Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 78 of 226
Found at i:24788466 original size:17 final size:18
Alignment explanation
Indices: 24788434--24788467 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24788424 AATTTTTTTA
24788434 TTTAATATACTTATTATT
1 TTTAATATACTTATTATT
*
24788452 TTTAAT-TATTTATTAT
1 TTTAATATACTTATTAT
24788468 GTTATCAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTAATATACTTATTATT
Found at i:24789557 original size:19 final size:18
Alignment explanation
Indices: 24789533--24789580 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
24789523 ATAGCATTGA
*
24789533 ATTTTAATTTTTTATATAT
1 ATTTTAATTTTTTA-AAAT
24789552 ATTTTAA-TTTTTAAAAT
1 ATTTTAATTTTTTAAAAT
*
24789569 ATTTTTATTTTT
1 ATTTTAATTTTT
24789581 AAATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 9 0.35
18 10 0.38
19 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTAATTTTTTAAAAT
Found at i:24789570 original size:17 final size:17
Alignment explanation
Indices: 24789533--24789583 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
24789523 ATAGCATTGA
*
24789533 ATTTTAATTTTTTATATAT
1 ATTTTAA-TTTTTA-AAAT
24789552 ATTTTAATTTTTAAAAT
1 ATTTTAATTTTTAAAAT
*
24789569 ATTTTTATTTTTAAA
1 ATTTTAATTTTTAAA
24789584 TTTTAAAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 17 0.57
18 6 0.20
19 7 0.23
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTTTAATTTTTAAAAT
Found at i:24789606 original size:25 final size:24
Alignment explanation
Indices: 24789553--24789604 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
24789543 TTTATATATA
*
24789553 TTTTAATTTTTAAAATATTTTTAT
1 TTTTAAATTTTAAAATATTTTTAT
*
24789577 TTTTAAATTTTAAAGA-GTTTTTAT
1 TTTTAAATTTTAAA-ATATTTTTAT
24789601 TTTT
1 TTTT
24789605 TATAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTAAATTTTAAAATATTTTTAT
Found at i:24800799 original size:122 final size:122
Alignment explanation
Indices: 24800602--24800834 Score: 317
Period size: 122 Copynumber: 1.9 Consensus size: 122
24800592 TACCTTTAGA
* *
24800602 ACTTCTATCGAAACAAGTCAAAATAGTAGCCAAAGTTCAGCCCCTCTAGCACTTCTACCGATACT
1 ACTTCTACCAAAACAAGTCAAAATAGTAGCCAAAGTTCAGCCCCTCTAGCACTTCTACCGATACT
** **
24800667 CTGCTAGGTTCTACTGATACCAGTTGAAACCAC-CAGAGGTCTACCGCTACTTTGAGG
66 CTAATAGGTTCTACTGATACCAAATGAAACC-CTCAGAGGTCTACCGCTACTTTGAGG
* * * *
24800724 ACTTCTACCAAAACAAGTCAAAATAGTGGGCAAAGTTTAGCCTCC-CTTGCACTTCTACCGATAC
1 ACTTCTACCAAAACAAGTCAAAATAGTAGCCAAAGTTCAGCC-CCTCTAGCACTTCTACCGATAC
* * *
24800788 TCTAATGGGTTCTACTGATACTAAATGAAACCCTCAGAGTTCTACCG
65 TCTAATAGGTTCTACTGATACCAAATGAAACCCTCAGAGGTCTACCG
24800835 ATACAGGAGA
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
121 1 0.01
122 93 0.97
123 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (122 bp):
ACTTCTACCAAAACAAGTCAAAATAGTAGCCAAAGTTCAGCCCCTCTAGCACTTCTACCGATACT
CTAATAGGTTCTACTGATACCAAATGAAACCCTCAGAGGTCTACCGCTACTTTGAGG
Found at i:24804705 original size:40 final size:40
Alignment explanation
Indices: 24804644--24804773 Score: 120
Period size: 40 Copynumber: 3.2 Consensus size: 40
24804634 ATGTTTTGCA
* * *
24804644 TTAGTTTGCGAATCGAGATAGCTTCGGCTAT-TTATGGCAT
1 TTAGTGTGCG-ATTGAGATAGCTTCGGCTATATTATGGCAC
*
24804684 TTAGTGTGCGATTGAGAATAGCTTCGACTATATATATGGCAC
1 TTAGTGTGCGATTGAG-ATAGCTTCGGCTATAT-TATGGCAC
* * * * *
24804726 TTAGTGTGAGAGATTGAGATAGATTTGGCTAT-GTAAGGCAC
1 TTAGTGT--GCGATTGAGATAGCTTCGGCTATATTATGGCAC
24804767 TTAGTGT
1 TTAGTGT
24804774 ACGGGATTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
39 5 0.07
40 22 0.29
41 15 0.20
42 14 0.19
43 11 0.15
44 8 0.11
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35
Consensus pattern (40 bp):
TTAGTGTGCGATTGAGATAGCTTCGGCTATATTATGGCAC
Found at i:24804732 original size:42 final size:40
Alignment explanation
Indices: 24804628--24804773 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 40
24804618 CGACAATGAA
* *
24804628 TCGACTATGTT-TTGCA-TTAGTTTGCGAATCGAGATAGCT
1 TCGACTAT-TTATGGCACTTAGTGTGCGAATCGAGATAGCT
* * *
24804667 TCGGCTATTTATGGCATTTAGTGTGCG-ATTGAGAATAGCT
1 TCGACTATTTATGGCACTTAGTGTGCGAATCGAG-ATAGCT
* * *
24804707 TCGACTATATATATGGCACTTAGTGTGAGAGATTGAGATAGAT
1 TCGACTAT-T-TATGGCACTTAGTGTGCGA-ATCGAGATAGCT
* * * *
24804750 TTGGCTATGTAAGGCACTTAGTGT
1 TCGACTATTTATGGCACTTAGTGT
24804774 ACGGGATTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 16 0.18
40 22 0.25
41 15 0.17
42 16 0.18
43 11 0.12
44 6 0.07
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.36
Consensus pattern (40 bp):
TCGACTATTTATGGCACTTAGTGTGCGAATCGAGATAGCT
Found at i:24805469 original size:22 final size:22
Alignment explanation
Indices: 24805444--24805822 Score: 224
Period size: 22 Copynumber: 16.5 Consensus size: 22
24805434 TATGGTGACA
24805444 AAATGCTGTTCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
*** * **
24805466 AAATGCTGTTCCTTTTTTAGCAT
1 AAATGCTGTTCGAATGTT-GGTT
* * *
24805489 ACTAATGTTGTCCGAATGTTGTTT
1 A--AATGCTGTTCGAATGTTGGTT
*
24805513 AAATGCTGTCCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * **
24805535 AAATGCTGTTC-ATTTTTTAGCAT
1 AAATGCTGTTCGA-ATGTT-GGTT
* * *
24805558 ACTAATGATGTTTGAATGTTGTTT
1 A--AATGCTGTTCGAATGTTGGTT
*
24805582 AAATGGTGTTCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* *
24805604 AAATGTTGTCCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * **
24805626 AAATGCTGTTC-ATTTTCTAGCAT
1 AAATGCTGTTCGAATGT-T-GGTT
* *
24805649 ACTAATGCTGTCCGAATGATGGTT
1 A--AATGCTGTTCGAATGTTGGTT
** * **
24805673 AAATGCTGTTCGTTTTTTTAGCAT
1 AAATGCTGTTCG-AATGTT-GGTT
*
24805697 ACTAATGCTGTCCGAATGTTGGTT
1 A--AATGCTGTTCGAATGTTGGTT
* *
24805721 AAATGCTGTCCGTATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * *
24805743 AAATGCTGTTC-ATTTTTGAGCAT
1 AAATGCTGTTCGAATGTTG-G-TT
*
24805766 ACTAATGCTGTCCGAATGTTGGTT
1 A--AATGCTGTTCGAATGTTGGTT
24805790 AAATGCTGTTCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
24805812 AAATGCTGTTC
1 AAATGCTGTTC
24805823 ATTTTTGAGC
Statistics
Matches: 267, Mismatches: 68, Indels: 44
0.70 0.18 0.12
Matches are distributed among these distances:
21 8 0.03
22 166 0.62
23 13 0.05
24 17 0.06
25 45 0.17
26 18 0.07
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.42
Consensus pattern (22 bp):
AAATGCTGTTCGAATGTTGGTT
Found at i:24805555 original size:69 final size:69
Alignment explanation
Indices: 24805444--24805867 Score: 471
Period size: 69 Copynumber: 6.1 Consensus size: 69
24805434 TATGGTGACA
* * *
24805444 AAATGCTGTTCGAATGTTGGTTAAATGCTGTTCCTTTTTTAGCATACTAATGTTGTCCGAATGTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
*
24805509 GTTT
66 GCTT
* **
24805513 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGATGTTTGAATGTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
*
24805578 GTTT
66 GCTT
* * * * * * ** * * *
24805582 AAATGGTGTTCGAATGTTGGTTAAATGTTGTCCGA-ATGTT-GGTTA--AATGCTGTTC-ATTTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTC-ATTTTTTAGCATACTAATGCTGTCCGAATGT
*
24805642 CTAGCAT
65 -T-GCTT
* *
24805649 ACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATACTAATGCTGTCCGAAT
1 A--AATGCTGTCCGAATGTTGGTTAAATGCTGTTC-ATTTTTTAGCATACTAATGCTGTCCGAAT
*
24805714 GTTGGTT
63 GTTGCTT
* *
24805721 AAATGCTGTCCGTATGTTGGTTAAATGCTGTTCATTTTTGAGCATACTAATGCTGTCCGAATGTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
*
24805786 GGTT
66 GCTT
* * * * *
24805790 AAATGCTGTTCGAATGTTGGTTAAATGCTGTTCATTTTTGAGCATAATAATGCTGTCCAAATTGG
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGCTGTCCGAA-TGT
24805855 TGCTT
65 TGCTT
24805860 AAATGCTG
1 AAATGCTG
24805868 ATCATTTTTG
Statistics
Matches: 300, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
65 3 0.01
66 9 0.03
67 3 0.01
68 3 0.01
69 215 0.72
70 48 0.16
71 3 0.01
72 3 0.01
73 10 0.03
74 3 0.01
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.42
Consensus pattern (69 bp):
AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
GCTT
Found at i:24805580 original size:11 final size:11
Alignment explanation
Indices: 24805561--24805622 Score: 52
Period size: 11 Copynumber: 5.6 Consensus size: 11
24805551 TTAGCATACT
*
24805561 AATGATGTTTG
1 AATGTTGTTTG
*
24805572 AATGTTGTTTA
1 AATGTTGTTTG
* *
24805583 AATGGTGTTCG
1 AATGTTGTTTG
* *
24805594 AATGTTGGTTA
1 AATGTTGTTTG
**
24805605 AATGTTGTCCG
1 AATGTTGTTTG
24805616 AATGTTG
1 AATGTTG
24805623 GTTAAATGCT
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.24, C:0.05, G:0.27, T:0.44
Consensus pattern (11 bp):
AATGTTGTTTG
Found at i:24805616 original size:91 final size:91
Alignment explanation
Indices: 24805492--24805867 Score: 296
Period size: 91 Copynumber: 4.1 Consensus size: 91
24805482 TTAGCATACT
* * * *
24805492 AATGTTGTCCGAATGTTGTTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
1 AATGCTGTTCGAATGTTGCTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
** * *
24805557 TACTAATGATGTTTGAATGTTGTTTA
66 TACTAATGATGTCCGAATGATGGTTA
* * *
24805583 AATGGTGTTCGAATGTTGGTTAAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
1 AATGCTGTTCGAATGTTGCTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
*
24805648 TACTAATGCTGTCCGAATGATGGTTA
66 TACTAATGATGTCCGAATGATGGTTA
** * * * * *
24805674 AATGCTGTTCGTTTTTTTAGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTGTCCGTATGT-
1 AATGCTGTTCG-AATGTT-GCTTA--AATGCTGTCCGAATGTTGGTTAAATGCTGTTCAT-TTTC
** * * * ** *
24805738 T-GGTTA--AATGCTGTTC-ATTTTTGAGCATA
61 TAGCATACTAATGATGTCCGAATGATG-G-TTA
* * *
24805767 CTAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGAATGTTGGTTAAATGCTGTTCATTTT-TGA
1 --AATGCTGTTCGAATGTTGCTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT-A
* * * * *
24805831 GCATAATAATGCTGTCCAAATTGGTGCTTA
63 GCATACTAATGATGTCCGAA-TGATGGTTA
24805861 AATGCTG
1 AATGCTG
24805868 ATCATTTTTG
Statistics
Matches: 225, Mismatches: 45, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
90 3 0.01
91 126 0.56
92 23 0.10
93 8 0.04
94 17 0.08
95 43 0.19
96 5 0.02
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (91 bp):
AATGCTGTTCGAATGTTGCTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
TACTAATGATGTCCGAATGATGGTTA
Found at i:24805672 original size:47 final size:48
Alignment explanation
Indices: 24805514--24805729 Score: 273
Period size: 47 Copynumber: 4.6 Consensus size: 48
24805504 ATGTTGTTTA
24805514 AATGCTGTCCGAATGTTGGTTAAATGCTGTTC-ATTTTTTAGCATACT
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGATTTTTTAGCATACT
* ** * * * * **
24805561 AATGATGTTTGAATGTTGTTTAAATGGTGTTCGA-ATGTT-GGTTA--
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGATTTTTTAGCATACT
* *
24805605 AATGTTGTCCGAATGTTGGTTAAATGCTGTTC-ATTTTCTAGCATACT
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGATTTTTTAGCATACT
* *
24805652 AATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATACT
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGATTTTTTAGCATACT
24805700 AATGCTGTCCGAATGTTGGTTAAATGCTGT
1 AATGCTGTCCGAATGTTGGTTAAATGCTGT
24805730 CCGTATGTTG
Statistics
Matches: 139, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.01
44 29 0.21
45 3 0.02
46 3 0.02
47 60 0.43
48 43 0.31
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (48 bp):
AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGATTTTTTAGCATACT
Found at i:24805738 original size:117 final size:117
Alignment explanation
Indices: 24805583--24805801 Score: 377
Period size: 117 Copynumber: 1.9 Consensus size: 117
24805573 ATGTTGTTTA
* * *
24805583 AATGGTGTTCGAATGTTGGTTAAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT-AGC
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTT-TGAGC
24805647 ATACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATACT
65 ATACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATACT
*
24805700 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCGTATGTTGGTTAAATGCTGTTCATTTTTGAGCA
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTGAGCA
*
24805765 TACTAATGCTGTCCGAATGTTGGTTAAATGCTGTTCG
66 TACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCG
24805802 AATGTTGGTT
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
116 1 0.01
117 95 0.99
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (117 bp):
AATGCTGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTTGAGCA
TACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATACT
Found at i:24805862 original size:117 final size:116
Alignment explanation
Indices: 24805583--24805877 Score: 294
Period size: 117 Copynumber: 2.5 Consensus size: 116
24805573 ATGTTGTTTA
* * * * * * *
24805583 AATGGTGTTCGAATGTTGGTTAAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT-AGC
1 AATGCTGTCCGAATGTTGGTAAAATGCTGTCCAAATGGTGCTTAAATGCTGTTCATTTT-TGAGC
** *
24805647 ATACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTTTTTTTAGCATAC
65 ATACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTAATGTTAGCATAC
* ** * *
24805699 TAATGCTGTCCGAATGTTGGTTAAATGCTGTCCGTATGTTGGTTAAATGCTGTTCATTTTTGAGC
1 -AATGCTGTCCGAATGTTGGTAAAATGCTGTCCAAATGGTGCTTAAATGCTGTTCATTTTTGAGC
* **
24805764 ATACTAATGCTGTCCGAATGTTGGTTAAATGCTGTTCG-AATGTT-GGTTA-
65 ATACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTAATGTTAGCATAC
* * * *
24805813 AATGCTGTTC-ATTTTTGAGCATAATAATGCTGTCCAAATTGGTGCTTAAATGCTGATCATTTTT
1 AATGCTGTCCGAATGTTG-G--TAA-AATGCTGTCCAAA-TGGTGCTTAAATGCTGTTCATTTTT
24805877 G
61 G
24805878 TACAAATCAA
Statistics
Matches: 153, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
112 5 0.03
113 10 0.07
115 5 0.03
116 15 0.10
117 118 0.77
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.41
Consensus pattern (116 bp):
AATGCTGTCCGAATGTTGGTAAAATGCTGTCCAAATGGTGCTTAAATGCTGTTCATTTTTGAGCA
TACTAATGCTGTCCGAATGATGGTTAAATGCTGTTCGTAATGTTAGCATAC
Found at i:24806325 original size:12 final size:12
Alignment explanation
Indices: 24806310--24806337 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
24806300 TTTTGATGTA
24806310 TAAATTGTTTTG
1 TAAATTGTTTTG
24806322 TAAATTGTTTTG
1 TAAATTGTTTTG
24806334 TAAA
1 TAAA
24806338 AGATGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (12 bp):
TAAATTGTTTTG
Found at i:24807592 original size:58 final size:58
Alignment explanation
Indices: 24807530--24807708 Score: 151
Period size: 58 Copynumber: 3.1 Consensus size: 58
24807520 GTTTAAAATA
24807530 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
1 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
* * * ** ** *
24807588 AACACTTAAAATA-TATGCAATAATATACATG-TGTTAA-TTTAAAATAAGT-TTA---AA-ATA
1 AACAC-T-AGATAGAATG--ATAGTATTTA-GATG--AATTTTGCAATAAATATTATGCAAGA-A
24807645 -
58 G
24807645 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
1 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
24807703 AACACT
1 AACACT
24807709 TAAAATATAT
Statistics
Matches: 88, Mismatches: 16, Indels: 34
0.64 0.12 0.25
Matches are distributed among these distances:
52 2 0.02
53 10 0.11
54 12 0.14
55 4 0.05
56 4 0.05
57 9 0.10
58 15 0.17
59 4 0.05
60 4 0.05
61 12 0.14
62 10 0.11
63 2 0.02
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (58 bp):
AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
Found at i:24807646 original size:115 final size:115
Alignment explanation
Indices: 24807512--24807751 Score: 471
Period size: 115 Copynumber: 2.1 Consensus size: 115
24807502 AAATAGGCTC
24807512 AAAATAGAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATAT
1 AAAATA-AGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATAT
24807577 TATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
65 TATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
24807628 AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
1 AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
24807693 ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
66 ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
24807743 AAAATAAGT
1 AAAATAAGT
24807752 AATACATAAT
Statistics
Matches: 124, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
115 118 0.95
116 6 0.05
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (115 bp):
AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
Found at i:24809546 original size:50 final size:50
Alignment explanation
Indices: 24809394--24809556 Score: 139
Period size: 50 Copynumber: 3.3 Consensus size: 50
24809384 AACTTTTGGA
* * * **
24809394 AAGTAAGATTCGCCATTGTGGCTTTAATATTTTTAACTGCAATGTTGGGTA
1 AAGTAAGATTCACCATTGTAGCTTTAATCTTTTTAACTGCAATG-TGGGGG
* * * ** ** ***
24809445 AAG-AAGATTCACCGTCGTAGCTTTAATCTGTTCCACTGCACCGTTAAGG
1 AAGTAAGATTCACCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGG
** *
24809494 AAGTAAGATTTTCTATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGG
1 AAGTAAGATTCACCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGG
*
24809544 AAGCAAGATTCAC
1 AAGTAAGATTCAC
24809557 TGATGTGGTT
Statistics
Matches: 80, Mismatches: 31, Indels: 3
0.70 0.27 0.03
Matches are distributed among these distances:
49 4 0.05
50 73 0.91
51 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (50 bp):
AAGTAAGATTCACCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGG
Found at i:24809570 original size:100 final size:100
Alignment explanation
Indices: 24809394--24809606 Score: 270
Period size: 100 Copynumber: 2.1 Consensus size: 100
24809384 AACTTTTGGA
* *
24809394 AAGTAAGATTCGCCATTGTGGCTTTAATATTTTTAACTGCAATGTTGGGTAAAGAAGATTCACCG
1 AAGTAAGATTCGCCATTGTAGCTTTAATATTTTTAACTGCAATGTTGGGGAAAGAAGATTCACCG
24809459 TCGTAGCTTTAATCTGTTCCACTGCACCGTTAAGG
66 TCGTAGCTTTAATCTGTTCCACTGCACCGTTAAGG
** * * * *
24809494 AAGTAAGATTTTCTATTGTAGCTTTAATCTTTTTAACTGCAATG-TGGGGGAAGCAAGATTCACT
1 AAGTAAGATTCGCCATTGTAGCTTTAATATTTTTAACTGCAATGTTGGGGAAAG-AAGATTCACC
* * *
24809558 GAT-GTGGTTTTAATCTGTTCCACTGCACCGCTT-GGG
65 G-TCGTAGCTTTAATCTGTTCCACTGCACCG-TTAAGG
*
24809594 GAGTAAGATTCGC
1 AAGTAAGATTCGC
24809607 TGTAATTCTT
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
99 7 0.07
100 86 0.90
101 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (100 bp):
AAGTAAGATTCGCCATTGTAGCTTTAATATTTTTAACTGCAATGTTGGGGAAAGAAGATTCACCG
TCGTAGCTTTAATCTGTTCCACTGCACCGTTAAGG
Found at i:24809772 original size:44 final size:44
Alignment explanation
Indices: 24809720--24811015 Score: 253
Period size: 44 Copynumber: 27.6 Consensus size: 44
24809710 TTTAATCCGT
*
24809720 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * ** *
24809764 TCCGCTGTAATCTCAAGGAGATAAGATTTTTGGCTTCAATCTGATACGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC---T--G--C
* * * * * * * *
24809815 TACTCTACTGTAA-CTTTAGAGAGATAACATCT-TTTGTTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTGC
* *
24809862 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * *
24809906 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC---T--G--C
*** * * *
24809957 TACTCTACTGTAA-CTTCAAATAGATAAGATCCT-TTA-TTTTAATCTGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGC
* *
24810004 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
** * * * * *
24810048 TCTGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAA--T-CT--G--C
** * * *
24810099 TACTCTACTGTAA-CTTCA--GAGATAAGATCTTTTA-TTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTGC
* * *
24810144 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * *
24810188 TCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* *
24810232 TCCACTGTAA-CATCAGGGAGATAAGATTCAC-AACTTCTGATTGGGAACTCTTCGG
1 TCCACTGTAATC-TCAGGGAGATAAGATT-ACTAGCTTC--------AA-TC-T-GC
* * * * * *
24810287 TCTAATCCACTGTAATCTCAGGGAGATAAGACCT-GTGGCTTAAATCTGC
1 TCCACT-----GTAATCTCAGGGAGATAAGA-TTACTAGCTTCAATCTGC
* * * * * ** **
24810336 TTC-CT-TACA-CT--TGAAGATAAGATTCGCTGTAATTCTTCGGTCTAT
1 TCCACTGTA-ATCTCAGGGAGATAAGATT-AC--T-A-GCTTCAATCTGC
* * * * *
24810381 TCCGCCGTAATCTCAGGGAGATAAGA--CCTGATGCAATCTAATGTGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACT-A-GC-TTC-AATCTG--C
* * * * * *
24810429 TACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCGT
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGC
* *
24810476 TCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * ** *
24810520 TCCGCTGTAATCTCAAGGAGATAAGATTTTTGGCTTCAATCTGATACGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC---T--G--C
* * * * * * * *
24810571 TACTCTACTGTAA-CTTTAGAGAGATAACATCT-TTTGTTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTGC
* *
24810618 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * * *
24810662 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAAACTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC-AA-T-CT--G--C
*** * * *
24810713 TACTCTACTGTAA-CTTCAAATAGATAAGATCCT-TTA-TTTTAATCTGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGC
* *
24810760 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * * * *
24810804 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAA--T-CT--G--C
** * * *
24810855 TACTCTACTGTAA-CTTCA--GAGATAAGATCTTTTA-TTTTAATCCGC
1 T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTCAATCTGC
* * *
24810900 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
* * * *
24810944 TCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
24810988 TCCACTGTAA-CATCAGGGAGATAAGATT
1 TCCACTGTAATC-TCAGGGAGATAAGATT
24811016 CATAACTTCC
Statistics
Matches: 893, Mismatches: 218, Indels: 282
0.64 0.16 0.20
Matches are distributed among these distances:
39 1 0.00
40 9 0.01
42 27 0.03
43 22 0.02
44 499 0.56
45 27 0.03
46 13 0.01
47 19 0.02
48 2 0.00
49 26 0.03
50 6 0.01
51 34 0.04
52 41 0.05
53 21 0.02
54 112 0.13
55 9 0.01
56 2 0.00
60 21 0.02
61 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGC
Found at i:24809828 original size:142 final size:142
Alignment explanation
Indices: 24809625--24810226 Score: 899
Period size: 142 Copynumber: 4.3 Consensus size: 142
24809615 TTCGGTCTAT
* * * * * * *
24809625 TCCGCCGTAATCTCAGGGAGATAAGA--CCT-GATGCAATCTAATGTGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
*
24809687 TTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
24809752 GCTTCAATCTGC
131 GCTTCAATCTGC
* *
24809764 TCCGCTGTAATCTCAAGGAGATAAGATTTTTGGCTTCAATCTGATACGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
* * * *
24809829 TTTAGAGAGATAACATCTTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
*
24809894 GCTTTAATCTGC
131 GCTTCAATCTGC
* *
24809906 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
* * *
24809971 TTCAAATAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
*
24810036 GCTTCAATCCGC
131 GCTTCAATCTGC
* * * * *
24810048 TCTGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
*
24810113 TTC--AGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
* *
24810176 GCTTCCATCTAC
131 GCTTCAATCTGC
*
24810188 TCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAA
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAA
24810227 CCTGCTCCAC
Statistics
Matches: 418, Mismatches: 42, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
139 24 0.06
140 100 0.24
141 1 0.00
142 293 0.70
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (142 bp):
TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
GCTTCAATCTGC
Found at i:24810584 original size:142 final size:142
Alignment explanation
Indices: 24810381--24810982 Score: 890
Period size: 142 Copynumber: 4.3 Consensus size: 142
24810371 TTCGGTCTAT
* * * * * * *
24810381 TCCGCCGTAATCTCAGGGAGATAAGA--CCT-GATGCAATCTAATGTGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
* *
24810443 TTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
24810508 GCTTCAATCTGC
131 GCTTCAATCTGC
* *
24810520 TCCGCTGTAATCTCAAGGAGATAAGATTTTTGGCTTCAATCTGATACGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
* * * *
24810585 TTTAGAGAGATAACATCTTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
*
24810650 GCTTTAATCTGC
131 GCTTCAATCTGC
* * *
24810662 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTCAAACTGATGCGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
* * *
24810727 TTCAAATAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
*
24810792 GCTTCAATCCGC
131 GCTTCAATCTGC
* * * *
24810804 TCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAAC
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
*
24810869 TTC--AGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
* *
24810932 GCTTCCATCTAC
131 GCTTCAATCTGC
*
24810944 TCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAA
1 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAA
24810983 CCTGCTCCAC
Statistics
Matches: 417, Mismatches: 43, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
139 24 0.06
140 101 0.24
141 1 0.00
142 291 0.70
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (142 bp):
TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA
GCTTCAATCTGC
Found at i:24810792 original size:756 final size:756
Alignment explanation
Indices: 24809597--24811115 Score: 2993
Period size: 756 Copynumber: 2.0 Consensus size: 756
24809587 GCTTGGGGAG
24809597 TAAGATTCGCTGTAATTCTTCGGTCTATTCCGCCGTAATCTCAGGGAGATAAGACCTGATGCAAT
1 TAAGATTCGCTGTAATTCTTCGGTCTATTCCGCCGTAATCTCAGGGAGATAAGACCTGATGCAAT
24809662 CTAATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTG
66 CTAATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTG
24809727 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
131 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
24809792 TTTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAACATCTTTTGTTTTAA
196 TTTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAACATCTTTTGTTTTAA
24809857 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAG
261 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAG
*
24809922 GGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAATAGATAAGAT
326 GGAGATAAGATTTCTGGCTTCAAACTGATGCGATCTACTCTACTGTAACTTCAAATAGATAAGAT
*
24809987 CCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCTG
391 CCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCG
24810052 CTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAACTTCA
456 CTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAACTTCA
24810117 GAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCC
521 GAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCC
24810182 ATCTACTCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGCTCCACTGTAACATCA
586 ATCTACTCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGCTCCACTGTAACATCA
*
24810247 GGGAGATAAGATTCACAACTTCTGATTGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAG
651 GGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAG
24810312 ATAAGACCTGTGGCTTAAATCTGCTTCCTTACACTTGAAGA
716 ATAAGACCTGTGGCTTAAATCTGCTTCCTTACACTTGAAGA
24810353 TAAGATTCGCTGTAATTCTTCGGTCTATTCCGCCGTAATCTCAGGGAGATAAGACCTGATGCAAT
1 TAAGATTCGCTGTAATTCTTCGGTCTATTCCGCCGTAATCTCAGGGAGATAAGACCTGATGCAAT
*
24810418 CTAATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCTACTG
66 CTAATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTG
24810483 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
131 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
24810548 TTTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAACATCTTTTGTTTTAA
196 TTTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAACATCTTTTGTTTTAA
24810613 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAG
261 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAG
24810678 GGAGATAAGATTTCTGGCTTCAAACTGATGCGATCTACTCTACTGTAACTTCAAATAGATAAGAT
326 GGAGATAAGATTTCTGGCTTCAAACTGATGCGATCTACTCTACTGTAACTTCAAATAGATAAGAT
24810743 CCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCG
391 CCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCG
24810808 CTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAACTTCA
456 CTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAACTTCA
24810873 GAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCC
521 GAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCC
24810938 ATCTACTCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGCTCCACTGTAACATCA
586 ATCTACTCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGCTCCACTGTAACATCA
*
24811003 GGGAGATAAGATTCATAACTTCCGATTGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAG
651 GGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAG
24811068 ATAAGACCTGTGGCTTAAATCTGCTTCCTTACACTTGAAGA
716 ATAAGACCTGTGGCTTAAATCTGCTTCCTTACACTTGAAGA
24811109 TAAGATT
1 TAAGATT
24811116 TTCCGTCTTC
Statistics
Matches: 758, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
756 758 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (756 bp):
TAAGATTCGCTGTAATTCTTCGGTCTATTCCGCCGTAATCTCAGGGAGATAAGACCTGATGCAAT
CTAATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
TTTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAACATCTTTTGTTTTAA
TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTTAATCTGCTCCGCTGTAATCTTAG
GGAGATAAGATTTCTGGCTTCAAACTGATGCGATCTACTCTACTGTAACTTCAAATAGATAAGAT
CCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCG
CTGTAATCTTAGGGAGATAAGATTTCTGGCTTTAATTTGATGCGATCTACTCTACTGTAACTTCA
GAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCC
ATCTACTCCGCTGTAATCTCAAGGAGATAAGATTACTGGCTTCAACCTGCTCCACTGTAACATCA
GGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAG
ATAAGACCTGTGGCTTAAATCTGCTTCCTTACACTTGAAGA
Found at i:24811301 original size:131 final size:131
Alignment explanation
Indices: 24811060--24811730 Score: 879
Period size: 131 Copynumber: 5.2 Consensus size: 131
24811050 CACTGTAATC
* * * * * * * *
24811060 TCAGGGAGATAAGACCTGTGGCTTAAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTTTCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGT
* * * * * *
24811122 CTTCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTTCTGCAATTTCCAACCTATTCCATTGCTG
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
24811187 G
131 G
*
24811188 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTGCTGGGGAAGATAAGATTTGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGT
* *
24811253 CTTCGATCTGCTCCGCTACTGCTTAGGGAGA-AGAGATCTGTAACTTCCAACCTATTCCACTACT
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACA-AGATCTGTAATTTCCAACCTATTCCACTGCT
24811317 GG
130 GG
* *
24811319 TCAGGGACATAGGA-TGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCA
1 TCAGGGACATAGGACT-TGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCG
* * ** * *
24811383 TCTTTGATCTGCTCCACTACTATTTAGGGAGACAAGATCTGCAATTTCCAACCTACTCCACTGCT
65 TCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCT
*
24811448 GA
130 GG
* * * * * * *
24811450 CCAGAGACATAGAACGTGTGACTTAAATCTGTTTCCCTACTCTTGGGGAAGATAAGATTCGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGT
* * * *
24811515 TTTCGATCTGCTCTGCTACTGCTCAAGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
66 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
24811580 G
131 G
*
24811581 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATGA-ATTCT-CCG
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATT-TGCCG
* * *
24811644 TCTTCGATCTGCTCCGCTACTGCTCAGGGAAACAAGATCTGTAATTTCCAACCTACTCCACTGCT
65 TCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCT
*
24811709 GA
130 GG
*
24811711 CCAGGGACATAGGACTTGTG
1 TCAGGGACATAGGACTTGTG
24811731 ATTTCACCGA
Statistics
Matches: 474, Mismatches: 61, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
128 35 0.07
129 2 0.00
130 88 0.19
131 348 0.73
132 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (131 bp):
TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGT
CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
G
Found at i:24812936 original size:7 final size:7
Alignment explanation
Indices: 24812924--24812960 Score: 51
Period size: 6 Copynumber: 5.4 Consensus size: 7
24812914 CATTTTACTC
24812924 TTTCATT
1 TTTCATT
24812931 TTTCA-T
1 TTTCATT
24812937 TTTCA-T
1 TTTCATT
24812943 TTTCATT
1 TTTCATT
24812950 TTTCATCT
1 TTTCAT-T
24812958 TTT
1 TTT
24812961 TTTTTTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.43
7 12 0.43
8 4 0.14
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTCATT
Found at i:24818286 original size:20 final size:21
Alignment explanation
Indices: 24818254--24818293 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
24818244 GTAATTGAAT
*
24818254 GAATAATAATACATGATAAAG
1 GAATAATAATACATAATAAAG
24818275 GAATAA-AATACATAATAAA
1 GAATAATAATACATAATAAA
24818294 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (21 bp):
GAATAATAATACATAATAAAG
Found at i:24818410 original size:26 final size:27
Alignment explanation
Indices: 24818355--24818412 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
24818345 ATAATAGTAG
*
24818355 TAATAATATATAATGATATTAAAAGGC
1 TAATAATATATAATGATATTAAAAGAC
24818382 TAATAATA-ATAA-GAATATTAATAA-AC
1 TAATAATATATAATG-ATATTAA-AAGAC
24818408 TAATA
1 TAATA
24818413 TTAAACATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 1 0.04
26 17 0.61
27 10 0.36
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (27 bp):
TAATAATATATAATGATATTAAAAGAC
Found at i:24819484 original size:10 final size:9
Alignment explanation
Indices: 24819453--24819484 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
24819443 TTTTCTGGTG
24819453 TTGGGCCAT
1 TTGGGCCAT
24819462 TTGGGCCAT
1 TTGGGCCAT
24819471 TTGGGCCGAT
1 TTGGGCC-AT
24819481 TTGG
1 TTGG
24819485 TTTTGGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.09, C:0.19, G:0.38, T:0.34
Consensus pattern (9 bp):
TTGGGCCAT
Found at i:24819992 original size:44 final size:44
Alignment explanation
Indices: 24819862--24819970 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 44
24819852 TGCTCTATTG
* ** * **
24819862 CAACTTCAGAGAGATAAGATCTAT-TACTTTAATCCACTCCACTA
1 CAACTTCAGAGAGATAGGAT-TATCGGCTTCAATCTGCTCCACTA
* *
24819906 CAACTTCAGAGAGATAGGATTATCGGCTTCAATTTGCTCCACTG
1 CAACTTCAGAGAGATAGGATTATCGGCTTCAATCTGCTCCACTA
*
24819950 TAACTTCAGAGAGATAGGATT
1 CAACTTCAGAGAGATAGGATT
24819971 GATTTCTTCT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 3 0.05
44 52 0.95
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (44 bp):
CAACTTCAGAGAGATAGGATTATCGGCTTCAATCTGCTCCACTA
Found at i:24820211 original size:87 final size:87
Alignment explanation
Indices: 24820065--24820546 Score: 695
Period size: 87 Copynumber: 5.6 Consensus size: 87
24820055 ACTTGTAATC
* *
24820065 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTTCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
24820130 CCGATGGAGGTAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTCGTT
* *
24820152 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
24820217 CCGATGGAGGCAACGCTTCATT
66 CCGATGGAGGCAAGGCTTCGTT
* ** * *
24820239 CTT-GATCTGCTTCATTGTTAATACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTGCATTGCA
1 -TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
24820303 ACCGATGGAGGCAAGGCTTCGTT
65 ACCGATGGAGGCAAGGCTTCGTT
* *
24820326 CTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
24820391 CTGATGGAGGCAAGGCTTCGTT
66 CCGATGGAGGCAAGGCTTCGTT
** *
24820413 CTT-GATCTGCTTTGCTGTTAACACAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCA
1 -TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
*
24820476 ACCGATGGAGGCAA-GATCTCGTT
65 ACCGATGGAGGCAAGGCT-TCGTT
* * *
24820499 CTCGATCTACTTCACTGTTAACGCAGGAAGGCAAGATTTGCT-TCTTTA
1 TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTA
24820547 TTGATCTGTT
Statistics
Matches: 356, Mismatches: 34, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
85 3 0.01
86 80 0.22
87 270 0.76
88 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTCGTT
Found at i:24820317 original size:44 final size:44
Alignment explanation
Indices: 24820180--24820317 Score: 108
Period size: 44 Copynumber: 3.2 Consensus size: 44
24820170 TAATGCAGGA
*
24820180 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGG
* * * * * * *
24820224 AGGCAACG--CTTC-AT-TCTTGATCTGCTTCATTGTTAATAC-A-GG
1 AGGCAA-GATCTGCTATCT-TTAACCAGCTCCATTG-CAA-CCGATGG
*
24820266 AAGGCAAGATCTGCTATCTTTAACCAGCTGCATTGCAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGG
24820311 AGGCAAG
1 AGGCAAG
24820318 GCTTCGTTCT
Statistics
Matches: 68, Mismatches: 15, Indels: 22
0.65 0.14 0.21
Matches are distributed among these distances:
41 1 0.01
42 16 0.24
43 13 0.19
44 20 0.29
45 17 0.25
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGG
Found at i:24820488 original size:43 final size:43
Alignment explanation
Indices: 24820180--24820494 Score: 134
Period size: 43 Copynumber: 7.3 Consensus size: 43
24820170 TAATGCAGGA
24820180 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGG
* * * * * * * *
24820224 AGGCAACG--CTTCATTC-TTGATCTGCTTCATTGTTAATAC-A-GG
1 AGGCAA-GATCTGC-TTCTTTAACCAGCTCCACTG-CAA-CCGATGG
* *
24820266 AAGGCAAGATCTGCTATCTTTAACCAGCTGCATTGCAACCGATGG
1 -AGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGG
* * ** * * * * *
24820311 AGGCAAG-GCTTCGTTC-TCGATCTGCTTCGCTGTTAA-CGCA-GG
1 AGGCAAGATCTGC-TTCTTTAACCAGCTCCACTG-CAACCG-ATGG
*
24820353 AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGG
1 -AGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGG
* * * * * *** *
24820398 AGGCAAG-GCTTCGTTC-TTGATCTGCTTTGCTGTTAACAC-A-GG
1 AGGCAAGATCTGC-TTCTTTAACCAGCTCCACTG-CAAC-CGATGG
24820440 AAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGG
1 -AGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGG
24820484 AGGCAAGATCT
1 AGGCAAGATCT
24820495 CGTTCTCGAT
Statistics
Matches: 189, Mismatches: 54, Indels: 57
0.63 0.18 0.19
Matches are distributed among these distances:
42 40 0.21
43 66 0.35
44 55 0.29
45 28 0.15
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
AGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGG
Found at i:24821782 original size:6 final size:7
Alignment explanation
Indices: 24821732--24821781 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
24821722 CCTTAGCCTC
24821732 TTCATTT
1 TTCATTT
*
24821739 TT-ACTCT
1 TTCA-TTT
24821746 TTCATTT
1 TTCATTT
24821753 TTCATTTT
1 TTCA-TTT
24821761 TTCA-TT
1 TTCATTT
*
24821767 CTCATTT
1 TTCATTT
24821774 TTCATTT
1 TTCATTT
24821781 T
1 T
24821782 CTTTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
6 6 0.17
7 21 0.60
8 8 0.23
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (7 bp):
TTCATTT
Found at i:24821787 original size:13 final size:13
Alignment explanation
Indices: 24821745--24821788 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
24821735 ATTTTTACTC
24821745 TTTCATTTTTCATTT
1 TTTCA-TTTTC-TTT
* *
24821760 TTTCATTCTCATT
1 TTTCATTTTCTTT
24821773 TTTCATTTTCTTT
1 TTTCATTTTCTTT
24821786 TTT
1 TTT
24821789 TTTGAAAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 16 0.64
14 4 0.16
15 5 0.20
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTCATTTTCTTT
Found at i:24822207 original size:19 final size:20
Alignment explanation
Indices: 24822129--24822207 Score: 53
Period size: 19 Copynumber: 4.2 Consensus size: 20
24822119 CCTTTTCTTT
*
24822129 TTTCT-TTTTC-CTTTTTCA
1 TTTCTATTTTCTCATTTTCA
* **
24822147 -TTCTGATTTTTTCATTTAGA
1 TTTCT-ATTTTCTCATTTTCA
*
24822167 TTTCTCTTTT-TCATTCTT-A
1 TTTCTATTTTCTCATT-TTCA
24822186 TTTCT-TTTTCTCATTTTCA
1 TTTCTATTTTCTCATTTTCA
24822205 TTT
1 TTT
24822208 TCATTTTGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.08
18 6 0.12
19 24 0.50
20 10 0.21
21 4 0.08
ACGTcount: A:0.11, C:0.18, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTCTATTTTCTCATTTTCA
Found at i:24822254 original size:22 final size:23
Alignment explanation
Indices: 24822223--24822281 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
24822213 TTGATCTTGA
*
24822223 TTTTGATTTTTTCTTCTTTAT-TT
1 TTTTGATTTTTT-TTATTTATATT
*
24822246 TTTTG-TTTTTTTTATTTTTATT
1 TTTTGATTTTTTTTATTTATATT
24822268 TTTTGATTTTTTTT
1 TTTTGATTTTTTTT
24822282 GACTTTGAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 6 0.19
22 13 0.41
23 13 0.41
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.83
Consensus pattern (23 bp):
TTTTGATTTTTTTTATTTATATT
Found at i:24822255 original size:23 final size:22
Alignment explanation
Indices: 24822223--24822281 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
24822213 TTGATCTTGA
*
24822223 TTTTGATTTTTTCT-TCTTTATTT
1 TTTTG-TTTTTTTTATCTTTA-TT
*
24822246 TTTTGTTTTTTTTATTTTTATT
1 TTTTGTTTTTTTTATCTTTATT
24822268 TTTTGATTTTTTTT
1 TTTTG-TTTTTTTT
24822282 GACTTTGAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.83
Consensus pattern (22 bp):
TTTTGTTTTTTTTATCTTTATT
Found at i:24822277 original size:20 final size:19
Alignment explanation
Indices: 24822222--24822278 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
24822212 TTTGATCTTG
* *
24822222 ATTTTGATTTTTTCTTCTTT
1 ATTTTTATTTTTTATT-TTT
*
24822242 ATTTTT-TTGTTT-TTTTT
1 ATTTTTATTTTTTATTTTT
24822259 ATTTTTATTTTTTGATTTTT
1 ATTTTTATTTTTT-ATTTTT
24822279 TTTGACTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 9 0.29
18 7 0.23
19 5 0.16
20 10 0.32
ACGTcount: A:0.11, C:0.04, G:0.05, T:0.81
Consensus pattern (19 bp):
ATTTTTATTTTTTATTTTT
Found at i:24829910 original size:28 final size:28
Alignment explanation
Indices: 24829878--24830004 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
24829868 ATTTAATAAG
*
24829878 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
*
24829906 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
** * *
24829934 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
* *
24829962 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
*
24829990 ATCGCACACTTAGTG
1 CTCGCACACTTAGTG
24830005 TCTAAAATCA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCAACAATCAAA
Found at i:24837753 original size:28 final size:28
Alignment explanation
Indices: 24837721--24837847 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
24837711 ATTTAATAAG
*
24837721 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
*
24837749 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
** * *
24837777 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
* *
24837805 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAA
*
24837833 ATCGCACACTTAGTG
1 CTCGCACACTTAGTG
24837848 TCTAAAATCA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCAACAATCAAA
Found at i:24845585 original size:28 final size:28
Alignment explanation
Indices: 24845553--24845675 Score: 165
Period size: 28 Copynumber: 4.4 Consensus size: 28
24845543 AATAAGCTCT
* * *
24845553 CACACTTAGTGCTCAATAATCAAACTCG
1 CACACTTAGTGCTCTACAATTAAACTCG
* *
24845581 CACACTTAGTGCTTTACCATTAAACTCG
1 CACACTTAGTGCTCTACAATTAAACTCG
*
24845609 CACACTTAGTGCTCTACAATTAAAATCG
1 CACACTTAGTGCTCTACAATTAAACTCG
* * *
24845637 CACACTTAGTGCTTTATAATTAAATTCG
1 CACACTTAGTGCTCTACAATTAAACTCG
24845665 CACACTTAGTG
1 CACACTTAGTG
24845676 TCGAAAATCA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 84 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (28 bp):
CACACTTAGTGCTCTACAATTAAACTCG
Found at i:24845619 original size:56 final size:56
Alignment explanation
Indices: 24845553--24845675 Score: 183
Period size: 56 Copynumber: 2.2 Consensus size: 56
24845543 AATAAGCTCT
* * *
24845553 CACACTTAGTGCTCAATAATCAAACTCGCACACTTAGTGCTTTACCATTAAACTCG
1 CACACTTAGTGCTCAACAATCAAAATCGCACACTTAGTGCTTTACAATTAAACTCG
* * * *
24845609 CACACTTAGTGCTCTACAATTAAAATCGCACACTTAGTGCTTTATAATTAAATTCG
1 CACACTTAGTGCTCAACAATCAAAATCGCACACTTAGTGCTTTACAATTAAACTCG
24845665 CACACTTAGTG
1 CACACTTAGTG
24845676 TCGAAAATCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (56 bp):
CACACTTAGTGCTCAACAATCAAAATCGCACACTTAGTGCTTTACAATTAAACTCG
Found at i:24849254 original size:20 final size:20
Alignment explanation
Indices: 24849226--24849278 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
24849216 TGAACTTCTT
*
24849226 TTTGGGATGAGCAAGGAAAA
1 TTTGAGATGAGCAAGGAAAA
*
24849246 TTTGAGATGAGCAAGGAGAA
1 TTTGAGATGAGCAAGGAAAA
24849266 TTTGAGATGAGCA
1 TTTGAGATGAGCA
24849279 TGAAGGGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.23
Consensus pattern (20 bp):
TTTGAGATGAGCAAGGAAAA
Found at i:24853018 original size:122 final size:122
Alignment explanation
Indices: 24852801--24853028 Score: 325
Period size: 122 Copynumber: 1.9 Consensus size: 122
24852791 GTAATACTGA
* * *
24852801 TACCTTGAGGACTTCTATCGAAACAAGTCAAAACAGTGGCCAAAGTTCAACCCCTCCTGCACTTC
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACCCCTCCTGCACTTC
* * **
24852866 AACCGATACTCTACAGGGTTCTATCGATACCAGTTGAAACCACTAGTGTTTTACCAT
66 AACCAATACTCTACAAGGTTCTATCGATACCAAATGAAACCACTAGTGTTTTACCAT
* *
24852923 TACCTTGAGGACTTCTACCAAAACAAGTCAAAATAGTAGCCAAAGTTCATCCTCC-CCTGCACTT
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACC-CCTCCTGCACTT
* *
24852987 CTACCAATACTCTA-ATAGGTTCTATTGATACCAAATGAAACC
65 CAACCAATACTCTACA-AGGTTCTATCGATACCAAATGAAACC
24853029 CTCAGAGTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
121 1 0.01
122 90 0.97
123 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (122 bp):
TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACCCCTCCTGCACTTC
AACCAATACTCTACAAGGTTCTATCGATACCAAATGAAACCACTAGTGTTTTACCAT
Found at i:24854797 original size:27 final size:27
Alignment explanation
Indices: 24854759--24854897 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
24854749 TTACACTATT
* *
24854759 ATGACCGAAATACCCCCATAGGGTAGA
1 ATGATCGAAATACCCCCATAGGGTAAA
*
24854786 ATGATCGAAATACCCCTATAGGGTAAA
1 ATGATCGAAATACCCCCATAGGGTAAA
* * *
24854813 ATGATCGAAATACCCCCACAAGGTAGA
1 ATGATCGAAATACCCCCATAGGGTAAA
* *
24854840 ATGATCGAAATACTCCCATAAGGTAAA
1 ATGATCGAAATACCCCCATAGGGTAAA
* * *
24854867 ATGACCGAAATACCCTCATAGGATAAA
1 ATGATCGAAATACCCCCATAGGGTAAA
24854894 ATGA
1 ATGA
24854898 CTATTCTATC
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.19
Consensus pattern (27 bp):
ATGATCGAAATACCCCCATAGGGTAAA
Found at i:24856837 original size:105 final size:105
Alignment explanation
Indices: 24856649--24856840 Score: 287
Period size: 105 Copynumber: 1.8 Consensus size: 105
24856639 AGATTGTTAC
*
24856649 GATCTTAAATCAACTAACCTTTGTAAAATCAACTATGAACGTAGCTCATCAAGCTGTTTAAGAGT
1 GATCTTAAATCAACAAACCTTTGTAAAATCAACTATGAACGTAGCTCATCAAGCTGTTTAAGAGT
*
24856714 TGCGATCTTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
66 TGCGATATTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
* * * * *
24856754 GATCTTAAATCAACAAACCTTTGTAAAAT-TAGTCATGAACGTAGGTCATCATGCTGTTTAGGAG
1 GATCTTAAATCAACAAACCTTTGTAAAATCAACT-ATGAACGTAGCTCATCAAGCTGTTTAAGAG
**
24856818 TTGCGATATTAAATTAGCTAACT
65 TTGCGATATTAAACCAGCTAACT
24856841 CACTTCAATC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
104 2 0.03
105 75 0.97
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (105 bp):
GATCTTAAATCAACAAACCTTTGTAAAATCAACTATGAACGTAGCTCATCAAGCTGTTTAAGAGT
TGCGATATTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
Found at i:24859557 original size:18 final size:18
Alignment explanation
Indices: 24859534--24859570 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24859524 TAGAAACATA
24859534 GGCTAATAATACCCTTAG
1 GGCTAATAATACCCTTAG
24859552 GGCTAATAATACCCTTAG
1 GGCTAATAATACCCTTAG
24859570 G
1 G
24859571 CCATGTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (18 bp):
GGCTAATAATACCCTTAG
Found at i:24861535 original size:41 final size:41
Alignment explanation
Indices: 24861490--24861584 Score: 181
Period size: 41 Copynumber: 2.3 Consensus size: 41
24861480 ATTGAAATTT
24861490 GTGATCTGAATCAGACTATAAGCCTAGCAGGCTAAGTGCCG
1 GTGATCTGAATCAGACTATAAGCCTAGCAGGCTAAGTGCCG
*
24861531 GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCG
1 GTGATCTGAATCAGACTATAAGCCTAGCAGGCTAAGTGCCG
24861572 GTGATCTGAATCA
1 GTGATCTGAATCA
24861585 AAGGAACGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (41 bp):
GTGATCTGAATCAGACTATAAGCCTAGCAGGCTAAGTGCCG
Found at i:24861813 original size:41 final size:41
Alignment explanation
Indices: 24861756--24861929 Score: 267
Period size: 41 Copynumber: 4.2 Consensus size: 41
24861746 GTTTGTAATT
24861756 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* *
24861797 GGTGATCTGAATCAGGCTATAAGTCTAGCAGGCTAAGTACC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* * *
24861838 GGTGGTCTGAATCAGGCTATAAGCCTAGTAGGCTAAATGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* * *
24861879 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
*
24861920 GATGATCTGA
1 GGTGATCTGA
24861930 CTATGTTAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
Found at i:24869739 original size:41 final size:41
Alignment explanation
Indices: 24869682--24869816 Score: 252
Period size: 41 Copynumber: 3.3 Consensus size: 41
24869672 GTTTGTAATT
24869682 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
24869723 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* *
24869764 GGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
24869805 GGTGATCTGAAT
1 GGTGATCTGAAT
24869817 ATGTTAAATT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
Found at i:24872274 original size:12 final size:12
Alignment explanation
Indices: 24872257--24872281 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24872247 AAATTTGATT
24872257 TATATACATATA
1 TATATACATATA
24872269 TATATACATATA
1 TATATACATATA
24872281 T
1 T
24872282 TACATGGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATACATATA
Found at i:24879796 original size:20 final size:19
Alignment explanation
Indices: 24879743--24879783 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
24879733 TTTTTCGTTT
* *
24879743 AAAAAAGTAAAAAAGGAAA
1 AAAAAAGTTAAAAAGCAAA
24879762 AAAAAAGTTAAAAAGCAAA
1 AAAAAAGTTAAAAAGCAAA
24879781 AAA
1 AAA
24879784 GAATTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.07
Consensus pattern (19 bp):
AAAAAAGTTAAAAAGCAAA
Found at i:24880192 original size:9 final size:9
Alignment explanation
Indices: 24880174--24880209 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
24880164 ATTTTTTAGA
*
24880174 AAAATATAT
1 AAAATTTAT
24880183 AAAATTTAT
1 AAAATTTAT
24880192 AAAATTTAT
1 AAAATTTAT
24880201 AAAATTTAT
1 AAAATTTAT
24880210 TCAAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATTTAT
Found at i:24880201 original size:18 final size:18
Alignment explanation
Indices: 24880174--24880241 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
24880164 ATTTTTTAGA
24880174 AAAATATATAAAATTTAT
1 AAAATATATAAAATTTAT
*
24880192 AAAATTTATAAAATTTATT
1 AAAATATATAAAATTTA-T
* *
24880211 CAAAT-TATTCAAATATTAT
1 AAAATATA-TAAAAT-TTAT
24880230 AAAA-ATATAAAA
1 AAAATATATAAAA
24880242 AATAAAGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
18 22 0.54
19 16 0.39
20 3 0.07
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATATATAAAATTTAT
Found at i:24880913 original size:35 final size:34
Alignment explanation
Indices: 24880865--24880940 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 34
24880855 CCAAAATAAC
*
24880865 AATTTTTTTTTATAAA-TTTTCAAT-ATTTTCAAT
1 AATTTTTTTTTATAAACTTCT-AATAATTTTCAAT
*
24880898 AAATTTTTATTTTATAAACTTCTAATAATTTTTAAT
1 -AATTTTT-TTTTATAAACTTCTAATAATTTTCAAT
24880934 AATTTTT
1 AATTTTT
24880941 GTATTCTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
34 7 0.19
35 19 0.51
36 11 0.30
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (34 bp):
AATTTTTTTTTATAAACTTCTAATAATTTTCAAT
Found at i:24890268 original size:114 final size:114
Alignment explanation
Indices: 24889957--24890463 Score: 685
Period size: 114 Copynumber: 4.4 Consensus size: 114
24889947 GTTTATTTGT
* * ** * *
24889957 AAGCGCCGCAGAAA-ATGTTAAACAAAACGCAGCGTACGATCTTGAGGTATACTAGAATTAGTGG
1 AAGCGCCGCA-AAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGG
* * ** * *
24890021 CGATTATGCAACAATGCCGCTAAAGTACAGTATTAGCGGCGCATTATAAA
65 CGATTATGAAAAAACACCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
***
24890071 AAGCGCCGCAAAATATCTTAACCAAAAAAAAAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGG
1 AAGCGCCGCAAAATATCTTAACC-AAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGG
* * * *
24890136 CGCTTATGAAACAACACCGCTAAAGCATAGCATTAGCGGCGCCTTATAAA
65 CGATTATGAAAAAACACCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
* *
24890186 AAGCGCTGCAAAATATCTAAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
1 AAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
* * *
24890251 GCTTATGAAAAAACACCGCTAAAGCACAGAATTAGTGGCGCATTATAAA
66 GATTATGAAAAAACACCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
* * * *
24890300 AAGCACTGCAAAATATCTTAAGCAAAACGCAACGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
1 AAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
* * * * *
24890365 GATTATGAAAAAA-ATCACCAAAGCACAGCATTAGCAGCGCCTTATAAA
66 GATTATGAAAAAACACCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
24890413 AAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA
1 AAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA
24890464 GAGCCAATAG
Statistics
Matches: 348, Mismatches: 43, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
113 78 0.22
114 173 0.50
115 97 0.28
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (114 bp):
AAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
GATTATGAAAAAACACCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
Found at i:24891299 original size:14 final size:14
Alignment explanation
Indices: 24891280--24891356 Score: 75
Period size: 14 Copynumber: 5.5 Consensus size: 14
24891270 GTTAATTGAT
24891280 GGGTTTATGGTTTA
1 GGGTTTATGGTTTA
*
24891294 GGGTTTATGGTTTG
1 GGGTTTATGGTTTA
** *
24891308 GGGTTTGGGGTTTG
1 GGGTTTATGGTTTA
*
24891322 GGGTTTGA-GATTTA
1 GGGTTT-ATGGTTTA
**
24891336 GGGTTTATAATTTA
1 GGGTTTATGGTTTA
24891350 GGGTTTA
1 GGGTTTA
24891357 AGATTTACAG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
13 1 0.02
14 53 0.98
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (14 bp):
GGGTTTATGGTTTA
Found at i:24891342 original size:7 final size:7
Alignment explanation
Indices: 24891280--24891356 Score: 57
Period size: 7 Copynumber: 11.0 Consensus size: 7
24891270 GTTAATTGAT
24891280 GGGTTTA
1 GGGTTTA
*
24891287 TGGTTTA
1 GGGTTTA
24891294 GGGTTTA
1 GGGTTTA
* *
24891301 TGGTTTG
1 GGGTTTA
*
24891308 GGGTTTG
1 GGGTTTA
*
24891315 GGGTTTG
1 GGGTTTA
24891322 GGGTTT-
1 GGGTTTA
*
24891328 GAGATTTA
1 G-GGTTTA
24891336 GGGTTTA
1 GGGTTTA
***
24891343 TAATTTA
1 GGGTTTA
24891350 GGGTTTA
1 GGGTTTA
24891357 AGATTTACAG
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
6 1 0.02
7 53 0.96
8 1 0.02
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:24892297 original size:12 final size:13
Alignment explanation
Indices: 24892277--24892327 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 13
24892267 AAAGCTCATT
24892277 TTTTCCCTCAAAA
1 TTTTCCCTCAAAA
24892290 TTTT-CCTCAAAA
1 TTTTCCCTCAAAA
* * *
24892302 -TTCCCCTCTAAT
1 TTTTCCCTCAAAA
24892314 TTTTCCCT-AAAA
1 TTTTCCCTCAAAA
24892326 TT
1 TT
24892328 CCCCCAAATC
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 10 0.33
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTTCCCTCAAAA
Found at i:24892308 original size:24 final size:24
Alignment explanation
Indices: 24892281--24892335 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
24892271 CTCATTTTTT
24892281 CCCTCAAAATTTT-CCTCAAAATTC
1 CCCTCAAAATTTTCCCT-AAAATTC
* *
24892305 CCCTCTAATTTTTCCCTAAAATTC
1 CCCTCAAAATTTTCCCTAAAATTC
24892329 CCC-CAAA
1 CCCTCAAA
24892336 TCTAAAACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.11
24 21 0.78
25 3 0.11
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (24 bp):
CCCTCAAAATTTTCCCTAAAATTC
Found at i:24892944 original size:26 final size:26
Alignment explanation
Indices: 24892907--24892966 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
24892897 CTCGTTGCAT
* *
24892907 AATAATTCTTACTCTATAGCTTATCA
1 AATAATTATTACTCTATAGCTTATAA
24892933 AATAATTATTACTCTATAGCTTATAA
1 AATAATTATTACTCTATAGCTTATAA
24892959 AATAATTA
1 AATAATTA
24892967 AATTGTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (26 bp):
AATAATTATTACTCTATAGCTTATAA
Found at i:24893826 original size:28 final size:29
Alignment explanation
Indices: 24893793--24893868 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 29
24893783 TCAATCATAT
*
24893793 CATAACTTATAT-ATAAACTTACATAAT-A
1 CATAACTTACATAAT-AACTTACATAATAA
24893821 CATAACTTACATAATAACTTACATAATAA
1 CATAACTTACATAATAACTTACATAATAA
24893850 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
24893869 TATAGCCTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
28 23 0.55
29 4 0.10
32 15 0.36
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (29 bp):
CATAACTTACATAATAACTTACATAATAA
Found at i:24893833 original size:9 final size:9
Alignment explanation
Indices: 24893808--24894146 Score: 172
Period size: 9 Copynumber: 39.4 Consensus size: 9
24893798 CTTATATATA
24893808 AACTTACAT
1 AACTTACAT
24893817 AA--TACAT
1 AACTTACAT
24893824 AACTTACAT
1 AACTTACAT
*
24893833 AA-TAAC-T
1 AACTTACAT
* *
24893840 TACATA-AT
1 AACTTACAT
*
24893848 AACATA-AT
1 AACTTACAT
24893856 AACTTACAT
1 AACTTACAT
*
24893865 AA--TATAT
1 AACTTACAT
* *
24893872 AGCCTACAT
1 AACTTACAT
* *
24893881 AAATTGCAT
1 AACTTACAT
*
24893890 AACTCACAT
1 AACTTACAT
*
24893899 AA--TACAC
1 AACTTACAT
24893906 AACTTACAT
1 AACTTACAT
*
24893915 AACTTAAAT
1 AACTTACAT
24893924 AACTTACAT
1 AACTTACAT
24893933 AA--TACAT
1 AACTTACAT
24893940 AACTTACATT
1 AACTTACA-T
*
24893950 AATATTATACAT
1 -A-ACT-TACAT
24893962 AACTTACAT
1 AACTTACAT
24893971 AACTTA-ATT
1 AACTTACA-T
24893980 AA-TTA-AT
1 AACTTACAT
*
24893987 -ATTATACAT
1 AACT-TACAT
24893996 AACTTACAT
1 AACTTACAT
24894005 AACTTAC--
1 AACTTACAT
24894012 AACTTACAT
1 AACTTACAT
24894021 AACTTA-ATT
1 AACTTACA-T
* *
24894030 ACATTATACAC
1 A-ACT-TACAT
24894041 AACTTACAT
1 AACTTACAT
* *
24894050 AACATACAC
1 AACTTACAT
24894059 AA--TACAT
1 AACTTACAT
24894066 AACTTACAT
1 AACTTACAT
*
24894075 AA--TATAT
1 AACTTACAT
*
24894082 TACTTACAT
1 AACTTACAT
24894091 AACTTACAT
1 AACTTACAT
* *
24894100 AATTTACGT
1 AACTTACAT
24894109 AA--TACAT
1 AACTTACAT
* *
24894116 AA-ATATAT
1 AACTTACAT
* *
24894124 ATCATATCAT
1 AACTTA-CAT
24894134 AACTTACAT
1 AACTTACAT
24894143 AACT
1 AACT
24894147 CATATATACT
Statistics
Matches: 254, Mismatches: 43, Indels: 66
0.70 0.12 0.18
Matches are distributed among these distances:
6 1 0.00
7 52 0.20
8 30 0.12
9 143 0.56
10 15 0.06
11 5 0.02
12 4 0.02
13 4 0.02
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:24893839 original size:12 final size:12
Alignment explanation
Indices: 24893822--24893868 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
24893812 TACATAATAC
24893822 ATAACTTACATA
1 ATAACTTACATA
24893834 ATAACTTACATA
1 ATAACTTACATA
24893846 AT-A---ACATA
1 ATAACTTACATA
24893854 ATAACTTACATA
1 ATAACTTACATA
24893866 ATA
1 ATA
24893869 TATAGCCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.23
9 1 0.03
11 1 0.03
12 22 0.71
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:24893854 original size:20 final size:20
Alignment explanation
Indices: 24893819--24893868 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
24893809 ACTTACATAA
*
24893819 TACATAACTTACATAATAACT
1 TACATAA-TAACATAATAACT
24893840 TACATAATAACATAATAACT
1 TACATAATAACATAATAACT
24893860 TACATAATA
1 TACATAATA
24893869 TATAGCCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (20 bp):
TACATAATAACATAATAACT
Found at i:24893925 original size:25 final size:25
Alignment explanation
Indices: 24893887--24894076 Score: 84
Period size: 25 Copynumber: 7.2 Consensus size: 25
24893877 ACATAAATTG
* *
24893887 CATAACTCACATAATACACAACTTA
1 CATAACTTAAATAATACACAACTTA
*
24893912 CATAACTTAAATAACTTACATAA--TA
1 CATAACTTAAATAA--TACACAACTTA
*
24893937 CATAACTTACATTAATATTATACATAACTTA
1 CATAACTT--A--AATA--ATACACAACTTA
* * *
24893968 CATAACTTAATTAATTA-A-TATTATA
1 CATAACTTAAATAA-TACACAACT-TA
* *
24893993 CATAACTTACATAACT-TACAACTTA
1 CATAACTTAAATAA-TACACAACTTA
*
24894018 CATAACTTAATTACATTATACACAACTTA
1 CATAACTT-A--A-ATAATACACAACTTA
* * * *
24894047 CATAACATACACAATACATAACTTA
1 CATAACTTAAATAATACACAACTTA
24894072 CATAA
1 CATAA
24894077 TATATTACTT
Statistics
Matches: 127, Mismatches: 19, Indels: 38
0.69 0.10 0.21
Matches are distributed among these distances:
24 2 0.02
25 67 0.53
26 5 0.04
27 10 0.08
28 2 0.02
29 30 0.24
31 11 0.09
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (25 bp):
CATAACTTAAATAATACACAACTTA
Found at i:24894099 original size:34 final size:34
Alignment explanation
Indices: 24893809--24894112 Score: 159
Period size: 34 Copynumber: 8.9 Consensus size: 34
24893799 TTATATATAA
24893809 ACTTACATAA--TACATAACTTACATAATA-ACTT
1 ACTTACATAACTTACATAACTTACATAATATA-TT
* *
24893841 ACATA-ATAACATA-ATAACTTACATAATATA-T
1 ACTTACATAACTTACATAACTTACATAATATATT
* * * * * **
24893872 AGCCTACATAAATTGCATAACTCACATAATACACA
1 A-CTTACATAACTTACATAACTTACATAATATATT
* * *
24893907 ACTTACATAACTTAAATAACTTACATAATACATA
1 ACTTACATAACTTACATAACTTACATAATATATT
*
24893941 ACTTACATTAATATTATACATAACTTACATAACT-TAATT
1 ACTTACA-T-A-ACT-TACATAACTTACATAA-TAT-ATT
* * **
24893980 AATTA-AT-ATTATACATAACTTACATAACT-TACA
1 ACTTACATAACT-TACATAACTTACATAA-TATATT
* *
24894013 ACTTACATAACTTA-ATTACATT--ATACACA-ACTT
1 ACTTACATAACTTACATAAC-TTACATA-ATATA-TT
* *
24894046 ACATAACATACACAATACATAACTTACATAATATATT
1 AC-TTACATA-AC-TTACATAACTTACATAATATATT
* *
24894083 ACTTACATAACTTACATAATTTACGTAATA
1 ACTTACATAACTTACATAACTTACATAATA
24894113 CATAAATATA
Statistics
Matches: 211, Mismatches: 35, Indels: 50
0.71 0.12 0.17
Matches are distributed among these distances:
31 6 0.03
32 26 0.12
33 20 0.09
34 100 0.47
35 8 0.04
36 11 0.05
37 13 0.06
38 20 0.09
39 7 0.03
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (34 bp):
ACTTACATAACTTACATAACTTACATAATATATT
Found at i:24894114 original size:25 final size:25
Alignment explanation
Indices: 24893910--24894146 Score: 132
Period size: 25 Copynumber: 9.7 Consensus size: 25
24893900 ATACACAACT
*
24893910 TACATAACTTAAATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
*
24893935 TACATAACTTACATTAA--T--ATTA
1 TACATAACTTACA-TAACTTACATAA
24893957 TACATAACTTACATAACTTA-ATTAA
1 TACATAACTTACATAACTTACA-TAA
*
24893982 TTA-AT-ATTATACATAACTTACATAA
1 -TACATAACT-TACATAACTTACATAA
24894007 CTTAC--AACTTACATAACTTA-AT--
1 --TACATAACTTACATAACTTACATAA
* *
24894029 TACATTA--TACACAACTTACAT-A
1 TACATAACTTACATAACTTACATAA
*
24894051 -ACATACACAATACATAACTTACATAA
1 TACATA-AC-TTACATAACTTACATAA
* *
24894077 TATATTACTTACATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
* * * *
24894102 TTTACGTAA--TACATAAATATATATCA
1 --TACATAACTTACATAACT-TACATAA
24894128 TATCATAACTTACATAACT
1 TA-CATAACTTACATAACT
24894147 CATATATACT
Statistics
Matches: 165, Mismatches: 20, Indels: 52
0.70 0.08 0.22
Matches are distributed among these distances:
20 13 0.08
21 9 0.05
22 18 0.11
23 1 0.01
24 8 0.05
25 82 0.50
26 19 0.12
27 15 0.09
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.35
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:24899572 original size:21 final size:20
Alignment explanation
Indices: 24899546--24899597 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
24899536 GCTACAACTT
24899546 AAAGCAGAGGCGGCAATGAGG
1 AAAGCAGAGGCGGCAATGA-G
* *
24899567 AAAGCAGAGGCTGCAGTGAG
1 AAAGCAGAGGCGGCAATGAG
24899587 AGAAGCAGAGG
1 A-AAGCAGAGG
24899598 TTCAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.38, C:0.13, G:0.42, T:0.06
Consensus pattern (20 bp):
AAAGCAGAGGCGGCAATGAG
Found at i:24900040 original size:44 final size:44
Alignment explanation
Indices: 24899987--24900128 Score: 198
Period size: 44 Copynumber: 3.2 Consensus size: 44
24899977 TCATATTCTA
24899987 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
* * * *
24900031 TAGCAGCGTTTGTGGAAAAAAAT-GTCGCTAAAGAACATTACTTT
1 TAGCGGCGTTTGTGG-AAAAAATCGCCGCTAAAGAACATGACCTT
* * *
24900075 TAGCGGCGTTTGTGG-AGAAAGCGCCGCTAAAGAACATGAGCTT
1 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
24900118 TAGCGGCGTTT
1 TAGCGGCGTTT
24900129 CTTGGTATGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
42 4 0.05
43 28 0.33
44 46 0.54
45 7 0.08
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (44 bp):
TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
Found at i:24900120 original size:43 final size:43
Alignment explanation
Indices: 24899987--24900251 Score: 237
Period size: 42 Copynumber: 6.2 Consensus size: 43
24899977 TCATATTCTA
* *
24899987 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGG-AGAAAGCGCCGCTAAAGAACATGACCTT
* * ** * * *
24900031 TAGCAGCGTTTGTGGAAAAAAATGTCGCTAAAGAACATTACTTT
1 TAGCGGCGTTTGTGG-AGAAAGCGCCGCTAAAGAACATGACCTT
*
24900075 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGAGCTT
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * * * ** **
24900118 TAGCGGCGTTTCTTG-GTATGCGACGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * * *
24900160 TAGCGGCGTTTGTTGTGAAAGCGCCACTAAAGAACATTACCCT
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * *
24900203 TAGCGGCGTTT-TTGAGGAAGTGCAGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
*
24900245 TAACGGC
1 TAGCGGC
24900252 ATTTATTTCT
Statistics
Matches: 178, Mismatches: 42, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
42 64 0.36
43 62 0.35
44 52 0.29
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
Found at i:24900233 original size:85 final size:85
Alignment explanation
Indices: 24899968--24900213 Score: 226
Period size: 85 Copynumber: 2.9 Consensus size: 85
24899958 ATAAAAGCGC
* * * * * * *
24899968 CGCTAAAAGTCATATTCTATAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTTTA
1 CGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGG-AGAAAGCGCCACTAAAGAACATGACCCTTA
* * *** *
24900033 GCAGCGTTT-GTGGAAAAAAATGT
65 GCGGCGTTTCTTGG---AATGCGA
** * * * *
24900056 CGCTAAAGAACAT-TACTTTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGAGCTTTA
1 CGCTAAAGGTCATGTTC-TTTAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTA
*
24900120 GCGGCGTTTCTTGGTATGCGA
65 GCGGCGTTTCTTGGAATGCGA
* * *
24900141 CGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTGTGAAAGCGCCACTAAAGAACATTACCCTTAG
1 CGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAG
24900206 CGGCGTTT
66 CGGCGTTT
24900214 TTGAGGAAGT
Statistics
Matches: 131, Mismatches: 24, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
85 63 0.48
86 2 0.02
87 37 0.28
88 29 0.22
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (85 bp):
CGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAG
CGGCGTTTCTTGGAATGCGA
Found at i:24900246 original size:85 final size:85
Alignment explanation
Indices: 24899987--24900251 Score: 223
Period size: 85 Copynumber: 3.1 Consensus size: 85
24899977 TCATATTCTA
* * * * * *
24899987 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTTTAGCAGCGTTT-GTGGAAAAA
1 TAGCGGCGTTTGTGG-AGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGG---AA
*** * * *
24900051 AATGTCGCTAAAGAACATTACTTT
62 TGCGACGCTAAAGAACATGACCTT
* * * *
24900075 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGAGCTTTAGCGGCGTTTCTTGGTATGCG
1 TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGGAATGCG
** **
24900140 ACGCTAAAGGTCATGTTCTT
66 ACGCTAAAGAACATGACCTT
* * *
24900160 TAGCGGCGTTTGTTGTGAAAGCGCCACTAAAGAACATTACCCTTAGCGGCGTTT-TTGAGGAAGT
1 TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTT--GGAA-T
24900224 GC-A-GCTAAAGAACATGACCTT
63 GCGACGCTAAAGAACATGACCTT
*
24900245 TAACGGC
1 TAGCGGC
24900252 ATTTATTTCT
Statistics
Matches: 145, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
84 2 0.01
85 83 0.57
86 4 0.03
87 38 0.26
88 18 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (85 bp):
TAGCGGCGTTTGTGGAGAAAGCGCCACTAAAGAACATGACCCTTAGCGGCGTTTCTTGGAATGCG
ACGCTAAAGAACATGACCTT
Found at i:24904486 original size:20 final size:20
Alignment explanation
Indices: 24904469--24904530 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
24904459 ACCGAAGTCT
*
24904469 AAACAGAAGCACCAAAGTGC
1 AAACAGAGGCACCAAAGTGC
*
24904489 AACCAGAGGCACCGAAA-TGC
1 AAACAGAGGCACC-AAAGTGC
24904509 AAACAGAGGCACCAAAGTGC
1 AAACAGAGGCACCAAAGTGC
24904529 AA
1 AA
24904531 TCCCATACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 3 0.08
20 31 0.84
21 3 0.08
ACGTcount: A:0.47, C:0.26, G:0.23, T:0.05
Consensus pattern (20 bp):
AAACAGAGGCACCAAAGTGC
Found at i:24904502 original size:40 final size:40
Alignment explanation
Indices: 24904453--24904530 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
24904443 TAGTGCCAAT
*
24904453 AGAGACACCGAAGT-CTAAACAGAAGCACCAAAGTGCAACC
1 AGAGACACCGAAATGC-AAACAGAAGCACCAAAGTGCAACC
* *
24904493 AGAGGCACCGAAATGCAAACAGAGGCACCAAAGTGCAA
1 AGAGACACCGAAATGCAAACAGAAGCACCAAAGTGCAA
24904531 TCCCATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.45, C:0.26, G:0.23, T:0.06
Consensus pattern (40 bp):
AGAGACACCGAAATGCAAACAGAAGCACCAAAGTGCAACC
Found at i:24917525 original size:31 final size:31
Alignment explanation
Indices: 24917487--24917554 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
24917477 TAAGGACTTC
24917487 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
*
24917518 CAAGTTGAGTCTATATAAAGGTTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
24917549 CAAGTT
1 CAAGTT
24917555 AAACACACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (31 bp):
CAAGTTGAGTCTATATAAAGGCTATTGTAAT
Found at i:24921118 original size:19 final size:20
Alignment explanation
Indices: 24921076--24921119 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
24921066 GAGAAAAAGT
24921076 CAAAAGTAAAAATAAGAAGA
1 CAAAAGTAAAAATAAGAAGA
24921096 -AAAAGTACAAAAT-AGAA-A
1 CAAAAGTA-AAAATAAGAAGA
24921114 CAAAAG
1 CAAAAG
24921120 CACTTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (20 bp):
CAAAAGTAAAAATAAGAAGA
Found at i:24921118 original size:20 final size:19
Alignment explanation
Indices: 24921077--24921118 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
24921067 AGAAAAAGTC
*
24921077 AAAAGTAAAAATAAGAAGA
1 AAAAGTAAAAATAAGAACA
24921096 AAAAGTACAAAAT-AGAAACA
1 AAAAGTA-AAAATAAG-AACA
24921116 AAA
1 AAA
24921119 GCACTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.74, C:0.05, G:0.12, T:0.10
Consensus pattern (19 bp):
AAAAGTAAAAATAAGAACA
Found at i:24923208 original size:13 final size:13
Alignment explanation
Indices: 24923190--24923214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24923180 AGTAGATTAG
24923190 TAATTATTTCCCA
1 TAATTATTTCCCA
24923203 TAATTATTTCCC
1 TAATTATTTCCC
24923215 CAAACTGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTATTTCCCA
Found at i:24925866 original size:28 final size:28
Alignment explanation
Indices: 24925830--24925932 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
24925820 AAATATTTAA
* * *
24925830 TAAATTCGCACACTTAGTGCTTAATAAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
* * *
24925858 CAAAATCGCACACTTAGTGCTTTACCAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
24925886 TAAACTCGCACACTTAGTGCTTTACAAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
24925914 TAAACTCGCACACTTAGTG
1 TAAACTCGCACACTTAGTG
24925933 TCGAAAGTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (28 bp):
TAAACTCGCACACTTAGTGCTTTACAAT
Found at i:24926537 original size:14 final size:15
Alignment explanation
Indices: 24926518--24926546 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24926508 TCATGAAACC
24926518 TTCACACAT-ATAAA
1 TTCACACATCATAAA
24926532 TTCACACATCATAAA
1 TTCACACATCATAAA
24926547 CACACAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATCATAAA
Found at i:24938457 original size:20 final size:21
Alignment explanation
Indices: 24938418--24938459 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24938408 CAGGTTTTTA
* *
24938418 TTTTTAAAAATAGTGGATAAG
1 TTTTTAAAAATAATGAATAAG
24938439 TTTTTAAAAA-AATGAATAAG
1 TTTTTAAAAATAATGAATAAG
24938459 T
1 T
24938460 ATTTCTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (21 bp):
TTTTTAAAAATAATGAATAAG
Found at i:24938494 original size:18 final size:19
Alignment explanation
Indices: 24938468--24938507 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
24938458 GTATTTCTAT
*
24938468 TTATTTTTAATATTAT-AA
1 TTATATTTAATATTATCAA
24938486 TTATATTTAATATTATCAA
1 TTATATTTAATATTATCAA
24938505 TTA
1 TTA
24938508 ATTATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTTAATATTATCAA
Found at i:24940760 original size:6 final size:6
Alignment explanation
Indices: 24940749--24940784 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
24940739 CCCCTAACTC
* *
24940749 TCACCA TTACCA TCACCA TCGCCA TCACCA TCACCA
1 TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA
24940785 ACAACTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.47, G:0.03, T:0.19
Consensus pattern (6 bp):
TCACCA
Found at i:24952414 original size:22 final size:21
Alignment explanation
Indices: 24952389--24952432 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
24952379 TGAAAAAAAA
*
24952389 TTTAATTTTCCTATTATTATTT
1 TTTAATTTTACTATT-TTATTT
24952411 TTTAATTTTACTATTTTATTT
1 TTTAATTTTACTATTTTATTT
24952432 T
1 T
24952433 ATTTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTAATTTTACTATTTTATTT
Found at i:24953692 original size:17 final size:17
Alignment explanation
Indices: 24953657--24953691 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24953647 GTGGGGGAGA
*
24953657 TTATTTTGGGATTTATT
1 TTATTATGGGATTTATT
24953674 TTATTATGGGATTT-TT
1 TTATTATGGGATTTATT
24953690 TT
1 TT
24953692 TTTCTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (17 bp):
TTATTATGGGATTTATT
Found at i:24959718 original size:7 final size:6
Alignment explanation
Indices: 24959697--24959739 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
24959687 TCTTTTCAAC
*
24959697 AAAAA- AAAAAG AAAAAT AAAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT A
24959740 CTCCTCTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
5 5 0.14
6 24 0.69
7 6 0.17
ACGTcount: A:0.86, C:0.00, G:0.02, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:24959719 original size:13 final size:13
Alignment explanation
Indices: 24959697--24959731 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
24959687 TCTTTTCAAC
24959697 AAAA-AAAAAAGA
1 AAAATAAAAAAGA
*
24959709 AAAATAAAAAATA
1 AAAATAAAAAAGA
24959722 AAAATAAAAA
1 AAAATAAAAA
24959732 TAAAAATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.09
Consensus pattern (13 bp):
AAAATAAAAAAGA
Found at i:24959724 original size:19 final size:18
Alignment explanation
Indices: 24959697--24959737 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
24959687 TCTTTTCAAC
24959697 AAAAAAAAAAGAAAAATA
1 AAAAAAAAAAGAAAAATA
*
24959715 AAAAATAAAAATAAAAATA
1 AAAAA-AAAAAGAAAAATA
24959734 AAAA
1 AAAA
24959738 TACTCCTCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.10
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAATA
Found at i:24968409 original size:25 final size:25
Alignment explanation
Indices: 24968380--24968446 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
24968370 GATACTCCAC
*
24968380 AGCTCGTGAGAGCATACTAATTTAT
1 AGCTCATGAGAGCATACTAATTTAT
* *
24968405 AGCTCATAAGAGCATATTAATTTAT
1 AGCTCATGAGAGCATACTAATTTAT
24968430 AGCTCATGAGAGCATAC
1 AGCTCATGAGAGCATAC
24968447 CGATCTACAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (25 bp):
AGCTCATGAGAGCATACTAATTTAT
Found at i:24968495 original size:25 final size:25
Alignment explanation
Indices: 24968389--24968496 Score: 69
Period size: 25 Copynumber: 4.3 Consensus size: 25
24968379 CAGCTCGTGA
* * *
24968389 GAGCATACTAATTTATAGCTCATAA
1 GAGCATACCAATTCATAGCTCATAT
** *
24968414 GAGCATATTAATTTATAGCTCATGA-
1 GAGCATACCAATTCATAGCTCAT-AT
* * *
24968439 GAGCATACCGA-TCTACAGCTTA-AGT
1 GAGCATACCAATTC-ATAGCTCATA-T
* *
24968464 GACCATACCGATTCATAGCTCATAT
1 GAGCATACCAATTCATAGCTCATAT
24968489 GAGCATAC
1 GAGCATAC
24968497 ATGTACAAGA
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 60 0.91
26 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (25 bp):
GAGCATACCAATTCATAGCTCATAT
Found at i:24984724 original size:20 final size:20
Alignment explanation
Indices: 24984693--24984755 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
24984683 GCATCATAGA
24984693 TGCATAACAGGGGCACCAAAG
1 TGCA-AACAGGGGCACCAAAG
*
24984714 TGCAGACAGGGGCA-CAAATG
1 TGCAAACAGGGGCACCAAA-G
*
24984734 TGCAAACAGGGGCACCATAG
1 TGCAAACAGGGGCACCAAAG
24984754 TG
1 TG
24984756 TGAATAGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.11
20 26 0.70
21 7 0.19
ACGTcount: A:0.35, C:0.22, G:0.32, T:0.11
Consensus pattern (20 bp):
TGCAAACAGGGGCACCAAAG
Found at i:24987534 original size:41 final size:41
Alignment explanation
Indices: 24987437--24987551 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 41
24987427 ATTTTACCTT
* * * * *
24987437 ATACAATTCACTGGTACGTAGCCTACTAAGCTCAAGGCCTA
1 ATACAATTCACTGGCACGAAGCCTGCTAGGCTCAAAGCCTA
* * * *
24987478 AAACAAATACACTGGCACGAAACCTGCTAGGCTCAAAGCCTG
1 ATAC-AATTCACTGGCACGAAGCCTGCTAGGCTCAAAGCCTA
*
24987520 ATACAATTCACTGGCATGAAGCCTGCTAGGCT
1 ATACAATTCACTGGCACGAAGCCTGCTAGGCT
24987552 TAAGGCATGA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 28 0.47
42 32 0.53
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
ATACAATTCACTGGCACGAAGCCTGCTAGGCTCAAAGCCTA
Found at i:24987563 original size:41 final size:41
Alignment explanation
Indices: 24987437--24987563 Score: 137
Period size: 41 Copynumber: 3.1 Consensus size: 41
24987427 ATTTTACCTT
* * * * *
24987437 ATACAATTCACTGGTACGTAGCCTACTAAGCTCAAGGCCTA
1 ATACAATTCACTGGCACGAAGCCTGCTAGGCTCAAGGCCTG
* * * *
24987478 AAACAAATACACTGGCACGAAACCTGCTAGGCTCAAAGCCTG
1 ATAC-AATTCACTGGCACGAAGCCTGCTAGGCTCAAGGCCTG
* * *
24987520 ATACAATTCACTGGCATGAAGCCTGCTAGGCTTAAGGCATG
1 ATACAATTCACTGGCACGAAGCCTGCTAGGCTCAAGGCCTG
24987561 ATA
1 ATA
24987564 TAGGATGAAG
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
41 37 0.54
42 32 0.46
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (41 bp):
ATACAATTCACTGGCACGAAGCCTGCTAGGCTCAAGGCCTG
Found at i:24989865 original size:16 final size:16
Alignment explanation
Indices: 24989839--24989872 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
24989829 GATTAAGGGC
24989839 TTTAAGTTT-AATTAA
1 TTTAAGTTTAAATTAA
24989854 TTTAATGTTTAAATTAA
1 TTTAA-GTTTAAATTAA
24989871 TT
1 TT
24989873 AAACTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTAAGTTTAAATTAA
Found at i:25001040 original size:18 final size:18
Alignment explanation
Indices: 25001017--25001077 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 18
25001007 TTCTTTTTCC
25001017 TTATTTTTATTTATTTAT
1 TTATTTTTATTTATTTAT
25001035 TTATTTATT-TTTATTCTTAGTT
1 TTATTT-TTATTTA-T-TTA--T
25001057 TTATTTTTATTTTATTTAT
1 TTATTTTTA-TTTATTTAT
25001076 TT
1 TT
25001078 TGAGAATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
18 10 0.28
19 6 0.17
20 3 0.08
21 5 0.14
22 8 0.22
23 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
TTATTTTTATTTATTTAT
Found at i:25001088 original size:45 final size:40
Alignment explanation
Indices: 25001017--25001106 Score: 90
Period size: 45 Copynumber: 2.1 Consensus size: 40
25001007 TTCTTTTTCC
* * *
25001017 TTATTTTTATTTATTTATTTATTTATTTTTATTCTTAGTT
1 TTATTTTTATTTATTTATTTAATTATTATTATTATTAGTT
* *
25001057 TTATTTTTATTTTATTTATTTTGAGAATTATTATTGTTATTATTT
1 TTATTTTTA-TTTATTTA-TTT---AATTATTATTATTATTAGTT
25001102 TTATT
1 TTATT
25001107 ACCATTGTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
40 9 0.22
41 8 0.20
42 3 0.08
45 20 0.50
ACGTcount: A:0.22, C:0.01, G:0.04, T:0.72
Consensus pattern (40 bp):
TTATTTTTATTTATTTATTTAATTATTATTATTATTAGTT
Found at i:25009801 original size:29 final size:29
Alignment explanation
Indices: 25009736--25009814 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
25009726 CCATTATAAC
*
25009736 AACCTTTGTGGCTTACTCTG-A-ATGAAT
1 AACCTTTGTGGCATACTCTGTATATGAAT
*
25009763 CACCTTTGTGGCATACTCTGTATAT-ATAT
1 AACCTTTGTGGCATACTCTGTATATGA-AT
25009792 AACCTTTGTGGCATA-TACTGTAT
1 AACCTTTGTGGCATACT-CTGTAT
25009815 GGTTTGCCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 18 0.40
28 3 0.07
29 24 0.53
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (29 bp):
AACCTTTGTGGCATACTCTGTATATGAAT
Found at i:25014224 original size:13 final size:14
Alignment explanation
Indices: 25014205--25014242 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
25014195 CAATGGCATA
25014205 GAAATAATATAAAC
1 GAAATAATATAAAC
25014219 -AAATAA-ATAAAC
1 GAAATAATATAAAC
25014231 GAAATTAATATA
1 GAAA-TAATATA
25014243 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:25015043 original size:3 final size:3
Alignment explanation
Indices: 25015035--25015073 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
25015025 GTATATATAG
25015035 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
25015074 CTTAATAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25017237 original size:131 final size:131
Alignment explanation
Indices: 25017001--25017242 Score: 353
Period size: 131 Copynumber: 1.8 Consensus size: 131
25016991 ACAGGAAGGC
** * *
25017001 AAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGGTAGGATTCACAATCTTCAACTT
1 AAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGACAAGATTCACAATCTTCAACCT
* *
25017066 ATTCCACTACTGACCAGGGCGATAAGGCTGGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGA
66 ATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCTCCACTACTGCTTAGGGAGA
25017131 T
131 T
*
25017132 AAGATCTG-TAATTTTCAACCTACTCCACTGCTGAC-CGGGGAGACAAGATTCACAATCTTCAAC
1 AAGATCTGCT-ATTTTCAACCTACTCCACTGCT-ACTCAGGGAGACAAGATTCACAATCTTCAAC
* * * *
25017195 CTATTCCACTGCTGACCAGGGAGATAGGGCTGGGGTCATCGATTTGCT
64 CTATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCT
25017243 TTGCTGTCTG
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
130 1 0.01
131 95 0.97
132 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (131 bp):
AAGATCTGCTATTTTCAACCTACTCCACTGCTACTCAGGGAGACAAGATTCACAATCTTCAACCT
ATTCCACTACTGACCAGGGAGATAAGGCTGGGGACATCGATCTGCTCCACTACTGCTTAGGGAGA
T
Found at i:25017284 original size:88 final size:88
Alignment explanation
Indices: 25017222--25017896 Score: 909
Period size: 88 Copynumber: 7.7 Consensus size: 88
25017212 AGGGAGATAG
* * * * * * *
25017222 GGCTGGGGTCATCGATTTGCTTTGCTGTCTGTGCAGGAAGGCAAGATATGTTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
25017287 TCCGTTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
25017310 GGCTGGTGTTTTCGATCTACTTCGCTGTCGGTGTAGGAATGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
25017375 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * *
25017398 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAATGCAATATTTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
25017463 TCCGCTGCAACCTAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * *
25017486 GGCTGGTATCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACTTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
25017551 TCCGCTGCAACCCAGAGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * * *
25017574 GGCTAGTATTTTTGATCTGCTTTGCTGTCGGTGCAGGAAGGTAAGATCTGCTATTTTTAACTTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
25017639 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * *
25017662 GGCTAGTGTCTTTGATATGTTTCGCTGTCGGTGCAGGAAGACAAGATCTGTTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* * *
25017727 TTCACTGCAACCCAAGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * ** * * *
25017750 GGCTAGTGTCTTTGTTCTGCTTCATTGTCGGTACAGGAAGGTAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
25017815 TCCGCTGCAACCTAGGGAGACAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * *
25017838 GGCTGGTGTCTTCGATATGCTTTGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
25017897 CTAATTTGCT
Statistics
Matches: 519, Mismatches: 68, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 519 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.31
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:25017572 original size:44 final size:43
Alignment explanation
Indices: 25017519--25017662 Score: 123
Period size: 44 Copynumber: 3.3 Consensus size: 43
25017509 ACTGTCGGTG
25017519 CAGGAAGGCAAGATCTGCTATTTTTAACTTGCTCCGCTGCAACC
1 CAGG-AGGCAAGATCTGCTATTTTTAACTTGCTCCGCTGCAACC
* * ** ****
25017563 CAGAGAGGCAAG-GCTAG-TATTTTTGA-TCTGCTTTGCTGTCGGTG
1 CAG-GAGGCAAGATCT-GCTATTTTTAACT-TGCTCCGCTG-CAACC
*
25017607 CAGGAAGGTAAGATCTGCTATTTTTAACTTGCTCCGCTGCAACC
1 CAGG-AGGCAAGATCTGCTATTTTTAACTTGCTCCGCTGCAACC
25017651 CAGGGAGGCAAG
1 CA-GGAGGCAAG
25017663 GCTAGTGTCT
Statistics
Matches: 73, Mismatches: 18, Indels: 18
0.67 0.17 0.17
Matches are distributed among these distances:
42 1 0.01
43 19 0.26
44 31 0.42
45 21 0.29
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (43 bp):
CAGGAGGCAAGATCTGCTATTTTTAACTTGCTCCGCTGCAACC
Found at i:25024543 original size:149 final size:152
Alignment explanation
Indices: 25024382--25024675 Score: 522
Period size: 156 Copynumber: 1.9 Consensus size: 152
25024372 AAAAATTGAA
25024382 ACCTGAATAAAAAAGTGTGTATATATGTATAT-AAAGTTAGG-AAATAAAATAAAAATAAAAATA
1 ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAAATAAAATAAAAATAAAAATA
25024445 TGTATATGTATAT-AAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATAA
66 TGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATAA
25024509 TAAAATATATATATAATATGTG
131 TAAAATATATATATAATATGTG
25024531 ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAATAAAATAAAATAAAAATAAA
1 ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGG----AAAATAAAATAAAAATAAA
25024596 AATATGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATG
62 AATATGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATG
*
25024661 ATAATAATATATATA
127 ATAATAAAATATATA
25024676 ATATGTGCAT
Statistics
Matches: 137, Mismatches: 1, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
149 32 0.23
150 9 0.07
155 35 0.26
156 61 0.45
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.31
Consensus pattern (152 bp):
ACCTGAATAAAAAAGTGTGTATATATGTATATAAAAGTTAGGAAAATAAAATAAAAATAAAAATA
TGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTTATGCAAATAGAATGATAA
TAAAATATATATATAATATGTG
Found at i:25024562 original size:79 final size:79
Alignment explanation
Indices: 25024429--25024676 Score: 264
Period size: 79 Copynumber: 3.2 Consensus size: 79
25024419 TAGGAAATAA
*
25024429 AATAAAA-ATA-AAAATATGTATATGTATAT-AAACGTAAATGAATATATAGGTATATAAAAGTT
1 AATAAAATATATAAAATATGTACATGTATATAAAAC--AAATGAATATATAGGTATATAAAAGTT
25024491 ATGCAAATAGAATGAT
64 ATGCAAATAGAATGAT
* * ** *
25024507 AATAAAATATATATATAATATGTGACCTG-A-ATAAAA-AAGTGTGTATATATGTATATAAAAGT
1 AATAAAATATATA-A-AATATGT-ACATGTATATAAAACAAATGAATATATAGGTATATAAAAGT
* * *
25024569 TA-GGAAATAAAAT-AA
63 TATGCAAATAGAATGAT
*
25024584 AATAAAA-ATA-AAAATATGTATATGTATATAAAACGTAAATGAATATATAGGTATATAAAAGTT
1 AATAAAATATATAAAATATGTACATGTATATAAAAC--AAATGAATATATAGGTATATAAAAGTT
25024647 ATGCAAATAGAATGAT
64 ATGCAAATAGAATGAT
*
25024663 AATAATATATATAA
1 AATAAAATATATAA
25024677 TATGTGCATG
Statistics
Matches: 136, Mismatches: 19, Indels: 27
0.75 0.10 0.15
Matches are distributed among these distances:
72 3 0.02
73 8 0.06
74 7 0.05
75 1 0.01
76 3 0.02
77 32 0.24
78 25 0.18
79 34 0.25
80 4 0.03
81 5 0.04
82 11 0.08
83 3 0.02
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.31
Consensus pattern (79 bp):
AATAAAATATATAAAATATGTACATGTATATAAAACAAATGAATATATAGGTATATAAAAGTTAT
GCAAATAGAATGAT
Found at i:25024772 original size:3 final size:3
Alignment explanation
Indices: 25024764--25024799 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
25024754 GTATATATAG
25024764 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
25024800 ATGGGGACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25027255 original size:30 final size:33
Alignment explanation
Indices: 25027201--25027265 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 33
25027191 TAGTAATGCC
25027201 AAAATTACATTTTAGCCTTCTAAAAA-TAAAAA
1 AAAATTACATTTTAGCCTTCTAAAAACTAAAAA
* * *
25027233 AAAATTA-A-TTTAGTCTTTTAAAAACTATAAA
1 AAAATTACATTTTAGCCTTCTAAAAACTAAAAA
25027264 AA
1 AA
25027266 TACAAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 14 0.48
31 8 0.28
32 7 0.24
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (33 bp):
AAAATTACATTTTAGCCTTCTAAAAACTAAAAA
Found at i:25030194 original size:27 final size:27
Alignment explanation
Indices: 25030156--25030287 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
25030146 CATAAACATG
*
25030156 TCATGAAAGAAAACCCTTTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
25030183 TCATGAAAGAAAAACCTTTGTGGCAAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
25030210 TCGTTAAAGAACAACCTTTATGGTGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
25030237 TCATGAAAGAAAAACCTCTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
25030264 CCCTGCAAGGATAACCTTTGTGGC
1 TCATGAAAGAAAAACCTTTGTGGC
25030288 ATACTACGGA
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
TCATGAAAGAAAAACCTTTGTGGCGAA
Found at i:25032922 original size:22 final size:22
Alignment explanation
Indices: 25032894--25032937 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25032884 AGTGTTAGAA
25032894 CTCGAAGTGTCATCATGAGTAT
1 CTCGAAGTGTCATCATGAGTAT
25032916 CTCGAAGTGTCATCATGAGTAT
1 CTCGAAGTGTCATCATGAGTAT
25032938 GAGAACCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (22 bp):
CTCGAAGTGTCATCATGAGTAT
Found at i:25034471 original size:34 final size:34
Alignment explanation
Indices: 25034423--25034487 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
25034413 CACCTTAAGC
*
25034423 TGAGATTTTATAATTGTTGTACACTGCATAAAGA
1 TGAGATTTTATAATTGTTGGACACTGCATAAAGA
*
25034457 TGAGATTTTGTAATTGTTGGACACTGCATAA
1 TGAGATTTTATAATTGTTGGACACTGCATAA
25034488 GGAGAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (34 bp):
TGAGATTTTATAATTGTTGGACACTGCATAAAGA
Found at i:25040506 original size:25 final size:24
Alignment explanation
Indices: 25040446--25040507 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
25040436 TTTATTTGGG
*
25040446 AAGCCTTTGTGGCAAGTTATCTGTA
1 AAGCC-TTGTGGCAAGTTACCTGTA
* *
25040471 AAGTCGTTGTGGCAGGTTACCTGTA
1 AAG-CCTTGTGGCAAGTTACCTGTA
25040496 AAGCCTATGTGG
1 AAGCCT-TGTGG
25040508 TGTAATGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 2 0.06
25 28 0.90
26 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (24 bp):
AAGCCTTGTGGCAAGTTACCTGTA
Found at i:25051843 original size:22 final size:22
Alignment explanation
Indices: 25051818--25051865 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
25051808 CCCATTTGTG
*
25051818 GTACTAAACATTTTTCCATGCA
1 GTACTAAACATTTTTCCATACA
*
25051840 GTACTAAATATTTTTCCATACA
1 GTACTAAACATTTTTCCATACA
25051862 GTAC
1 GTAC
25051866 AATTAAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (22 bp):
GTACTAAACATTTTTCCATACA
Found at i:25053273 original size:23 final size:22
Alignment explanation
Indices: 25053228--25053273 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
25053218 TTATGTATTG
* *
25053228 TTATTTTATTTTTTAATATTTT
1 TTATTTTATTTTGTAATAGTTT
*
25053250 TTATTTTATTTTAGTAATGGTTT
1 TTATTTTATTTT-GTAATAGTTT
25053273 T
1 T
25053274 ATTAATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.72
Consensus pattern (22 bp):
TTATTTTATTTTGTAATAGTTT
Found at i:25066322 original size:27 final size:28
Alignment explanation
Indices: 25066245--25066313 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
25066235 TGTAATCCCT
25066245 GTGTTTACTATCCCAACGGACTA-CCTC
1 GTGTTTACTATCCCAACGGACTATCCTC
* *
25066272 GTGTTTACTATCCCAATGGACTATCTTC
1 GTGTTTACTATCCCAACGGACTATCCTC
25066300 -TGTTTACTATCCCA
1 GTGTTTACTATCCCA
25066314 GGAGACTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 36 0.92
28 3 0.08
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (28 bp):
GTGTTTACTATCCCAACGGACTATCCTC
Found at i:25067764 original size:16 final size:16
Alignment explanation
Indices: 25067743--25067773 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25067733 TCCCAACCCC
*
25067743 ATGCAGTATGTCATGT
1 ATGCAGTATGCCATGT
25067759 ATGCAGTATGCCATG
1 ATGCAGTATGCCATG
25067774 CTTAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (16 bp):
ATGCAGTATGCCATGT
Found at i:25067879 original size:27 final size:27
Alignment explanation
Indices: 25067849--25068071 Score: 166
Period size: 27 Copynumber: 8.3 Consensus size: 27
25067839 TATAATAGTC
* *
25067849 ATTTTACCCTACGAGCGTATTTCGATA
1 ATTTTACCCTACGAGGGTATTTCGGTA
** *
25067876 ATTTTACCCT-TTAGGGTTATCTCGGTA
1 ATTTTACCCTACGAGGG-TATTTCGGTA
* * *
25067903 ATTTTACCTTTCGGGGGTATTTCGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
* * * * *
25067930 ATTTTACCTTTCGGGGGAATTTTGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
* * **
25067957 ATTTTACAC-ATCAAGGGTATTTTAGTA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
25067984 ATTTTACCC-ATCGAGGGTATTTCGGTA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
* * * *
25068011 ATTTTACCC-ATCGAGGATGTTTTGATA
1 ATTTTACCCTA-CGAGGGTATTTCGGTA
** *
25068038 ATTTTACCCTTTGGGGGTATTTCGGTA
1 ATTTTACCCTACGAGGGTATTTCGGTA
25068065 ATTTTAC
1 ATTTTAC
25068072 AACCTTTTCG
Statistics
Matches: 158, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 3 0.02
27 152 0.96
28 3 0.02
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTACGAGGGTATTTCGGTA
Found at i:25067923 original size:54 final size:53
Alignment explanation
Indices: 25067849--25068071 Score: 200
Period size: 54 Copynumber: 4.1 Consensus size: 53
25067839 TATAATAGTC
* * * *
25067849 ATTTTACCCTACGAGCGTATTTCGATAATTTTACCCTTTAGGGTTATCTCGGTA
1 ATTTTACCAT-CGAGGGTATTTCGATAATTTTACCCTTTAGGGGTATTTCGGTA
* * * * * *
25067903 ATTTTACCTTTCGGGGGTATTTCGGTAATTTTA-CCTTTCGGGGGAATTTTGGTA
1 ATTTTACC-ATCGAGGGTATTTCGATAATTTTACCCTTT-AGGGGTATTTCGGTA
* * * *
25067957 ATTTTACACATCAAGGGTATTT-TAGTAATTTTACCC-ATCGAGGGTATTTCGGTA
1 ATTTTAC-CATCGAGGGTATTTCGA-TAATTTTACCCTTTAG-GGGTATTTCGGTA
* * * *
25068011 ATTTTACCCATCGAGGATGTTTTGATAATTTTACCCTTTGGGGGTATTTCGGTA
1 ATTTTA-CCATCGAGGGTATTTCGATAATTTTACCCTTTAGGGGTATTTCGGTA
25068065 ATTTTAC
1 ATTTTAC
25068072 AACCTTTTCG
Statistics
Matches: 136, Mismatches: 24, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
53 7 0.05
54 121 0.89
55 8 0.06
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (53 bp):
ATTTTACCATCGAGGGTATTTCGATAATTTTACCCTTTAGGGGTATTTCGGTA
Found at i:25068056 original size:81 final size:81
Alignment explanation
Indices: 25067867--25068071 Score: 232
Period size: 81 Copynumber: 2.5 Consensus size: 81
25067857 CTACGAGCGT
* * * ** *
25067867 ATTTCGATAATTTTACCCTTTAGGGTTATCTCGGTAATTTTACCTTTCGGGGGTATTTCGGTAAT
1 ATTTTGATAATTTTACCCTTTAGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGGTAAT
** *
25067932 TTTACCTTTCGGGGGA
66 TTTACCCATCGGAGGA
* * * * * **
25067948 ATTTTGGTAATTTTACACATCAAGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGGTAAT
1 ATTTTGATAATTTTACCCTTTAGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGGTAAT
25068013 TTTACCCATC-GAGGA
66 TTTACCCATCGGAGGA
* *
25068028 TGTTTTGATAATTTTACCCTTTGGGGGTATTTCGGTAATTTTAC
1 -ATTTTGATAATTTTACCCTTTAGGGGTATTTCGGTAATTTTAC
25068072 AACCTTTTCG
Statistics
Matches: 98, Mismatches: 25, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 4 0.04
81 94 0.96
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (81 bp):
ATTTTGATAATTTTACCCTTTAGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGGTAAT
TTTACCCATCGGAGGA
Found at i:25072343 original size:27 final size:27
Alignment explanation
Indices: 25072296--25072390 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
25072286 TGTACATGTA
* * *
25072296 TGCTCACACGGGCTCTAAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
25072323 TGCTCACACGAGCTGTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
* *
25072350 TGCTCACACAAGCTGTGAAAATAGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
*
25072377 TGCTCAAACGAGCT
1 TGCTCACACGAGCT
25072391 ATGGGTCGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.19
Consensus pattern (27 bp):
TGCTCACACGAGCTGTGAAAATGGGCC
Found at i:25096881 original size:4 final size:4
Alignment explanation
Indices: 25096872--25097058 Score: 374
Period size: 4 Copynumber: 46.8 Consensus size: 4
25096862 CAAGTTGATA
25096872 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
25096920 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
25096968 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
25097016 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
25097059 ATGAGAAGTT
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 183 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Done.