Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 83 of 226
Found at i:26190712 original size:45 final size:45
Alignment explanation
Indices: 26190591--26190759 Score: 132
Period size: 45 Copynumber: 3.8 Consensus size: 45
26190581 ATATCGTTGG
* * *
26190591 AAATATAGGTGGA-TGCTATGTGCTG-ATTCCACCTGATATTAATGA
1 AAATAAAGGT-GATTGCTATGTGCTGAATT-CACCGGATATCAATGA
* * *
26190636 AAATAAAGGTGATTGTTATGTGCTGATTTCACCGGATATCAATGG
1 AAATAAAGGTGATTGCTATGTGCTGAATTCACCGGATATCAATGA
** * *
26190681 TTATATAA-GTGATTGCTATGTGCTGAATTCACCCGG-TACCATTGA
1 AAATA-AAGGTGATTGCTATGTGCTGAATTCA-CCGGATATCAATGA
** * *
26190726 GTACAAAGGTGGTTGCTATGTGCT-AATTTCACCG
1 AAATAAAGGTGATTGCTATGTGCTGAA-TTCACCG
26190760 AGTACTCTTG
Statistics
Matches: 102, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
44 9 0.09
45 85 0.83
46 8 0.08
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (45 bp):
AAATAAAGGTGATTGCTATGTGCTGAATTCACCGGATATCAATGA
Found at i:26190782 original size:45 final size:45
Alignment explanation
Indices: 26190693--26190783 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 45
26190683 ATATAAGTGA
*
26190693 TTGCTATGTGCTGAATTCACCCGGTACCATTGAGTACAAAGGTGG
1 TTGCTATGTGCTGAATTCACCCGGTACCATTGACTACAAAGGTGG
26190738 TTGCTATGTGCT-AATTTCA-CCGAGTACTC-TTGACTA-AAAGGGTGG
1 TTGCTATGTGCTGAA-TTCACCCG-GTAC-CATTGACTACAAA-GGTGG
26190783 T
1 T
26190784 GTTGTGTGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
44 8 0.20
45 32 0.78
46 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (45 bp):
TTGCTATGTGCTGAATTCACCCGGTACCATTGACTACAAAGGTGG
Found at i:26192199 original size:20 final size:22
Alignment explanation
Indices: 26192176--26192215 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26192166 GGTGAGAAGT
26192176 AAAAG-TTTAGGGAA-AAAATA
1 AAAAGTTTTAGGGAATAAAATA
26192196 AAAAGTTTTAGGGAATAAAA
1 AAAAGTTTTAGGGAATAAAA
26192216 GTTTGAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (22 bp):
AAAAGTTTTAGGGAATAAAATA
Found at i:26192217 original size:16 final size:16
Alignment explanation
Indices: 26192196--26192226 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26192186 GGAAAAAATA
*
26192196 AAAAGTTTTAGGGAAT
1 AAAAGTTTGAGGGAAT
26192212 AAAAGTTTGAGGGAA
1 AAAAGTTTGAGGGAA
26192227 AGTAAATAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (16 bp):
AAAAGTTTGAGGGAAT
Found at i:26192351 original size:30 final size:31
Alignment explanation
Indices: 26192312--26192371 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
26192302 GGAGGTGGGA
*
26192312 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
26192343 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
26192372 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:26192599 original size:9 final size:9
Alignment explanation
Indices: 26192585--26192621 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26192575 TATAGTTTGA
26192585 TATTCGAAT
1 TATTCGAAT
26192594 TATTCGAAT
1 TATTCGAAT
*
26192603 TATTCGAGT
1 TATTCGAAT
26192612 TATTCGAAT
1 TATTCGAAT
26192621 T
1 T
26192622 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26194846 original size:21 final size:22
Alignment explanation
Indices: 26194787--26194850 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
26194777 CAAAAGTAGT
* * *
26194787 ATACAACACATAAAGTGCCTGG
1 ATACGACACATATAGTGCCTGA
** *
26194809 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
26194829 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
26194851 TCTGCAAGGC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 1 0.03
21 28 0.90
22 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:26201440 original size:21 final size:21
Alignment explanation
Indices: 26201416--26201456 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26201406 CATGTTTTGG
26201416 TTTCTATATTAAGTTCATGTC
1 TTTCTATATTAAGTTCATGTC
* *
26201437 TTTCTGTATTAAGTTGATGT
1 TTTCTATATTAAGTTCATGT
26201457 ATGGCAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.10, G:0.15, T:0.54
Consensus pattern (21 bp):
TTTCTATATTAAGTTCATGTC
Found at i:26202678 original size:49 final size:49
Alignment explanation
Indices: 26202621--26202724 Score: 174
Period size: 49 Copynumber: 2.1 Consensus size: 49
26202611 TCATGTGTTA
* *
26202621 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGATATTGA-ACTTAATTT
1 TAATTTTATAAAATGTTGACCTTTTGATTCATGATATT-ACACTTAATTT
26202670 TAATTTTATAAAATGTTGACCTTTTGATTCATGATATTACACTTAATTT
1 TAATTTTATAAAATGTTGACCTTTTGATTCATGATATTACACTTAATTT
26202719 TAATTT
1 TAATTT
26202725 GTTTTTTTCT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
48 1 0.02
49 51 0.98
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAATGTTGACCTTTTGATTCATGATATTACACTTAATTT
Found at i:26204161 original size:24 final size:23
Alignment explanation
Indices: 26204112--26204162 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
26204102 TAAAGTAGAT
* *
26204112 TATATATGATTTTTATAGTATTA
1 TATATATGATTTTAATAGAATTA
26204135 TATATTATGATTTTAATA-AATTCA
1 TATA-TATGATTTTAATAGAATT-A
26204159 TATA
1 TATA
26204163 AGAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (23 bp):
TATATATGATTTTAATAGAATTA
Found at i:26204194 original size:17 final size:18
Alignment explanation
Indices: 26204169--26204214 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
26204159 TATAAGAATA
*
26204169 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
26204186 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
26204204 ATTAAATTATA
1 ATTAAATTATA
26204215 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:26204211 original size:55 final size:54
Alignment explanation
Indices: 26204145--26204261 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
26204135 TATATTATGA
* * *
26204145 TTTTAATAAATTCATA-TAAGAATAATTATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATTAAGAATAATTATATTAA-AATATGATTAAATTATATAT
* * *
26204200 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAT
1 TTTTATTAAATTATA-TTAAGAATAATTATATTAAAATATGATTAAATTATATAT
26204255 TATTTAT
1 T-TTTAT
26204262 ATTAATAATC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
54 3 0.06
55 29 0.55
56 21 0.40
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (54 bp):
TTTTATTAAATTATATTAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:26204463 original size:45 final size:44
Alignment explanation
Indices: 26204375--26204463 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
26204365 ATTACAATAT
* *
26204375 CATTTCATTCAACCAAATACAAGAATACTATTACAGTTTTATTC
1 CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
*
26204419 CATTCCATTCAACCAAATA-ATTGAATTACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAATACA-AGAA-TACTATTACAGTTCTATTC
26204464 TATTACAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 1 0.03
44 21 0.52
45 18 0.45
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.37
Consensus pattern (44 bp):
CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
Found at i:26204468 original size:16 final size:16
Alignment explanation
Indices: 26204447--26204486 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26204437 AATTGAATTA
26204447 CTATTACAGTTCTATT
1 CTATTACAGTTCTATT
*
26204463 CTATTACAGTTTTATT
1 CTATTACAGTTCTATT
*
26204479 CCATTACA
1 CTATTACA
26204487 ACGAACCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.47
Consensus pattern (16 bp):
CTATTACAGTTCTATT
Found at i:26204653 original size:6 final size:6
Alignment explanation
Indices: 26204644--26204675 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
26204634 ACCAAAAACT
*
26204644 AAAAGC AAAAGC AAAAGT AAAAGC AAAAGC AA
1 AAAAGC AAAAGC AAAAGC AAAAGC AAAAGC AA
26204676 TCATCTGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.69, C:0.12, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAAGC
Found at i:26204664 original size:18 final size:18
Alignment explanation
Indices: 26204638--26204675 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26204628 GCAGAAACCA
26204638 AAAACTAAAAGCAAAAGC
1 AAAACTAAAAGCAAAAGC
*
26204656 AAAAGTAAAAGCAAAAGC
1 AAAACTAAAAGCAAAAGC
26204674 AA
1 AA
26204676 TCATCTGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.13, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAACTAAAAGCAAAAGC
Found at i:26208167 original size:31 final size:31
Alignment explanation
Indices: 26208132--26208208 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
26208122 TGTAATTTTT
*
26208132 ATAGTTGGATGACTAAAAAGGATATTTACTA
1 ATAGTTGGATGACTAAAAAGGAAATTTACTA
* * * *
26208163 ATAGTT-AAGTAACCAAAAATGAAATTTACTA
1 ATAGTTGGA-TGACTAAAAAGGAAATTTACTA
26208194 ATAGTTAGG-TGACTA
1 ATAGTT-GGATGACTA
26208209 CTAGTGTAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
30 1 0.03
31 34 0.97
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (31 bp):
ATAGTTGGATGACTAAAAAGGAAATTTACTA
Found at i:26211847 original size:6 final size:6
Alignment explanation
Indices: 26211836--26211957 Score: 190
Period size: 6 Copynumber: 20.3 Consensus size: 6
26211826 GTAACCAGTG
26211836 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT
**
26211884 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT TTCCAT
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT
* * * *
26211932 CTCCAT CTCCAT CTCCAT CTCCAT CA
1 CACCAT CACCAT CACCAT CACCAT CA
26211958 TCTTCAAGTG
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 112 1.00
ACGTcount: A:0.30, C:0.49, G:0.00, T:0.21
Consensus pattern (6 bp):
CACCAT
Found at i:26222458 original size:132 final size:132
Alignment explanation
Indices: 26222219--26222480 Score: 472
Period size: 132 Copynumber: 2.0 Consensus size: 132
26222209 TTTGTACATT
26222219 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
1 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
** * *
26222284 TCATTATAAGCTTTCTTCCTCTCCGCATCTCATATGGTGCCATCCTTGTTTTAGGCTTCAAAGTA
66 TCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGTA
26222349 TC
131 TC
26222351 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTTCC-CAAAACATAAAAATAA
1 AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGC-TCCGCAAAACATAAAAATAA
26222415 GTCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGT
65 GTCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGT
26222480 A
130 A
26222481 CATTGTTAAT
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
132 122 0.98
133 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (132 bp):
AAAATTTCCCTGATAAGCATGATCTTTGAAAAGGTAATAAGTGCTCCGCAAAACATAAAAATAAG
TCACGATAAGCTTTCTTCCTCTCCACATCTCATATGGAGCCATCCTTGTTTTAGGCTTCAAAGTA
TC
Found at i:26223584 original size:26 final size:26
Alignment explanation
Indices: 26223547--26223606 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
26223537 TTAGGGTTTG
*
26223547 TTTTTTTAAAAAAGAAAGCAGAAAGT
1 TTTTTTTTAAAAAGAAAGCAGAAAGT
26223573 TTTTTTTTAAAAAGAAAGCAGAAAGT
1 TTTTTTTTAAAAAGAAAGCAGAAAGT
26223599 TTTTTTTT
1 TTTTTTTT
26223607 TAGGAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (26 bp):
TTTTTTTTAAAAAGAAAGCAGAAAGT
Found at i:26223607 original size:27 final size:27
Alignment explanation
Indices: 26223542--26223608 Score: 109
Period size: 26 Copynumber: 2.4 Consensus size: 27
26223532 CCTAGTTAGG
26223542 GTTTGTTTTTTTAAAAAAGAAAGCAGAAA
1 GTTT-TTTTTTT-AAAAAGAAAGCAGAAA
26223571 G-TTTTTTTTTAAAAAGAAAGCAGAAA
1 GTTTTTTTTTTAAAAAGAAAGCAGAAA
26223597 GTTTTTTTTTTA
1 GTTTTTTTTTTA
26223609 GGAAATATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
26 17 0.46
27 17 0.46
28 2 0.05
29 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.43
Consensus pattern (27 bp):
GTTTTTTTTTTAAAAAGAAAGCAGAAA
Found at i:26224025 original size:13 final size:13
Alignment explanation
Indices: 26223992--26224025 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
26223982 TGCTCTACCA
26223992 TTATTATTTTTTG
1 TTATTATTTTTTG
26224005 -TATATATTTTTTG
1 TTAT-TATTTTTTG
26224018 TTATTATT
1 TTATTATT
26224026 ATTAACATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.16
13 13 0.68
14 3 0.16
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (13 bp):
TTATTATTTTTTG
Found at i:26228357 original size:15 final size:15
Alignment explanation
Indices: 26228337--26228368 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26228327 CATTTCACTA
*
26228337 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
26228352 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
26228367 TT
1 TT
26228369 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:26230123 original size:22 final size:20
Alignment explanation
Indices: 26230091--26230146 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
26230081 ATTAACATTC
*
26230091 TATTATTTTAATAAGAT-TTAA
1 TATTAATTTAATAA-ATATT-A
26230112 TATTAAATTTAATCAAATATTA
1 TATT-AATTTAAT-AAATATTA
26230134 TATTAATTTAATA
1 TATTAATTTAATA
26230147 TTAAAGTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.03
21 12 0.39
22 14 0.45
23 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
TATTAATTTAATAAATATTA
Found at i:26230146 original size:16 final size:17
Alignment explanation
Indices: 26230106--26230151 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
26230096 TTTTAATAAG
26230106 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
** *
26230123 ATCAAATATTATA-TTA
1 ATTTAATATTAAATTTA
26230139 ATTTAATATTAAA
1 ATTTAATATTAAA
26230152 GTGATTAAGT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:26239178 original size:21 final size:21
Alignment explanation
Indices: 26239152--26239199 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
26239142 AGGAGCTTAT
26239152 GGAACTAAAAGCTCAACTTCA
1 GGAACTAAAAGCTCAACTTCA
*
26239173 GGAACTGAAAGCTCAACTTCA
1 GGAACTAAAAGCTCAACTTCA
26239194 GGAACT
1 GGAACT
26239200 TCTCGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.19
Consensus pattern (21 bp):
GGAACTAAAAGCTCAACTTCA
Found at i:26241868 original size:25 final size:25
Alignment explanation
Indices: 26241839--26241886 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
26241829 CAATTTCTAC
26241839 ATTTGTTTAAACCAGGTAAATTTGT
1 ATTTGTTTAAACCAGGTAAATTTGT
*
26241864 ATTTGTTTGAACCAGGTAAATTT
1 ATTTGTTTAAACCAGGTAAATTT
26241887 CGAGGCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (25 bp):
ATTTGTTTAAACCAGGTAAATTTGT
Found at i:26245009 original size:21 final size:21
Alignment explanation
Indices: 26244969--26245007 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
26244959 ATTAATAAAA
26244969 GAATAATCATATATTCTTTTG
1 GAATAATCATATATTCTTTTG
26244990 GAATAAT-ATA-ATTCTTTT
1 GAATAATCATATATTCTTTT
26245008 TTCTAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (21 bp):
GAATAATCATATATTCTTTTG
Found at i:26245039 original size:74 final size:76
Alignment explanation
Indices: 26244903--26245050 Score: 183
Period size: 74 Copynumber: 2.0 Consensus size: 76
26244893 TTGGAAATTA
* *
26244903 ATATTCTTTTGAAACGAAAATAATTCTTTTTTTTCAACTATTCATTTACATTATCTATTAATAAA
1 ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
26244968 AGAATAATCAT
66 AGAATAATCAT
* * * * * * * *
26244979 ATATTCTTTTGGAA-TAATATAATTCTTTTTTCT-AACTTTTCATTTTCCTTCTCTACTAATAAG
1 ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
*
26245042 GGAATAATC
66 AGAATAATC
26245051 CTAATTTTCT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 32 0.52
75 16 0.26
76 13 0.21
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.47
Consensus pattern (76 bp):
ATATTCTTTTGAAACGAAAATAATTCTTTTTTCTCAACTATTCATTTACATTATCTACTAATAAA
AGAATAATCAT
Found at i:26247030 original size:30 final size:30
Alignment explanation
Indices: 26246977--26247061 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 30
26246967 GTATCAGTGC
* **
26246977 AGTGTGGGCCTTAACCCGTTACAGTAACAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAA-AAT
*
26247008 A-TGTGGGTCTTAGCCCAATACAGT--AAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAAAT
*
26247035 AGTGTGGGCCTTAGCCCAATATAGTAA
1 AGTGTGGGCCTTAGCCCAATACAGTAA
26247062 TTAGTACAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
27 4 0.09
28 21 0.47
30 19 0.42
31 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (30 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAAAT
Found at i:26247443 original size:27 final size:27
Alignment explanation
Indices: 26247413--26247865 Score: 544
Period size: 27 Copynumber: 16.8 Consensus size: 27
26247403 TAATTTCTAG
* *
26247413 GGGTATATCAGTCATTTTACCCTAT-AA
1 GGGTATTTCAGTCATTTTACCCT-TCGA
*
26247440 GGGTATTTCAGTCATTTTACCTTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
26247467 GGGTATTTC-GATCATTTTACCCTTCAA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
* *
26247494 GGGTATGTT-GGTCATTTTACCCTTCGG
1 GGGTAT-TTCAGTCATTTTACCCTTCGA
*
26247521 GGGTATTTCAATCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
* * *
26247548 GGGTATTTTAGTCATTTTACCTTTCGG
1 GGGTATTTCAGTCATTTTACCCTTCGA
** * *
26247575 GGGTATTTTGGTTATTTTACCCTTCGG
1 GGGTATTTCAGTCATTTTACCCTTCGA
* *
26247602 GGGTATTTCGGTCATTTTACCCTTTGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
26247629 GGGTATTTC-GATCATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
* *
26247656 GGGTATTTCAGTCATGTTACCCTAT-AA
1 GGGTATTTCAGTCATTTTACCCT-TCGA
* *
26247683 GGGTATTTCAGTCATTTTACTCTTTGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
**
26247710 GGGTATTTTGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
26247737 GGGTATTTC-GATCATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTCGA
* *
26247764 GGGTATTTCAGTTATTTTACCATTC-A
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
26247790 GGGGTATTTCAGTCATTTTACCCTTTGA
1 -GGGTATTTCAGTCATTTTACCCTTCGA
*
26247818 GGGTATTTCAGTTATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
26247845 GGGTATTTC-GATCATTTTACC
1 GGGTATTTCAG-TCATTTTACC
26247866 ACGAATCGTA
Statistics
Matches: 372, Mismatches: 40, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.02
27 356 0.96
28 7 0.02
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTTCGA
Found at i:26258569 original size:26 final size:26
Alignment explanation
Indices: 26258514--26258569 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
26258504 CCTATGTAGG
*
26258514 CCCACACACTCGTGTGGCCCACACGG
1 CCCACACACTCGTGTGGCCCACACGA
26258540 CCCACACACTCGTGTGGCCTC-CACGA
1 CCCACACACTCGTGTGGCC-CACACGA
26258566 CCCA
1 CCCA
26258570 AAATGGCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.20, C:0.48, G:0.20, T:0.12
Consensus pattern (26 bp):
CCCACACACTCGTGTGGCCCACACGA
Found at i:26261261 original size:45 final size:45
Alignment explanation
Indices: 26261205--26261364 Score: 207
Period size: 45 Copynumber: 3.6 Consensus size: 45
26261195 TTGGCTTGAA
*
26261205 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATTGG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
* *
26261250 AAACAAATAAGATCATAGTTGAAAGACACTATGACACTATATCGG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
* * * * *
26261295 AAATGAATAGGACCATAGTTTAAAGACACTATGGCAAC-ATGA-CAG
1 AAACGAATAAGACCATAGTTGAAAGACACTATGAC-ACTAT-ATCGG
*
26261340 AAATGAATAAGACCATAGTTGAAAG
1 AAACGAATAAGACCATAGTTGAAAG
26261365 TGTTGGAATG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
45 98 0.97
46 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (45 bp):
AAACGAATAAGACCATAGTTGAAAGACACTATGACACTATATCGG
Found at i:26265082 original size:27 final size:27
Alignment explanation
Indices: 26265045--26265106 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
26265035 AAACTCCAGA
*
26265045 AAAGGAATGCCTTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGGAAATATATG
*
26265072 AAAGGAATGCCTTTGTGGAAATGTATG
1 AAAGGAATGCCTTTGTGGAAATATATG
26265099 AAAGGAAT
1 AAAGGAAT
26265107 TCATTGACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGAAATATATG
Found at i:26266908 original size:22 final size:22
Alignment explanation
Indices: 26266877--26266945 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
26266867 TACTAGTGGC
26266877 TTATCCACATATTTCTTGCAGT
1 TTATCCACATATTTCTTGCAGT
** * *
26266899 TTATTTACATA--TCTAGTAGT
1 TTATCCACATATTTCTTGCAGT
26266919 TTATCCACATATTT-TTGGCAGT
1 TTATCCACATATTTCTT-GCAGT
26266941 TTATC
1 TTATC
26266946 TGCAAATACT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 16 0.44
21 1 0.03
22 19 0.53
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (22 bp):
TTATCCACATATTTCTTGCAGT
Found at i:26266928 original size:20 final size:20
Alignment explanation
Indices: 26266877--26266930 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
26266867 TACTAGTGGC
*
26266877 TTATCCACATATTTCTTGCAGT
1 TTATCCACATA--TCTAGCAGT
** *
26266899 TTATTTACATATCTAGTAGT
1 TTATCCACATATCTAGCAGT
26266919 TTATCCACATAT
1 TTATCCACATAT
26266931 TTTTGGCAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 17 0.65
22 9 0.35
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (20 bp):
TTATCCACATATCTAGCAGT
Found at i:26275104 original size:23 final size:24
Alignment explanation
Indices: 26275064--26275116 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
26275054 TATTTTGAAA
*
26275064 ATATATTAAAAATAAAAAACTAT-T
1 ATATTTTAAAAATAAAAAA-TATAT
26275088 ATATTTTAAAAAT-AAAAATATAT
1 ATATTTTAAAAATAAAAAATATAT
26275111 ATATTT
1 ATATTT
26275117 AATATATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 3 0.11
23 12 0.44
24 12 0.44
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATATTTTAAAAATAAAAAATATAT
Found at i:26275117 original size:22 final size:22
Alignment explanation
Indices: 26275064--26275118 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
26275054 TATTTTGAAA
26275064 ATATA-TTAAAAATAAAAAACT
1 ATATATTTAAAAATAAAAAACT
26275085 ATTATATTTTAAAAATAAAAATA-T
1 A-TATA-TTTAAAAATAAAAA-ACT
26275109 ATATATTTAA
1 ATATATTTAA
26275119 TATATTTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.03
22 9 0.30
23 4 0.13
24 15 0.50
25 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATATTTAAAAATAAAAAACT
Found at i:26275216 original size:31 final size:33
Alignment explanation
Indices: 26275181--26275251 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 33
26275171 GTTTTCTAAA
*
26275181 CGGGCCTAAATTTTTGCCC-AAG-CCCATATTT
1 CGGGCCTAAATTTTTACCCGAAGCCCCATATTT
*
26275212 CGGGCCTATATTTTTACCCGAAGCCTCCCATATTT
1 CGGGCCTAAATTTTTACCCGAAG-C-CCCATATTT
26275247 CGGGC
1 CGGGC
26275252 GGATCGTCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 17 0.50
32 3 0.09
35 14 0.41
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (33 bp):
CGGGCCTAAATTTTTACCCGAAGCCCCATATTT
Found at i:26280841 original size:12 final size:13
Alignment explanation
Indices: 26280808--26280849 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
26280798 AGTGTTAACA
*
26280808 TGAATTTATGATT
1 TGAATTTGTGATT
*
26280821 TG-ATATGTGA-T
1 TGAATTTGTGATT
26280832 TGAATTTGTGATT
1 TGAATTTGTGATT
26280845 TGAAT
1 TGAAT
26280850 AATGGTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 3 0.12
12 13 0.54
13 8 0.33
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (13 bp):
TGAATTTGTGATT
Found at i:26282865 original size:26 final size:26
Alignment explanation
Indices: 26282793--26282865 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
26282783 CATTAGGGCG
*
26282793 TAGCAGGCTTCGTGCCGGTGTATATT
1 TAGCAGGCTTCGTGCCGATGTATATT
*
26282819 TAGCAGGCTTCGTGCCAATGTATATT
1 TAGCAGGCTTCGTGCCGATGTATATT
* * *
26282845 TAGCAAGCTTTGTGTCGATGT
1 TAGCAGGCTTCGTGCCGATGT
26282866 TTTTAGTAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (26 bp):
TAGCAGGCTTCGTGCCGATGTATATT
Found at i:26284444 original size:42 final size:41
Alignment explanation
Indices: 26284325--26284489 Score: 111
Period size: 43 Copynumber: 3.9 Consensus size: 41
26284315 GGAAACACAT
* * * *
26284325 ATATCACATACAATGCC-ATATCCCAAATATGGTCTTACATGTT
1 ATATCATAT-CAATGCCAATGTCCCAAACATGGTCTTAC--GTA
* * * * * *
26284368 AT-TACATATTAATGTCACTGTCCCAGACAGGGTCTTATGTGA
1 ATAT-CATATCAATGCCAATGTCCCAAACATGGTCTTACGT-A
* *
26284410 A-ATCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTA
1 ATATCATAT-CAATGCCAATGTCCCAAACATGGTCTT--ACGTA
* *
26284453 ATCTCATATCAATGCCAATGTCCCAGACATGGTCTTA
1 ATATCATATCAATGCCAATGTCCCAAACATGGTCTTA
26284490 GACGAAATCA
Statistics
Matches: 92, Mismatches: 22, Indels: 18
0.70 0.17 0.14
Matches are distributed among these distances:
41 8 0.09
42 28 0.30
43 47 0.51
44 9 0.10
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (41 bp):
ATATCATATCAATGCCAATGTCCCAAACATGGTCTTACGTA
Found at i:26284474 original size:43 final size:44
Alignment explanation
Indices: 26284412--26284498 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
26284402 TTATGTGAAA
* * *
26284412 TCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTAATC
1 TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
* *
26284456 TCATAT-CAATGCCAATGTCCCAGACATGGTCTTAGACGAAATC
1 TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
26284499 ACACCCCGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 32 0.84
44 6 0.16
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
TCATATACAATGCCAATGTCCCAAACATGGTCTTACACGAAATC
Found at i:26284475 original size:85 final size:84
Alignment explanation
Indices: 26284327--26284489 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 84
26284317 AAACACATAT
* * * * * *
26284327 ATCACATACAATGCCATATCCCAAATATGGTCTTACATGTTATTACATATTAATGTCACTGTCCC
1 ATCACATACAATGCCATATCCCAAACATGGTCTTACACGTAATTACATATCAATGCCAATGTCCC
26284392 AGACAGGGTCTTATGTGAA
66 AGACAGGGTCTTATGTGAA
* * * *
26284411 ATCATATACGATGCCAATGTCCTAAACATGGTCTTACACGTAATCT-CATATCAATGCCAATGTC
1 ATCACATACAATGCC-ATATCCCAAACATGGTCTTACACGTAAT-TACATATCAATGCCAATGTC
*
26284475 CCAGACATGGTCTTA
64 CCAGACAGGGTCTTA
26284490 GACGAAATCA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 13 0.20
85 52 0.79
86 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (84 bp):
ATCACATACAATGCCATATCCCAAACATGGTCTTACACGTAATTACATATCAATGCCAATGTCCC
AGACAGGGTCTTATGTGAA
Found at i:26288119 original size:25 final size:25
Alignment explanation
Indices: 26288060--26288107 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26288050 CATGATTTGT
*
26288060 AAATCGATAAGCTCATACAAGCTAC
1 AAATCGGTAAGCTCATACAAGCTAC
* *
26288085 AAATCAGTAAGCTCATACGAGCT
1 AAATCGGTAAGCTCATACAAGCT
26288108 GAGAATCGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.21
Consensus pattern (25 bp):
AAATCGGTAAGCTCATACAAGCTAC
Found at i:26297072 original size:27 final size:27
Alignment explanation
Indices: 26296770--26297072 Score: 290
Period size: 27 Copynumber: 11.2 Consensus size: 27
26296760 TTATACTTTT
* * * *
26296770 ATGAGCAAAATATCTTCATATGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
*
26296797 ATGATCC-AAATACCCCTCATAGGGTAGA
1 ATGA-CCAAAATA-CCCTCATAGGGTAAA
* **
26296825 ATGATCGCAATA-CCTCCATAGGGTAAA
1 ATGACCAAAATACCCT-CATAGGGTAAA
* * * *
26296852 ATGATCGAAATA-CCTCCATAGGATAGA
1 ATGACCAAAATACCCT-CATAGGGTAAA
*
26296879 ATGACCAAAATACCCTAATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
*
26296906 ATGACCAAAATACCAC-CATAAGGTAAA
1 ATGACCAAAATACC-CTCATAGGGTAAA
** *
26296933 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* * *
26296960 ATAATCGAAATACCCTCATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* * * *
26296987 ATAACCAAAATACCCCCATAGGATAGA
1 ATGACCAAAATACCCTCATAGGGTAAA
* *
26297014 ATGACCGAAATACCCTCATAGGATAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
*
26297041 ATGACCAAAATACCCTCATAGGATAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
26297068 ATGAC
1 ATGAC
26297073 TGTTGTACCC
Statistics
Matches: 234, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.02
27 206 0.88
28 24 0.10
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
ATGACCAAAATACCCTCATAGGGTAAA
Found at i:26297083 original size:81 final size:80
Alignment explanation
Indices: 26296785--26297072 Score: 330
Period size: 81 Copynumber: 3.5 Consensus size: 80
26296775 CAAAATATCT
* * ** *
26296785 TCATATGG-TAAAATGATCC-AAATACCCCTCATAGGGTAGAATGATCGCAATACCTCCATAGGG
1 TCATA-GGATAAAATGA-CCAAAATA-CCCTCATAGGGTAAAATGACCAAAATACCCCCATA-GG
*
26296848 TAAAATGATCGAAATA-CC
62 TAAAATGACCGAAATACCC
* * *
26296866 TCCATAGGATAGAATGACCAAAATACCCTAATAGGGTAAAATGACCAAAATACCACCATAAGGTA
1 T-CATAGGATAAAATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCAT-AGGTA
*
26296931 AAATGACTGAAATACCC
64 AAATGACCGAAATACCC
* * * * * * *
26296948 CCATAGGGTAAAATAATCGAAATACCCTCATAGGGTAAAATAACCAAAATACCCCCATAGGATAG
1 TCATAGGATAAAATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGG-TAA
26297013 AATGACCGAAATACCC
65 AATGACCGAAATACCC
*
26297029 TCATAGGATAAAATGACCAAAATACCCTCATAGGATAAAATGAC
1 TCATAGGATAAAATGACCAAAATACCCTCATAGGGTAAAATGAC
26297073 TGTTGTACCC
Statistics
Matches: 174, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
80 3 0.02
81 152 0.87
82 19 0.11
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (80 bp):
TCATAGGATAAAATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGTAAA
ATGACCGAAATACCC
Found at i:26303658 original size:39 final size:39
Alignment explanation
Indices: 26303610--26303692 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
26303600 ATCATAATTA
26303610 TAATAATTCATGAAAAGTATTTGCAACACCAACCATAAT
1 TAATAATTCATGAAAAGTATTTGCAACACCAACCATAAT
*
26303649 TAATAATTCATGAAAAGTGTTTGCAACACCAACCATAAT
1 TAATAATTCATGAAAAGTATTTGCAACACCAACCATAAT
26303688 TAATA
1 TAATA
26303693 TATTAATAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (39 bp):
TAATAATTCATGAAAAGTATTTGCAACACCAACCATAAT
Found at i:26305881 original size:24 final size:23
Alignment explanation
Indices: 26305789--26305882 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 23
26305779 AATTCATATT
*
26305789 CGGGAATGCTCATACGAGCACTTAAA
1 CGGGAA-GCTC-TACGAGC-CTTTAA
* * *
26305815 CAGGAAGCTCTTTCGAGCCATATAA
1 CGGGAAGCTC-TACGAGCC-TTTAA
*
26305840 CGGGAAGCTCTAGAGAGCCTTTAA
1 CGGGAAGCTCTA-CGAGCCTTTAA
*
26305864 CGGGAATCTCGTACGAGCC
1 CGGGAAGCTC-TACGAGCC
26305883 AATATCAGGA
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
24 20 0.37
25 29 0.54
26 5 0.09
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (23 bp):
CGGGAAGCTCTACGAGCCTTTAA
Found at i:26305965 original size:15 final size:15
Alignment explanation
Indices: 26305945--26305986 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
26305935 ATCAGGAAGC
* *
26305945 TCATAAGCGCCATTA
1 TCATAAGAGCCAATA
26305960 TCATAAGAGCCAATA
1 TCATAAGAGCCAATA
26305975 TCATAAGAGCCA
1 TCATAAGAGCCA
26305987 GCTATCGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.21
Consensus pattern (15 bp):
TCATAAGAGCCAATA
Found at i:26306011 original size:25 final size:23
Alignment explanation
Indices: 26305975--26306024 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
26305965 AGAGCCAATA
*
26305975 TCATAAGAGCCAGCTATCGAGAAGC
1 TCATAAGAGCCA--TAACGAGAAGC
*
26306000 TCATAAGCGCCATAACGAGAAGC
1 TCATAAGAGCCATAACGAGAAGC
26306023 TC
1 TC
26306025 GCAAGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (23 bp):
TCATAAGAGCCATAACGAGAAGC
Found at i:26306092 original size:24 final size:25
Alignment explanation
Indices: 26306036--26306098 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
26306026 CAAGAACCAT
* *
26306036 ATAACGGGAAGCTCGTGAGAGCCAA
1 ATAACGGGATGCTCATGAGAGCCAA
* *
26306061 ATATCGGGATGCTCATGAGAG-CTA
1 ATAACGGGATGCTCATGAGAGCCAA
26306085 ATAACGGGATGCTC
1 ATAACGGGATGCTC
26306099 TTTCGGAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (25 bp):
ATAACGGGATGCTCATGAGAGCCAA
Found at i:26307403 original size:29 final size:31
Alignment explanation
Indices: 26307371--26307432 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
26307361 CGTCATTCCT
*
26307371 TTTTTTAATAAATGACCCAATAT-TTT-TAC
1 TTTTTGAATAAATGACCCAATATGTTTATAC
** *
26307400 TTTTTGCGTAAATGGCCCAATATGTTTATAC
1 TTTTTGAATAAATGACCCAATATGTTTATAC
26307431 TT
1 TT
26307433 CTTCTTCTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 19 0.70
30 3 0.11
31 5 0.19
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.47
Consensus pattern (31 bp):
TTTTTGAATAAATGACCCAATATGTTTATAC
Found at i:26308451 original size:20 final size:20
Alignment explanation
Indices: 26308426--26308474 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
26308416 TTCAAAAGTT
26308426 GAGTGACTGAATTGAAATCA
1 GAGTGACTGAATTGAAATCA
*
26308446 GAGTGACTGAATTGAAATTA
1 GAGTGACTGAATTGAAATCA
26308466 GAGTGACTG
1 GAGTGACTG
26308475 TTTTGTCAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.29, T:0.27
Consensus pattern (20 bp):
GAGTGACTGAATTGAAATCA
Found at i:26310267 original size:24 final size:24
Alignment explanation
Indices: 26310235--26310283 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26310225 TCTACTCGTA
26310235 TTATGGTATGATTTTCATAATCAT
1 TTATGGTATGATTTTCATAATCAT
26310259 TTATGGTATGATTTTCATAATCAT
1 TTATGGTATGATTTTCATAATCAT
26310283 T
1 T
26310284 CTTCTTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.51
Consensus pattern (24 bp):
TTATGGTATGATTTTCATAATCAT
Found at i:26317945 original size:43 final size:43
Alignment explanation
Indices: 26317898--26317979 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
26317888 ATCTTGTATA
26317898 GATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATC
1 GATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATC
*
26317941 GATGTCAATAGCCCAGCTATGGTCTTATACGAAATCTCA
1 GATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
26317980 CCTCAGAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATC
Found at i:26318130 original size:30 final size:30
Alignment explanation
Indices: 26318094--26318176 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 30
26318084 ATCCAATGCT
*
26318094 CAAATCAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGCAATATATATCCACATA
* *
26318124 CGAATCAAATTCGGCAATATATATCTACATA
1 CAAATC-AATTCGGCAATATATATCCACATA
* *
26318155 CAAATCAATTCGGTAATGTATA
1 CAAATCAATTCGGCAATATATA
26318177 AAACATATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 19 0.41
31 27 0.59
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATCCACATA
Found at i:26323671 original size:60 final size:62
Alignment explanation
Indices: 26323607--26323766 Score: 173
Period size: 63 Copynumber: 2.6 Consensus size: 62
26323597 AAGTAGGTTA
** *
26323607 TATATTAATTTTCTAA-T-ATTAT-TAATTATTATTTTTATTAATTTATATTTTAATAATAAT
1 TATATTAATAATCTAATTAATTATAT-ATTATTATTTTTATTAATTCATATTTTAATAATAAT
* * *
26323667 TATATTAAGAATGTAATTAAATTATATATTTTTATTTTTATTAATTCATATTTTAATAATAAT
1 TATATTAATAATCTAATT-AATTATATATTATTATTTTTATTAATTCATATTTTAATAATAAT
* * * * *
26323730 CATATTAATAATGTTAATAAATTAAATATTTTTATTT
1 TATATTAATAAT-CTAATTAATTATATATTATTATTT
26323767 AATAAAAATC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
60 12 0.14
61 1 0.01
63 66 0.79
64 5 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (62 bp):
TATATTAATAATCTAATTAATTATATATTATTATTTTTATTAATTCATATTTTAATAATAAT
Found at i:26323705 original size:63 final size:63
Alignment explanation
Indices: 26323635--26323766 Score: 212
Period size: 63 Copynumber: 2.1 Consensus size: 63
26323625 TTATTAATTA
* * *
26323635 TTATTTTTATTAATTTATATTTTAATAATAATTATATTAAGAATG-TAATTAAATTATATATTT
1 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAA-TAAATTAAATATTT
*
26323698 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAATAATGTTAATAAATTAAATATTT
1 TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAATAAATTAAATATTT
26323761 TTATTT
1 TTATTT
26323767 AATAAAAATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 61 0.95
64 3 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (63 bp):
TTATTTTTATTAATTCATATTTTAATAATAATCATATTAAGAATGTTAATAAATTAAATATTT
Found at i:26327761 original size:21 final size:21
Alignment explanation
Indices: 26327735--26327790 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
26327725 AACAGTGGTG
* *
26327735 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGCA
*
26327756 GCGGTGAGATTGGATACTGCA
1 GCGGTGAGATTAGATACTGCA
26327777 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
26327791 AACAATGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.11, G:0.38, T:0.27
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGCA
Found at i:26332961 original size:17 final size:16
Alignment explanation
Indices: 26332935--26332966 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26332925 ATATATAATT
26332935 AAAAAATAATTACATA
1 AAAAAATAATTACATA
26332951 AAAATAATAATTACAT
1 AAAA-AATAATTACAT
26332967 CCTAAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATAATTACATA
Found at i:26333312 original size:28 final size:28
Alignment explanation
Indices: 26333280--26333335 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26333270 TCCTAGGCCA
26333280 GGTCGGGTCGGAGCCGGGTCGGCCTCCC
1 GGTCGGGTCGGAGCCGGGTCGGCCTCCC
*
26333308 GGTCGGGTCGGAGCTGGGTCGGCCTCCC
1 GGTCGGGTCGGAGCCGGGTCGGCCTCCC
26333336 CAAAACGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.04, C:0.34, G:0.46, T:0.16
Consensus pattern (28 bp):
GGTCGGGTCGGAGCCGGGTCGGCCTCCC
Found at i:26334576 original size:44 final size:43
Alignment explanation
Indices: 26334489--26335213 Score: 219
Period size: 44 Copynumber: 16.8 Consensus size: 43
26334479 ACTAAATACG
* *
26334489 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGA-T-CCAAGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACC--GGCTTTA
** * * *
26334532 ATCCACTCCACTACAACTTCAGGAAGATAGGATTATCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAGG-AGATAGGATTACCGGCTTTA
*
26334576 ATCTGCTCTACTGCAACTTCAGCGGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* * ** *
26334620 ATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * * ** *
26334665 GTCTGC-CTCACTGCAACTTCAGAAGGATAAGACTAAATGG----G
1 ATCTGCTCT-ACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * * *
26334706 ATCTGCTCT-CTGGAACTTCAGAGAGATAAGATCTA-AGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTTA
* * *
26334749 ATCCGC-CCACTGCAACTTCAGTGGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* * ** ** *
26334792 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * * * ** *
26334837 GTCTGC-CTCACTACAACTTCAGAAGGATAAGACTAAATGG----G
1 ATCTGCTCT-ACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * *
26334878 ATCTGCTCT-CTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTTA
** * *
26334921 ATCCAC-CCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* * * * ** ** *
26334964 ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTCATCTTCA
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGA-TTACCGGCTTTA
* * * ***
26335009 GTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTAC-TTA
1 ATCTGCTCT-ACTGCAACTTCAGGA-GATAGGA-TTACCGGCTTTA
* * * * * * ***
26335053 GTCCGCTCCACTGCAACTTCAGGGAGATAAGACTA---GATGCG
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGATTACCGGCTTTA
* * * *
26335094 ATCTGCT-TTCTACAACTTCAGAGAGATAAGATCTA-AGG-TTTCA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGAT-TACCGGCTTT-A
* * * *
26335137 ATCCGC-CCACTGCAACTTCAGCGGGATAGGATTATCGGCTTTA
1 ATCTGCTCTACTGCAACTTCAG-GAGATAGGATTACCGGCTTTA
* *
26335180 ATCTGCTCTACTGCAACTTTAGGGAGATAAGATT
1 ATCTGCTCTACTGCAACTTCA-GGAGATAGGATT
26335214 TGTCATCTTC
Statistics
Matches: 503, Mismatches: 129, Indels: 99
0.69 0.18 0.14
Matches are distributed among these distances:
39 7 0.01
40 57 0.11
41 19 0.04
42 13 0.03
43 110 0.22
44 189 0.38
45 107 0.21
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
ATCTGCTCTACTGCAACTTCAGGAGATAGGATTACCGGCTTTA
Found at i:26334693 original size:89 final size:89
Alignment explanation
Indices: 26334577--26335084 Score: 409
Period size: 89 Copynumber: 5.8 Consensus size: 89
26334567 TCGGCTTTAA
** * *
26334577 TCTG-CTCTACTGCAACTTCAGCGGGATAGGA-TTACCGGCTTTAATCTGCTCTACTGCAACTTC
1 TCTGCCTC-ACTGCAACTTCAGAAGGATAAGACTTACCGGC-TTAATCTGCTCCACTGCAACTTC
*
26334640 AGGGAGATAAGATTTGCCATCTTCAG
64 AGGGAGATAAGATTTGACATCTTCAG
* ** * * *
26334666 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGG---GATCTGCT-CTCTGGAACTTCAG
1 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGCTTAATCTGCTCCACTGCAACTTCAG
* * * ** * *
26334727 AGAGATAAGATCTAAGGT-TTTAA
66 GGAGATAAGATTTGACATCTTCAG
* ** *
26334750 TCCGCC-CACTGCAACTTCAGTGGGATAGGA-TTACCGGCTTTAATCTGCTCCACTGCAACTTCA
1 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGC-TTAATCTGCTCCACTGCAACTTCA
*
26334813 GGGAGATAAGATTTGTCATCTTCAG
65 GGGAGATAAGATTTGACATCTTCAG
* * ** * *
26334838 TCTGCCTCACTACAACTTCAGAAGGATAAGACTAAATGG---GATCTGCT-CTCTGCAACTTCAG
1 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGCTTAATCTGCTCCACTGCAACTTCAG
* * * ** * *
26334899 AGAGATAAGATCTAAGGT-TTTAA
66 GGAGATAAGATTTGACATCTTCAG
** ** * * *
26334922 TCCACC-CACTGCAACTTCAGCGGGATAGGA-TTACCGGCTTTAATCTGCTCCACTGTAACTTTA
1 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGC-TTAATCTGCTCCACTGCAACTTCA
*
26334985 GGGAGATAAGATTTGTCATCTTCAG
65 GGGAGATAAGATTTGACATCTTCAG
* * *** * *
26335010 TCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAG
1 TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGCTTAATCTGCTCCACTGCAACTTCAG
26335075 GGAGATAAGA
66 GGAGATAAGA
26335085 CTAGATGCGA
Statistics
Matches: 313, Mismatches: 88, Indels: 36
0.72 0.20 0.08
Matches are distributed among these distances:
82 8 0.03
83 41 0.13
84 15 0.05
85 48 0.15
86 28 0.09
87 47 0.15
88 15 0.05
89 96 0.31
90 15 0.05
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (89 bp):
TCTGCCTCACTGCAACTTCAGAAGGATAAGACTTACCGGCTTAATCTGCTCCACTGCAACTTCAG
GGAGATAAGATTTGACATCTTCAG
Found at i:26334763 original size:172 final size:172
Alignment explanation
Indices: 26334585--26335042 Score: 835
Period size: 172 Copynumber: 2.7 Consensus size: 172
26334575 AATCTGCTCT
*
26334585 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
*
26334650 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
* *
26334715 CTGGAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCC
131 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
*
26334757 ACTGCAACTTCAGTGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
*
26334822 GATTTGTCATCTTCAGTCTGCCTCACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
26334887 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
131 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
* *
26334929 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGATAA
1 ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
*
26334994 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACT
66 GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACT
26335043 TGCTTACTTA
Statistics
Matches: 275, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 275 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (172 bp):
ACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
GATTTGTCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCT
CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACCC
Found at i:26334776 original size:83 final size:83
Alignment explanation
Indices: 26334673--26334941 Score: 288
Period size: 83 Copynumber: 3.2 Consensus size: 83
26334663 CAGTCTGCCT
*
26334673 CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGGAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
26334738 CTAAGGTTTTAATCCGCC
66 CTAAGGTTTTAATCCGCC
** * * ** * * *
26334756 CACTGCAACTTCAGTGGGATAGGA-TTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAGAAGGATAAGACTAAATGG----GATCTGCT-CTCTGCAACTTCAGAGAGAT
* **** * * *
26334820 AAGATTTGTCATCTTCAGTCTGCC
61 AAGATCTAAGGT-TTTAATCCGCC
*
26334844 TCACTACAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
1 -CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
*
26334909 TCTAAGGTTTTAATCCACC
65 TCTAAGGTTTTAATCCGCC
26334928 CACTGCAACTTCAG
1 CACTGCAACTTCAG
26334942 CGGGATAGGA
Statistics
Matches: 140, Mismatches: 38, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
82 4 0.03
83 34 0.24
84 7 0.05
85 25 0.18
86 14 0.10
87 24 0.17
88 8 0.06
89 20 0.14
90 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (83 bp):
CACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
CTAAGGTTTTAATCCGCC
Found at i:26334856 original size:217 final size:217
Alignment explanation
Indices: 26334459--26334858 Score: 567
Period size: 217 Copynumber: 1.8 Consensus size: 217
26334449 CCACTCCTGG
26334459 TGCAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
1 TGCAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
* *
26334524 AGGTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGCTCTACTG
66 AGGTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTG
* * * *
26334589 CAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
131 CAACTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATT
26334654 TGCCATCTTCAGTCTGCCTCAC
196 TGCCATCTTCAGTCTGCCTCAC
** * *
26334676 TGCAACTTCAGA-AGGATAAGACTAAATGGGATCTGCTCTCTGGAACTTCAGAGAGATAAGATCT
1 TGCAACTTCAGAGA-GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCC
* * *
26334740 AAGGTTTTAATCCGC-CCACTGCAACTTCAGTG-GGATAGGATTACCGGCTTTAATCTGCTCCAC
65 AAGGTTTTAATCCACTCCACTACAACTTCAG-GAAGATAGGATTACCGGCTTTAATCTGCTCCAC
** * *
26334803 TGCAACTTCAG-GGAGATAAGATTTGTCATCTTCAGTCTGC-CTCACTACAACTTCAG
129 TGCAACTTCAGCGG-GATAAGA-TTACCAGCTTCAATCTGCTCT-ACTACAACTTCAG
26334859 AAGGATAAGA
Statistics
Matches: 161, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
215 2 0.01
216 62 0.39
217 97 0.60
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (217 bp):
TGCAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
AGGTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTG
CAACTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATT
TGCCATCTTCAGTCTGCCTCAC
Found at i:26335099 original size:216 final size:216
Alignment explanation
Indices: 26334800--26335302 Score: 798
Period size: 216 Copynumber: 2.3 Consensus size: 216
26334790 TAATCTGCTC
* * * * *
26334800 CACTGCAACTTCAGG-GAGATAAGATTTG-TCATCTTCAGTCTGC-CTCACTACAACTTCA-GAA
1 CACTGCAACTTCAGGAG-GATAAGACTTGCTTA-CTT-AGTCCGCTC-CACTGCAACTTCAGGGA
* * *
26334861 GGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCA
62 -GATAAGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCA
*
26334926 CCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGTAACTTTAGGGAGA
126 CCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGA
26334991 TAAGATTTGTCATCTTCAGTCTGCCT
191 TAAGATTTGTCATCTTCAGTCTGCCT
26335017 CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATA
* * *
26335082 AGACTAGATGCGATCTGCTTTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCGCCCAC
66 AGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCACCCAC
* *
26335147 TGCAACTTCAGCGGGATAGGATTATCGGCTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGA
131 TGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
26335212 TTTGTCATCTTCAGTCTGCCT
196 TTTGTCATCTTCAGTCTGCCT
*
26335233 CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGTGAGATA
1 CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATA
26335298 AGACT
66 AGACT
26335303 CGATCTGTTA
Statistics
Matches: 267, Mismatches: 15, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
216 233 0.87
217 31 0.12
218 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (216 bp):
CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATA
AGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCACCCAC
TGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
TTTGTCATCTTCAGTCTGCCT
Found at i:26335178 original size:388 final size:388
Alignment explanation
Indices: 26334461--26335258 Score: 1155
Period size: 388 Copynumber: 2.1 Consensus size: 388
26334451 ACTCCTGGTG
26334461 CAACTTCAGAGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
1 CAACTTCAGAG-GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
* *
26334526 GTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGCTCTACTGCA
65 GTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTGCA
* * * *
26334591 ACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG
130 ACTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTG
* * **
26334656 CCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGGAA
195 CCATCTTCAGTCCGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGCGATCTGCTCTCTACAA
* *
26334721 CTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGTGGGATAGGATTACCG
260 CTTCAGAGAGATAAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCG
26334786 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTA
325 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTA
** *
26334850 CAACTTCAGAAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
1 CAACTTCAG-AGGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
* * *
26334915 GTTTTAATCCAC-CCACTGCAACTTCAGCG-GGATAGGATTACCGGCTTTAATCTGCTCCACTGT
65 GTTTTAATCCACTCCACTACAACTTCAG-GAAGATAGGATTACCGGCTTTAATCTGCTCCACTGC
* ** * *
26334978 AACTTTAG-GGAGATAAGATTTGTCATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAG
129 AACTTCAGCGG-GATAAGA-TTACCAGCTTCAATCTGCTCT-ACTGCAACTTCAGGGA-GATAAG
* * *
26335040 ACTTG-CTTACTT-AGTCCG-CTCCACTGCAACTTCAG-GGAGATAAGACTAGATGCGATCTGCT
190 ACTTGCCAT-CTTCAGTCCGCCT-CACTGCAACTTCAGAAG-GATAAGACTAAATGCGATCTGCT
*
26335101 TTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAG
252 CTCTACAACTTCAGAGAGATAAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAG
* * *
26335166 GATTATCGGCTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAGTCTGC
317 GATTACCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGC
*
26335231 CTCACTG
382 CTCACTA
26335238 CAACTTCAGGAGGATAAGACT
1 CAACTTCA-GAGGATAAGACT
26335259 TGCTTACTTA
Statistics
Matches: 368, Mismatches: 31, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
387 5 0.01
388 251 0.68
389 110 0.30
390 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (388 bp):
CAACTTCAGAGGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
TTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
CTTCAGCGGGATAAGATTACCAGCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGC
CATCTTCAGTCCGCCTCACTGCAACTTCAGAAGGATAAGACTAAATGCGATCTGCTCTCTACAAC
TTCAGAGAGATAAGATCTAAGGTTTCAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGG
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTA
Found at i:26335298 original size:44 final size:43
Alignment explanation
Indices: 26334965--26335302 Score: 196
Period size: 44 Copynumber: 7.8 Consensus size: 43
26334955 CCGGCTTTAA
* * * *
26334965 TCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTA-CTT-AG
26335010 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TTACTTAG
* * * * *
26335054 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGC-GA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTAG
** * * * * *
26335095 TCTGCT-TTCTACAACTTCAGAGAGATAAGATCTAAGGTT--TCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT--TGTTACTTAG
* * * ** *
26335138 TCCGC-CCACTGCAACTTCAGCGG-GATAGGA-TTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAG-GGAGATAAGACTTGT-TAC-TTAG
* * * *
26335181 TCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTA-CTT-AG
26335226 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TTACTTAG
* *
26335270 TCCGCTCCACTGCAACTTCAGTGAGATAAGACT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT
26335303 CGATCTGTTA
Statistics
Matches: 226, Mismatches: 41, Indels: 53
0.71 0.13 0.17
Matches are distributed among these distances:
39 1 0.00
40 20 0.09
41 8 0.04
42 2 0.01
43 34 0.15
44 87 0.38
45 70 0.31
46 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTAG
Found at i:26343355 original size:24 final size:24
Alignment explanation
Indices: 26343326--26343371 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26343316 ATCATCTTTT
* *
26343326 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATACATTTCCTTTTGAA
*
26343350 GCTGCTCCTACATTTCCTTTTG
1 GCTGCTCATACATTTCCTTTTG
26343372 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.46
Consensus pattern (24 bp):
GCTGCTCATACATTTCCTTTTGAA
Found at i:26348942 original size:15 final size:15
Alignment explanation
Indices: 26348920--26348956 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
26348910 TTGTTCTCTT
26348920 AAAAAAGAAAATTAA
1 AAAAAAGAAAATTAA
* *
26348935 ATAAAAGAAACTTAA
1 AAAAAAGAAAATTAA
26348950 AAAAAAG
1 AAAAAAG
26348957 GTGTCTGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.14
Consensus pattern (15 bp):
AAAAAAGAAAATTAA
Found at i:26349853 original size:16 final size:16
Alignment explanation
Indices: 26349832--26349862 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26349822 CGCTGTATTA
26349832 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
26349848 GAATAGAGGCGTAAT
1 GAATAGAGGCGTAAT
26349863 AGCAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.35, T:0.19
Consensus pattern (16 bp):
GAATAGAGGCGTAATG
Found at i:26350136 original size:17 final size:18
Alignment explanation
Indices: 26350095--26350129 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26350085 TTATTATTAA
*
26350095 ATATATTTTAATTAAAAT
1 ATATAATTTAATTAAAAT
26350113 ATATAATTTAA-TAAAAT
1 ATATAATTTAATTAAAAT
26350130 TATTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATTAAAAT
Found at i:26350188 original size:61 final size:58
Alignment explanation
Indices: 26350123--26350310 Score: 152
Period size: 61 Copynumber: 3.1 Consensus size: 58
26350113 ATATAATTTA
* *
26350123 ATAAAATTATTAATAATCAATATTGTTATATGGATTTACTCAGATCATAATATATGATACT
1 ATAAAATTATTAATAATCAATATTATTATATGAATTT-CT-A-ATCATAATATATGATACT
* * * * *
26350184 ATAAAATATAATTTAA-GAT-AATTATTATTAAAT-ATATTT-TAATTAAAATATATGAT-TT
1 ATAAAAT-T-A-TTAATAATCAA-TATTATTATATGA-ATTTCTAATCATAATATATGATACT
* *
26350242 AATAAAATTCTTAATAATCAATATTATTATATGAATTTCCTAAAATCATAATATATGATAGT
1 -ATAAAATTATTAATAATCAATATTATTATATGAATTT-CT--AATCATAATATATGATACT
26350304 ATAAAAT
1 ATAAAAT
26350311 ATAATTTTAA
Statistics
Matches: 100, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
56 4 0.04
57 16 0.16
58 5 0.05
59 21 0.21
60 1 0.01
61 29 0.29
62 4 0.04
63 16 0.16
64 4 0.04
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (58 bp):
ATAAAATTATTAATAATCAATATTATTATATGAATTTCTAATCATAATATATGATACT
Found at i:26350213 original size:120 final size:120
Alignment explanation
Indices: 26350073--26350370 Score: 490
Period size: 120 Copynumber: 2.5 Consensus size: 120
26350063 ATTTAATCCT
26350073 ATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTATTAATA
1 ATTTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTATTAATA
* * * *
26350138 ATCAATATTGTTATATGGATTTACTCAGATCATAATATATGATACTATAAAATATA
65 ATCAATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
* *
26350194 A-TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATA
1 ATTTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTATTAATA
* *
26350258 ATCAATATTATTATATGAATTTCCTAAAATCATAATATATGATAGTATAAAATATA
65 ATCAATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
*
26350314 ATTTTAAATAATTATTATTAAATATATTTTAATTAAAATATATTATTTAATAAAATT
1 ATTTTAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
26350371 TAAAATAATA
Statistics
Matches: 166, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 160 0.96
121 6 0.04
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (120 bp):
ATTTTAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTATTAATAA
TCAATATTATTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
Found at i:26350236 original size:18 final size:17
Alignment explanation
Indices: 26350213--26350249 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26350203 AATTATTATT
26350213 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
26350229 AAATATATGATTTAATA
1 AAATATATGATTTAATA
26350246 AAAT
1 AAAT
26350250 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:26350336 original size:14 final size:16
Alignment explanation
Indices: 26350317--26350360 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
26350307 AAATATAATT
26350317 TTAAATA-ATTATT-A
1 TTAAATATATTATTAA
26350331 TTAAATATATT-TTAA
1 TTAAATATATTATTAA
26350346 TTAAAATATATTATT
1 TT-AAATATATTATT
26350361 TAATAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.35
15 6 0.23
16 9 0.35
17 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAATATATTATTAA
Found at i:26350349 original size:29 final size:29
Alignment explanation
Indices: 26350317--26350405 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 29
26350307 AAATATAATT
*
26350317 TTAAATAATTATTATTAAATATATTTTAA
1 TTAAATAATTATTATTAAATATAATTTAA
* *
26350346 TT-AA-AATATATTATTTAATAAAATTTAA
1 TTAAATAAT-TATTATTAAATATAATTTAA
* * *
26350374 -AATAATAATAATTATTAAATTTAATTTAA
1 TTA-AATAATTATTATTAAATATAATTTAA
26350403 TTA
1 TTA
26350406 TATGAATTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
27 3 0.07
28 19 0.41
29 20 0.43
30 4 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATAATTATTATTAAATATAATTTAA
Found at i:26350356 original size:18 final size:17
Alignment explanation
Indices: 26350333--26350369 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26350323 AATTATTATT
26350333 AAATATA-T-TTTAATTA
1 AAATATATTATTTAA-TA
26350349 AAATATATTATTTAATA
1 AAATATATTATTTAATA
26350366 AAAT
1 AAAT
26350370 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 7 0.37
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATATATTATTTAATA
Found at i:26350357 original size:25 final size:26
Alignment explanation
Indices: 26350307--26350400 Score: 73
Period size: 29 Copynumber: 3.4 Consensus size: 26
26350297 TGATAGTATA
*
26350307 AAATATAATTTTAAATAATTATTATT
1 AAATATAATTTTAAATAAATATTATT
*
26350333 AAATAT-ATTTTAATTAAAATATATTATT
1 AAATATAATTTTAA--ATAA-ATATTATT
* * *
26350361 TAATAAAATTTAAAATAATAATAATTATT
1 AAATATAATTTTAAAT-A-AAT-ATTATT
*
26350390 AAATTTAATTT
1 AAATATAATTT
26350401 AATTATATGA
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
25 7 0.13
26 6 0.12
27 4 0.08
28 14 0.27
29 21 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
AAATATAATTTTAAATAAATATTATT
Found at i:26350520 original size:81 final size:80
Alignment explanation
Indices: 26350419--26350674 Score: 343
Period size: 81 Copynumber: 3.1 Consensus size: 80
26350409 GAATTTTTAT
* * *
26350419 AATTTA-ATATATTATTATTAAATATAATTTAATAATAATATATAACTTCATCAAATTCTTGATA
1 AATTTATATA-ATTAATATTAAATATAATTTAATAATGATATATAA-TTCATAAAATTCTTGATA
*
26350483 ATAAATTTTGTTATATG
64 ATAAATTTTCTTATATG
26350500 AATTTATATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAA
1 AATTTATATAATTAATATTAAATATAATTTAATAATGATATATAA-TTCATAAAATTCTTGATAA
26350565 TAAATTTTCTTATATG
65 TAAATTTTCTTATATG
*
26350581 AATTTATATAATTTAAAATAATTAATATTATATAATTGAATAATGATATATAATTCATAAAATTC
1 AATTTATATAA-TT--AAT-ATT-A-A--ATATAATTTAATAATGATATATAATTCATAAAATTC
* *
26350646 TTAATAATAAATATTCTTATATG
58 TTGATAATAAATTTTCTTATATG
26350669 AATTTA
1 AATTTA
26350675 CTAAAATCAT
Statistics
Matches: 158, Mismatches: 8, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
81 83 0.53
82 5 0.03
84 3 0.02
85 3 0.02
86 1 0.01
87 1 0.01
88 39 0.25
89 23 0.15
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (80 bp):
AATTTATATAATTAATATTAAATATAATTTAATAATGATATATAATTCATAAAATTCTTGATAAT
AAATTTTCTTATATG
Found at i:26350542 original size:18 final size:18
Alignment explanation
Indices: 26350504--26350552 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
26350494 TATATGAATT
*
26350504 TATATAA-TTAAT-ATTA
1 TATATAATTTAATAATGA
*
26350520 AATATAATTTAATAATGA
1 TATATAATTTAATAATGA
*
26350538 TATATAATTTCATAA
1 TATATAATTTAATAA
26350553 AATTCTTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 6 0.22
17 5 0.19
18 16 0.59
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TATATAATTTAATAATGA
Found at i:26350650 original size:44 final size:44
Alignment explanation
Indices: 26350511--26350651 Score: 126
Period size: 44 Copynumber: 3.1 Consensus size: 44
26350501 ATTTATATAA
26350511 TTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTC
1 TTAATATT--ATATAATTTAATAATGATATATAA-TTCATAAAATTC
* * * ** * **
26350558 TTGATAATAAATTTTCTTATATGAAT-TTATATAATT--TAAAATAA
1 TTAATATTATATAAT-TTA-AT-AATGATATATAATTCATAAAATTC
*
26350602 TTAATATTATATAATTGAATAATGATATATAATTCATAAAATTC
1 TTAATATTATATAATTTAATAATGATATATAATTCATAAAATTC
26350646 TTAATA
1 TTAATA
26350652 ATAAATATTC
Statistics
Matches: 71, Mismatches: 17, Indels: 15
0.69 0.17 0.15
Matches are distributed among these distances:
41 3 0.04
42 11 0.15
43 2 0.03
44 28 0.39
45 4 0.06
46 5 0.07
47 15 0.21
48 3 0.04
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (44 bp):
TTAATATTATATAATTTAATAATGATATATAATTCATAAAATTC
Found at i:26350663 original size:88 final size:90
Alignment explanation
Indices: 26350493--26350674 Score: 289
Period size: 88 Copynumber: 2.0 Consensus size: 90
26350483 ATAAATTTTG
* *
26350493 TTATATGAATTTATATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTC
1 TTATATGAATTTAAATAATTAATATT-AATATAATTGAATAATGATATATAATTTCATAAAATTC
* *
26350558 TTGATAATAAATTTTCTTATATGAAT
65 TTAATAATAAATATTCTTATATGAAT
26350584 TTATAT-AATTTAAAATAATTAATATT-ATATAATTGAATAATGATATATAA-TTCATAAAATTC
1 TTATATGAATTT-AAATAATTAATATTAATATAATTGAATAATGATATATAATTTCATAAAATTC
26350646 TTAATAATAAATATTCTTATATGAAT
65 TTAATAATAAATATTCTTATATGAAT
26350672 TTA
1 TTA
26350675 CTAAAATCAT
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
88 39 0.45
89 23 0.27
90 5 0.06
91 19 0.22
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (90 bp):
TTATATGAATTTAAATAATTAATATTAATATAATTGAATAATGATATATAATTTCATAAAATTCT
TAATAATAAATATTCTTATATGAAT
Found at i:26359846 original size:24 final size:24
Alignment explanation
Indices: 26359790--26359839 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
26359780 GCTTCCTAAG
*
26359790 TAAGTGCTCTTCGGAGCTACTCGT
1 TAAGTGCTCTTCGGAGCTACCCGT
*
26359814 TAAGTGCTCTTTGGAGCTACCCGT
1 TAAGTGCTCTTCGGAGCTACCCGT
26359838 TA
1 TA
26359840 TATGCTCGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (24 bp):
TAAGTGCTCTTCGGAGCTACCCGT
Found at i:26362432 original size:31 final size:31
Alignment explanation
Indices: 26362396--26362461 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
26362386 TTACAATTCG
*
26362396 GTCACTAAACTATTTGAAA-GTTTTCATTTAA
1 GTCACTAAACTA-TTCAAATGTTTTCATTTAA
* *
26362427 GTCACTGAACTATTCAAATGTTTTTATTTAA
1 GTCACTAAACTATTCAAATGTTTTCATTTAA
26362458 GTCA
1 GTCA
26362462 TTGGACTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (31 bp):
GTCACTAAACTATTCAAATGTTTTCATTTAA
Found at i:26381179 original size:25 final size:25
Alignment explanation
Indices: 26381146--26381204 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
26381136 GAGCTGTAAA
*
26381146 CGGTAAGCTCATACGAGCTAAATAT
1 CGGTAAGCTCATACGAGATAAATAT
* *
26381171 CGGTAAGCTCATGCGAGATGAATAT
1 CGGTAAGCTCATACGAGATAAATAT
*
26381196 CAGTAAGCT
1 CGGTAAGCT
26381205 ATTTCAAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.24
Consensus pattern (25 bp):
CGGTAAGCTCATACGAGATAAATAT
Found at i:26382083 original size:21 final size:21
Alignment explanation
Indices: 26382059--26382104 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
26382049 AAGAAATAAA
26382059 TTAAAGTGTTTTAATTTCACT
1 TTAAAGTGTTTTAATTTCACT
**
26382080 TTAATTTGTTTTAATTTCACT
1 TTAAAGTGTTTTAATTTCACT
26382101 TTAA
1 TTAA
26382105 TTACAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.57
Consensus pattern (21 bp):
TTAAAGTGTTTTAATTTCACT
Found at i:26382084 original size:11 final size:11
Alignment explanation
Indices: 26382068--26382106 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
26382058 ATTAAAGTGT
26382068 TTTAATTTCAC
1 TTTAATTTCAC
**
26382079 TTTAATTT-GT
1 TTTAATTTCAC
26382089 TTTAATTTCAC
1 TTTAATTTCAC
26382100 TTTAATT
1 TTTAATT
26382107 ACAAAATTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.26, C:0.10, G:0.03, T:0.62
Consensus pattern (11 bp):
TTTAATTTCAC
Found at i:26382105 original size:21 final size:21
Alignment explanation
Indices: 26382065--26382106 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
26382055 TAAATTAAAG
26382065 TGTTTTAATTTCACTTTAATT
1 TGTTTTAATTTCACTTTAATT
26382086 TGTTTTAATTTCACTTTAATT
1 TGTTTTAATTTCACTTTAATT
26382107 ACAAAATTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTTAATTTCACTTTAATT
Found at i:26384385 original size:129 final size:129
Alignment explanation
Indices: 26384132--26384567 Score: 480
Period size: 129 Copynumber: 3.4 Consensus size: 129
26384122 TAAGGCTTAC
* * * * * * ***
26384132 TGATTTACGATCATGAATAACCTTTTCTAAGTTAGATGATTTATGATTGTAACTCCAAACAGCTC
1 TGATTTACAATTATAAATAATC-TTTCTAAGTTAGCTGATTTACGATCACAACTCCAAACAGCTC
*
26384197 ATTAATTTACGATCACAACTGATATTATTAAGACTCGCTGATTTACGATCACAACCTAAGTTCAT
65 ATTGATTTACGATCACAACTGATATTATTAAGACTCGCTGATTTACGATCACAACCTAAGTTCAT
* * * *
26384262 TTATTTACAATTATAAATAATCTTTCTGAGTTAGCTAATTTATGATCACAACTCCAAACAGCTCA
1 TGATTTACAATTATAAATAATCTTTCTAAGTTAGCTGATTTACGATCACAACTCCAAACAGCTCA
* * * * * * * * *
26384327 TTGATTTACAATCATAGCTAATATTATTAAGTCTCACTGATTTACAATCACATCCTAAGTTAAT
66 TTGATTTACGATCACAACTGATATTATTAAGACTCGCTGATTTACGATCACAACCTAAGTTCAT
** * * * * * * ** *
26384391 TGATTTATGATCATGAATAATATTTCTGAGTTAGCTGGTTTACAAT-AGCAACTTTAAATAGCTC
1 TGATTTACAATTATAAATAATCTTTCTAAGTTAGCTGATTTACGATCA-CAACTCCAAACAGCTC
* * * *
26384455 GTTGATTTATGATCACAATTGATATTATTAAGACTCGTTGATTTACGATCACAACCTAAGTTCAT
65 ATTGATTTACGATCACAACTGATATTATTAAGACTCGCTGATTTACGATCACAACCTAAGTTCAT
*
26384520 TGATTTGCAATTATGAAA-AATCTTTCTAAGTTAGCTGATTTACGATCA
1 TGATTTACAATTAT-AAATAATCTTTCTAAGTTAGCTGATTTACGATCA
26384568 TGAACAATCT
Statistics
Matches: 247, Mismatches: 56, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
128 1 0.00
129 226 0.91
130 20 0.08
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (129 bp):
TGATTTACAATTATAAATAATCTTTCTAAGTTAGCTGATTTACGATCACAACTCCAAACAGCTCA
TTGATTTACGATCACAACTGATATTATTAAGACTCGCTGATTTACGATCACAACCTAAGTTCAT
Found at i:26384559 original size:35 final size:36
Alignment explanation
Indices: 26384520--26384597 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 36
26384510 CTAAGTTCAT
* * *
26384520 TGATTTGCAATTATGAAAAATCTT-TCTAAGTTAGC
1 TGATTTACAATCATGAAAAATCTTCCCTAAGTTAGC
* * *
26384555 TGATTTACGATCATGAACAATCTTCCCTGAGTTAGC
1 TGATTTACAATCATGAAAAATCTTCCCTAAGTTAGC
*
26384591 TTATTTA
1 TGATTTA
26384598 TGATCGCAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
35 20 0.57
36 15 0.43
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (36 bp):
TGATTTACAATCATGAAAAATCTTCCCTAAGTTAGC
Found at i:26395597 original size:16 final size:16
Alignment explanation
Indices: 26395552--26395658 Score: 69
Period size: 15 Copynumber: 6.6 Consensus size: 16
26395542 TGTATATTTC
26395552 ATTTTTTATTTTTAATA
1 ATTTTTTATTTTTAA-A
** *
26395569 ATTATAGTATTTTTAAG
1 ATT-TTTTATTTTTAAA
26395586 ATTTTTTA-TTTTAAA
1 ATTTTTTATTTTTAAA
** *
26395601 GATTTTTTA-AATT-AT
1 -ATTTTTTATTTTTAAA
*
26395616 ATATTTTTATTTAT-AA
1 AT-TTTTTATTTTTAAA
*
26395632 TTTTTTTATTTTTAAA
1 ATTTTTTATTTTTAAA
26395648 ATATTTTTATT
1 AT-TTTTTATT
26395659 GATTTTTAAT
Statistics
Matches: 68, Mismatches: 16, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
14 2 0.03
15 23 0.34
16 19 0.28
17 14 0.21
18 10 0.15
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTTTTTATTTTTAAA
Found at i:26395599 original size:15 final size:15
Alignment explanation
Indices: 26395579--26395658 Score: 56
Period size: 16 Copynumber: 5.1 Consensus size: 15
26395569 ATTATAGTAT
26395579 TTTTAAGATTTTTTA
1 TTTTAAGATTTTTTA
26395594 TTTTAAAGATTTTTTA
1 TTTT-AAGATTTTTTA
** *
26395610 AATT-ATATATTTTTA
1 TTTTAAGAT-TTTTTA
*
26395625 TTTATAA-TTTTTTTA
1 TTT-TAAGATTTTTTA
*
26395640 TTTTTAAAATATTTTTA
1 -TTTTAAGAT-TTTTTA
26395657 TT
1 TT
26395659 GATTTTTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
14 3 0.06
15 20 0.39
16 21 0.41
17 7 0.14
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TTTTAAGATTTTTTA
Found at i:26395663 original size:21 final size:19
Alignment explanation
Indices: 26395631--26395675 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
26395621 TTTATTTATA
26395631 ATTTTTTTATTTTTAAAAT
1 ATTTTTTTATTTTTAAAAT
26395650 ATTTTTATTGATTTTT--AAT
1 ATTTTT-TT-ATTTTTAAAAT
26395669 ATTTTTT
1 ATTTTTT
26395676 GGATTATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 15 0.62
20 2 0.08
21 6 0.25
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
ATTTTTTTATTTTTAAAAT
Found at i:26395774 original size:16 final size:16
Alignment explanation
Indices: 26395753--26395783 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26395743 AAAAAAGTTG
*
26395753 TATATATTTTTATATT
1 TATATATTATTATATT
26395769 TATATATTATTATAT
1 TATATATTATTATAT
26395784 ATATTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATATATTATTATATT
Found at i:26411135 original size:19 final size:20
Alignment explanation
Indices: 26411103--26411140 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
26411093 AACCATAAAC
*
26411103 CCTTAGACCAAAACTTTAAT
1 CCTTAGACCAAAACCTTAAT
*
26411123 CCTT-GACCCAAACCTTAA
1 CCTTAGACCAAAACCTTAA
26411141 ATTGAAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.37, C:0.32, G:0.05, T:0.26
Consensus pattern (20 bp):
CCTTAGACCAAAACCTTAAT
Found at i:26430085 original size:118 final size:118
Alignment explanation
Indices: 26429877--26430224 Score: 584
Period size: 118 Copynumber: 3.0 Consensus size: 118
26429867 TGAGGGAGGG
26429877 AGCTTGATCTATGTTCTTGACTATATTATCACTCGTAAATTGCACCTTCCGTTAATTAGTACTTT
1 AGCTTGATCTATGTTCTTGACTATATTATCACTCGTAAATTGCACCTTCCGTTAATTAGTACTTT
*
26429942 AACTGCCATCAAGCTACAGCTAAGATTCTACGGATACATAGCATACCATTTAA
66 AACTACCATCAAGCTACAGCTAAGATTCTACGGATACATAGCATACCATTTAA
* *
26429995 AGCTTGATCTATGTTCTTGACTATGTTATCACCCGTAAATTGCACCTTCCGTTAATTAGTACTTT
1 AGCTTGATCTATGTTCTTGACTATATTATCACTCGTAAATTGCACCTTCCGTTAATTAGTACTTT
*
26430060 AACTACCATCAAGCTACAGCTAAGATTCTAC-GATACATAGCATACCATCTAA
66 AACTACCATCAAGCTACAGCTAAGATTCTACGGATACATAGCATACCATTTAA
*
26430112 AGCTTGATCTATGTTCTTGACTATATTCAGCACTCGTAAATTG------CCGTTAATTAGTACTT
1 AGCTTGATCTATGTTCTTGACTATATT-ATCACTCGTAAATTGCACCTTCCGTTAATTAGTACTT
*
26430171 TAACTACCATCAAGCTACAGCTAAGATTCTACGGATACAGAGCATACCATTTAA
65 TAACTACCATCAAGCTACAGCTAAGATTCTACGGATACATAGCATACCATTTAA
26430225 CTGATGGCAG
Statistics
Matches: 219, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
112 48 0.22
113 19 0.09
117 46 0.21
118 106 0.48
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (118 bp):
AGCTTGATCTATGTTCTTGACTATATTATCACTCGTAAATTGCACCTTCCGTTAATTAGTACTTT
AACTACCATCAAGCTACAGCTAAGATTCTACGGATACATAGCATACCATTTAA
Found at i:26437709 original size:22 final size:21
Alignment explanation
Indices: 26437666--26437712 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 21
26437656 TTTTTAATAC
26437666 AAAATAATTCTAATTCATAATT
1 AAAATAATTCTAATTCA-AATT
26437688 AAAATAATTCTCAAATTC-AATT
1 AAAATAATTCT--AATTCAAATT
26437710 AAA
1 AAA
26437713 TGTCTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 18 0.78
24 5 0.22
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATAATTCTAATTCAAATT
Found at i:26439662 original size:23 final size:23
Alignment explanation
Indices: 26439629--26439672 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26439619 GCCACAAAAA
*
26439629 AGTAAAAGCTCACCAAGTATTCC
1 AGTAAAAGCTCACAAAGTATTCC
* *
26439652 AGTAAATGCTCTCAAAGTATT
1 AGTAAAAGCTCACAAAGTATT
26439673 TTATAACTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (23 bp):
AGTAAAAGCTCACAAAGTATTCC
Found at i:26439844 original size:17 final size:18
Alignment explanation
Indices: 26439813--26439850 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26439803 CTTTGGGAAT
26439813 TTACACAATCCTCTAAGA
1 TTACACAATCCTCTAAGA
* *
26439831 TTACA-AATCTTCTAATA
1 TTACACAATCCTCTAAGA
26439848 TTA
1 TTA
26439851 GTTTCCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (18 bp):
TTACACAATCCTCTAAGA
Found at i:26441603 original size:26 final size:26
Alignment explanation
Indices: 26441574--26441649 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
26441564 GAGCAATAAC
26441574 AGGAAGCTCACAAAGAGCCTATAATT
1 AGGAAGCTCACAAAGAGCCTATAATT
*
26441600 AGGAATCTCACAAAGAGCCTATAATT
1 AGGAAGCTCACAAAGAGCCTATAATT
26441626 AGGAAGCTCACAAAGAGCCATATA
1 AGGAAGCTCACAAAGAGCC-TATA
26441650 CGGGACGCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
26 43 0.91
27 4 0.09
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (26 bp):
AGGAAGCTCACAAAGAGCCTATAATT
Found at i:26446858 original size:17 final size:18
Alignment explanation
Indices: 26446814--26446858 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 18
26446804 ATAAAAATTA
26446814 AATAAATTATA-TTCATT
1 AATAAATTATATTTCATT
*
26446831 AA-AAA-TATATTTTA-T
1 AATAAATTATATTTCATT
26446846 AATAAATTATATT
1 AATAAATTATATT
26446859 AATATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
15 7 0.29
16 9 0.38
17 8 0.33
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATAAATTATATTTCATT
Found at i:26454286 original size:16 final size:16
Alignment explanation
Indices: 26454267--26454307 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
26454257 TAATTTGATA
26454267 TAATTTTAATAACAAC
1 TAATTTTAATAACAAC
*
26454283 TAATTTTAATAACAAT
1 TAATTTTAATAACAAC
*
26454299 TAGTTTTAA
1 TAATTTTAA
26454308 GAAAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (16 bp):
TAATTTTAATAACAAC
Found at i:26455557 original size:42 final size:42
Alignment explanation
Indices: 26455498--26455589 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
26455488 AATTATATTT
26455498 ATATATATGCAAATGATTAAATTATGAAATGAGAAATTGTGA
1 ATATATATGCAAATGATTAAATTATGAAATGAGAAATTGTGA
*
26455540 ATATATATGCAAATGATTAAATTATTAAATGAGAAATTGTGA
1 ATATATATGCAAATGATTAAATTATGAAATGAGAAATTGTGA
26455582 ATTATATA
1 A-TATATA
26455590 CATGAAATGT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 42 0.88
43 6 0.12
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (42 bp):
ATATATATGCAAATGATTAAATTATGAAATGAGAAATTGTGA
Found at i:26455613 original size:42 final size:41
Alignment explanation
Indices: 26455498--26455613 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 41
26455488 AATTATATTT
*
26455498 ATATATATGCAAATGATTAAATTATGAAATGAGAAATTGTGA
1 ATATATATGCAAATGATGAAATTATG-AATGAGAAATTGTGA
* *
26455540 ATATATATGCAAATGATTAAATTATTAAATGAGAAATTGTGA
1 ATATATATGCAAATGATGAAATTA-TGAATGAGAAATTGTGA
*
26455582 ATTATATACATG-AAATG-TGATATTATGAATGA
1 A-TATAT--ATGCAAATGATGAAATTATGAATGA
26455614 ATCAATAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
42 46 0.70
43 12 0.18
44 5 0.08
45 3 0.05
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.35
Consensus pattern (41 bp):
ATATATATGCAAATGATGAAATTATGAATGAGAAATTGTGA
Found at i:26469853 original size:28 final size:28
Alignment explanation
Indices: 26469820--26469900 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
26469810 CAGTAACAAT
* *
26469820 ACAGTGTAAGCCCTGGCCTAATACAGTA
1 ACAGTGTAAGCCCTAGCCCAATACAGTA
** *
26469848 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTAAGCCCTAGCCCAATACAGTA
** * *
26469876 ACAGTGTGGGCCTTAGCCCATTACA
1 ACAGTGTAAGCCCTAGCCCAATACA
26469901 ATATCAGTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (28 bp):
ACAGTGTAAGCCCTAGCCCAATACAGTA
Found at i:26469908 original size:28 final size:28
Alignment explanation
Indices: 26469839--26469908 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
26469829 GCCCTGGCCT
*
26469839 AATACAGTAACAGTGTGGGCCTTAGCCC
1 AATACAATAACAGTGTGGGCCTTAGCCC
*
26469867 AATACAGTAACAGTGTGGGCCTTAGCCC
1 AATACAATAACAGTGTGGGCCTTAGCCC
* *
26469895 ATTACAATATCAGT
1 AATACAATAACAGT
26469909 ACAGTGCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (28 bp):
AATACAATAACAGTGTGGGCCTTAGCCC
Found at i:26469909 original size:34 final size:28
Alignment explanation
Indices: 26469839--26469900 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
26469829 GCCCTGGCCT
26469839 AATACAGTAACAGTGTGGGCCTTAGCCC
1 AATACAGTAACAGTGTGGGCCTTAGCCC
26469867 AATACAGTAACAGTGTGGGCCTTAGCCC
1 AATACAGTAACAGTGTGGGCCTTAGCCC
*
26469895 ATTACA
1 AATACA
26469901 ATATCAGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (28 bp):
AATACAGTAACAGTGTGGGCCTTAGCCC
Found at i:26470322 original size:27 final size:26
Alignment explanation
Indices: 26470290--26470490 Score: 197
Period size: 27 Copynumber: 7.5 Consensus size: 26
26470280 TCATCTCTTA
** *
26470290 GGGGTATAACAGTCATTTTACCATAT
1 GGGGTATTTCAGTCATTTTACCCTAT
26470316 GGAGGTATTTC-GATCATTTTACCCTAT
1 GG-GGTATTTCAG-TCATTTTACCCTAT
26470343 AGGGGTATTTCAGTCATTTTACCCTAT
1 -GGGGTATTTCAGTCATTTTACCCTAT
* *
26470370 GGGGGTATTTTAGCCATTTTACCCTAT
1 -GGGGTATTTCAGTCATTTTACCCTAT
** * *
26470397 AAAGGTATTTCGGTCATTTTACTCTAT
1 -GGGGTATTTCAGTCATTTTACCCTAT
* *
26470424 GAGGGTATTTCAGTTATTTTATCCTAT
1 G-GGGTATTTCAGTCATTTTACCCTAT
* * *
26470451 GGGGGTATTTCGGTTATTTTATCCTATT
1 -GGGGTATTTCAGTCATTTTACCCTA-T
26470479 GGGGTATTTCAG
1 GGGGTATTTCAG
26470491 GGCTCGATCC
Statistics
Matches: 147, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.02
27 139 0.95
28 5 0.03
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGGTATTTCAGTCATTTTACCCTAT
Found at i:26470407 original size:81 final size:81
Alignment explanation
Indices: 26470303--26470460 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
26470293 GTATAACAGT
**
26470303 CATTTTACCATATGGAGGTATTTCGATCATTTTACCCTAT-AGGGGTATTTCAGTCATTTTACCC
1 CATTTTACCATATAAAGGTATTTCGATCATTTTACCCTATGA-GGGTATTTCAGTCATTTTACCC
26470367 TATGGGGGTATTTTAGC
65 TATGGGGGTATTTTAGC
* * * * *
26470384 CATTTTACCCTATAAAGGTATTTCGGTCATTTTACTCTATGAGGGTATTTCAGTTATTTTATCCT
1 CATTTTACCATATAAAGGTATTTCGATCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCT
26470449 ATGGGGGTATTT
66 ATGGGGGTATTT
26470461 CGGTTATTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 68 0.99
82 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (81 bp):
CATTTTACCATATAAAGGTATTTCGATCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCT
ATGGGGGTATTTTAGC
Found at i:26479295 original size:212 final size:214
Alignment explanation
Indices: 26478926--26479354 Score: 835
Period size: 212 Copynumber: 2.0 Consensus size: 214
26478916 TTCTTATGAA
26478926 AAACCTTCAAAAATCATGGCCTTTTATAGGCATAGAGAATATTGGAATTTTGAAAAAAAAATAAT
1 AAACCTTCAAAAATCATGGCCTTTTATAGGCATAGAGAATATTGGAATTTTGAAAAAAAAATAAT
26478991 CCACAAAATCTGCCATTAAATCAATTTGATTTTATTGGAATCAAATCAATAAGATAAATATCTTT
66 CCACAAAATCTGCCATTAAATCAATTTGATTTTATTGGAATCAAATCAATAAGATAAATATCTTT
26479056 ATATAAGTACATTATGTCTACTAAGGAAAATAAATTTGTGTTGGGCTAAAATATTTGCAAACCCA
131 ATATAAGTACATTATGTCTACTAAGGAAAATAAATTTGTGTTGGGCTAAAATATTTGCAAACCCA
26479121 TTTGGGCCTGACCGATTCC
196 TTTGGGCCTGACCGATTCC
*
26479140 AAACCTTCAGAAATCATGGCCTTTTATAGGCATAGAGAATATTGGAATTTTG-AAAAAAAA-AAT
1 AAACCTTCAAAAATCATGGCCTTTTATAGGCATAGAGAATATTGGAATTTTGAAAAAAAAATAAT
26479203 CCACAAAATCTGCCATTAAATCAATTTGATTTTATTGGAATCAAATCAATAAGATAAATATCTTT
66 CCACAAAATCTGCCATTAAATCAATTTGATTTTATTGGAATCAAATCAATAAGATAAATATCTTT
26479268 ATATAAGTACATTATGTCTACTAAGGAAAATAAATTTGTGTTGGGCTAAAATATTTGCAAACCCA
131 ATATAAGTACATTATGTCTACTAAGGAAAATAAATTTGTGTTGGGCTAAAATATTTGCAAACCCA
26479333 TTTGGGCCTGACCGATTCC
196 TTTGGGCCTGACCGATTCC
26479352 AAA
1 AAA
26479355 TATTTCTCAT
Statistics
Matches: 214, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
212 155 0.72
213 8 0.04
214 51 0.24
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (214 bp):
AAACCTTCAAAAATCATGGCCTTTTATAGGCATAGAGAATATTGGAATTTTGAAAAAAAAATAAT
CCACAAAATCTGCCATTAAATCAATTTGATTTTATTGGAATCAAATCAATAAGATAAATATCTTT
ATATAAGTACATTATGTCTACTAAGGAAAATAAATTTGTGTTGGGCTAAAATATTTGCAAACCCA
TTTGGGCCTGACCGATTCC
Found at i:26480087 original size:3 final size:3
Alignment explanation
Indices: 26480079--26480119 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26480069 AATATTTGCT
26480079 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26480120 GCAATTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26481023 original size:24 final size:24
Alignment explanation
Indices: 26480996--26481048 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
26480986 CTGAGACTGT
26480996 GTCTCAGTAGTAGGAGTACCAACG
1 GTCTCAGTAGTAGGAGTACCAACG
26481020 GTCTCAGTAGTAGGAGTACCAACG
1 GTCTCAGTAGTAGGAGTACCAACG
26481044 GTCTC
1 GTCTC
26481049 GCTGGTCTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (24 bp):
GTCTCAGTAGTAGGAGTACCAACG
Found at i:26489594 original size:20 final size:21
Alignment explanation
Indices: 26489571--26489612 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
26489561 ATATGAACTC
26489571 TAAATT-T-GTTATATAATATG
1 TAAATTCTAGTTAT-TAATATG
26489591 TAAATTCTAGTTATTAATATG
1 TAAATTCTAGTTATTAATATG
26489612 T
1 T
26489613 TGATTGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 9 0.45
22 5 0.25
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (21 bp):
TAAATTCTAGTTATTAATATG
Found at i:26489808 original size:21 final size:21
Alignment explanation
Indices: 26489769--26489809 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26489759 ATAAATTTGC
* *
26489769 TGTGAAAAATGTTGGATATTT
1 TGTGAAAAATGATGAATATTT
*
26489790 TGTGAAATATGATGAATATT
1 TGTGAAAAATGATGAATATT
26489810 CATGTTGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (21 bp):
TGTGAAAAATGATGAATATTT
Found at i:26489908 original size:19 final size:19
Alignment explanation
Indices: 26489884--26489920 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26489874 TTTATTAGTA
*
26489884 TAATTTGATTGTTTACTTG
1 TAATTTGATTATTTACTTG
*
26489903 TAATTTGTTTATTTACTT
1 TAATTTGATTATTTACTT
26489921 AATTGTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (19 bp):
TAATTTGATTATTTACTTG
Found at i:26490033 original size:115 final size:112
Alignment explanation
Indices: 26489831--26490069 Score: 347
Period size: 115 Copynumber: 2.1 Consensus size: 112
26489821 TGGGTATATT
* * *
26489831 TTAAT-ATATATTTGTAATTATTATAATAAATTAGATTAATATTTTTATTAGTATAATTTGATTG
1 TTAATAATATATTCGTAATTATTATAATAAATTAGATTAATAATTTTATTAGTAAAATTTGATTG
*
26489895 TTTACTTGTAATTTGTTTATTTACTTAATTGTAAATTATTTATTCTA
66 TTTACTTGTAATTTGTTTATTTACTTAAATGTAAATTATTTATTCTA
* *
26489942 TTAGTAATATATTCGTAATTATTATAATAAATTAGATATTGATAATTTTATTAGTAAAAATTAT-
1 TTAATAATATATTCGTAATTATTATAATAAATTAG--ATTAATAATTTTATTAGT-AAAATT-TG
* * *
26490006 ATTGTTTACTTGTAATTTGTTTGTTTACTTAAATGTAAATTTTTTATTTTA
62 ATTGTTTACTTGTAATTTGTTTATTTACTTAAATGTAAATTATTTATTCTA
26490057 TTAATAATATATT
1 TTAATAATATATT
26490070 TAATTTAAAT
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
111 4 0.04
112 28 0.25
114 16 0.14
115 64 0.57
116 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (112 bp):
TTAATAATATATTCGTAATTATTATAATAAATTAGATTAATAATTTTATTAGTAAAATTTGATTG
TTTACTTGTAATTTGTTTATTTACTTAAATGTAAATTATTTATTCTA
Found at i:26492902 original size:65 final size:64
Alignment explanation
Indices: 26492796--26492923 Score: 193
Period size: 65 Copynumber: 2.0 Consensus size: 64
26492786 TCCCAAGCCA
* * *
26492796 TCTCTAGTCTTGTGTTTAGCTCCATTCTCTCAAATGATATTATTCCCCCACAATATGATGTAGG
1 TCTCTAGTCTTGTGTTTAACTCCATTATCTCAAATGATATTATACCCCCACAATATGATGTAGG
* * *
26492860 TCTCTAGTGCTTGTGTTTAACTCCATTATCTCAAATGTTATTATACCCCCGCGATATGATGTAG
1 TCTCTAGT-CTTGTGTTTAACTCCATTATCTCAAATGATATTATACCCCCACAATATGATGTAG
26492924 ATAAACCTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
64 8 0.14
65 49 0.86
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (64 bp):
TCTCTAGTCTTGTGTTTAACTCCATTATCTCAAATGATATTATACCCCCACAATATGATGTAGG
Done.