATGGAAAAA-C
1 AAAAAA-GGAAAAAGC
*
22881148 AAAAAAGGAAAAAGG
1 AAAAAAGGAAAAAGC
22881163 AAAAAA-GAAAA
1 AAAAAAGGAAAA
22881174 TGGAGAGGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.02
Consensus pattern (15 bp):
AAAAAAGGAAAAAGC
Found at i:22882511 original size:44 final size:43
Alignment explanation
Indices: 22882414--22882796 Score: 201
Period size: 44 Copynumber: 8.8 Consensus size: 43
22882404 AAGAGTTCTA
* * * * *
22882414 GATCTTATCTCCCTAAGATTACAGCGGATTAGATT-GAAGCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTAAAATC-AG
* * **
22882457 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATCAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTAAAATC-AG
* * ***
22882502 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCATCAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTAAAATCAG
* * **
22882544 G-TCTTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTCA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGA-TTAA-AA--TCAG
* * * ** *
22882589 GATCTTATCTCCCTGAGATTATAGCGGAATAGACCAAAGAATTTTA-
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGA-TTAA-AA--TCAG
*** * * *
22882635 GATCTTATCTCCCTGAGATTACAACAGAGCAGATT-GAAGCTAG
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTAAAATC-AG
* * *
22882678 TAATCCTATCTCCCTGAGATTACAGTGGAGTAGATTAAAATAAAG
1 -GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTAAAAT-CAG
** * **
22882723 GATCTTATCTCTTTGA-AGTTACAGTAGAGTAGATT-GCATCAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTAAAATCAG
*
22882765 G-TCTTATCTCCCTGAGATTACAGTGGAATAGA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGA
22882797 CTGAAGAATT
Statistics
Matches: 260, Mismatches: 63, Indels: 35
0.73 0.18 0.10
Matches are distributed among these distances:
41 50 0.19
42 9 0.03
43 10 0.04
44 111 0.43
45 10 0.04
46 70 0.27
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (43 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTAAAATCAG
Found at i:22882618 original size:46 final size:46
Alignment explanation
Indices: 22882540--22882657 Score: 182
Period size: 46 Copynumber: 2.6 Consensus size: 46
22882530 GTAGATCGCA
* * * *
22882540 TCAGGTCTTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACCAAAGAATT
*
22882586 TCAGATCTTATCTCCCTGAGATTATAGCGGAATAGACCAAAGAATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACCAAAGAATT
*
22882632 TTAGATCTTATCTCCCTGAGATTACA
1 TCAGATCTTATCTCCCTGAGATTACA
22882658 ACAGAGCAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (46 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACCAAAGAATT
Found at i:22882795 original size:221 final size:221
Alignment explanation
Indices: 22882412--22882817 Score: 695
Period size: 221 Copynumber: 1.8 Consensus size: 221
22882402 TGAAGAGTTC
* * **
22882412 TAGATCTTATCTCCCTAAGATTACAGCGGATTAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
1 TAGATCTTATCTCCCTAAGATTACAACAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
* *
22882477 TACAGTGGAGCGGATTAAAATCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 TACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* *
22882542 AGGTCTTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGA
131 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAGATCTTATCTCCCTGAGA
22882607 TTATAGCGGAATAGACCAAAGAATTT
196 TTATAGCGGAATAGACCAAAGAATTT
*
22882633 TAGATCTTATCTCCCTGAGATTACAACAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
1 TAGATCTTATCTCCCTAAGATTACAACAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
* * *
22882698 TACAGTGGAGTAGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATTGCATC
66 TACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
*
22882763 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAATTACAGATCTTAT
131 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAGATCTTAT
22882818 TTTCCCTGGC
Statistics
Matches: 172, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
221 172 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (221 bp):
TAGATCTTATCTCCCTAAGATTACAACAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
TACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAGATCTTATCTCCCTGAGA
TTATAGCGGAATAGACCAAAGAATTT
Found at i:22882895 original size:50 final size:50
Alignment explanation
Indices: 22882841--22883424 Score: 442
Period size: 50 Copynumber: 11.7 Consensus size: 50
22882831 GCAGTGGAAT
* * *
22882841 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * ** * *
22882891 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCC-AGGTGATGCAGTGAAAC
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACAT--TGCAGTTAAAA
* *
22882941 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* ** * * * **
22882991 AGATTAAAGCTACAATAGTGAATCTTATTTCCCAGGA-AGTGCAGTGGAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCC-CGACATTGCAGTTAAAA
* *
22883041 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * * * * * * **
22883091 AGACTAAAGCCATAGCGGTGAGTGTTACTTCCCTGGCAATACAGTGAAGC
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* *
22883141 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * **** * * * * * **
22883191 GGATTAAAGTCACAATAACGAATCTCACTCTCTCAGCCAGTGCAG-TAGAGC
1 AGATTAAAGCCACAACGGTGAATCTTACT-TCCCCGACATTGCAGTTA-AAA
* *** * *
22883242 AGATTAAAGCCACAACGGTGAATCTTGCTTTTTCGACATTGTAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * ** * * * *
22883292 AGATTAAAGCTACAACAGTGAATCTTACTT-CCCAAGCGGTGTAATGGAACA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGA-CATTGCAGT-TAAAA
* *
22883343 A-ATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
22883392 AGATTAAAGCTACAGCGGCGAATCTTACTTCCC
1 AGATTAAAGCCACAACGGTGAATCTTACTTCCC
22883425 TGGCAGTGCA
Statistics
Matches: 398, Mismatches: 123, Indels: 26
0.73 0.22 0.05
Matches are distributed among these distances:
48 2 0.01
49 13 0.03
50 332 0.83
51 49 0.12
52 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
Found at i:22883003 original size:100 final size:101
Alignment explanation
Indices: 22882819--22883499 Score: 718
Period size: 100 Copynumber: 6.8 Consensus size: 101
22882809 AGATCTTATT
* * * *
22882819 TTCCCTGGC-AGTGCAGTGGAATAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGC
1 TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
22882883 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
66 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
* **
22882919 TCCCCAGGTGA-TGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
1 TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
* * *
22882983 AGTTAAAAAGATTAAAGCTACAATAGTGAATCTTAT
66 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
* *
22883019 TTCCCAGG-AAGTGCAGTGGAAA-AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTG
1 TTCCCAGGCAAGTGCAGT-GAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTG
* * * * * * * *
22883082 CAGTTAAAAAGACTAAAGCCATAGCGGTGAGTGTTAC
65 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
* * * * *
22883119 TTCCCTGGCAA-TACAGTGAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGC
1 TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
* * * *
22883183 AGTTAAAAGGATTAAAG-TCACAATAACGAATCTCAC
66 AGTTAAAAAGATTAAAGCT-ACAACAGCGAATCTTAC
* * * * ***
22883219 TCTCTCA-GCCAGTGCAGT-AGAGCAGATTAAAGCCACAACGGTGAATCTTGCTTTTTCGACATT
1 T-TCCCAGGCAAGTGCAGTGA-AACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATT
* * *
22883282 GTAGCTAAAAAGATTAAAGCTACAACAGTGAATCTTAC
64 GCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
* * * * * *
22883320 TTCCCAAGC-GGTGTAATGGAACAAATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
1 TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
* *
22883384 AGTTAAAAAGATTAAAGCTACAGCGGCGAATCTTAC
66 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
* * * * ** * **
22883420 TTCCCTGGC-AGTGCAGTGGAACGGATTAAAGCTACAAT-GACGAATCTTGCTTCCTCGACATCA
1 TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACATTG
**
22883483 CAGTTAAGCAGATTAAA
65 CAGTTAAAAAGATTAAA
22883500 ATTGTGAGTT
Statistics
Matches: 485, Mismatches: 83, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
99 4 0.01
100 390 0.80
101 90 0.19
102 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (101 bp):
TTCCCAGGCAAGTGCAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGC
AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
Found at i:22883761 original size:24 final size:21
Alignment explanation
Indices: 22883722--22883765 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
22883712 TATATTTCAA
22883722 AAAGAAAAAAAACAAATAAAT
1 AAAGAAAAAAAACAAATAAAT
22883743 AAAGAATAATAAAACCAAATAAA
1 AAAGAA-AA-AAAA-CAAATAAA
22883766 ATTAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 4 0.20
24 8 0.40
ACGTcount: A:0.77, C:0.07, G:0.05, T:0.11
Consensus pattern (21 bp):
AAAGAAAAAAAACAAATAAAT
Found at i:22888123 original size:15 final size:15
Alignment explanation
Indices: 22888105--22888137 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22888095 CAAATGCCTA
22888105 AATAATAAATACAAC
1 AATAATAAATACAAC
*
22888120 AATAATAAATACATC
1 AATAATAAATACAAC
22888135 AAT
1 AAT
22888138 GGCATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:22888542 original size:28 final size:30
Alignment explanation
Indices: 22888513--22888569 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22888503 ATATGTATAA
*
22888513 ATACAAAAATATTTATTAAAAAA-ATAAAAT
1 ATACAAAAATATTCA-TAAAAAATATAAAAT
*
22888543 ATAGAAAAATATTCATAAAAAATATAA
1 ATACAAAAATATTCATAAAAAATATAA
22888570 TTATATATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (30 bp):
ATACAAAAATATTCATAAAAAATATAAAAT
Found at i:22888819 original size:6 final size:6
Alignment explanation
Indices: 22888808--22888833 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22888798 GCGACGGACC
22888808 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
22888834 TGTGCAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:22891880 original size:19 final size:19
Alignment explanation
Indices: 22891847--22891894 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
22891837 TAAACAATTC
22891847 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
22891864 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
22891883 AATAATATAAAT
1 AATAATATAAAT
22891895 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:22897777 original size:59 final size:57
Alignment explanation
Indices: 22897702--22897899 Score: 145
Period size: 59 Copynumber: 3.3 Consensus size: 57
22897692 TTATTTTAAA
22897702 TTTTATTAA-ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTAT
1 TTTTA-TAATATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT
* * ** *
22897760 CTTTTATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-
1 -TTTTATAATATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTA
22897824 T
57 T
* * * * *
22897825 TATTA-AAT-T-ATATATTTTAATTATAATATATTTTATAATAATTATGTTAATTTAT
1 TTTTATAATATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT
*
22897880 ATTTTATAGTATCATATATT
1 -TTTTATAATATCATATATT
22897900 ATGATTTGAG
Statistics
Matches: 107, Mismatches: 17, Indels: 30
0.69 0.11 0.19
Matches are distributed among these distances:
54 13 0.12
55 7 0.07
56 5 0.05
57 4 0.04
58 4 0.04
59 23 0.21
60 8 0.07
61 8 0.07
62 1 0.01
63 6 0.06
64 5 0.05
65 6 0.06
66 17 0.16
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (57 bp):
TTTTATAATATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTAT
Found at i:22897808 original size:66 final size:64
Alignment explanation
Indices: 22897738--22897936 Score: 177
Period size: 66 Copynumber: 3.2 Consensus size: 64
22897728 AAATATATTT
22897738 AATATTAATTATTTCAAATTATCTTTTATAATATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAATATCATATATTATGATTTGAGTAAATTCATATAA
22897803 G
64 G
* * * * **
22897804 AATATTAATTATTAAGAATT-TTATTA-AAT-T-ATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAATATCATATATTATGATTTGAGTAAATTCATATAAG
* * * *
22897858 TATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAATATCATATATTATGATTTGAGTAAATTCATATAA
22897923 G
64 G
*
22897924 AATATTGATTATT
1 AATATTAATTATT
22897937 AAGAATTTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 29
0.68 0.13 0.20
Matches are distributed among these distances:
54 13 0.13
55 7 0.07
56 5 0.05
57 4 0.04
58 2 0.02
59 8 0.08
60 8 0.08
61 8 0.08
62 2 0.02
63 5 0.05
64 5 0.05
65 7 0.07
66 26 0.26
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAATATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:22897840 original size:61 final size:61
Alignment explanation
Indices: 22897773--22897960 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
22897763 TTATAATATC
22897773 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
22897834 ATATATTTTAATTAT-AATATATT-TTATAATAATTATGTTAA-T-TT-A-TATTTTA-TAGTAT
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AAT
*
22897892 C
61 T
*
22897893 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
22897954 ATATATT
1 ATATATT
22897961 TTAATTATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 3 0.03
58 4 0.04
59 29 0.30
60 16 0.17
61 36 0.38
62 4 0.04
63 4 0.04
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:22897840 original size:120 final size:120
Alignment explanation
Indices: 22897700--22897997 Score: 499
Period size: 120 Copynumber: 2.5 Consensus size: 120
22897690 AATTATTTTA
* * * *
22897700 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
22897764 TATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
22897820 AATTTTATTAAATTATATATTTTAATTATAATATATTTTATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
22897885 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
22897940 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
22897998 ATGATTAAAT
Statistics
Matches: 166, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 159 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAATATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:22897855 original size:16 final size:16
Alignment explanation
Indices: 22897834--22897876 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
22897824 TTATTAAATT
22897834 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
22897850 ATATATTTT-ATAATA
1 ATATATTTTAATTATA
*
22897865 AT-TATGTTAATT
1 ATATATTTTAATT
22897877 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:22897975 original size:16 final size:16
Alignment explanation
Indices: 22897954--22897995 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22897944 TTATTAAATT
*
22897954 ATATATTTTAATTATA
1 ATATATTTTAATAATA
22897970 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
22897985 AT-TATGTTTAA
1 ATATAT-TTTAA
22897996 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:22897980 original size:15 final size:15
Alignment explanation
Indices: 22897945--22897986 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22897935 TTAAGAATTT
*
22897945 TATTAAATTAT-ATA
1 TATTTAATTATAATA
22897959 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
22897973 TATTTAATAATAAT
1 TATTTAATTATAAT
22897987 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:22902997 original size:41 final size:41
Alignment explanation
Indices: 22902934--22903027 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
22902924 TGTTTTGTAG
* * * *
22902934 GTCTTGAGACTTAGGGGTTATGTTTCGAGACCTA-TC-CTCAT
1 GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGC-C-T
*
22902975 GTCTCGAGACTTAGGGGGTATGTCTAGATACCTAGTCGCCT
1 GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGCCT
22903016 GTCTCGAGACTT
1 GTCTCGAGACTT
22903028 TGGGTCTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 42 0.91
42 3 0.07
43 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (41 bp):
GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGCCT
Found at i:22906459 original size:19 final size:20
Alignment explanation
Indices: 22906408--22906459 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
22906398 TTTGGGTCTT
*
22906408 GGTCTCAATTTTTGGTTCTCA
1 GGTC-CAATTTTTGATTCTCA
* *
22906429 GTTCCAACTTTTGATT-TCA
1 GGTCCAATTTTTGATTCTCA
22906448 GGTCCAATTTTT
1 GGTCCAATTTTT
22906460 AAGTTCAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 13 0.50
20 10 0.38
21 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.48
Consensus pattern (20 bp):
GGTCCAATTTTTGATTCTCA
Found at i:22908470 original size:43 final size:43
Alignment explanation
Indices: 22908356--22908471 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
22908346 TATGCGTTTT
* * *
22908356 CATGTAAGACCACGTCTGGGACGTTGGCATCGACTTTTGTTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATCA
** *
22908399 TGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGA-TCTGTGATCA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACT-TGTGATCA
*
22908442 CATGTAAGACCACGTATGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
22908472 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.05
43 53 0.91
44 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATCA
Found at i:22922278 original size:587 final size:587
Alignment explanation
Indices: 22921166--22922343 Score: 2214
Period size: 587 Copynumber: 2.0 Consensus size: 587
22921156 AAAGAAAACT
* *
22921166 TAAAGTATGAAAACCTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGTCG
1 TAAAGTATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
22921231 TCGTCCTCAACCCAAGGTTAGCTGACGTTCCCGTGTTTAATTTCTATTATGTATACCAAAACACC
66 TCGTCCTCAACCCAAGGTTAGCTGACGTTCCCGTGTTTAATTTCTATTATGTATACCAAAACACC
*
22921296 CTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGGTACGACACCATAGTCTTTGTGTCACAACA
131 CTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGGTACGACACCATAGTATTTGTGTCACAACA
22921361 TTAACGACAGTATACGTAGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
196 TTAACGACAGTATACGTAGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
*
22921426 TTTTACTCATTATGTTGTGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
261 TTTTACTCATTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
* *
22921491 TATGCCTTTGAATGGTCTCCTGCACACTTACTAAGTATGTTAGCGTGCCTTCAGGCCTCATTCGG
326 TATACCTTTGAATGGTCTCCTGCACACTTACTAAGTATGTTAGCGTGCCTTCAAGCCTCATTCGG
22921556 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
391 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
22921621 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
456 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
*
22921686 ACACCAAATTATGACAGATCAAATTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
521 ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
22921751 AA
586 AA
22921753 TAAAGTATGAAAAACTATCATT-ATACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCC
1 TAAAGTATGAAAAACTATCATTCA-ACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCC
*
22921817 GTCGTCCTCAACCCAAGGTTAGCTGACGTTCTCGTGTTTAATTTCTATTATGTATACCAAAACAC
65 GTCGTCCTCAACCCAAGGTTAGCTGACGTTCCCGTGTTTAATTTCTATTATGTATACCAAAACAC
*
22921882 CCTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGTTACGACACCATAGTATTTGTGTCACAAC
130 CCTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGGTACGACACCATAGTATTTGTGTCACAAC
*
22921947 ATTAACGACAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGA
195 ATTAACGACAGTATACGTAGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGA
*
22922012 ATTTTTCTCATTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTC
260 ATTTTACTCATTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTC
22922077 TTATACCTTTGAATGGTCTCCTGCACACTTACTAAGTATGTTAGCGTGCCTTCAAGCCTCATTCG
325 TTATACCTTTGAATGGTCTCCTGCACACTTACTAAGTATGTTAGCGTGCCTTCAAGCCTCATTCG
22922142 GCCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACA
390 GCCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACA
* * *
22922207 TGACTAAAACATACTAAAATTTCTCGTAATTAGCCTCATTAAATATGAAAACTAGTTTAATCTGC
455 TGACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGC
22922272 TACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCA
520 TACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCA
22922337 AAA
585 AAA
22922340 TAAA
1 TAAA
22922344 ATAAAAGCAT
Statistics
Matches: 576, Mismatches: 14, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
586 1 0.00
587 575 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (587 bp):
TAAAGTATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
TCGTCCTCAACCCAAGGTTAGCTGACGTTCCCGTGTTTAATTTCTATTATGTATACCAAAACACC
CTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGGTACGACACCATAGTATTTGTGTCACAACA
TTAACGACAGTATACGTAGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
TTTTACTCATTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
TATACCTTTGAATGGTCTCCTGCACACTTACTAAGTATGTTAGCGTGCCTTCAAGCCTCATTCGG
CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
AA
Found at i:22925313 original size:21 final size:20
Alignment explanation
Indices: 22925285--22925323 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22925275 GAAATTAGGG
*
22925285 TTTGAAGAATTTTGAGATAA
1 TTTGAAGAATTTAGAGATAA
*
22925305 TTTGAAAGAGTTTAGAGAT
1 TTTG-AAGAATTTAGAGAT
22925324 TGAAAAGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (20 bp):
TTTGAAGAATTTAGAGATAA
Found at i:22938380 original size:17 final size:17
Alignment explanation
Indices: 22938348--22938381 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22938338 GATAAGTATA
**
22938348 TATTGTCATTGGATTTT
1 TATTGTCATTACATTTT
22938365 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
22938382 CATATTAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:22944913 original size:12 final size:12
Alignment explanation
Indices: 22944896--22944957 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
22944886 AATTTAATAG
22944896 ATTTAATATTAA
1 ATTTAATATTAA
22944908 ATTTAATA-TAA
1 ATTTAATATTAA
22944919 TATTT-ATATTGATA
1 -ATTTAATATT-A-A
22944933 AGTATT-ATATT-A
1 A-T-TTAATATTAA
22944945 ATTTAATATTAA
1 ATTTAATATTAA
22944957 A
1 A
22944958 GTGATTAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
10 2 0.05
11 12 0.29
12 17 0.40
13 2 0.05
14 2 0.05
15 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:22944952 original size:58 final size:58
Alignment explanation
Indices: 22944838--22944952 Score: 151
Period size: 58 Copynumber: 1.9 Consensus size: 58
22944828 AATGATTATC
*
22944838 TTAATATTAAATTAAATTAATATTTATCTTATAGAAAAATATTCTATTAATTTAATAGAT
1 TTAATATTAAATTAAATTAATATTTA--TTATAGAAAAATATTATATTAATTTAATAGAT
* * * *
22944898 TTAATATTAAATTTAATATAATATTTA-TATTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTAAAT-TAATATTTATTATAGAAAAATATTATATTAATTTAATA
22944953 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 24 0.49
60 16 0.33
61 9 0.18
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (58 bp):
TTAATATTAAATTAAATTAATATTTATTATAGAAAAATATTATATTAATTTAATAGAT
Found at i:22946700 original size:5 final size:5
Alignment explanation
Indices: 22946690--22946767 Score: 66
Period size: 5 Copynumber: 15.6 Consensus size: 5
22946680 CTTTAATATT
* * * ** *
22946690 TCATA TCATA TCATA TCATA TCATA ACGTA ACGGA TCATG TCATA TCATA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
* ***
22946740 TCATA CCATA TTGGA TCATA TCATA TCA
1 TCATA TCATA TCATA TCATA TCATA TCA
22946768 CATAATGTCC
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.35
Consensus pattern (5 bp):
TCATA
Found at i:22946734 original size:30 final size:30
Alignment explanation
Indices: 22946694--22946767 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
22946684 AATATTTCAT
*
22946694 ATCATATCATATCATATCATAACGTAACGG
1 ATCATATCATATCATATCATAACATAACGG
* * **
22946724 ATCATGTCATATCATATCATACCATATTGG
1 ATCATATCATATCATATCATAACATAACGG
22946754 ATCATATCATATCA
1 ATCATATCATATCA
22946768 CATAATGTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (30 bp):
ATCATATCATATCATATCATAACATAACGG
Found at i:22947750 original size:21 final size:22
Alignment explanation
Indices: 22947712--22947757 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
22947702 AAGAAGAAGG
22947712 AGAAAAGAAAAGAAAATAAAGA
1 AGAAAAGAAAAGAAAATAAAGA
*
22947734 AGAAAAGAAAA-AAAATAGAGA
1 AGAAAAGAAAAGAAAATAAAGA
22947755 AGA
1 AGA
22947758 GAGGGAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (22 bp):
AGAAAAGAAAAGAAAATAAAGA
Found at i:22952948 original size:14 final size:14
Alignment explanation
Indices: 22952929--22952967 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
22952919 TTACACACAT
22952929 ATATAAATATTATA
1 ATATAAATATTATA
22952943 ATAT-AA-A--ATA
1 ATATAAATATTATA
22952953 ATATAAATATTATA
1 ATATAAATATTATA
22952967 A
1 A
22952968 ACAATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 7 0.33
11 2 0.10
12 2 0.10
13 2 0.10
14 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAAATATTATA
Found at i:22952961 original size:16 final size:16
Alignment explanation
Indices: 22952927--22952968 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
22952917 TCTTACACAC
*
22952927 ATATATAAATATTATA
1 ATATATAAATAATATA
22952943 ATATA-AAATAATATAA
1 ATATATAAATAATAT-A
22952959 ATATTATAAA
1 ATA-TATAAA
22952969 CAATTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 9 0.41
17 2 0.09
18 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATATAAATAATATA
Found at i:22953950 original size:17 final size:16
Alignment explanation
Indices: 22953908--22953954 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
22953898 ACTTATTCAC
22953908 TTTAATATTAAATTAA
1 TTTAATATTAAATTAA
* *
22953924 TATAAGTATTAGATTAAA
1 TTTAA-TATTAAATT-AA
22953942 TTTAATATTAAAT
1 TTTAATATTAAAT
22953955 CTATTAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 4 0.16
17 15 0.60
18 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
TTTAATATTAAATTAA
Found at i:22956825 original size:26 final size:26
Alignment explanation
Indices: 22956789--22956843 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
22956779 TACACTTAGA
*
22956789 AATATCCCTAAAAGTGTCGTATAAGG
1 AATATCCCTAAAAGTGTCATATAAGG
22956815 AATATCCCTAAAAGTGTCATATAAGG
1 AATATCCCTAAAAGTGTCATATAAGG
22956841 AAT
1 AAT
22956844 CAACTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (26 bp):
AATATCCCTAAAAGTGTCATATAAGG
Found at i:22959156 original size:42 final size:42
Alignment explanation
Indices: 22959077--22959253 Score: 248
Period size: 42 Copynumber: 4.2 Consensus size: 42
22959067 TCCAGCACTT
* * * * *
22959077 AGCCTGCTAGACATATAGTTTGA-AATGTTTCAACGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
22959118 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
* * * *
22959160 AGCCTACTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
* *
22959202 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATTGGCAATA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
22959244 AGCCTGCTAG
1 AGCCTGCTAG
22959254 GCGCTAAGCC
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 20 0.17
42 100 0.83
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (42 bp):
AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
Found at i:22959205 original size:84 final size:83
Alignment explanation
Indices: 22959077--22959253 Score: 273
Period size: 84 Copynumber: 2.1 Consensus size: 83
22959067 TCCAGCACTT
* * *
22959077 AGCCTGCTAGACATATAGTTTGAAATGTTTCAACGGCATTAAGCCTGCTAGACGTAAAGTCTGAT
1 AGCCTGCTAGACATAAAGTCTGAAATATTTCAACGGCATTAAGCCTGCTAGACGTAAAGTCTGAT
*
22959142 ATTGTTTCATCGGCATTA
66 ATTGTTTCATCGGCAATA
* * *
22959160 AGCCTACTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
1 AGCCTGCTAGACATAAAGTCTGAAA-TATTTCAACGGCATTAAGCCTGCTAGACGTAAAGTCTGA
*
22959225 TATTGTTTCATTGGCAATA
65 TATTGTTTCATCGGCAATA
22959244 AGCCTGCTAG
1 AGCCTGCTAG
22959254 GCGCTAAGCC
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 21 0.25
84 63 0.75
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (83 bp):
AGCCTGCTAGACATAAAGTCTGAAATATTTCAACGGCATTAAGCCTGCTAGACGTAAAGTCTGAT
ATTGTTTCATCGGCAATA
Found at i:22970111 original size:6 final size:6
Alignment explanation
Indices: 22970102--22970156 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
22970092 AATTACACTC
22970102 TTTATT TTTA-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
22970149 TTTATT TT
1 TTTATT TT
22970157 GTAGGTAGAC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.10
6 43 0.90
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:22970432 original size:22 final size:22
Alignment explanation
Indices: 22970401--22970448 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
22970391 AGAAAAAAAA
22970401 CCTAACCTTTCACCCATCAAAT
1 CCTAACCTTTCACCCATCAAAT
* * *
22970423 CCTAAGCTTTCACCTATCACAT
1 CCTAACCTTTCACCCATCAAAT
22970445 CCTA
1 CCTA
22970449 GCCATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.40, G:0.02, T:0.29
Consensus pattern (22 bp):
CCTAACCTTTCACCCATCAAAT
Found at i:22973430 original size:12 final size:12
Alignment explanation
Indices: 22973413--22973437 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22973403 ATGCAATATA
22973413 TCCTTCATTATT
1 TCCTTCATTATT
22973425 TCCTTCATTATT
1 TCCTTCATTATT
22973437 T
1 T
22973438 TTTGTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (12 bp):
TCCTTCATTATT
Found at i:22978823 original size:42 final size:42
Alignment explanation
Indices: 22978742--22978915 Score: 233
Period size: 42 Copynumber: 4.2 Consensus size: 42
22978732 GACACTTAGT
* * * ** *
22978742 CTGCTAGACATATAGTCTGA-AATGTTTCGTCGGCATTAAGT
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
22978783 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
* * *
22978825 CTGCTAGACGTAAAGTCTAAAATTATTTCACCGGCATTAAGC
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
* * *
22978867 CTGCTAAACGTAAAGTCTGATATTGTTTCACTGGCAATAAGC
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
22978909 CTGCTAG
1 CTGCTAG
22978916 GCGCTAAGCC
Statistics
Matches: 116, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 18 0.16
42 98 0.84
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (42 bp):
CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
Found at i:22982700 original size:43 final size:43
Alignment explanation
Indices: 22982637--22982820 Score: 269
Period size: 43 Copynumber: 4.3 Consensus size: 43
22982627 TTGGGATTCA
* *
22982637 TGTAAGACTATAGCTAGGCTATTGGCATCAATTTGAGATTTCG
1 TGTAAGACCATAGCTGGGCTATTGGCATCAATTTGAGATTTCG
* **
22982680 TGTAAGACCATAGTTGGGCTATTGGCATTGATTTGAGATTTCG
1 TGTAAGACCATAGCTGGGCTATTGGCATCAATTTGAGATTTCG
**
22982723 TGTAAGACCATAGCTGGGCTATTGGCATTGATTTGAGATTTCG
1 TGTAAGACCATAGCTGGGCTATTGGCATCAATTTGAGATTTCG
** *
22982766 TGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGATTTCCA
1 TGTAAGACCATAGCTGGGCTATTGGCATCAATTTGAGATTT-CG
22982810 TGTAAGACCAT
1 TGTAAGACCAT
22982821 GATTGGGACA
Statistics
Matches: 129, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 117 0.91
44 12 0.09
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATTGGCATCAATTTGAGATTTCG
Found at i:22982737 original size:86 final size:86
Alignment explanation
Indices: 22982583--22982820 Score: 284
Period size: 86 Copynumber: 2.8 Consensus size: 86
22982573 TCCAAAGTCG
** * * * * *
22982583 ATTTGAGATCCCGTATAAGATCATA-TCTGGGATA-TGGCAATGATTTGGGA-TTCATGTAAGAC
1 ATTTGAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATTGATTTGAGATTTCATGTAAGAC
*
22982645 TATAGCTAGGCTATTGGCATCA
65 CATAGCTAGGCTATTGGCATCA
*
22982667 ATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATTTGAGATTTCGTGTAAGACC
1 ATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATTTGAGATTTCATGTAAGACC
* **
22982732 ATAGCTGGGCTATTGGCATTG
66 ATAGCTAGGCTATTGGCATCA
* ** **
22982753 ATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGATTTCCATGTAAGAC
1 ATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATTTGAGATTT-CATGTAAGAC
22982818 CAT
65 CAT
22982821 GATTGGGACA
Statistics
Matches: 132, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
84 27 0.20
85 15 0.11
86 78 0.59
87 12 0.09
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (86 bp):
ATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATTGATTTGAGATTTCATGTAAGACC
ATAGCTAGGCTATTGGCATCA
Found at i:22982838 original size:129 final size:127
Alignment explanation
Indices: 22982582--22982820 Score: 325
Period size: 129 Copynumber: 1.9 Consensus size: 127
22982572 TTCCAAAGTC
* * * *
22982582 GATTTGAGATCCCGTATAAGATCATATCTGGGATATGGCAATGATTTGGGATTCATGTAAGACTA
1 GATTTGAGATCCCGTATAAGACCATAGCTGGGATATGGCAATGATTTGAGATTCATGTAAGACCA
** *
22982647 TAGCTAGGCTATTGGCATCAATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATT
66 TAGCTAGGCTATTGGCATCAATACGAGATTTCATGTAAGACCATAGTTGGGCTATTGGCATT
** * * * *
22982709 GATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATTGATTTGAGATTTCGTGTAAGAC
1 GATTTGAGATCCCGTATAAGACCATAGCTGGGATA-TGGCAATGATTTGAGA-TTCATGTAAGAC
*
22982774 CATAGCTGGGCTATTGGCATCAATACGAGATTTCCATGTAAGACCAT
64 CATAGCTAGGCTATTGGCATCAATACGAGATTT-CATGTAAGACCAT
22982821 GATTGGGACA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
127 29 0.31
128 14 0.15
129 40 0.42
130 12 0.13
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (127 bp):
GATTTGAGATCCCGTATAAGACCATAGCTGGGATATGGCAATGATTTGAGATTCATGTAAGACCA
TAGCTAGGCTATTGGCATCAATACGAGATTTCATGTAAGACCATAGTTGGGCTATTGGCATT
Found at i:22992910 original size:14 final size:14
Alignment explanation
Indices: 22992891--22992918 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22992881 ACATCATACT
22992891 ATAAAATCAATAAC
1 ATAAAATCAATAAC
22992905 ATAAAATCAATAAC
1 ATAAAATCAATAAC
22992919 TTGAGATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAATCAATAAC
Found at i:22995705 original size:7 final size:7
Alignment explanation
Indices: 22995695--22995720 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22995685 ATTATTTTTA
22995695 ATTTAAT
1 ATTTAAT
22995702 ATTTAAT
1 ATTTAAT
22995709 ATTTAAT
1 ATTTAAT
22995716 ATTTA
1 ATTTA
22995721 TTAAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTAAT
Found at i:22995724 original size:24 final size:25
Alignment explanation
Indices: 22995697--22995744 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
22995687 TATTTTTAAT
* *
22995697 TTAATATTTAATAT-TTAATATTTA
1 TTAAAATTTAATATATAAATATTTA
*
22995721 TTAAAATTTTATATATAAATATTT
1 TTAAAATTTAATATATAAATATTT
22995745 TAACATTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTAAAATTTAATATATAAATATTTA
Found at i:22996504 original size:93 final size:92
Alignment explanation
Indices: 22996317--22996504 Score: 270
Period size: 93 Copynumber: 2.0 Consensus size: 92
22996307 GATAAAAAAA
* *
22996317 AACAATTTTAAGAGTACTTGCTTCACTCAATATAAACTTATAGAAAATTTTAAAAAATAATAAGA
1 AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAGAAAATTTTAAAAAATAATAACA
22996382 TAATATTATATTACCTTATCATTAATT
66 TAATATTATATTACCTTATCATTAATT
* * * * * *
22996409 AACAATTTTAAGAATGCTTGTTTCACTCAGTATAAACTTTTAGAAAAATTTTAAAAATTAATATC
1 AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAG-AAAATTTTAAAAAATAATAAC
*
22996474 ATAATATTATATTA-CTTCATTATTAATT
65 ATAATATTATATTACCTT-ATCATTAATT
22996502 AAC
1 AAC
22996505 GTCTCCTTGA
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
92 41 0.48
93 44 0.52
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.40
Consensus pattern (92 bp):
AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAGAAAATTTTAAAAAATAATAACA
TAATATTATATTACCTTATCATTAATT
Found at i:22999074 original size:20 final size:19
Alignment explanation
Indices: 22999033--22999074 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
22999023 CCTTTCAAAT
*
22999033 TTTCTTATTTTCATTTGGA
1 TTTCTTATTTTCATTTGCA
22999052 TTTCATTATTTTCCATTT-CA
1 TTTC-TTATTTT-CATTTGCA
22999072 TTT
1 TTT
22999075 ACTATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 11 0.55
21 5 0.25
ACGTcount: A:0.17, C:0.14, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTCTTATTTTCATTTGCA
Found at i:23001129 original size:43 final size:42
Alignment explanation
Indices: 23001038--23001371 Score: 346
Period size: 43 Copynumber: 7.7 Consensus size: 42
23001028 ACGTCGCTAA
* *
23001038 CTTTAGCGGCGTTTTTTTCCACAAACGCCGCTAAAGAT-AATGAC
1 CTTTAGCGGCG--CTTTTCCACAAACGCCGCTATAGATCAA-GAC
* *
23001082 CTTTAGCGGCGCTTTTTCCACAAACGCTGCTATAGATCAAGAT
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* * *
23001125 CTTTAGCGGCGCTTTTTACACAAATGCCGCTATAGCTCAAGAC
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* * * * * *
23001168 CTTTAGCGACAGTTTTTACACAAACGCCACTGTAGATTAAGAC
1 CTTTAGCGGC-GCTTTTCCACAAACGCCGCTATAGATCAAGAC
*
23001211 CTTTAGCGGCACTTTTCTCACAAACGCCGCTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAAGAC
* ** * *
23001254 CTTTAGCGGCACTTTTCCAACAAACGCTTCTATAGCTCAAGAT
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
* * * * *
23001297 CTTTAGCGCCGCTTTTCCAAAAAACGTCACTATAGATTAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
*
23001340 CTTTAACGGCGCTTTTCACACAAACGCCGCTA
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTA
23001372 ATAACATATC
Statistics
Matches: 243, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
42 5 0.02
43 223 0.92
44 15 0.06
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCACAAACGCCGCTATAGATCAAGAC
Found at i:23001212 original size:129 final size:128
Alignment explanation
Indices: 23001051--23001371 Score: 405
Period size: 129 Copynumber: 2.5 Consensus size: 128
23001041 TAGCGGCGTT
* * *
23001051 TTTTTCCACAAACGCCGCTAAAGA-TAATGACCTTTAGCGGCGCTTTTTC-CACAAACGCTGCTA
1 TTTTTCCACAAACGCCACTATAGATTAA-GACCTTTAGCGGCGC-TTTTCACACAAACGCCGCTA
* * *
23001114 TAGATCAAGATCTTTAGCGGCGCTTTTTAC-ACAAATGCCGCTATAGCTCAAGACCTTTAGCGAC
64 TAGATCAAGACCTTTAGCGGCAC-TTTTACAACAAACGCCGCTATAGCTCAAGACCTTTAGCG-C
23001178 AG
127 AG
* * * *
23001180 TTTTTACACAAACGCCACTGTAGATTAAGACCTTTAGCGGCACTTTTCTCACAAACGCCGCTATA
1 TTTTTCCACAAACGCCACTATAGATTAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTATA
* ** * *
23001245 GATCAAGACCTTTAGCGGCACTTTTCCAACAAACGCTTCTATAGCTCAAGATCTTTAGCGCCG
66 GATCAAGACCTTTAGCGGCACTTTTACAACAAACGCCGCTATAGCTCAAGACCTTTAGCGCAG
* * * *
23001308 CTTTTCCAAAAAACGTCACTATAGATTAAGACCTTTAACGGCGCTTTTCACACAAACGCCGCTA
1 TTTTTCC-ACAAACGCCACTATAGATTAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTA
23001372 ATAACATATC
Statistics
Matches: 166, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
128 17 0.10
129 146 0.88
130 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (128 bp):
TTTTTCCACAAACGCCACTATAGATTAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTATA
GATCAAGACCTTTAGCGGCACTTTTACAACAAACGCCGCTATAGCTCAAGACCTTTAGCGCAG
Found at i:23001444 original size:30 final size:32
Alignment explanation
Indices: 23001408--23001469 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
23001398 ATAATATTTA
23001408 TTTCTATGATAAATATT-A-TTT-AAATTAAAT
1 TTTCTATGA-AAATATTAACTTTAAAATTAAAT
*
23001438 TTTCTATGAAAATTTTAACTTTAAAATTAAAT
1 TTTCTATGAAAATATTAACTTTAAAATTAAAT
23001470 ATAAAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 10 0.36
31 3 0.11
32 9 0.32
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (32 bp):
TTTCTATGAAAATATTAACTTTAAAATTAAAT
Found at i:23001495 original size:34 final size:37
Alignment explanation
Indices: 23001451--23001535 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 37
23001441 CTATGAAAAT
* *
23001451 TTTAACTTTAAAA-TTAAATATAA-AAA-ATAA-TTAA
1 TTTAAATTTAAAATTTAAA-ATAATAAATATAACATAA
23001485 TTTAAATTTAAAATTTAAAATAATAAATTATAACATAA
1 TTTAAATTTAAAATTTAAAATAATAAA-TATAACATAA
*
23001523 TTAAAATTTAAAA
1 TTTAAATTTAAAA
23001536 GTTAGAACTC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
34 16 0.37
35 8 0.19
37 4 0.09
38 15 0.35
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (37 bp):
TTTAAATTTAAAATTTAAAATAATAAATATAACATAA
Found at i:23001522 original size:15 final size:14
Alignment explanation
Indices: 23001474--23001535 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 14
23001464 TTAAATATAA
*
23001474 AAAATAATTAATTT
1 AAAATAATAAATTT
* *
23001488 AAATTTA-AAATTT
1 AAAATAATAAATTT
23001501 AAAATAATAAATTAT
1 AAAATAATAAATT-T
*
23001516 AACATAATTAAAATTT
1 AAAATAA-T-AAATTT
23001532 AAAA
1 AAAA
23001536 GTTAGAACTC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
13 10 0.27
14 10 0.27
15 7 0.19
16 5 0.14
17 5 0.14
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAATAATAAATTT
Found at i:23001669 original size:43 final size:43
Alignment explanation
Indices: 23001603--23001686 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
23001593 ACATATGCAA
* * *
23001603 GGTAATAAAACATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
* * *
23001646 GGTAATAAAAGATATAATACATTTACTTGATCAAGGAAATC
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATC
23001687 AAAGATATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:23007429 original size:15 final size:15
Alignment explanation
Indices: 23007409--23007437 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23007399 TAAATTTAAC
23007409 CCCTAAATCCATAAA
1 CCCTAAATCCATAAA
23007424 CCCTAAATCCATAA
1 CCCTAAATCCATAA
23007438 CTGATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCATAAA
Found at i:23008333 original size:41 final size:41
Alignment explanation
Indices: 23008230--23008448 Score: 302
Period size: 41 Copynumber: 5.4 Consensus size: 41
23008220 TTTTATTATT
*
23008230 AAACGCCGCTAAAGGCCAGAGCATTAGCGACGCTT-TATC--
1 AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCT-TCAA
*
23008269 -AATGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
1 AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
* * *
23008309 AAACGCCTCTAAAGGCCAGAGCATTAGCGGCGCTACATCAA
1 AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
* * * *
23008350 AAACGCTGCTAAAGCCCAGAGCATTAGCGGCGCTTTTTAAA
1 AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
* *
23008391 AAACGCTGCTAAAGGCCTGAGCATTAGCGGCGCTTCTTCAA
1 AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
23008432 AAACGCCGCTAAAGGCC
1 AAACGCCGCTAAAGGCC
23008449 CCAAAAACTC
Statistics
Matches: 158, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 34 0.22
39 1 0.01
41 123 0.78
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (41 bp):
AAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAA
Found at i:23008540 original size:39 final size:40
Alignment explanation
Indices: 23008492--23008619 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
23008482 GGCTTTTTGC
* *
23008492 GGCGCTTTTCAGAAAA-CGCCGCTAATGCT-TATTTTTAGC
1 GGCGTTTTTCA-AAAAGCGCCGCTAATGCTCTATTTTTAGT
* * * **
23008531 GGTGTTTTTCAAAAAGCCCCACTAATGCTCTACCTTTAGT
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCTATTTTTAGT
*
23008571 GGCGTTTTT-ATAAAAGCGCCGCTAATGCTCGATTTTTAGT
1 GGCGTTTTTCA-AAAAGCGCCGCTAATGCTCTATTTTTAGT
23008611 GGCGTTTTT
1 GGCGTTTTT
23008620 TGTCCAAACG
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
38 4 0.05
39 21 0.29
40 48 0.66
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCGCTAATGCTCTATTTTTAGT
Found at i:23009737 original size:4 final size:4
Alignment explanation
Indices: 23009723--23009760 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
23009713 ATAACCAAAC
*
23009723 AAAG AACG AAAG AAAG AAAG AAAG AAAG AAAG -AAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
23009761 ATAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Done.