Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 84 of 226
Found at i:26494209 original size:26 final size:25
Alignment explanation
Indices: 26494171--26494390 Score: 181
Period size: 26 Copynumber: 8.5 Consensus size: 25
26494161 GAGATGTACT
26494171 TTATTTAGCAGGCCTTGAGTCAGTGA
1 TTATTTAGCAGGCCTTGAG-CAGTGA
* * *
26494197 TTATTTAGTAGGCCTTGAGCCGTCGT
1 TTATTTAGCAGGCCTTGAGCAGT-GA
* *
26494223 TTATTTAGCAGGTCTTGAGCCGGTGA
1 TTATTTAGCAGGCCTTGAG-CAGTGA
** **
26494249 TTATTTAGCAGGCCTTGAGTTGATTT
1 TTATTTAGCAGGCCTTGAGCAG-TGA
* **
26494275 TTATTTAGCAGGCCTTGAGTCGGTTT
1 TTATTTAGCAGGCCTTGAG-CAGTGA
* *
26494301 TTATTTACCAGGCCTTGAGCTAGTGT
1 TTATTTAGCAGGCCTTGAGC-AGTGA
* *
26494327 TTATTTAGCA-GCCTTTGAACCGGTGA
1 TTATTTAGCAGGCC-TTG-AGCAGTGA
* *
26494353 TTATTTAGTAGGCTTTGAGCTAGTGA
1 TTATTTAGCAGGCCTTGAGC-AGTGA
*
26494379 TTAGTTAGCAGG
1 TTATTTAGCAGG
26494391 TACTATGTAC
Statistics
Matches: 158, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
25 10 0.06
26 140 0.89
27 8 0.05
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (25 bp):
TTATTTAGCAGGCCTTGAGCAGTGA
Found at i:26494249 original size:52 final size:51
Alignment explanation
Indices: 26494170--26494390 Score: 237
Period size: 52 Copynumber: 4.3 Consensus size: 51
26494160 CGAGATGTAC
* * * *
26494170 TTTATTTAGCAGGCCTTGAGTCAGTGATTATTTAGTAGGCCTTGAGCCGTCG
1 TTTATTTAGCAGGCCTTGAGCCGGTGATTATTTAGCAGGCCTTGAGCAGT-G
* ** *
26494222 TTTATTTAGCAGGTCTTGAGCCGGTGATTATTTAGCAGGCCTTGAGTTGATT
1 TTTATTTAGCAGGCCTTGAGCCGGTGATTATTTAGCAGGCCTTGAGCAG-TG
* ** *
26494274 TTTATTTAGCAGGCCTTGAGTCGGTTTTTATTTACCAGGCCTTGAGCTAGTG
1 TTTATTTAGCAGGCCTTGAGCCGGTGATTATTTAGCAGGCCTTGAGC-AGTG
* * *
26494326 TTTATTTAGCA-GCCTTTGAACCGGTGATTATTTAGTAGGCTTTGAGCTAGTG
1 TTTATTTAGCAGGCC-TTGAGCCGGTGATTATTTAGCAGGCCTTGAGC-AGTG
* *
26494378 ATTAGTTAGCAGG
1 TTTATTTAGCAGG
26494391 TACTATGTAC
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
51 3 0.02
52 135 0.96
53 3 0.02
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (51 bp):
TTTATTTAGCAGGCCTTGAGCCGGTGATTATTTAGCAGGCCTTGAGCAGTG
Found at i:26494304 original size:78 final size:78
Alignment explanation
Indices: 26494171--26494372 Score: 212
Period size: 78 Copynumber: 2.6 Consensus size: 78
26494161 GAGATGTACT
* * *
26494171 TTATTTAGCAGGCCTTGAGTCAGTGATTATTTAGTAGGCCTTGAGCCGTCGTTTATTTAGCAGGT
1 TTATTTAGCAGGCCTTGAGTCAGTGATTATTTAGCAGGCCTTGAGCCGTCGTTTATTTACCAGGC
*
26494236 CTTGAGCCGGTGA
66 CTTGAGCCAGTGA
* ** * *
26494249 TTATTTAGCAGGCCTTGAGT-TGATTTTTATTTAGCAGGCCTTGAGTCGGT-TTTTATTTACCAG
1 TTATTTAGCAGGCCTTGAGTCAG-TGATTATTTAGCAGGCCTTGAG-CCGTCGTTTATTTACCAG
* *
26494312 GCCTTGAGCTAGTGT
64 GCCTTGAGCCAGTGA
** * * *
26494327 TTATTTAGCA-GCCTTTGAACCGGTGATTATTTAGTAGGCTTTGAGC
1 TTATTTAGCAGGCC-TTGAGTCAGTGATTATTTAGCAGGCCTTGAGC
26494373 TAGTGATTAG
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
77 5 0.05
78 93 0.91
79 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (78 bp):
TTATTTAGCAGGCCTTGAGTCAGTGATTATTTAGCAGGCCTTGAGCCGTCGTTTATTTACCAGGC
CTTGAGCCAGTGA
Found at i:26495523 original size:54 final size:54
Alignment explanation
Indices: 26495411--26495516 Score: 124
Period size: 54 Copynumber: 2.0 Consensus size: 54
26495401 TAGGTTGGTT
* * ** ** *
26495411 AACACGGGCACAGTGAGATACACAGCCTGGGGACATGGCTGTGTGGCCCTGACA
1 AACACGGGCACAGAGAGATACACAGCCTGAGGACATACCCATGTGACCCTGACA
*
26495465 AACACGGGCACAGAGA-ATTATACAGCCTGAGGACATACCCATGTGACCCTGA
1 AACACGGGCACAGAGAGA-TACACAGCCTGAGGACATACCCATGTGACCCTGA
26495517 AGAACACAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.30, C:0.26, G:0.28, T:0.15
Consensus pattern (54 bp):
AACACGGGCACAGAGAGATACACAGCCTGAGGACATACCCATGTGACCCTGACA
Found at i:26513009 original size:126 final size:126
Alignment explanation
Indices: 26512771--26513030 Score: 355
Period size: 126 Copynumber: 2.1 Consensus size: 126
26512761 CTTTTGGGCT
* *
26512771 GACACTTTCCGAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACTCTTTGTATTAAGG
1 GACACTTTCCGAAGTGTTAGGATAGACTTGTCGACATACACTTTGGCCAACTATTTGTATTAAGG
* * *
26512836 TTGGGATAGGTATGCCTAAGGCAACACTTAAATAAGAGTTGGTTTTGTCCAGTACTATGCC
66 TTGGGATAGGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAGTACTATGCC
* *
26512897 GACATTTTCCTAAGTGTTAGGATAGACTTG-CTGACATACGA-TTTGGCCAACTATTTGTA-TAT
1 GACACTTTCCGAAGTGTTAGGATAGACTTGTC-GACATAC-ACTTTGGCCAACTATTTGTATTA-
* * ** * *
26512959 GGGTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATACT
63 AGGTTGGGATAGGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAGTACTATGCC
26513023 GACACTTT
1 GACACTTT
26513031 TGGGCTGACA
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
125 3 0.03
126 113 0.97
127 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (126 bp):
GACACTTTCCGAAGTGTTAGGATAGACTTGTCGACATACACTTTGGCCAACTATTTGTATTAAGG
TTGGGATAGGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAGTACTATGCC
Found at i:26515786 original size:15 final size:15
Alignment explanation
Indices: 26515766--26515796 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26515756 TGTAGCTCTG
26515766 ATACCATTAAATGTA
1 ATACCATTAAATGTA
26515781 ATACCATTAAATGTA
1 ATACCATTAAATGTA
26515796 A
1 A
26515797 CACCTCTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.32
Consensus pattern (15 bp):
ATACCATTAAATGTA
Found at i:26519183 original size:40 final size:39
Alignment explanation
Indices: 26519129--26519261 Score: 108
Period size: 40 Copynumber: 3.4 Consensus size: 39
26519119 CGTTTGAATT
* *
26519129 AAAAATGCCACTAAAAATCAAGCATTAGCGGCACTTTTAC
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCAATTTT-C
* * * * *
26519169 AAAAACGCCGCTAAAGATCGAGCATTAGCGGAAAATTTTG
1 AAAAACGCCACTAAAAATCAAGCATTAGCGG-CAATTTTC
* * * * *
26519209 GAAAACACCGCCAAAAAT-AAGCATTAGCGGC-GTTTTCC
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCAATTTT-C
26519247 AAAAAGCGCCACTAA
1 AAAAA-CGCCACTAA
26519262 TGCTCGTGCC
Statistics
Matches: 71, Mismatches: 19, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
37 4 0.06
38 4 0.06
39 17 0.24
40 41 0.58
41 5 0.07
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (39 bp):
AAAAACGCCACTAAAAATCAAGCATTAGCGGCAATTTTC
Found at i:26519304 original size:42 final size:39
Alignment explanation
Indices: 26519232--26519343 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 39
26519222 AAAATAAGCA
* * * *
26519232 TTAGCGGCGTTTTCCAAAAAGCGCCACTAATGCTCGTGCCT
1 TTAGCCGCGTTTTCAAAAAAGCGCCGCTAATGCT-G-ACCT
* * *
26519273 TTAGCGGGGTTTCTGAAAAAAGCGCCGCTAATGCTGACCT
1 TTAGCCGCGTTT-TCAAAAAAGCGCCGCTAATGCTGACCT
26519313 TTAGCCGCGTTTTCAAAAAAGCGCCGCTAAT
1 TTAGCCGCGTTTTCAAAAAAGCGCCGCTAAT
26519344 AATAAAATCT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 18 0.29
40 13 0.21
41 12 0.19
42 19 0.31
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
TTAGCCGCGTTTTCAAAAAAGCGCCGCTAATGCTGACCT
Found at i:26520752 original size:132 final size:132
Alignment explanation
Indices: 26520577--26520824 Score: 421
Period size: 132 Copynumber: 1.9 Consensus size: 132
26520567 TATATTTAAA
* *
26520577 AATGCTTTTATATTTAAAAATATTTAATCTAAACTATTTGATATATTTAAATATTATATTT-AAA
1 AATGCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATTAGATTTAAAA
26520641 AAA-ATTGATAAAAAATAAAAAAAA-TAACATATTGATATGAATAGGCAACTAAAATAGTTCTTC
66 AAACATTGAT---AAATAAAAAAAAGTAACATATTGATATGAATAGGCAACTAAAATAGTTCTTC
26520704 AAATT
128 AAATT
26520709 AATGCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATTAGATTTAAAA
1 AATGCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATTAGATTT-AAA
26520774 AAAACATTGATAAATAAAAAAAAGTAACATATTGATATGAATAGGCAACTA
65 AAAACATTGATAAATAAAAAAAAGTAACATATTGATATGAATAGGCAACTA
26520825 TCTATTTTAG
Statistics
Matches: 110, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
132 71 0.65
133 27 0.25
134 6 0.05
135 6 0.05
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.37
Consensus pattern (132 bp):
AATGCTTTTATATTTAAAAATATTTAATCTAAACCATTTGATATATTTAAATATTAGATTTAAAA
AAACATTGATAAATAAAAAAAAGTAACATATTGATATGAATAGGCAACTAAAATAGTTCTTCAAA
TT
Found at i:26525636 original size:43 final size:42
Alignment explanation
Indices: 26525566--26525751 Score: 194
Period size: 43 Copynumber: 4.3 Consensus size: 42
26525556 AAGTTATGTT
* * *
26525566 TTTAGCGGCGTTTCTGTGAGAAGCGCCGCTAAAGGT-TTGATC
1 TTTAGCGGCGTTTTTG-GAAAAGCGCCGCTAAAGGTCTTGGTC
* * * *
26525608 TATAGCGGCGTTTTTGACGAGAAGCGCCGCTAAAGTTCATGGTC
1 TTTAGCGGCGTTTTTG--GAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
26525652 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTT-TTGGAAAAGCGCCGCTAAAGGTCTTGGTC
** *
26525695 TTTAGCGGCGTTTGTATAAAAAAGCGCCGCTAAAGGTCTTGTTC
1 TTTAGCGGCGTTT-T-TGGAAAAGCGCCGCTAAAGGTCTTGGTC
26525739 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
26525752 GTTTCTAAAA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 14 0.11
43 56 0.46
44 51 0.41
45 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:26525741 original size:44 final size:44
Alignment explanation
Indices: 26525586--26525773 Score: 188
Period size: 44 Copynumber: 4.3 Consensus size: 44
26525576 TTTCTGTGAG
* * * * * *
26525586 AAGCGCCGCTAAAGGT-TTGATCTATAGCGGCGTTT-TTGACGAG
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTTCA-AAA
* ***
26525629 AAGCGCCGCTAAAGTTCATGGTCTTTAGCGGCGTTTG-TGGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTTCAAAA
*
26525672 AAGCGCTGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTAT-AAAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGT-TCAAAA
* * *
26525716 AAGCGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTTTCTAAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTG-TTCAAAA
26525761 AA-CGCCGCTAAAG
1 AAGCGCCGCTAAAG
26525774 TTAGCGACGC
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
43 52 0.42
44 66 0.53
45 7 0.06
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (44 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTTCAAAA
Found at i:26525741 original size:87 final size:86
Alignment explanation
Indices: 26525561--26525753 Score: 230
Period size: 87 Copynumber: 2.2 Consensus size: 86
26525551 TTTTAAAGTT
* * * *
26525561 ATGTT-TTTAGCGGCGTTTCTGTGAGAAGCGCCGCTAAAGGTTTGATCTATAGCGGCGTTTTTGA
1 ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTATGATCTATAGCGGCGTTTTTGA
* * *
26525625 CGAGAAGCGCCGCTAAAGTTC
66 CAAAAAGCGCCGCTAAAGGTC
* * * *
26525646 ATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTA
1 ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-ATGATCTATAGCGGCGTTT-T-
26525711 T-A-AAAAAGCGCCGCTAAAGGTC
63 TGACAAAAAGCGCCGCTAAAGGTC
*
26525733 TTGTTCTTTAGCGGCGTTTGT
1 ATGTTCTTTAGCGGCGTTTGT
26525754 TTCTAAAAAC
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
85 4 0.04
86 32 0.35
87 52 0.57
88 2 0.02
89 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.32
Consensus pattern (86 bp):
ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTATGATCTATAGCGGCGTTTTTGA
CAAAAAGCGCCGCTAAAGGTC
Found at i:26525877 original size:22 final size:22
Alignment explanation
Indices: 26525845--26525887 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26525835 TAGCGGTGCT
*
26525845 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
*
26525867 AAAAAGTGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
26525888 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:26538230 original size:40 final size:40
Alignment explanation
Indices: 26538180--26538392 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
26538170 AAGAAAATGT
* * *
26538180 CCCTAAATGCACATGCGTGCCCCTGATTGTACTTCAGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* * * *
26538220 CCCTGAATGCACATATG-GGCCCTTTTTGTACTTCGGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* * * * *
26538259 CTCTGAATGTACATATGTTCCCCTGTTTGTACTT-TGATAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAG-TAC
* **
26538299 CCCTGAATGCACATACGTGCCCCTTTTTGTACTTGGGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* * *
26538339 CCCTGAATGCACATACATGCCCCTATTTGTACTTCAGTTC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* *
26538379 CCTTGAAGGCACAT
1 CCCTGAATGCACAT
26538393 TTGTGCTCTA
Statistics
Matches: 144, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 34 0.24
40 109 0.76
41 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
Found at i:26538391 original size:80 final size:79
Alignment explanation
Indices: 26538180--26538392 Score: 250
Period size: 80 Copynumber: 2.7 Consensus size: 79
26538170 AAGAAAATGT
* * * *
26538180 CCCTAAATGCACATGCGTGCCCCTGA-TTGTACTTCAGTACCCCTGAATGCACATATGGGCCCTT
1 CCCTGAATGCACATACGTGCCCCT-ATTTGTACTTCAGTACCCCTGAATGCACATACGGCCCCTT
26538244 TTTGTACTTCGGTAC
65 TTTGTACTTCGGTAC
* * * * * *
26538259 CTCTGAATGTACATATGTTCCCCTGTTTGTACTT-TGATACCCCTGAATGCACATACGTGCCCCT
1 CCCTGAATGCACATACGTGCCCCTATTTGTACTTCAG-TACCCCTGAATGCACATACG-GCCCCT
*
26538323 TTTTGTACTTGGGTAC
64 TTTTGTACTTCGGTAC
* * * *
26538339 CCCTGAATGCACATACATGCCCCTATTTGTACTTCAGTTCCCTTGAAGGCACAT
1 CCCTGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAATGCACAT
26538393 TTGTGCTCTA
Statistics
Matches: 109, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 45 0.41
80 62 0.57
81 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (79 bp):
CCCTGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAATGCACATACGGCCCCTTT
TTGTACTTCGGTAC
Found at i:26540926 original size:56 final size:56
Alignment explanation
Indices: 26540856--26540973 Score: 139
Period size: 56 Copynumber: 2.1 Consensus size: 56
26540846 TCTATGCCTG
* * * * *
26540856 TGTGGGTATACTGACTTGGGACACAC-GATCAAACCACACGCCCGTGTGCTAGGCCA
1 TGTGAGTATACTGACTTAGGACACACAG-CCAAACCACACACCCGTATGCTAGGCCA
* * * *
26540912 TGTGAGTATACTGACTTAGGTCACACAGCCAAACTACACATCCGTATGCTAGGCCG
1 TGTGAGTATACTGACTTAGGACACACAGCCAAACCACACACCCGTATGCTAGGCCA
26540968 TGTGAG
1 TGTGAG
26540974 CTATTTGAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 51 0.98
57 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (56 bp):
TGTGAGTATACTGACTTAGGACACACAGCCAAACCACACACCCGTATGCTAGGCCA
Found at i:26542010 original size:25 final size:25
Alignment explanation
Indices: 26541960--26542053 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
26541950 ATTCATATAT
* *
26541960 GCTCATACGAGCTGTA-AACGGGAA
1 GCTCATGCGAGCTGAATAACGGGAA
* *
26541984 GCTCCTCCGAGCTGAATAACGGGAA
1 GCTCATGCGAGCTGAATAACGGGAA
* * *
26542009 GCTCATGAGAGCTGAATATCGAGAA
1 GCTCATGCGAGCTGAATAACGGGAA
*
26542034 GCTCATGCGAGCTGTATAAC
1 GCTCATGCGAGCTGAATAAC
26542054 AGACTGCTCG
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
24 13 0.22
25 45 0.78
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (25 bp):
GCTCATGCGAGCTGAATAACGGGAA
Found at i:26542113 original size:25 final size:24
Alignment explanation
Indices: 26542006--26542123 Score: 85
Period size: 25 Copynumber: 4.8 Consensus size: 24
26541996 TGAATAACGG
* * * *
26542006 GAAGCTCATGAGAGCTGAATATCGA
1 GAAGCTCATAAGAGTTGTATAAC-A
** *
26542031 GAAGCTCATGCGAGCTGTATAACA
1 GAAGCTCATAAGAGTTGTATAACA
* *
26542055 GACTGCTCGTAAGAGTTGTATAACA
1 GA-AGCTCATAAGAGTTGTATAACA
*
26542080 GGAAACTCATAAGAGTTGTA-AATCGA
1 -GAAGCTCATAAGAGTTGTATAA-C-A
*
26542106 GAAGCTCATAAGACTTGT
1 GAAGCTCATAAGAGTTGT
26542124 GGTGTGTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
24 5 0.07
25 68 0.89
26 3 0.04
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (24 bp):
GAAGCTCATAAGAGTTGTATAACA
Found at i:26544023 original size:5 final size:5
Alignment explanation
Indices: 26544008--26544061 Score: 94
Period size: 5 Copynumber: 11.2 Consensus size: 5
26543998 AAGATTTGGC
26544008 TATAA -ATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
26544057 T-TAA T
1 TATAA T
26544062 TATTGTACTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
4 8 0.17
5 40 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:26544173 original size:31 final size:31
Alignment explanation
Indices: 26544138--26544198 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
26544128 CAGTTAGATG
*
26544138 CTACAACCCTTTAAGAAAACACATAAAATTC
1 CTACAACCCTTTAAGAAAACACAAAAAATTC
26544169 CTACAACCCTTTAAGAAAACACAAAAAATT
1 CTACAACCCTTTAAGAAAACACAAAAAATT
26544199 TATATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.51, C:0.25, G:0.03, T:0.21
Consensus pattern (31 bp):
CTACAACCCTTTAAGAAAACACAAAAAATTC
Found at i:26554132 original size:20 final size:20
Alignment explanation
Indices: 26554079--26554124 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
26554069 ACAAAACTAG
26554079 AAAATAATTCAAAATAATTTT
1 AAAA-AATTCAAAATAATTTT
26554100 AAAAAATTCAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTT-T
26554120 AAAAA
1 AAAAA
26554125 TTCCAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.17
20 16 0.67
21 4 0.17
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTTT
Found at i:26554140 original size:19 final size:19
Alignment explanation
Indices: 26554101--26554140 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
26554091 AATAATTTTA
*
26554101 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTCAT
26554120 AAAAATTCCAAAA-ATTCAT
1 AAAAATT-CAAAATATTCAT
26554139 AA
1 AA
26554141 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAAATTCAAAATATTCAT
Found at i:26556250 original size:4 final size:4
Alignment explanation
Indices: 26556241--26556305 Score: 58
Period size: 4 Copynumber: 14.8 Consensus size: 4
26556231 AACTTGAGCC
* *
26556241 TTAT TTAT TTAT TCAT TTCATT TTAT TTAT TCAT TTCATT TTAT TTCAT
1 TTAT TTAT TTAT TTAT TT-A-T TTAT TTAT TTAT TT-A-T TTAT TT-AT
26556290 TTCAT TTAT TTAT TTA
1 TT-AT TTAT TTAT TTA
26556306 CAAGAAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
4 33 0.63
5 13 0.25
6 6 0.12
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:26556262 original size:5 final size:5
Alignment explanation
Indices: 26556252--26556304 Score: 60
Period size: 5 Copynumber: 11.4 Consensus size: 5
26556242 TATTTATTTA
* *
26556252 TTCAT TTCAT TTTAT TT-A- TTCAT TTCAT TTTAT TTCAT TTCAT TT-AT
1 TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT
26556299 TT-AT TT
1 TTCAT TT
26556305 ACAAGAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
3 2 0.05
4 10 0.23
5 31 0.72
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (5 bp):
TTCAT
Found at i:26556267 original size:18 final size:18
Alignment explanation
Indices: 26556244--26556303 Score: 92
Period size: 18 Copynumber: 3.6 Consensus size: 18
26556234 TTGAGCCTTA
26556244 TTTATTTATTCATTTCAT
1 TTTATTTATTCATTTCAT
26556262 TTTATTTATTCATTTCAT
1 TTTATTTATTCATTTCAT
26556280 TTTA--T-TTCATTTCA-
1 TTTATTTATTCATTTCAT
26556294 TTTATTTATT
1 TTTATTTATT
26556304 TACAAGAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.10
15 9 0.23
16 2 0.05
17 2 0.05
18 22 0.56
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTATTCATTTCAT
Found at i:26556885 original size:11 final size:10
Alignment explanation
Indices: 26556837--26556885 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
26556827 TAACATGTTG
*
26556837 AATTTTAATT
1 AATTTTTATT
*
26556847 AATTTTATAATA
1 AATTTT-T-ATT
26556859 AATTTTTATT
1 AATTTTTATT
26556869 AATTTTTATT
1 AATTTTTATT
*
26556879 TATTTTT
1 AATTTTT
26556886 GACAGATTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 24 0.73
11 1 0.03
12 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
AATTTTTATT
Found at i:26560156 original size:237 final size:237
Alignment explanation
Indices: 26559741--26560202 Score: 719
Period size: 237 Copynumber: 1.9 Consensus size: 237
26559731 CGGGAGTAGC
* * * *
26559741 CATTTTTGAATGTTGTCGTATCCTGCGCGATGTTCCAGGGTTAAAACCCTTGTAATCGTCCTTTG
1 CATTTTTGAATGTTGTCATATCCTGCGCGATGCTCCAGGGTTAAAACCCTCGTAATCATCCTTTG
* * *
26559806 GTGGGAACAGTATAGGTACGATCTCGCCTATTACGTTGATCATCTTACGACTAAAATTTTTGTCA
66 GTAGGAACAGTATAGGTACGACCTCGCCTATTACGTTGATCATCTTACGACTAAAATTTTTATCA
*
26559871 GACGAGCCGGGTGGTGGACTTGAATTTCCAACATCGTCAGTACTACTGTGTAGAGGCCTTGATGT
131 GACGAGCCGGGTGGTGGACTTGAATTTCCAACATCGTCAGTACTACTGTGTAGAGGCCTCGATGT
26559936 CTCATTTATCGGTGGTGGACAGGACCGAGTACCAGGAGTGGA
196 CTCATTTATCGGTGGTGGACAGGACCGAGTACCAGGAGTGGA
* * * * *
26559978 CATTTTTGAATGTTTTCATATCTTGCGTGATGCTCTAGGGTTGAAACCCTCGTAATCATCCTTTG
1 CATTTTTGAATGTTGTCATATCCTGCGCGATGCTCCAGGGTTAAAACCCTCGTAATCATCCTTTG
*
26560043 GTAGGAACAGTATAGGTATGACCTCGCCTATTACGTTGATCGA-CTTACGACTAAAATTTTTATC
66 GTAGGAACAGTATAGGTACGACCTCGCCTATTACGTTGATC-ATCTTACGACTAAAATTTTTATC
* * * * * *
26560107 AGATGAGTCGGGTGGTGGGCTTGAATTTCTAACATCGTCAGTACTACTGTGTGGAGGCGTCGATG
130 AGACGAGCCGGGTGGTGGACTTGAATTTCCAACATCGTCAGTACTACTGTGTAGAGGCCTCGATG
*
26560172 TCTCATTTATCGGTGGTTGACAGGACCGAGT
195 TCTCATTTATCGGTGGTGGACAGGACCGAGT
26560203 GGTGGACGAC
Statistics
Matches: 203, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
237 202 1.00
238 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (237 bp):
CATTTTTGAATGTTGTCATATCCTGCGCGATGCTCCAGGGTTAAAACCCTCGTAATCATCCTTTG
GTAGGAACAGTATAGGTACGACCTCGCCTATTACGTTGATCATCTTACGACTAAAATTTTTATCA
GACGAGCCGGGTGGTGGACTTGAATTTCCAACATCGTCAGTACTACTGTGTAGAGGCCTCGATGT
CTCATTTATCGGTGGTGGACAGGACCGAGTACCAGGAGTGGA
Found at i:26560770 original size:21 final size:22
Alignment explanation
Indices: 26560744--26560786 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
26560734 TCGATTTTGG
26560744 TCTTCTTC-TTTTTTTCTTTTT
1 TCTTCTTCATTTTTTTCTTTTT
26560765 TCTTCTTCTATTTTTTTCTTTT
1 TCTTCTTC-ATTTTTTTCTTTT
26560787 GACCGGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.40
23 12 0.60
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (22 bp):
TCTTCTTCATTTTTTTCTTTTT
Found at i:26571567 original size:13 final size:13
Alignment explanation
Indices: 26571551--26571575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26571541 GTTTTCAGAG
26571551 TATTTTTTGTTAT
1 TATTTTTTGTTAT
26571564 TATTTTTTGTTA
1 TATTTTTTGTTA
26571576 ATTCTTGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
TATTTTTTGTTAT
Found at i:26587631 original size:7 final size:7
Alignment explanation
Indices: 26587619--26587686 Score: 136
Period size: 7 Copynumber: 9.7 Consensus size: 7
26587609 TAGTCGATTG
26587619 GTATTTA
1 GTATTTA
26587626 GTATTTA
1 GTATTTA
26587633 GTATTTA
1 GTATTTA
26587640 GTATTTA
1 GTATTTA
26587647 GTATTTA
1 GTATTTA
26587654 GTATTTA
1 GTATTTA
26587661 GTATTTA
1 GTATTTA
26587668 GTATTTA
1 GTATTTA
26587675 GTATTTA
1 GTATTTA
26587682 GTATT
1 GTATT
26587687 ATGTATATAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 61 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:26588986 original size:7 final size:7
Alignment explanation
Indices: 26588966--26589005 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
26588956 ATTTACTAAA
26588966 AATTTAT
1 AATTTAT
26588973 AAATTTAT
1 -AATTTAT
26588981 AATTTAT
1 AATTTAT
26588988 AA-TTA-
1 AATTTAT
26588993 AATTTAT
1 AATTTAT
26589000 AATTTA
1 AATTTA
26589006 ATTGACAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.07
6 6 0.20
7 15 0.50
8 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AATTTAT
Found at i:26589016 original size:96 final size:96
Alignment explanation
Indices: 26588841--26589280 Score: 335
Period size: 108 Copynumber: 4.2 Consensus size: 96
26588831 TTGAGGTATT
* * *
26588841 ACTTAACAACCCTAAACTAATTTATTAAAAATTTATAAATTTATAAATTATAATTTAATTGACAA
1 ACTTAAAAACCCTAAACTAATTTACTAAAAATTTATAAATTTATAAATTATAATTAAATTGACAA
26588906 ACCCTAACAAAAACCCTAACCCTAACCTTTA
66 ACCCTAACAAAAACCCTAACCCTAACCTTTA
26588937 ACTTAAAAACCCTAAACTAATTTACTAAAAATTTATAAATTTATAATTTATAATTAAATTTATAA
1 ACTTAAAAACCCTAAACTAATTTACTAAAAA-TT-T--A--TA-AA-TT-T-A-TAAA-TTATAA
*
26589002 TTTAATTGACAAACCCTAACAAAAACCCTAACCCTAACCCTAATCCTTA
54 TTAAATTGACAAACCCTAACAAAAACCCTAACCCTAA-CC---T--TTA
* *
26589051 ACTTAAAAACTCTAAACCCTTAACTTAAAAACCCTAAACTAATTTATTAAAAATTTATAAATTTA
1 ACTTAAAAACCCTAAA--C-TAA-TT---TA--CTAAA--AATTTA-T--AAATTTATAAA-TTA
* * *** * * *
26589116 TGATTTATAATT-AAATTTATAATTTAATTGACAAACCCTAACCCTAACCCTTA
51 T-AATTA-AATTGACA---A-ACCCTAA--CAAAAACCCTAACCCTAACCTTTA
* * *
26589169 ACTTAAAAACCCTAAACTAATTTATTAAAAATTTATAAATTTATAATTTATAATTTAATTGACAA
1 ACTTAAAAACCCTAAACTAATTTACTAAAAATTTATAAATTTATAAATTATAATTAAATTGACAA
*
26589234 ACCCTAAC-AAAACCCTAACCCTAACCCTTA
66 ACCCTAACAAAAACCCTAACCCTAACCTTTA
26589264 ACTTAAAAACCCTAAAC
1 ACTTAAAAACCCTAAAC
26589281 CCTTAACATA
Statistics
Matches: 279, Mismatches: 25, Indels: 81
0.72 0.06 0.21
Matches are distributed among these distances:
95 38 0.14
96 29 0.10
97 2 0.01
98 5 0.02
99 1 0.00
100 1 0.00
101 4 0.01
102 7 0.03
103 6 0.02
104 12 0.04
105 1 0.00
106 2 0.01
107 10 0.04
108 43 0.15
109 6 0.02
111 1 0.00
112 1 0.00
114 20 0.07
115 3 0.01
116 2 0.01
117 12 0.04
118 26 0.09
119 5 0.02
120 4 0.01
121 5 0.02
122 5 0.02
123 8 0.03
124 18 0.06
125 2 0.01
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (96 bp):
ACTTAAAAACCCTAAACTAATTTACTAAAAATTTATAAATTTATAAATTATAATTAAATTGACAA
ACCCTAACAAAAACCCTAACCCTAACCTTTA
Found at i:26589071 original size:22 final size:22
Alignment explanation
Indices: 26589037--26589089 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
26589027 CCCTAACCCT
*
26589037 AACCCT-AATCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
*
26589058 AACTCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
26589080 AACCCTAAAC
1 AACCCTAAAC
26589090 TAATTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (22 bp):
AACCCTAAACCCTTAACTTAAA
Found at i:26589367 original size:22 final size:21
Alignment explanation
Indices: 26589250--26589364 Score: 151
Period size: 22 Copynumber: 5.4 Consensus size: 21
26589240 ACAAAACCCT
26589250 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
26589271 AACCCTAAACCCTTAACATAAA
1 AACCCT-AACCCTTAACTTAAA
*
26589293 AACTCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
26589315 AACCCTAACCCTTATCTT-AA
1 AACCCTAACCCTTAACTTAAA
* *
26589335 AACATCTAACTCTTAACTTAAA
1 AAC-CCTAACCCTTAACTTAAA
26589357 AACCCTAA
1 AACCCTAA
26589365 ACTAATTTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
20 5 0.06
21 33 0.40
22 44 0.54
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:26589476 original size:21 final size:21
Alignment explanation
Indices: 26589450--26589519 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
26589440 CCCTAACCTT
*
26589450 AACCCTAACCCTTAACTTAAA
1 AACCCTAACACTTAACTTAAA
*
26589471 AACCCTAACTCTTAACTTAAA
1 AACCCTAACACTTAACTTAAA
*
26589492 AACCCTAACATTTAACTT-AA
1 AACCCTAACACTTAACTTAAA
26589512 AACCCTAA
1 AACCCTAA
26589520 ACTAATTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 10 0.22
21 36 0.78
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (21 bp):
AACCCTAACACTTAACTTAAA
Found at i:26589490 original size:156 final size:155
Alignment explanation
Indices: 26589300--26589676 Score: 575
Period size: 155 Copynumber: 2.4 Consensus size: 155
26589290 AAAAACTCTA
* *
26589300 AACCCTTAACTTAAAAACCCTAACCCTTATCTTAAAACATCTAACTCTTAACTTAAAAACCCTAA
1 AACCCTTAACTTAAAAACCCTAA-CCTTAACTTAAAACACCTAACTCTTAACTTAAAAACCCTAA
*
26589365 ACTAATTTATTAAAAACTTATAAATTTATAATTTATAAATATATTTATAATTTAATTGACAAACC
65 ACTAATTTATTAAAAACTTATAAATTTATAATTTATAAATACATTTATAATTTAATTGACAAACC
*
26589430 CTAATAAAAACCCTAAC-CTTAACCCT
130 CTAACAAAAACCCTAACAC-TAACCCT
26589456 AACCCTTAACTTAAAAACCCTAACTCTTAACTTAAAA-ACCCTAACAT-TTAACTT-AAAACCCT
1 AACCCTTAACTTAAAAACCCTAAC-CTTAACTTAAAACA-CCTAAC-TCTTAACTTAAAAACCCT
* * *
26589518 AAACTAATTTATTAAAAATTTATAAATTTATAATTTATAATTACATTTATAATTTAATTGACAGA
63 AAACTAATTTATTAAAAACTTATAAATTTATAATTTATAAATACATTTATAATTTAATTGACAAA
26589583 CCCTAACAAAAACCCTAACACTAACCCT
128 CCCTAACAAAAACCCTAACACTAACCCT
*
26589611 AACCCTTAACTTAAAAACCCTAAACCATTAACTTTAAAAC-CCTAACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT-AACC-TTAAC-TTAAAACACCTAACTCTTAACTTAAAAACCCT
26589675 AA
63 AA
26589677 CCATTAACTT
Statistics
Matches: 203, Mismatches: 8, Indels: 19
0.88 0.03 0.08
Matches are distributed among these distances:
155 118 0.58
156 68 0.33
157 17 0.08
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.31
Consensus pattern (155 bp):
AACCCTTAACTTAAAAACCCTAACCTTAACTTAAAACACCTAACTCTTAACTTAAAAACCCTAAA
CTAATTTATTAAAAACTTATAAATTTATAATTTATAAATACATTTATAATTTAATTGACAAACCC
TAACAAAAACCCTAACACTAACCCT
Found at i:26589631 original size:21 final size:21
Alignment explanation
Indices: 26589605--26589693 Score: 142
Period size: 21 Copynumber: 4.2 Consensus size: 21
26589595 CCCTAACACT
*
26589605 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCATTAACTTAAA
*
26589626 AACCCTAAACCATTAACTTTAA
1 AACCCT-AACCATTAACTTAAA
*
26589648 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCATTAACTTAAA
26589669 AACCCTAACCATTAACTTAAA
1 AACCCTAACCATTAACTTAAA
26589690 AACC
1 AACC
26589694 TTAAAACCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
21 43 0.69
22 19 0.31
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (21 bp):
AACCCTAACCATTAACTTAAA
Found at i:26589654 original size:43 final size:42
Alignment explanation
Indices: 26589605--26589693 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 42
26589595 CCCTAACACT
*
26589605 AACCCTAACCCTTAACTTAAAAACCCTAAACCATTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCT-AACCATTAACTTAAA
26589648 AACCCTAACCCTTAACTTAAAAACCCTAACCATTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAACCATTAACTTAAA
26589690 AACC
1 AACC
26589694 TTAAAACCCT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 18 0.40
43 27 0.60
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (42 bp):
AACCCTAACCCTTAACTTAAAAACCCTAACCATTAACTTAAA
Found at i:26589718 original size:20 final size:21
Alignment explanation
Indices: 26589689--26589731 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
26589679 ATTAACTTAA
*
26589689 AAACCTTAAAACCCT-ACCCT
1 AAACCCTAAAACCCTAACCCT
26589709 AAACCCTAAAACCCTAACCCT
1 AAACCCTAAAACCCTAACCCT
26589730 AA
1 AA
26589732 TATGATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (21 bp):
AAACCCTAAAACCCTAACCCT
Found at i:26593028 original size:125 final size:125
Alignment explanation
Indices: 26592800--26593235 Score: 597
Period size: 125 Copynumber: 3.5 Consensus size: 125
26592790 CAAACATGCT
* * * * ** * * *
26592800 ACTGTTGCAAAAGTGCGCCCACGAGGGCGCGGTTTCATAAATTCTTCTGATAAAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTAAGAAATTCTTCTGATAAAGCATCCTACTT
* * * * *
26592865 GAAGCATTTTTTATACTATTCATTCAGAAATGTCAACTCAAAATTATTTTTTTAGGACCT
66 GAAGCGTTTTTTATACTATTCACTCAGAAACGTCAACTCGAAATTATTTTTTTAGGACCA
* * *
26592925 ATTGTAGCAAAAGCGTGTCCACGTGGGCGCAATTTAAGAAATTCTTCTAATAAAGCATCCTACTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTAAGAAATTCTTCTGATAAAGCATCCTACTT
* *
26592990 GAAGCGTTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
66 GAAGCGTTTTTTATACTATTCACTCAGAAACGTCAACTCGAAATTATTTTTTTAGGACCA
* *
26593050 ACTGGAGCAAAAGCGCGTCCACGTGGGCGCAATTTTAGAAATTCTTCTGATAAAGCATCC-ATCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTAAGAAATTCTTCTGATAAAGCATCCTA-CT
** *
26593114 TGAAGCG-TTTTTATACTATTTTCTCAGAAGCGTCAACTCGAAATTATTTTTTTAGGACCA
65 TGAAGCGTTTTTTATACTATTCACTCAGAAACGTCAACTCGAAATTATTTTTTTAGGACCA
* * * *
26593174 ACTGTAGGAAAAGCGCGTCCACGTGGGCACGATTTCAGAAATTCTTCTGATAAAGCATCCTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTAAGAAATTCTTCTGATAAAGCATCCTA
26593236 AACCCTAAAC
Statistics
Matches: 276, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
124 105 0.38
125 171 0.62
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (125 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCAATTTAAGAAATTCTTCTGATAAAGCATCCTACTT
GAAGCGTTTTTTATACTATTCACTCAGAAACGTCAACTCGAAATTATTTTTTTAGGACCA
Found at i:26593322 original size:21 final size:22
Alignment explanation
Indices: 26593283--26593324 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26593273 CTTTAAAACC
* *
26593283 CTAAAAACCTTAAACCCTAACT
1 CTAAAAACCTCAAAACCTAACT
26593305 CTAAAAA-CTCAAAACCTAAC
1 CTAAAAACCTCAAAACCTAAC
26593325 AATGGAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (22 bp):
CTAAAAACCTCAAAACCTAACT
Found at i:26596015 original size:24 final size:25
Alignment explanation
Indices: 26595973--26596031 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
26595963 TTTTCTTTGC
* ** *
26595973 ATATTATTTACTTTTAATTG-CTTT
1 ATATTATTTACCTCAAATTGTCTAT
26595997 ATATTATTTACCTCAAATTGTTCTAT
1 ATATTATTTACCTCAAATTG-TCTAT
26596023 ATATTATTT
1 ATATTATTT
26596032 CATTTTCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 17 0.59
26 12 0.41
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.58
Consensus pattern (25 bp):
ATATTATTTACCTCAAATTGTCTAT
Found at i:26599630 original size:24 final size:24
Alignment explanation
Indices: 26599522--26599653 Score: 180
Period size: 25 Copynumber: 5.5 Consensus size: 24
26599512 ATACGAAACA
* *
26599522 AATA-CAGAGAGCACAAATGTGCT
1 AATATCAGAGAGCACCAACGTGCT
**
26599545 AA-A-CAGAGAGCACTGACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
26599567 AAATATCAGAGAGCACCAACGTGCT
1 -AATATCAGAGAGCACCAACGTGCT
26599592 AATAATCAGAGAGCACCAACGTGCT
1 AAT-ATCAGAGAGCACCAACGTGCT
*
26599617 AATATCAGAAAGCACCAACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
26599641 AATATCAGAGAGC
1 AATATCAGAGAGC
26599654 GCACTAAAGT
Statistics
Matches: 98, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
22 17 0.17
23 4 0.04
24 36 0.37
25 41 0.42
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (24 bp):
AATATCAGAGAGCACCAACGTGCT
Found at i:26599636 original size:49 final size:49
Alignment explanation
Indices: 26599521--26599653 Score: 175
Period size: 49 Copynumber: 2.8 Consensus size: 49
26599511 TATACGAAAC
* * * **
26599521 AAATA-CAGAGAGCACAAATGTGCTAA-A-CAGAGAGCACTGACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
*
26599567 AAATATCAGAGAGCACCAACGTGCTAATAATCAGAGAGCACCAACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAAT-ATCAGAGAGCACCAACGTGCT
26599617 -AATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
26599654 GCACTAAAGT
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
46 5 0.06
47 19 0.24
48 10 0.13
49 27 0.35
50 17 0.22
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (49 bp):
AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
Found at i:26600493 original size:12 final size:13
Alignment explanation
Indices: 26600476--26600507 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26600466 GATTTCCATC
26600476 AATTCAAT-CACT
1 AATTCAATCCACT
26600488 AATTC-ATCCACT
1 AATTCAATCCACT
26600500 AATTCAAT
1 AATTCAAT
26600508 ATAAGCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.78
13 2 0.11
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTCAATCCACT
Found at i:26600696 original size:11 final size:11
Alignment explanation
Indices: 26600680--26600705 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26600670 TCTTTCTTTC
26600680 TTTCTCCCCTG
1 TTTCTCCCCTG
26600691 TTTCTCCCCTG
1 TTTCTCCCCTG
26600702 TTTC
1 TTTC
26600706 GTTTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:26600775 original size:5 final size:5
Alignment explanation
Indices: 26600765--26600799 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
26600755 TATATATATA
*
26600765 ATAAT ATAAT ATAAT ATTAT AATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAA
26600800 CAACTCACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:26600785 original size:21 final size:22
Alignment explanation
Indices: 26600756--26600799 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
26600746 CTTTTGCTTT
26600756 ATATATATAATAATATAATATA
1 ATATATATAATAATATAATATA
26600778 ATAT-TATAATAATATAATATA
1 ATATATATAATAATATAATATA
26600799 A
1 A
26600800 CAACTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATATATAATAATATAATATA
Found at i:26606892 original size:24 final size:24
Alignment explanation
Indices: 26606784--26606915 Score: 171
Period size: 25 Copynumber: 5.5 Consensus size: 24
26606774 ATACGGAACA
* *
26606784 AATA-CAGAGAGCACAAATGTGCT
1 AATATCAGAGAGCACCAACGTGCT
**
26606807 AA-A-CAGAGAGCACTGACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
*
26606829 AAATATCAGAGAGCATCAACGTGCT
1 -AATATCAGAGAGCACCAACGTGCT
26606854 AATAATCAGAGAGCACCAACGTGCT
1 AAT-ATCAGAGAGCACCAACGTGCT
*
26606879 AATATCAGAAAGCACCAACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
26606903 AATATCAGAGAGC
1 AATATCAGAGAGC
26606916 GCGCTAAAGT
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
22 17 0.18
23 4 0.04
24 36 0.38
25 39 0.41
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (24 bp):
AATATCAGAGAGCACCAACGTGCT
Found at i:26606902 original size:49 final size:49
Alignment explanation
Indices: 26606783--26606915 Score: 166
Period size: 49 Copynumber: 2.8 Consensus size: 49
26606773 TATACGGAAC
* * * **
26606783 AAATA-CAGAGAGCACAAATGTGCTAA-A-CAGAGAGCACTGACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
* *
26606829 AAATATCAGAGAGCATCAACGTGCTAATAATCAGAGAGCACCAACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAAT-ATCAGAGAGCACCAACGTGCT
26606879 -AATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
26606916 GCGCTAAAGT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
46 5 0.07
47 18 0.24
48 10 0.13
49 26 0.34
50 17 0.22
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (49 bp):
AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
Found at i:26607754 original size:12 final size:13
Alignment explanation
Indices: 26607737--26607768 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26607727 GATTTCCATC
26607737 AATTCAAT-CACT
1 AATTCAATCCACT
26607749 AATTC-ATCCACT
1 AATTCAATCCACT
26607761 AATTCAAT
1 AATTCAAT
26607769 ATAAGCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.78
13 2 0.11
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTCAATCCACT
Found at i:26607957 original size:11 final size:11
Alignment explanation
Indices: 26607941--26607966 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26607931 TCTTTCTTTC
26607941 TTTCTCCCCTG
1 TTTCTCCCCTG
26607952 TTTCTCCCCTG
1 TTTCTCCCCTG
26607963 TTTC
1 TTTC
26607967 GTTTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:26608036 original size:5 final size:5
Alignment explanation
Indices: 26608026--26608060 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
26608016 TATATATATA
*
26608026 ATAAT ATAAT ATAAT ATTAT AATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAA
26608061 CAACTCACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:26608046 original size:21 final size:22
Alignment explanation
Indices: 26608017--26608060 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
26608007 CTTTTGCTTT
26608017 ATATATATAATAATATAATATA
1 ATATATATAATAATATAATATA
26608039 ATAT-TATAATAATATAATATA
1 ATATATATAATAATATAATATA
26608060 A
1 A
26608061 CAACTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATATATAATAATATAATATA
Found at i:26617333 original size:948 final size:948
Alignment explanation
Indices: 26615132--26617917 Score: 4585
Period size: 948 Copynumber: 2.9 Consensus size: 948
26615122 TGCTATCTCC
* **
26615132 CACGAGATGAAAATTAGATGGCTGACGCGTTGGCTACTCTAGCCAACATGATTAAAATGAACAGA
1 CACGAGATGAAAATCAGATGGCTGACGCGTTGGCTACTCTAGCCTCCATGATTAAAATGAACAGA
*
26615197 CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAACCCCAGCTCACTGTTACAATATCAA
66 CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAACCCCAGCTCACTGTTACAATATCGA
*
26615262 AGAGGGAGAAAAAGATGATAGCCATTGGTATAAAGATATATTGCGATATGTGAAGAATCGTGAGT
131 AGAGGGAGAAAAAGATGATAGCCCTTGGTATAAAGATATATTGCGATATGTGAAGAATCGTGAGT
*
26615327 ATCCTGACCAGGCAACTGAGAATGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCTT-
196 ATCCTGAACAGGCAACTGAGAATGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCTTA
* * * *
26615391 TATGGGGAGATCTTATATAAAAGGGGAAAGGAACATGTACTATTAAGATGTGTGGACGCTGTGAA
261 GATGGGGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGACGCTGTGAA
*
26615456 GGCTAAGAAAATATTAGAGGAGGTTCATGAGGGTATTTGCGGAACGCATGCCAGTGGGTTCACAA
326 GGCTAAGAAAATATTAGAGGAGGTCCATGAGGGTATTTGCGGAACGCATGCCAGTGGGTTCACAA
* * * * *
26615521 TGGTTAGACAGATTATGAGGTTCAGGTACTACTGGTTCACCATAGAATGAGATTGTATCAATTAT
391 TGGCTAGACAGATTATGAGGTTCGGGTACTACTGGTCCACCATAGAAGGAGATTGCATCAATTAT
* *
26615586 GCCAAGAAGTACCATAAATG-CTAAATTTATGGTGATAAAGTGTATGCACCTCCTTTGCCTCTTC
456 GCCAAGAAGTGCCATAAATGCCT-AATTTATGGTGATAAAGTGCATGCACCTCCTTTGCCTCTTC
* *
26615650 ATGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTAT-GATGTCATTGGGCCAATATTGTCG
520 ATGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCGTCG
26615714 AAGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAGC
585 AAGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAGC
26615779 TGCTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAAGGAGATCATATGTC
650 TGCTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAAGGAGATCATATGTC
** * *
26615844 GATATGGAATGCCCGAAAGAATCATATCTGACAATATGTTGAATTTGAACAAGAGCTTAATAGTA
715 GATATGGAATGCCCGAAAGAATCATATCTGACAATGCGTTGAATTTGAACAAGAGCTCAATAGTG
* *
26615909 GATGTCTGCAGTCAATTTAAGATCAGGCACCATGATTCGTCACCGTACTGCCTAAAAATGAATGG
780 GATGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTACTGCCTAAAAATGAATGG
* *
26615974 TGCAATGGAAGCGGACAATAAAAATATCAAGAAAATTGTGGGAAAAATGACTGAGACTTACAAGG
845 TGCAATGGAAGCGGCCAATAAAAATATC------A-----GG-AAAATGACTAAGACTTACAAGG
* *
26616039 ACTGGCATGAGAAATAAATAAACAAGACTTACAAGGACTTACAAGGACTGG
898 ACTGGCATCAGAAATAAACAAACAAGACTTACAAGGACTTACAAGGACTGG
* * *
26616090 CACGATATGAAAATCAGATGGCTGACGCATTGGCTACTCTAGCCTCCAAGATTAAAATGAACAGA
1 CACGAGATGAAAATCAGATGGCTGACGCGTTGGCTACTCTAGCCTCCATGATTAAAATGAACAGA
* * * *
26616155 CAAGAGGACATAAAGCCTATCCAGATGAGCATCTATGGAACCCCAGCTCACTGTTACAATATTGA
66 CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAACCCCAGCTCACTGTTACAATATCGA
* * *
26616220 AGAGAGAGAAAATA-ATGATAGCCCTTGGTATAAAGATATATTGTGATATGTGAAAAATCGTGAG
131 AGAGGGAGAAAA-AGATGATAGCCCTTGGTATAAAGATATATTGCGATATGTGAAGAATCGTGAG
*
26616284 TATCCT-AACTAGGCAACTGAGAAGGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCT
195 TATCCTGAAC-AGGCAACTGAGAATGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCT
* *
26616348 TAGATGGTGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGATGCTGTG
259 TAGATGGGGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGACGCTGTG
* * *
26616413 AAGGCTAAGAAAATATCAGAGGAAGTCCATGAGGGTATTTGCGGAACGCATGCCAATGGGTTCAC
324 AAGGCTAAGAAAATATTAGAGGAGGTCCATGAGGGTATTTGCGGAACGCATGCCAGTGGGTTCAC
* *
26616478 AATGGCTAGACAGATTATAAGGTTCGGGTACTGCTGGTCCACCATAGAAGGAGATTGCATCAATT
389 AATGGCTAGACAGATTATGAGGTTCGGGTACTACTGGTCCACCATAGAAGGAGATTGCATCAATT
**
26616543 ATGCCAAGAAGTGCCATAAATGCCTAATTTATGGTGATAAAGTGCATGCACCTCCTTCACCTCTT
454 ATGCCAAGAAGTGCCATAAATGCCTAATTTATGGTGATAAAGTGCATGCACCTCCTTTGCCTCTT
26616608 CATGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCGTC
519 CATGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCGTC
* *
26616673 GAAGGCTTCTAATAGGTATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAG
584 GAAGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAG
* *
26616738 CTACTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAATGAGATCATATGT
649 CTGCTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAAGGAGATCATATGT
** * *
26616803 CGATATGGAATGCTTGAAAGAATCATATCTGACAATGGGTTGAATTTGAACAAGAGCTCAATAGC
714 CGATATGGAATGCCCGAAAGAATCATATCTGACAATGCGTTGAATTTGAACAAGAGCTCAATAGT
*
26616868 GGATGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTATTGCCTAAAAATGAATG
779 GGATGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTACTGCCTAAAAATGAATG
* *
26616933 GTGCAATGGAAGCGGCCAATAAAAATATCAGGAAAATGACTAAGACTTATAAGGATTGGCATCAG
844 GTGCAATGGAAGCGGCCAATAAAAATATCAGGAAAATGACTAAGACTTACAAGGACTGGCATCAG
* *
26616998 AAATAAACAGACAATACTTACAAGGACTTACAAGGACTGG
909 AAATAAACAAACAAGACTTACAAGGACTTACAAGGACTGG
*
26617038 CACGAGATGAAAATCAGATGGCTGACGCGTTGGTTACTCTAGCCTCCATGATTAAAATGAACAGA
1 CACGAGATGAAAATCAGATGGCTGACGCGTTGGCTACTCTAGCCTCCATGATTAAAATGAACAGA
*
26617103 CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAATCCCAGCTCACTGTTACAATATCGA
66 CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAACCCCAGCTCACTGTTACAATATCGA
* *
26617168 AGAGGGAGAAAAGGATGATAGCCCTTGGTATAAAGATATATTACGATATGTGAAGAATCGTGAGT
131 AGAGGGAGAAAAAGATGATAGCCCTTGGTATAAAGATATATTGCGATATGTGAAGAATCGTGAGT
* ** * * *
26617233 ATCCTGAACAGGTAGGTGAGAATGATAAGAGAGCTCTGAGAAGACTAGCCATTGACTATGTCTTA
196 ATCCTGAACAGGCAACTGAGAATGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCTTA
26617298 GATGGGGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGACGCTGTGAA
261 GATGGGGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGACGCTGTGAA
* * *
26617363 GGCTAAGAAAATCTTAGAGGAGGTCCATGAGAGTATTTGCGGAATGCATGCCAGTGGGTTCACAA
326 GGCTAAGAAAATATTAGAGGAGGTCCATGAGGGTATTTGCGGAACGCATGCCAGTGGGTTCACAA
*
26617428 TGGCTAGACAGATTATGAGATTCGGGTACTACTGGTCCACCATAGAAGGAGATTGCATCAATTAT
391 TGGCTAGACAGATTATGAGGTTCGGGTACTACTGGTCCACCATAGAAGGAGATTGCATCAATTAT
*
26617493 GCCAAGAAGTGCCATAAATGCCAAATTTATGGTGATAAAGTGCATGCACCTCCTTTGCCTCTTCA
456 GCCAAGAAGTGCCATAAATGCCTAATTTATGGTGATAAAGTGCATGCACCTCCTTTGCCTCTTCA
26617558 TGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCG-CTG
521 TGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCGTC-G
26617622 AAGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAGC
585 AAGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAGC
* * * *
26617687 TGCTTCGTATTCTAATATCACAAAGTTAGCAGTCAGCAAGTTCCTGAAAAAGGAGATCATATGTC
650 TGCTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAAGGAGATCATATGTC
* *
26617752 GATATGGAATGCCCGAAAGAATCATATCTGACAATGCGTTGAATTTGAACAACAGTTCAATAGTG
715 GATATGGAATGCCCGAAAGAATCATATCTGACAATGCGTTGAATTTGAACAAGAGCTCAATAGTG
* *
26617817 GAGGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTACTGTCTAAAAATGAATGG
780 GATGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTACTGCCTAAAAATGAATGG
* * *
26617882 TGAAATGGAAGCGGCTAATAAAAATATCAAGAAAAT
845 TGCAATGGAAGCGGCCAATAAAAATATCAGGAAAAT
26617918 TGTGAGGAAA
Statistics
Matches: 1703, Mismatches: 117, Indels: 26
0.92 0.06 0.01
Matches are distributed among these distances:
947 1 0.00
948 884 0.52
949 5 0.00
954 1 0.00
957 2 0.00
958 237 0.14
959 276 0.16
960 297 0.17
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (948 bp):
CACGAGATGAAAATCAGATGGCTGACGCGTTGGCTACTCTAGCCTCCATGATTAAAATGAACAGA
CAATAGGACATGAAGCCTATCCAGATGAGCATCTATGAAACCCCAGCTCACTGTTACAATATCGA
AGAGGGAGAAAAAGATGATAGCCCTTGGTATAAAGATATATTGCGATATGTGAAGAATCGTGAGT
ATCCTGAACAGGCAACTGAGAATGATAAAAGGGCTCTGAGAAGACTAGCCATTGATTATGTCTTA
GATGGGGAGATCTTATATAAAAAGGGAAAGGATCAGGTACTATTAAGATGTGTGGACGCTGTGAA
GGCTAAGAAAATATTAGAGGAGGTCCATGAGGGTATTTGCGGAACGCATGCCAGTGGGTTCACAA
TGGCTAGACAGATTATGAGGTTCGGGTACTACTGGTCCACCATAGAAGGAGATTGCATCAATTAT
GCCAAGAAGTGCCATAAATGCCTAATTTATGGTGATAAAGTGCATGCACCTCCTTTGCCTCTTCA
TGTTATGACTTCTCCATGGCCTTTCTCTATGTGGGGTATGGATGTCATCGGGCCAATATCGTCGA
AGGCTTCTAATGGGCATCGTTTCATCTTTCTGGTTATTGATTACTTCACTAAATGGGTAGAAGCT
GCTTCGTATGCTAATGTCACAAAGTCAGCAGTCAGCAAGTTCTTGAAAAAGGAGATCATATGTCG
ATATGGAATGCCCGAAAGAATCATATCTGACAATGCGTTGAATTTGAACAAGAGCTCAATAGTGG
ATGTCTGCAGTCAATTTAAGATCAGACACCATAATTCGTCACCGTACTGCCTAAAAATGAATGGT
GCAATGGAAGCGGCCAATAAAAATATCAGGAAAATGACTAAGACTTACAAGGACTGGCATCAGAA
ATAAACAAACAAGACTTACAAGGACTTACAAGGACTGG
Found at i:26620060 original size:132 final size:132
Alignment explanation
Indices: 26619823--26620222 Score: 566
Period size: 132 Copynumber: 3.0 Consensus size: 132
26619813 TGGATTGAAG
* ** * *
26619823 AAGATGGTGAATCTTATCTTCCCGAGGTAGTAGATAAGCAGGTTTAAGCCACCAGTCCTGTCTCC
1 AAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCC
*
26619888 CTAAGCAGCAGTGGAGTAGGTTGAAGATTATGGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGAT
66 CTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGAT
*
26619953 CC
131 CA
* * *
26619955 AAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACCAATCCTATCTTC
1 AAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCC
* * * * *
26620020 CTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCCTGTCTCCTTAAGTAGTAGTGGAGCAGAT
66 CTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGAT
26620085 CA
131 CA
* * *
26620087 AAGATGGTGAATTTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAACCACCAGTCCTATCTCC
1 AAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCC
* * * * * * *
26620152 CAAAGTAGCAGTGGAGTAGGTTCAAGATTATAGATCATGTATCTCTGAGCAGTAGTGGAGCAGAT
66 CTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGAT
*
26620217 CG
131 CA
26620219 AAGA
1 AAGA
26620223 CAACGAATCT
Statistics
Matches: 234, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
132 234 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (132 bp):
AAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCC
CTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGAT
CA
Found at i:26620281 original size:50 final size:50
Alignment explanation
Indices: 26620226--26620386 Score: 205
Period size: 50 Copynumber: 3.2 Consensus size: 50
26620216 TCGAAGACAA
* * * *
26620226 CGAATCTTACTTCTTCAACGTTACAGTAAAACAGATTGAAGCTACAACAG
1 CGAATCTTACTTCTCCGACGTTGCAGTAAAACAGATTAAAGCTACAACAG
* * * * * *
26620276 TGAATCTTACTTCCCCGACGTTGCAGTGAAGCGGGTTAAAGCTACAACAG
1 CGAATCTTACTTCTCCGACGTTGCAGTAAAACAGATTAAAGCTACAACAG
* * *
26620326 CGAATCTTAGTTCTCCGACGTTGCAATAAAATAGATTAAAGCTACAACAG
1 CGAATCTTACTTCTCCGACGTTGCAGTAAAACAGATTAAAGCTACAACAG
26620376 CGAATCTTACT
1 CGAATCTTACT
26620387 ACCCTAGCAT
Statistics
Matches: 91, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 91 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (50 bp):
CGAATCTTACTTCTCCGACGTTGCAGTAAAACAGATTAAAGCTACAACAG
Found at i:26620830 original size:11 final size:11
Alignment explanation
Indices: 26620808--26620842 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
26620798 AGTCATCGTA
26620808 CGCCGCCCTTCG
1 CGCCG-CCTTCG
26620820 CGCCGCCTTCG
1 CGCCGCCTTCG
*
26620831 CGACGCCTTCG
1 CGCCGCCTTCG
26620842 C
1 C
26620843 CGCATGTGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.03, C:0.54, G:0.26, T:0.17
Consensus pattern (11 bp):
CGCCGCCTTCG
Found at i:26621869 original size:25 final size:25
Alignment explanation
Indices: 26621815--26621880 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
26621805 TTTTGAACTT
* *
26621815 ATATTATTTCTTTTAAATTGTTCTA
1 ATATTATTTATTTTAAATTGTTCCA
*
26621840 TTATTATTTATTTTAAATT-TTCCA
1 ATATTATTTATTTTAAATTGTTCCA
**
26621864 CATATTATGCATTTTAA
1 -ATATTATTTATTTTAA
26621881 GCTATATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 4 0.12
25 30 0.88
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.58
Consensus pattern (25 bp):
ATATTATTTATTTTAAATTGTTCCA
Found at i:26622133 original size:23 final size:23
Alignment explanation
Indices: 26622101--26622148 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
26622091 TGGTTATTTA
* *
26622101 TTTTAATTTGCTTTGTATGTTAT
1 TTTTAATTTGCTTTGCATATTAT
*
26622124 TTTTATTTTGCTTTGCATATTAT
1 TTTTAATTTGCTTTGCATATTAT
26622147 TT
1 TT
26622149 ACTTTGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.06, G:0.10, T:0.67
Consensus pattern (23 bp):
TTTTAATTTGCTTTGCATATTAT
Found at i:26628529 original size:24 final size:24
Alignment explanation
Indices: 26628502--26628550 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26628492 TAAACAACTT
26628502 TTGAATTAATGGTTTATCATATTA
1 TTGAATTAATGGTTTATCATATTA
26628526 TTGAATTAATGGTTTATCATATTA
1 TTGAATTAATGGTTTATCATATTA
26628550 T
1 T
26628551 AACATGTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.51
Consensus pattern (24 bp):
TTGAATTAATGGTTTATCATATTA
Found at i:26629499 original size:26 final size:27
Alignment explanation
Indices: 26629451--26629501 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
26629441 TAAACCAAAC
*
26629451 TTTTAATAAGCACTTTTCCACAACACT
1 TTTTAATAAGCACTTTTCAACAACACT
26629478 TTTTAA-AAGCACTTCTT-AACAACA
1 TTTTAATAAGCACTT-TTCAACAACA
26629502 ATGCTAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (27 bp):
TTTTAATAAGCACTTTTCAACAACACT
Found at i:26636115 original size:19 final size:20
Alignment explanation
Indices: 26636078--26636116 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26636068 GTTAAAAGGC
26636078 TTTTTTGATGCATTTTATAA
1 TTTTTTGATGCATTTTATAA
26636098 TTTTTT-ATG-ATTTATATAA
1 TTTTTTGATGCATTT-TATAA
26636117 AAATTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (20 bp):
TTTTTTGATGCATTTTATAA
Found at i:26636148 original size:20 final size:19
Alignment explanation
Indices: 26636116--26636154 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
26636106 GATTTATATA
26636116 AAAATTTACAATTTTTATT
1 AAAATTTACAATTTTTATT
*
26636135 AAAATTTAATAATTTTTATT
1 AAAATTT-ACAATTTTTATT
26636155 CTTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
AAAATTTACAATTTTTATT
Found at i:26637050 original size:4 final size:4
Alignment explanation
Indices: 26637043--26637069 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26637033 ATTTTTTTTT
26637043 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
26637070 ATGATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:26652921 original size:24 final size:23
Alignment explanation
Indices: 26652894--26652980 Score: 79
Period size: 24 Copynumber: 3.8 Consensus size: 23
26652884 GAGGGTGGTG
* *
26652894 AAGGTGGTGAGGTTGTTGGTAATA
1 AAGGTGGTGAGGGTGTTGG-AGTA
* *
26652918 AAGGTGGTGAGGGTG-AGG-GTG
1 AAGGTGGTGAGGGTGTTGGAGTA
* * *
26652939 AGGGTGGTGAGGTTGCTGGCAGTA
1 AAGGTGGTGAGGGTGTTGG-AGTA
26652963 AAGGTGGTGAGGGTGTTG
1 AAGGTGGTGAGGGTGTTG
26652981 AGGATCAGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
21 14 0.29
22 2 0.04
23 2 0.04
24 31 0.63
ACGTcount: A:0.20, C:0.02, G:0.52, T:0.26
Consensus pattern (23 bp):
AAGGTGGTGAGGGTGTTGGAGTA
Found at i:26652965 original size:45 final size:43
Alignment explanation
Indices: 26652879--26652977 Score: 137
Period size: 45 Copynumber: 2.3 Consensus size: 43
26652869 GGTAATGAAA
* *
26652879 GTGGTGAGGGT-GGTGAAGGTGGTGAGGTTGTTGGTAATAAAG
1 GTGGTGAGGGTGGGTGAAGGTGGTGAGGTTGCTGGCAATAAAG
* *
26652921 GTGGTGAGGGTGAGGGTGAGGGTGGTGAGGTTGCTGGCAGTAAAG
1 GTGGTGAGGGT--GGGTGAAGGTGGTGAGGTTGCTGGCAATAAAG
26652966 GTGGTGAGGGTG
1 GTGGTGAGGGTG
26652978 TTGAGGATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 11 0.22
43 1 0.02
45 38 0.76
ACGTcount: A:0.18, C:0.02, G:0.55, T:0.25
Consensus pattern (43 bp):
GTGGTGAGGGTGGGTGAAGGTGGTGAGGTTGCTGGCAATAAAG
Found at i:26654602 original size:21 final size:21
Alignment explanation
Indices: 26654562--26654612 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
26654552 ATTTATAACA
* *
26654562 TATTCAATTCTCATCTCTTGC
1 TATTCAAATCTCATCACTTGC
26654583 TATTTCAAATCTCAT-ACTTGC
1 TA-TTCAAATCTCATCACTTGC
26654604 TATTCAAAT
1 TATTCAAAT
26654613 AGCTTTTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 11 0.41
ACGTcount: A:0.27, C:0.24, G:0.04, T:0.45
Consensus pattern (21 bp):
TATTCAAATCTCATCACTTGC
Found at i:26654858 original size:41 final size:38
Alignment explanation
Indices: 26654733--26654865 Score: 108
Period size: 40 Copynumber: 3.4 Consensus size: 38
26654723 CCAGTTTGGT
* **
26654733 ACCCAGTACCTCATCGGATAATTTGAAGTAATAATTTGAC
1 ACCCAGTGCCTCATC-GATAATCCGAAGTAATAA-TTGAC
** * * * *
26654773 GTCCAGTGTCTCATCGGCTAAACCGAAGT-A-AATTGGC
1 ACCCAGTGCCTCATC-GATAATCCGAAGTAATAATTGAC
26654810 ACCCAGTGCCTCATCGAATTAATCCGAAGTAATAGATTGAC
1 ACCCAGTGCCTCATCG-A-TAATCCGAAGTAATA-ATTGAC
*
26654851 ACCCAGTGTCTCATC
1 ACCCAGTGCCTCATC
26654866 AACTCGAAGT
Statistics
Matches: 72, Mismatches: 16, Indels: 9
0.74 0.16 0.09
Matches are distributed among these distances:
36 1 0.01
37 16 0.22
38 12 0.17
39 2 0.03
40 22 0.31
41 19 0.26
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (38 bp):
ACCCAGTGCCTCATCGATAATCCGAAGTAATAATTGAC
Found at i:26655770 original size:4 final size:4
Alignment explanation
Indices: 26655761--26655795 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
26655751 CCTAGTTTCA
26655761 TCTT TCTT TCTT TCTTT TCTT TCTT TCCTT TCTT T
1 TCTT TCTT TCTT TC-TT TCTT TCTT T-CTT TCTT T
26655796 TCTCCCTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:26655781 original size:9 final size:9
Alignment explanation
Indices: 26655761--26655798 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
26655751 CCTAGTTTCA
26655761 TCTTTC-TT
1 TCTTTCTTT
26655769 TCTTTCTTT
1 TCTTTCTTT
26655778 TCTTTCTTT
1 TCTTTCTTT
*
26655787 CCTTTCTTT
1 TCTTTCTTT
26655796 TCT
1 TCT
26655799 CCCTATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (9 bp):
TCTTTCTTT
Found at i:26655853 original size:14 final size:14
Alignment explanation
Indices: 26655834--26655879 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
26655824 TTCTTTTCTT
26655834 TATTTATTTTATTA
1 TATTTATTTTATTA
*
26655848 TATTTACTTTATTA
1 TATTTATTTTATTA
* *
26655862 T-TATATTATA-TA
1 TATTTATTTTATTA
26655874 TATTTA
1 TATTTA
26655880 CTTAAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
12 3 0.12
13 9 0.35
14 14 0.54
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTTATTTTATTA
Found at i:26655889 original size:26 final size:25
Alignment explanation
Indices: 26655837--26655890 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
26655827 TTTTCTTTAT
* * *
26655837 TTATTTTATTATATTTACTTTATTA
1 TTATATTATTATATTTACTTAAATA
26655862 TTATATTATATATATTTACTTAAATA
1 TTATATTAT-TATATTTACTTAAATA
26655888 TTA
1 TTA
26655891 AGTAATACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATATTATTATATTTACTTAAATA
Found at i:26655902 original size:26 final size:26
Alignment explanation
Indices: 26655847--26655904 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
26655837 TTATTTTATT
* * * *
26655847 ATATTTACTTTATTATTATATTATAT
1 ATATTTACTTAAATATTATATAATAC
26655873 ATATTTACTTAAATATTA-AGTAATAC
1 ATATTTACTTAAATATTATA-TAATAC
26655899 ATATTT
1 ATATTT
26655905 TATTAATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATTTACTTAAATATTATATAATAC
Found at i:26657901 original size:159 final size:158
Alignment explanation
Indices: 26657570--26658028 Score: 568
Period size: 159 Copynumber: 2.9 Consensus size: 158
26657560 AACAAAGGAT
* * * *
26657570 CATGCATTCAACCTAACACAACAGGAGCACAGGTATATCGTAAACACTTTTTCATTGTCAATTCC
1 CATGCATTCAGCCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTT-AATGTCAATTCC
* * *
26657635 AAAATATTAAAATCTAATTT-GGGTTCTAATTTTTTTGGTCTTAGTCTGGTACTAGTACGAGAAC
65 AAAATATTTAAATCTAATTTGGGGTTCTGATTTTTTTGGTCTTAGTCTGGTACGAGTACGAGAAC
* * *
26657699 TAGAAACCCAAAAAATAACAACATAACAC
130 TAGAAACCAAAAAAAGAACAACAGAACAC
* * * **
26657728 CATGCATTAAGCCTAATACAACTGGATCACAGGTATATCGTATACACTATTTTAATGTCAATTTA
1 CATGCATTCAGCCTAACACAACTGGATCACAGGTATATCGTAAACACT-TTTTAATGTCAATTCC
* * * *
26657793 AAAATATTTTAATCTAATTTGGGGTTTTGATTTTTTTGGTGTTAGTCTGGTACGAGTA-TACGAA
65 AAAATATTTAAATCTAATTTGGGGTTCTGATTTTTTTGGTCTTAGTCTGGTACGAGTACGA-GAA
**
26657857 CTAGAAGTCAAAAAAAGAACAACAGAACAC
129 CTAGAAACCAAAAAAAGAACAACAGAACAC
* *
26657887 CATGCATTCAGCCTAACACAACTGGATCGCAGGTATATCGTAAACATTTTTTTAATGTCAATTCC
1 CATGCATTCAGCCTAACACAACTGGATCACAGGTATATCGTAAACA-CTTTTTAATGTCAATTCC
* * * * *
26657952 AAATTATTTAAATCTAATTTGGGGTTCTGA--CTTTTGTTCTCT-GTCTGGTACAAGTATGAGAA
65 AAAATATTTAAATCTAATTTGGGGTTCTGATTTTTTTGGTCT-TAGTCTGGTACGAGTACGAGAA
* *
26658014 CTACAAGCCAAAAAA
129 CTAGAAACCAAAAAA
26658029 GGATGGCATA
Statistics
Matches: 257, Mismatches: 38, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
157 36 0.14
158 72 0.28
159 148 0.58
160 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (158 bp):
CATGCATTCAGCCTAACACAACTGGATCACAGGTATATCGTAAACACTTTTTAATGTCAATTCCA
AAATATTTAAATCTAATTTGGGGTTCTGATTTTTTTGGTCTTAGTCTGGTACGAGTACGAGAACT
AGAAACCAAAAAAAGAACAACAGAACAC
Found at i:26658244 original size:82 final size:82
Alignment explanation
Indices: 26658105--26658307 Score: 318
Period size: 82 Copynumber: 2.5 Consensus size: 82
26658095 TAAAGATGGT
* * ** *
26658105 TAACATGTTTTGTTTG-TTTTTGAAATGATTTGTTGAAATGGTTGGTTAACATTTTACTACTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTATTGAAATGGTTGGTTAACAACTTACTACCATA
26658169 GGATCATTTTGTTAGCA
66 GGATCATTTTGTTAGCA
26658186 TAACATATTTTGTTTGTTTTTTGAAATGATTTATTGAAATGGTTGGTTAACAACTTACTACCATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTATTGAAATGGTTGGTTAACAACTTACTACCATA
* *
26658251 TGATCATTTTGTTAGTA
66 GGATCATTTTGTTAGCA
*
26658268 TAACATATTTTGTTTGGTTTTTTGAAATGATTTTTTGAAA
1 TAACATATTTTGTTT-GTTTTTTGAAATGATTTATTGAAA
26658308 GATGTATACT
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
81 15 0.13
82 74 0.66
83 23 0.21
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTGAAATGATTTATTGAAATGGTTGGTTAACAACTTACTACCATA
GGATCATTTTGTTAGCA
Found at i:26660251 original size:16 final size:17
Alignment explanation
Indices: 26660230--26660269 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
26660220 TTAGTTAGGG
26660230 ATTTTAATT-TTTTTTA
1 ATTTTAATTATTTTTTA
26660246 ATTTTAATTATTTTTTA
1 ATTTTAATTATTTTTTA
*
26660263 AGTTTAA
1 ATTTTAA
26660270 ATTCATTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTAATTATTTTTTA
Found at i:26660272 original size:18 final size:17
Alignment explanation
Indices: 26660230--26660277 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
26660220 TTAGTTAGGG
*
26660230 ATTTTAATT-TTTTTTA
1 ATTTAAATTATTTTTTA
*
26660246 ATTTTAATTATTTTTTA
1 ATTTAAATTATTTTTTA
26660263 AGTTTAAATTCATTT
1 A-TTTAAATT-ATTT
26660278 GCTGACGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 9 0.32
17 8 0.29
18 7 0.25
19 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
ATTTAAATTATTTTTTA
Found at i:26664423 original size:30 final size:30
Alignment explanation
Indices: 26664384--26664440 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
26664374 TTTTATAAAT
26664384 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
26664414 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
26664441 AACAAGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:26664627 original size:13 final size:13
Alignment explanation
Indices: 26664611--26664663 Score: 70
Period size: 13 Copynumber: 4.1 Consensus size: 13
26664601 TTTAAACCAA
*
26664611 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
26664624 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
26664637 ACTTTTCTATAGC
1 ACTTTTCAAAAGC
26664650 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26664663 A
1 A
26664664 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26672929 original size:43 final size:42
Alignment explanation
Indices: 26672833--26672968 Score: 175
Period size: 42 Copynumber: 3.2 Consensus size: 42
26672823 TGCTTCCACA
*
26672833 TTGCTTCCTTTTTTGTCTAAACCTT-GAGGTTGCTTTCCCAAG
1 TTGCTTCCTTTTTTGTCTAAA-CTTGGATGTTGCTTTCCCAAG
* * *
26672875 TTGCCTCTTTTTTTGTCTGAACTTGGATGTTGCTTTCCCAAG
1 TTGCTTCCTTTTTTGTCTAAACTTGGATGTTGCTTTCCCAAG
* * * * *
26672917 TTGCTTCCTTTTTTGTTTAGACATGGATGTTGCTTTTCCACG
1 TTGCTTCCTTTTTTGTCTAAACTTGGATGTTGCTTTCCCAAG
26672959 TTGCTTCCTT
1 TTGCTTCCTT
26672969 GATATTTTTC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 3 0.04
42 78 0.96
ACGTcount: A:0.12, C:0.22, G:0.18, T:0.49
Consensus pattern (42 bp):
TTGCTTCCTTTTTTGTCTAAACTTGGATGTTGCTTTCCCAAG
Found at i:26676021 original size:9 final size:9
Alignment explanation
Indices: 26676007--26676037 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26675997 TTTTGTTAAA
26676007 AATTAACCG
1 AATTAACCG
26676016 AATTAACCG
1 AATTAACCG
*
26676025 AATTACCCG
1 AATTAACCG
26676034 AATT
1 AATT
26676038 GAATCACTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:26676104 original size:17 final size:17
Alignment explanation
Indices: 26676045--26676107 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
26676035 ATTGAATCAC
*
26676045 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
26676062 TACATAAGGCTTTGAATCAC
1 TACATAA---TTAAAAACAT
26676082 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
26676099 TACATAATT
1 TACATAATT
26676108 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 22 0.65
20 12 0.35
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:26676283 original size:38 final size:39
Alignment explanation
Indices: 26676239--26676331 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 39
26676229 ACTTAAGAGT
* *
26676239 TAGACTTTAGTTTTATTTTTATTGGGTTG-GTAATTTGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGG
26676277 TAGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGG
26676316 TAGACTTTAGTTTTAG
1 TAGACTTTAGTTTTAG
26676332 GGCCAGTTCT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 28 0.54
39 24 0.46
ACGTcount: A:0.20, C:0.03, G:0.25, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGG
Found at i:26678494 original size:72 final size:72
Alignment explanation
Indices: 26678369--26678535 Score: 248
Period size: 72 Copynumber: 2.3 Consensus size: 72
26678359 AAAATCATAT
* * *
26678369 ATAAACAACTATTGATAAAACTA-ATTTAATAAAAATAAGTAGAACATAAATTCAATATCTAAAG
1 ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
*
26678433 ACCAAAC
66 ACAAAAC
* *
26678440 ATAAACAACTATTAATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTTA-ACAAAAATAAGTAGAACATAAATTCAATATCCAAA
26678504 AACAAAAC
65 AACAAAAC
*
26678512 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
26678536 TTAGCATTGT
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 25 0.29
72 61 0.71
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACAAAAC
Found at i:26678989 original size:18 final size:18
Alignment explanation
Indices: 26678966--26679031 Score: 105
Period size: 18 Copynumber: 3.7 Consensus size: 18
26678956 TTCATCAATT
*
26678966 TGAACATCATTTGAGATG
1 TGAACATCATTTGAAATG
26678984 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
26679002 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
*
26679020 TGAACATTATTT
1 TGAACATCATTT
26679032 CTCATATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:26681100 original size:14 final size:14
Alignment explanation
Indices: 26681065--26681108 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
26681055 GAACACCAGC
* *
26681065 ACCAGCAAAAAAGA
1 ACCAGCAGAGAAGA
26681079 ACCAGCAGAGAAGA
1 ACCAGCAGAGAAGA
26681093 ACCAGCAGAGAAGA
1 ACCAGCAGAGAAGA
26681107 AC
1 AC
26681109 AAATGTGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.55, C:0.23, G:0.23, T:0.00
Consensus pattern (14 bp):
ACCAGCAGAGAAGA
Found at i:26681374 original size:18 final size:17
Alignment explanation
Indices: 26681324--26681357 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
26681314 GTTTAGTTTT
26681324 ATTGGGTTGGGTAATTGG
1 ATTGGGTT-GGTAATTGG
26681342 ATTGGGTTGGTAATTG
1 ATTGGGTTGGTAATTG
26681358 AGTTTGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (17 bp):
ATTGGGTTGGTAATTGG
Found at i:26681429 original size:12 final size:13
Alignment explanation
Indices: 26681412--26681443 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
26681402 AATAATTGGG
26681412 TTGGGTT-GGTAA
1 TTGGGTTGGGTAA
26681424 TTGGGTTGGGTAA
1 TTGGGTTGGGTAA
26681437 TTGGGTT
1 TTGGGTT
26681444 TGGTTGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (13 bp):
TTGGGTTGGGTAA
Found at i:26683877 original size:4 final size:5
Alignment explanation
Indices: 26683838--26683874 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
26683828 ATAAAAATTA
*
26683838 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG -AAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
26683875 GAAGCCCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:26699594 original size:45 final size:43
Alignment explanation
Indices: 26699543--26699695 Score: 148
Period size: 44 Copynumber: 3.5 Consensus size: 43
26699533 GCTTACATCC
* *
26699543 GTTCCACTGCAATTTCAAGGAAATAAGACTTGCTATCTTCAGTCT
1 GTTCCACTGCAACTTCAAGGAAATAAGACTTG-TAT-TTCAATCT
* * *
26699588 GTTCCACTGCAATTTC-AGGAAGATAAGACTCGTAATTTCAACCT
1 GTTCCACTGCAACTTCAAGGAA-ATAAGACTTGT-ATTTCAATCT
* **
26699632 GCTT-CACTGCAACTTCAAGGAGATAAGGTTTGTATATTCAATCT
1 G-TTCCACTGCAACTTCAAGGAAATAAGACTTGTAT-TTCAATCT
**
26699676 GCCCCACTGCAACTTCAAGG
1 GTTCCACTGCAACTTCAAGG
26699696 GGATAAGGTT
Statistics
Matches: 91, Mismatches: 11, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.02
44 56 0.62
45 33 0.36
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (43 bp):
GTTCCACTGCAACTTCAAGGAAATAAGACTTGTATTTCAATCT
Found at i:26699803 original size:45 final size:45
Alignment explanation
Indices: 26699545--26699986 Score: 242
Period size: 45 Copynumber: 9.7 Consensus size: 45
26699535 TTACATCCGT
* * * **
26699545 TCCACTGCAATTTCAAGGAAATAAGACTTGCTATCTTCAGTCTGT
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAGTCTAC
* * * ** *
26699590 TCCACTGCAATTTC-AGGAAGATAAGACTCGTAAT-TTCAACCTGC
1 TCCACTGCAACTTCAAGG-AGATAAGACTTGTTATCTTCAGTCTAC
* ** * * *
26699634 TTCACTGCAACTTCAAGGAGATAAGGTTTG-TATATTCAATCTGC
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAGTCTAC
* * ** * *
26699678 CCCACTGCAACTTCAAGGGGATAAGGTTTGTTA-CTTCAACCTGCTTTGC
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTC-A---G-TCTAC
* * * *
26699727 TGCGAC-GTAACTTC-A-GAGGTAAGATTTGTTATCTTCAGTCTAC
1 T-CCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAGTCTAC
* * ** *
26699770 TCCATTGCAACTTCAAGGAGATAAGACTCGTTATGGT-AGATTTAATTC
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAG-TCT-A--C
* * * * * *
26699818 AACCTACTGCAACTTC--GGAGGTATAAGAATAG-TAGCTTCAATCTGC
1 -TCC-ACTGCAACTTCAAGGA-G-ATAAGACTTGTTATCTTCAGTCTAC
* * **
26699864 TCCACTGCAACTTCAGGGAGATAGGA-TTGGTTATCTTCAACCTAC
1 TCCACTGCAACTTCAAGGAGATAAGACTT-GTTATCTTCAGTCTAC
* * *
26699909 TCCACTGCAACTTCAAGAAGATAAGATTTGTTATCTTCAGTCTGC
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAGTCTAC
*
26699954 TCCACTGCAACTTTAAGGAGATAAGACTTGTTA
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTTA
26699987 CGGTGTGATC
Statistics
Matches: 307, Mismatches: 62, Indels: 56
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.01
43 14 0.05
44 91 0.30
45 129 0.42
46 7 0.02
47 14 0.05
48 9 0.03
49 19 0.06
50 22 0.07
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAAGGAGATAAGACTTGTTATCTTCAGTCTAC
Found at i:26700246 original size:44 final size:42
Alignment explanation
Indices: 26700146--26700733 Score: 334
Period size: 44 Copynumber: 13.7 Consensus size: 42
26700136 GTCTGATGCG
* * * **
26700146 ATCTGCTCTATTGCAACTTCAGAGAGATAAGATCCATCATTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT---TGGTTTTCA
* * * * *
26700190 ATCCGCTTCACTGTAACTTCAGGAAGATAGGATTGGTTTCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TT-TTCA
* * * * *
26700234 ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTGG-ATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTCA
* * *
26700275 ATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTTCA
* * * *
26700319 ATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TT-TTCA
* * * * *
26700363 ATCTGCTCCACTGCAACTTCAGGGAGATAA-ACTAGATGT-G
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTCA
* * *
26700403 ATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGGTTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTTCA
* * * *
26700447 ATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGGCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TT-TTCA
* * ** *
26700491 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-GAATGCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTCA
* * * *
26700532 ATCTGCTCTACTGTAACTTTAGAGAGATAAGATTTGTGGTTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTTCA
* * * * *
26700576 ATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGCTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TT-TTCA
* * * * *** *
26700620 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAG-AAGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTCA
* * **
26700661 ATCTGCTCTACTGCAACTTTAGAAAGAT-AGCATCTGTGGTTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAG-A--T-TGGTTTTCA
*
26700705 ATCCGCTCCACTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
26700734 GGACTGGTGT
Statistics
Matches: 410, Mismatches: 104, Indels: 59
0.72 0.18 0.10
Matches are distributed among these distances:
40 29 0.07
41 96 0.23
42 12 0.03
43 13 0.03
44 257 0.63
45 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTCA
Found at i:26700299 original size:129 final size:129
Alignment explanation
Indices: 26700140--26700736 Score: 858
Period size: 129 Copynumber: 4.6 Consensus size: 129
26700130 AATAAAGTCT
* ** ** * *
26700140 GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTTCACTGTA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
* * * * * * *
26700205 ACTTCAGGAAGATAGGATTGGTTTCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTG
66 ACTTCAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* *
26700269 GATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTTAATCCGCTCCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
*
26700334 ACTTTAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAA-ACTA
66 ACTTCAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * *
26700397 GATGTGATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
* *
26700462 ACTTCAGGAAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-
66 ACTTCAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * * * *
26700525 GAATGCAATCTGCTCTACTGTAACTTTAGAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGT
1 G-ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
* * *
26700590 AACTTTAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTA
65 AACTTCAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * *
26700655 GAAGCGATCTGCTCTACTGCAACTTTAGAAAGAT-AGCATCTGTGGTTTTAATCCGCTCCACTGC
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAG-ATCTGTGGTTTTAATCCGCTCCACTGC
26700719 AACTTCAGGGAGATAGGA
65 AACTTCAGGGAGATAGGA
26700737 CTGGTGTTTT
Statistics
Matches: 424, Mismatches: 40, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
128 121 0.29
129 302 0.71
130 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
ACTTCAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:26700601 original size:257 final size:258
Alignment explanation
Indices: 26700140--26700736 Score: 910
Period size: 257 Copynumber: 2.3 Consensus size: 258
26700130 AATAAAGTCT
** ** * *
26700140 GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTTCACTGTA
1 GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
* * * * *
26700205 ACTTCAGGAAGATAGGATTGGTTTCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTGG
66 ACTTCAGGAAGATAGGATTGGCTTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
* *
26700270 ATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTTAATCCGCTCCACTGCAA
131 ATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTTAATCCGCTCCACTGCAA
26700335 CTTTAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAA-ACTA
196 CTTTAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* *
26700397 GATGTGATCTGCTCTATTGCAACTTCAGAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGCA
1 GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
**
26700462 ACTTCAGGAAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
66 ACTTCAGGAAGATAGGATTGGCTTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
* * * * *
26700527 ATGCAATCTGCTCTACTGTAACTTTAGAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGTAA
131 ATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTTAATCCGCTCCACTGCAA
* *
26700592 CTTTAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTA
196 CTTTAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * * *
26700655 GAAGCGATCTGCTCTACTGCAACTTTAGAAAGAT-AGCATCTGTGGTTTTAATCCGCTCCACTGC
1 GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAG-ATCTGTGGTTTTAATCCGCTCCACTGC
*
26700719 AACTTCAGGGAGATAGGA
65 AACTTCAGGAAGATAGGA
26700737 CTGGTGTTTT
Statistics
Matches: 307, Mismatches: 31, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
257 231 0.75
258 76 0.25
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (258 bp):
GATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCA
ACTTCAGGAAGATAGGATTGGCTTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
ATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTCTGGTTTTAATCCGCTCCACTGCAA
CTTTAGGGAGATAGGATTGGCTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:26701176 original size:24 final size:23
Alignment explanation
Indices: 26701144--26701200 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
26701134 CAGATTGCCC
26701144 CCACTGTAATCTTCAAGGTCCAAT
1 CCACTGTAAT-TTCAAGGTCCAAT
* * *
26701168 CCACTGTAA-TTCTATGTTCAAT
1 CCACTGTAATTTCAAGGTCCAAT
26701190 CCACTGTAATT
1 CCACTGTAATT
26701201 CTTAGACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 19 0.66
23 1 0.03
24 9 0.31
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (23 bp):
CCACTGTAATTTCAAGGTCCAAT
Found at i:26701918 original size:18 final size:18
Alignment explanation
Indices: 26701895--26701930 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26701885 CCTTTCTAAG
26701895 TTTGACATGTGTTTAGGA
1 TTTGACATGTGTTTAGGA
26701913 TTTGACATGTGTTTAGGA
1 TTTGACATGTGTTTAGGA
26701931 GATCTACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (18 bp):
TTTGACATGTGTTTAGGA
Found at i:26702168 original size:13 final size:12
Alignment explanation
Indices: 26702152--26702210 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 12
26702142 TTGGCCTCTC
26702152 TTTTTTCTTTTT
1 TTTTTTCTTTTT
26702164 CTTTTCTTCTTCTTT
1 -TTTT-TTCTT-TTT
26702179 TTTTTTCTTTTT
1 TTTTTTCTTTTT
26702191 TTTTTCTCTTTTT
1 TTTTT-TCTTTTT
26702204 TTATTTT
1 TT-TTTT
26702211 TTTAAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
12 8 0.19
13 19 0.45
14 12 0.29
15 3 0.07
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:26702170 original size:11 final size:10
Alignment explanation
Indices: 26702154--26702213 Score: 66
Period size: 11 Copynumber: 5.7 Consensus size: 10
26702144 GGCCTCTCTT
26702154 TTTTCTTTTTC
1 TTTT-TTTTTC
*
26702165 TTTTCTTCTTC
1 TTTT-TTTTTC
26702176 TTTTTTTTTC
1 TTTTTTTTTC
26702186 TTTTTTTTTTC
1 -TTTTTTTTTC
* *
26702197 TCTTTTTTTA
1 TTTTTTTTTC
26702207 TTTTTTT
1 TTTTTTT
26702214 AAATATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
10 19 0.44
11 24 0.56
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:26702183 original size:21 final size:21
Alignment explanation
Indices: 26702150--26702210 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26702140 CATTGGCCTC
26702150 TCTT-TTTTCTTTTTCTTTTCT
1 TCTTCTTTT-TTTTTCTTTTCT
*
26702171 TCTTCTTTTTTTTTCTTTTTT
1 TCTTCTTTTTTTTTCTTTTCT
* * *
26702192 TTTTCTCTTTTTTTATTTT
1 TCTTCTTTTTTTTTCTTTT
26702211 TTTAAATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 31 0.89
22 4 0.11
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (21 bp):
TCTTCTTTTTTTTTCTTTTCT
Found at i:26702190 original size:27 final size:26
Alignment explanation
Indices: 26702152--26702211 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
26702142 TTGGCCTCTC
26702152 TTTTTTCTTTTTCTTTTCTTCTTCTTT
1 TTTTTTCTTTTTCTTTTC-TCTTCTTT
* *
26702179 TTTTTTCTTTTTTTTTTCTCTTTTTT
1 TTTTTTCTTTTTCTTTTCTCTTCTTT
26702205 TATTTTT
1 T-TTTTT
26702212 TTAAATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (26 bp):
TTTTTTCTTTTTCTTTTCTCTTCTTT
Found at i:26702211 original size:21 final size:21
Alignment explanation
Indices: 26702159--26702213 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
26702149 CTCTTTTTTC
* *
26702159 TTTTTCTTTTCTTCTTCTTTT
1 TTTTTCTTTTTTTCTTCTCTT
*
26702180 TTTTTCTTTTTTTTTTCTCTT
1 TTTTTCTTTTTTTCTTCTCTT
*
26702201 TTTTTATTTTTTT
1 TTTTTCTTTTTTT
26702214 AAATATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTCTTTTTTTCTTCTCTT
Found at i:26706107 original size:107 final size:106
Alignment explanation
Indices: 26705930--26706124 Score: 302
Period size: 107 Copynumber: 1.8 Consensus size: 106
26705920 GATTTAAGAG
* * * * * *
26705930 GATATTTGGCTATTTGGTCATACGAGAAGTCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
1 GATATTTGACTATTTGGTCATACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCAAAT
26705995 TTCCAAACGCAAAATATTGTCTTATTTTGAAATTTTAAAAA
66 TTCCAAACGCAAAATATTGTCTTATTTTGAAATTTTAAAAA
26706036 GATATTTGACTATTTGGTCGA-ACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCAA
1 GATATTTGACTATTTGGTC-ATACG-AAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCAA
*
26706100 ATTTCCAAATGCAAAATATTGTCTT
64 ATTTCCAAACGCAAAATATTGTCTT
26706125 TATTATTTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
106 21 0.26
107 59 0.74
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (106 bp):
GATATTTGACTATTTGGTCATACGAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCAAAT
TTCCAAACGCAAAATATTGTCTTATTTTGAAATTTTAAAAA
Found at i:26706356 original size:73 final size:73
Alignment explanation
Indices: 26706269--26706404 Score: 245
Period size: 73 Copynumber: 1.9 Consensus size: 73
26706259 TCAGGTTTAG
* *
26706269 AAAATGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAAAT
1 AAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAAAT
26706334 TTGAGGAA
66 TTGAGGAA
*
26706342 AAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTTCCGAGATCGTTTAAAA
1 AAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
26706405 CTTGAATTTG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (73 bp):
AAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAAAT
TTGAGGAA
Found at i:26706849 original size:47 final size:47
Alignment explanation
Indices: 26706757--26706849 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
26706747 GAAAATGAAT
* *
26706757 AAAATTATAGAAATATAAAAAGATATATATGAATATATATGTATATA
1 AAAATTATAGAAATATAAAAAAATATATATGAATATATATATATATA
*
26706804 AAAATTATA-AAATATAAAAAAAATATATAT-AAGTATGTATATATAT
1 AAAATTATAGAAATAT-AAAAAAATATATATGAA-TATATATATATAT
26706850 TCGTGAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
46 8 0.20
47 33 0.80
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (47 bp):
AAAATTATAGAAATATAAAAAAATATATATGAATATATATATATATA
Found at i:26707953 original size:20 final size:20
Alignment explanation
Indices: 26707928--26707969 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26707918 AAATCCCAAA
26707928 TTGCTACTTTTGATTTTGTC
1 TTGCTACTTTTGATTTTGTC
26707948 TTGCTACTTTTGATTTTGTC
1 TTGCTACTTTTGATTTTGTC
26707968 TT
1 TT
26707970 TCTTTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (20 bp):
TTGCTACTTTTGATTTTGTC
Found at i:26710591 original size:3 final size:3
Alignment explanation
Indices: 26710583--26710620 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
26710573 GCAAATTTGT
26710583 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26710621 TCATGTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26711073 original size:48 final size:47
Alignment explanation
Indices: 26711012--26711122 Score: 138
Period size: 45 Copynumber: 2.4 Consensus size: 47
26711002 TATTATAAAA
26711012 TCAAATAATTATTTCAAACACAAAT-ATTATTTTTATATGTAAAATATT
1 TCAAATAATTATTTCAAA-A-AAATCATTATTTTTATATGTAAAATATT
* * * * *
26711060 TTAAATAACTATTTC--AAATATCATTATTTTTATATGTGAAGTATT
1 TCAAATAATTATTTCAAAAAAATCATTATTTTTATATGTAAAATATT
26711105 TCAAATAATTATTTCAAA
1 TCAAATAATTATTTCAAA
26711123 TACACATACA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
44 3 0.06
45 35 0.66
46 1 0.02
47 1 0.02
48 13 0.25
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (47 bp):
TCAAATAATTATTTCAAAAAAATCATTATTTTTATATGTAAAATATT
Found at i:26711096 original size:45 final size:45
Alignment explanation
Indices: 26711037--26711124 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
26711027 AAACACAAAT
*
26711037 ATTATTTTTATATGTAAAATATTTTAAATAACTATTTCAAATATC
1 ATTATTTTTATATGTAAAATATTTCAAATAACTATTTCAAATATC
* * *
26711082 ATTATTTTTATATGTGAAGTATTTCAAATAATTATTTCAAATA
1 ATTATTTTTATATGTAAAATATTTCAAATAACTATTTCAAATA
26711125 CACATACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.49
Consensus pattern (45 bp):
ATTATTTTTATATGTAAAATATTTCAAATAACTATTTCAAATATC
Found at i:26722964 original size:3 final size:3
Alignment explanation
Indices: 26722956--26722984 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26722946 ATAATTTTTT
26722956 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
26722985 AAAAAGGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26725716 original size:26 final size:26
Alignment explanation
Indices: 26725661--26725716 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
26725651 ATTACATTGG
* *
26725661 TAATCACTCAACTATAAATAATTTTT
1 TAATCACTCAACTATAAATAATTATA
* *
26725687 TAATTACTCAATTATGAAA-AATTATA
1 TAATCACTCAACTAT-AAATAATTATA
26725713 TAAT
1 TAAT
26725717 AGTTGCTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (26 bp):
TAATCACTCAACTATAAATAATTATA
Found at i:26731161 original size:22 final size:21
Alignment explanation
Indices: 26731121--26731167 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
26731111 ATCACGTATA
* *
26731121 AATCATGTTTAAATTTATTCT
1 AATCATGTCTAAATATATTCT
*
26731142 AATCATGATCTAAATATATTTT
1 AATCATG-TCTAAATATATTCT
26731164 AATC
1 AATC
26731168 TAGAGATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (21 bp):
AATCATGTCTAAATATATTCT
Found at i:26732833 original size:22 final size:22
Alignment explanation
Indices: 26732808--26732849 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
26732798 TTAATTGTCA
26732808 TTTTTATTATTT-TTATTCTTGT
1 TTTTTATTATTTATT-TTCTTGT
26732830 TTTTTATTATTTATTTTCTT
1 TTTTTATTATTTATTTTCTT
26732850 TAGTTTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTTTATTATTTATTTTCTTGT
Found at i:26734286 original size:18 final size:17
Alignment explanation
Indices: 26734263--26734304 Score: 61
Period size: 15 Copynumber: 2.5 Consensus size: 17
26734253 GGACCTCTCC
26734263 GAGCGGTTCACTCATTTT
1 GAGCGGTTCACT-ATTTT
26734281 GAGCGG--CACTATTTT
1 GAGCGGTTCACTATTTT
26734296 GAGCGGTTC
1 GAGCGGTTC
26734305 GACAGTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 11 0.50
16 4 0.18
17 1 0.05
18 6 0.27
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (17 bp):
GAGCGGTTCACTATTTT
Found at i:26734444 original size:6 final size:6
Alignment explanation
Indices: 26734410--26734484 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
26734400 AGATCATTGA
* * * * *
26734410 TTTTAT TTCTCT TTTT-T TTTCAA TTTTAT TTTTAT CTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
26734456 TTTTGT TTTTAGT TGTTTCAT TTTTAT TT
1 TTTTAT TTTTA-T T-TTT-AT TTTTAT TT
26734485 CTTAGACTTC
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
5 8 0.15
6 34 0.64
7 5 0.09
8 5 0.09
9 1 0.02
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:26743768 original size:37 final size:37
Alignment explanation
Indices: 26743717--26743864 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
26743707 TAGCTAGGCT
****
26743717 ACCACTTATCACTTTACCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
26743754 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26743791 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26743828 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26743865 GCTAAAACTA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:26751411 original size:37 final size:37
Alignment explanation
Indices: 26751360--26751507 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
26751350 TAGCTAGGCT
****
26751360 ACCACTTATCACTTTACCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
26751397 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26751434 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26751471 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
26751508 GCTAAAACTA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:26757737 original size:63 final size:63
Alignment explanation
Indices: 26757618--26757737 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
26757608 TGACAGGCCG
* * * * *
26757618 TGTAACTCATTGTTTTGAAATTTGAGTCACACGGGCTAGGGACACGGGCATCTGTCCGGGCTA
1 TGTAACTCACTGTCTTGAAATTTGAGTCACACAGGCCAGGGACACGGGCATATGTCCGGGCTA
* *
26757681 TGTAACTCACTGTCTTGGAATTAT-AGTCACACAGGCCAGGGACACGGGCGTATGTCC
1 TGTAACTCACTGTCTTGAAATT-TGAGTCACACAGGCCAGGGACACGGGCATATGTCC
26757738 AAGCTGTGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
63 48 0.98
64 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (63 bp):
TGTAACTCACTGTCTTGAAATTTGAGTCACACAGGCCAGGGACACGGGCATATGTCCGGGCTA
Found at i:26761495 original size:51 final size:51
Alignment explanation
Indices: 26761419--26761647 Score: 413
Period size: 51 Copynumber: 4.5 Consensus size: 51
26761409 AGTATTTCTA
* *
26761419 ATCAGTGTCAAGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
26761470 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
26761521 ATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
26761572 ATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
26761623 ATCAGGGACAAGTGACAAGTGATAA
1 ATCAGTGACAAGTGACAAGTGATAA
26761648 ATGTGATCCG
Statistics
Matches: 173, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 173 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (51 bp):
ATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
Found at i:26766153 original size:31 final size:29
Alignment explanation
Indices: 26766115--26766191 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
26766105 TTAACGGCTC
* *
26766115 AGTGACTAAAATGTTACATCATGATAACATA
1 AGTGACTAAAATGTAACAT-ATCA-AACATA
* *
26766146 AGTGACTAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACATATCAAACATA
*
26766175 AGTGACTAAAATATAAC
1 AGTGACTAAAATGTAAC
26766192 CTGAACCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 21 0.52
30 2 0.05
31 17 0.43
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (29 bp):
AGTGACTAAAATGTAACATATCAAACATA
Done.