Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 85 of 226
Found at i:26767662 original size:15 final size:15
Alignment explanation
Indices: 26767637--26767671 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
26767627 GACTCTATTT
*
26767637 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
26767651 TAATTAATATTAAGA
1 TAATTAATATTAAGA
26767666 TAATTA
1 TAATTA
26767672 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:26771636 original size:12 final size:11
Alignment explanation
Indices: 26771584--26771639 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
26771574 AGGCAACCCA
26771584 ATTTTTATTTT
1 ATTTTTATTTT
* *
26771595 TTTCTTTACTTT
1 ATT-TTTATTTT
*
26771607 ATTTATTACTTT
1 ATTT-TTATTTT
26771619 A-TTTTATTTT
1 ATTTTTATTTT
26771629 ATTATTTATTT
1 ATT-TTTATTT
26771640 GGATATTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
10 7 0.19
11 6 0.16
12 24 0.65
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:26771636 original size:17 final size:17
Alignment explanation
Indices: 26771586--26771639 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
26771576 GCAACCCAAT
* *
26771586 TTTTATTTTTTTCTTTA
1 TTTTATTTTATTATTTA
*
26771603 CTTTA-TTTATTACTTTA
1 TTTTATTTTATTA-TTTA
26771620 TTTTATTTTATTATTTA
1 TTTTATTTTATTATTTA
26771637 TTT
1 TTT
26771640 GGATATTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 5 0.16
17 19 0.61
18 7 0.23
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTATTATTTA
Found at i:26773277 original size:15 final size:15
Alignment explanation
Indices: 26773252--26773286 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
26773242 CAGACTATTT
*
26773252 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
26773266 TAATTAATATTAAGA
1 TAATTAATATTAAGA
26773281 TAATTA
1 TAATTA
26773287 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:26777127 original size:26 final size:25
Alignment explanation
Indices: 26777085--26777135 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
26777075 GGCCATGGGA
*
26777085 TTGTCTGTATGTGGGAGTTGGGATT
1 TTGTCTGTATGTGGGAGTGGGGATT
26777110 TTGTCATGTAATGT-GGAGTGGGGATT
1 TTGTC-TGT-ATGTGGGAGTGGGGATT
26777136 ATAAGCCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 14 0.61
27 4 0.17
ACGTcount: A:0.16, C:0.04, G:0.39, T:0.41
Consensus pattern (25 bp):
TTGTCTGTATGTGGGAGTGGGGATT
Found at i:26783450 original size:14 final size:14
Alignment explanation
Indices: 26783433--26783461 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26783423 TTTTTATTAC
26783433 ATTATCTTTCCTGG
1 ATTATCTTTCCTGG
26783447 ATTATCTTTCCTGG
1 ATTATCTTTCCTGG
26783461 A
1 A
26783462 CATATAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48
Consensus pattern (14 bp):
ATTATCTTTCCTGG
Found at i:26786628 original size:12 final size:12
Alignment explanation
Indices: 26786611--26786635 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26786601 TACTGATAAC
26786611 GTATTATAAAAT
1 GTATTATAAAAT
26786623 GTATTATAAAAT
1 GTATTATAAAAT
26786635 G
1 G
26786636 ATAATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (12 bp):
GTATTATAAAAT
Found at i:26786717 original size:36 final size:36
Alignment explanation
Indices: 26786641--26786717 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
26786631 AAATGATAAT
** *
26786641 AATAATAATGCAAAAAACACAAGAATGTTATAAAAT
1 AATAATAATGCAAAAAACACAAGAATAATATAAAAG
* * **
26786677 AATAATAATGCAAAGAACATAAGAATAATATATCAG
1 AATAATAATGCAAAAAACACAAGAATAATATAAAAG
26786713 AATAA
1 AATAA
26786718 AAAGGGATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.61, C:0.08, G:0.09, T:0.22
Consensus pattern (36 bp):
AATAATAATGCAAAAAACACAAGAATAATATAAAAG
Found at i:26788395 original size:13 final size:14
Alignment explanation
Indices: 26788371--26788399 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26788361 GATATCATAT
26788371 TAATTATTAATTTA
1 TAATTATTAATTTA
26788385 TAATT-TTAATTTA
1 TAATTATTAATTTA
26788398 TA
1 TA
26788400 TGTAATGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATTATTAATTTA
Found at i:26790372 original size:25 final size:26
Alignment explanation
Indices: 26790315--26790364 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
26790305 TAATTATATA
26790315 GTTTCTTTTAAAAAGAAAAAAAAAAC
1 GTTTCTTTTAAAAAGAAAAAAAAAAC
26790341 GTTTCTTTTAAAAAGAAAAAAAAA
1 GTTTCTTTTAAAAAGAAAAAAAAA
26790365 TTTGTCTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (26 bp):
GTTTCTTTTAAAAAGAAAAAAAAAAC
Found at i:26794384 original size:23 final size:19
Alignment explanation
Indices: 26794358--26794407 Score: 55
Period size: 23 Copynumber: 2.4 Consensus size: 19
26794348 GAAGTCTTAC
26794358 AAATAAAAATAAAGTACAACTGA
1 AAATAAAAATAAA-TA-AA--GA
*
26794381 AAATAATAATAAATAAAGA
1 AAATAAAAATAAATAAAGA
26794400 AAATAAAA
1 AAATAAAA
26794408 CGAAAACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 9 0.36
21 2 0.08
22 2 0.08
23 12 0.48
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (19 bp):
AAATAAAAATAAATAAAGA
Found at i:26795056 original size:13 final size:13
Alignment explanation
Indices: 26795031--26795120 Score: 51
Period size: 13 Copynumber: 6.5 Consensus size: 13
26795021 AACAAAACTA
26795031 AAATAAAGT-AAAT
1 AAATAAA-TAAAAT
26795044 AAATAAATAAAATT
1 AAATAAATAAAA-T
26795058 CAAA-ATAATAAAAAT
1 -AAATA-AAT-AAAAT
*
26795073 TAATATAATAATAA-
1 AAATA-AATAA-AAT
*
26795087 AAATAATATATAAT
1 AAATAA-ATAAAAT
* *
26795101 AAATATATATAAT
1 AAATAAATAAAAT
26795114 AAATAAA
1 AAATAAA
26795121 AGGAACAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
12 1 0.02
13 26 0.41
14 18 0.29
15 14 0.22
16 4 0.06
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:26795097 original size:19 final size:18
Alignment explanation
Indices: 26795061--26795121 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
26795051 TAAAATTCAA
*
26795061 AATAATAAAAATTAATAT
1 AATAATAAAAATAAATAT
26795079 AATAATAAAAAT-AATAT
1 AATAATAAAAATAAATAT
*
26795096 -ATAAT--AAATATATAT
1 AATAATAAAAATAAATAT
26795111 AATAAATAAAA
1 AAT-AATAAAA
26795122 GGAACAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
14 4 0.11
15 4 0.11
16 7 0.19
17 8 0.22
18 12 0.32
19 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAATAAAAATAAATAT
Found at i:26795119 original size:27 final size:27
Alignment explanation
Indices: 26795059--26795116 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
26795049 AATAAAATTC
*
26795059 AAAATAATAAAAATTAATATAATAATA
1 AAAATAATAAAAATAAATATAATAATA
*
26795086 AAAATAATATATAATAAATATATATAATA
1 AAAATAATA-AAAATAAATATA-ATAATA
26795115 AA
1 AA
26795117 TAAAAGGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 9 0.33
28 10 0.37
29 8 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (27 bp):
AAAATAATAAAAATAAATATAATAATA
Found at i:26795644 original size:13 final size:13
Alignment explanation
Indices: 26795637--26795666 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
26795627 GTAAAATAAT
26795637 AAAATAAAAGAAA
1 AAAATAAAAGAAA
26795650 AAAATAAAAGATAA
1 AAAATAAAAGA-AA
26795664 AAA
1 AAA
26795667 GAAAGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (13 bp):
AAAATAAAAGAAA
Found at i:26795653 original size:21 final size:21
Alignment explanation
Indices: 26795629--26795670 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26795619 AGAAGGAAGT
26795629 AAAATAATAAAAT-AAAAGAAA
1 AAAATAA-AAAATAAAAAGAAA
*
26795650 AAAATAAAAGATAAAAAGAAA
1 AAAATAAAAAATAAAAAGAAA
26795671 GAAACCCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (21 bp):
AAAATAAAAAATAAAAAGAAA
Found at i:26797707 original size:6 final size:6
Alignment explanation
Indices: 26797696--26797736 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
26797686 TGTAAAAATT
26797696 AAATAA AAATAA AAATAA AAATAA AAATATTA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATA--A AAATAA AAA
26797737 ATGGATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:26804780 original size:16 final size:17
Alignment explanation
Indices: 26804759--26804794 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
26804749 ACGAGAAAAT
*
26804759 TTTAATTATA-ATTTTC
1 TTTAATTATATAGTTTC
26804775 TTTAATTATATAGTTTC
1 TTTAATTATATAGTTTC
26804792 TTT
1 TTT
26804795 TAAAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTAATTATATAGTTTC
Found at i:26806291 original size:21 final size:23
Alignment explanation
Indices: 26806228--26806291 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 23
26806218 GGTAGGAAAA
26806228 TACATCTG-ATTCTGAT-CTGTTC
1 TACATCTGTATT-TGATACTGTTC
26806250 TACATCTGTATTTGATA-TGTTC
1 TACATCTGTATTTGATACTGTTC
26806272 TTA-ATCT-TATTTGA-ACTGTT
1 -TACATCTGTATTTGATACTGTT
26806292 ACAACATTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
20 1 0.03
21 11 0.29
22 21 0.55
23 5 0.13
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (23 bp):
TACATCTGTATTTGATACTGTTC
Found at i:26807752 original size:46 final size:46
Alignment explanation
Indices: 26807685--26807823 Score: 242
Period size: 46 Copynumber: 3.0 Consensus size: 46
26807675 AAATTGCTAT
*
26807685 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
*
26807731 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
* *
26807777 AACTCAGTATGGTTTTATTCACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
26807823 A
1 A
26807824 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
Found at i:26808616 original size:16 final size:17
Alignment explanation
Indices: 26808570--26808617 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
26808560 AAATTCTTTT
26808570 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
26808587 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
26808604 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
26808618 TTCTAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:26811342 original size:31 final size:29
Alignment explanation
Indices: 26811302--26811368 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 29
26811292 ACGTTTAATT
* *
26811302 AATTTTTTTTAAAATTTTAAAATATTATAAA
1 AATTATTTTTAAAAATTT-AAA-ATTATAAA
* *
26811333 AATTATTTTTAAAAATTTAGAATTATTAA
1 AATTATTTTTAAAAATTTAAAATTATAAA
26811362 AATTATT
1 AATTATT
26811369 AAAAAGGTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.44
30 2 0.06
31 16 0.50
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (29 bp):
AATTATTTTTAAAAATTTAAAATTATAAA
Found at i:26815778 original size:21 final size:21
Alignment explanation
Indices: 26815752--26815794 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26815742 TTTTTCCAAA
* *
26815752 AATGTGTATTGGATTGAATTG
1 AATGTGAATTGGATTAAATTG
*
26815773 AATGTGAATTGTATTAAATTG
1 AATGTGAATTGGATTAAATTG
26815794 A
1 A
26815795 GTTAAATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (21 bp):
AATGTGAATTGGATTAAATTG
Found at i:26816288 original size:25 final size:25
Alignment explanation
Indices: 26816132--26816353 Score: 107
Period size: 25 Copynumber: 8.9 Consensus size: 25
26816122 ACAGCTCTTA
* * *
26816132 TGAGCATCCCG-TTATATGGATCTCA
1 TGAGCTTCCCGATTA-ATGGCTCTCT
* *
26816157 CGAGCTTCCCAATTAATGGCTCTCT
1 TGAGCTTCCCGATTAATGGCTCTCT
* * *
26816182 TAAGCTTCCCG-TTTATGGCT-TGT
1 TGAGCTTCCCGATTAATGGCTCTCT
*
26816205 ATGAGCTTCCCGA-TAATTGGCTCTCC
1 -TGAGCTTCCCGATTAA-TGGCTCTCT
* * * * *
26816231 GGGGCTTCCCGATAAAAGACTCTCT
1 TGAGCTTCCCGATTAATGGCTCTCT
*
26816256 CATAAGCTTCCCGATTAATGGCTCTCT
1 --TGAGCTTCCCGATTAATGGCTCTCT
* * * * * * *
26816283 GGAGCTACGCGA-TATTAGCTCACA
1 TGAGCTTCCCGATTAATGGCTCTCT
* *
26816307 TGAGCTTCCCG-TTACATGGCTCACA
1 TGAGCTTCCCGATTA-ATGGCTCTCT
*
26816332 TGAGCTTCCTG-TTATATGGCTC
1 TGAGCTTCCCGATTA-ATGGCTC
26816354 GAAAGAGCTA
Statistics
Matches: 146, Mismatches: 41, Indels: 20
0.71 0.20 0.10
Matches are distributed among these distances:
23 2 0.01
24 38 0.26
25 81 0.55
26 6 0.04
27 19 0.13
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (25 bp):
TGAGCTTCCCGATTAATGGCTCTCT
Found at i:26816361 original size:25 final size:25
Alignment explanation
Indices: 26816300--26816362 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
26816290 CGCGATATTA
*
26816300 GCTCACATGAGCTTCCCGTTACATG
1 GCTCACAAGAGCTTCCCGTTACATG
* * *
26816325 GCTCACATGAGCTTCCTGTTATATG
1 GCTCACAAGAGCTTCCCGTTACATG
26816350 GCTCGA-AAGAGCT
1 GCTC-ACAAGAGCT
26816363 ATTCGTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (25 bp):
GCTCACAAGAGCTTCCCGTTACATG
Found at i:26816386 original size:25 final size:24
Alignment explanation
Indices: 26816300--26816386 Score: 72
Period size: 25 Copynumber: 3.5 Consensus size: 24
26816290 CGCGATATTA
*
26816300 GCTCACATGAGCTTCCCG-TTACATG
1 GCTCACATGAGCTT--CGTTTATATG
*
26816325 GCTCACATGAGCTTCCTGTTATATG
1 GCTCACATGAGCTTCGT-TTATATG
*
26816350 GCTCGA-AAGAGCTATTCGTTTATAT-
1 GCTC-ACATGAGC--TTCGTTTATATG
26816375 GCTCACATGAGC
1 GCTCACATGAGC
26816387 ATTCCTGAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 38 0.75
26 7 0.14
27 4 0.08
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (24 bp):
GCTCACATGAGCTTCGTTTATATG
Found at i:26822816 original size:29 final size:30
Alignment explanation
Indices: 26822770--26822831 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
26822760 ATTATTCATC
26822770 ATTGAAAAATTAAGAAAAGAAA-ATGATTAA
1 ATTGAAAAATTAAGAAAAGAAAGATGA-TAA
*
26822800 ATTGAAAAGA-TAA-AAAATAAAGATGATAA
1 ATTGAAAA-ATTAAGAAAAGAAAGATGATAA
26822829 ATT
1 ATT
26822832 AATTAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 13 0.45
30 15 0.52
31 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (30 bp):
ATTGAAAAATTAAGAAAAGAAAGATGATAA
Found at i:26823822 original size:25 final size:25
Alignment explanation
Indices: 26823780--26823827 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
26823770 CTCGTATGAG
*
26823780 CTTCCCGATAATTAGCTCTCTGAAA
1 CTTCCCGATAATAAGCTCTCTGAAA
26823805 CTTCCCGATAA-AAGGCTCTCTGA
1 CTTCCCGATAATAA-GCTCTCTGA
26823828 TGAGCTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (25 bp):
CTTCCCGATAATAAGCTCTCTGAAA
Found at i:26823895 original size:25 final size:25
Alignment explanation
Indices: 26823827--26823898 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
26823817 AGGCTCTCTG
* **
26823827 ATGAGCTTCCCG-AATATGGCTCTT
1 ATGAGCTTCCCGTTATATGGCTCAC
* **
26823851 ATGAGCTTCCCATTCCATGGCTCAC
1 ATGAGCTTCCCGTTATATGGCTCAC
*
26823876 ATGAGCTTCCTGTTATATGGCTC
1 ATGAGCTTCCCGTTATATGGCTC
26823899 GAAAGAGCTA
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
24 11 0.30
25 26 0.70
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCAC
Found at i:26823931 original size:25 final size:25
Alignment explanation
Indices: 26823870--26823931 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
26823860 CCATTCCATG
* *
26823870 GCTCACATGAGCTTCCTGTTATATG
1 GCTCACATGAGCTACCTGTTATATC
*
26823895 GCTCGA-AAGAGCTACCTGTT-TATAC
1 GCTC-ACATGAGCTACCTGTTATAT-C
26823920 GCTCACATGAGC
1 GCTCACATGAGC
26823932 ATTCTGGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 4 0.13
25 25 0.83
26 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (25 bp):
GCTCACATGAGCTACCTGTTATATC
Found at i:26837282 original size:35 final size:33
Alignment explanation
Indices: 26837228--26837292 Score: 94
Period size: 35 Copynumber: 1.9 Consensus size: 33
26837218 TCTAATACAT
*
26837228 ATTTCATTTCATGTCATTTGCTATTTCAATAGC
1 ATTTCATTTCATGTCATTTGCCATTTCAATAGC
*
26837261 ATTTCATCTTCAATTTCATTTGCCATTTCAAT
1 ATTTCAT-TTC-ATGTCATTTGCCATTTCAAT
26837293 TTCAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.25
34 3 0.11
35 18 0.64
ACGTcount: A:0.25, C:0.20, G:0.06, T:0.49
Consensus pattern (33 bp):
ATTTCATTTCATGTCATTTGCCATTTCAATAGC
Found at i:26837292 original size:18 final size:18
Alignment explanation
Indices: 26837232--26837296 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
26837222 ATACATATTT
*
26837232 CATTTC-ATGTCATTTGC
1 CATTTCAATTTCATTTGC
* **
26837249 TATTTCAATAGCATTT--
1 CATTTCAATTTCATTTGC
26837265 CATCTTCAATTTCATTTGC
1 CAT-TTCAATTTCATTTGC
26837284 CATTTCAATTTCA
1 CATTTCAATTTCA
26837297 ATAATACAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
16 2 0.05
17 16 0.42
18 17 0.45
19 3 0.08
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.48
Consensus pattern (18 bp):
CATTTCAATTTCATTTGC
Found at i:26846058 original size:6 final size:6
Alignment explanation
Indices: 26846047--26846077 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
26846037 TCATTCCTCA
26846047 TCTTTT TCTTTT TCTTTT TCTTCTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTT-TT TCTTTT
26846078 CAGTTTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:26846974 original size:27 final size:27
Alignment explanation
Indices: 26846943--26847187 Score: 285
Period size: 27 Copynumber: 9.1 Consensus size: 27
26846933 TTACACTATT
*
26846943 ATGACCGAATTACCCCCATAGGATAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
* *
26846970 ATGACTGAATTACCCCTATAGGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
* *
26846997 ATAACCGAATTACCCCCATAAGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
* * * **
26847024 ATAACTGAATTAACCTTATAGGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
**
26847051 ATGATTGAATTA-CCCCATAGGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
* *
26847077 ATGACCGAATTACCCCATATAGGGTAAG
1 ATGACCGAATTACCCC-CATAGGGTAAA
* *
26847105 ACGACTGAATTACCCCCATAGGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
*
26847132 ATGACCAAATTACCCCCATAGGGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
* * **
26847159 ATGATCGAAATACCCCCATATTGTAAA
1 ATGACCGAATTACCCCCATAGGGTAAA
26847186 AT
1 AT
26847188 AACTGCTATA
Statistics
Matches: 184, Mismatches: 32, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
26 22 0.12
27 139 0.76
28 23 0.12
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (27 bp):
ATGACCGAATTACCCCCATAGGGTAAA
Found at i:26847617 original size:33 final size:33
Alignment explanation
Indices: 26847544--26847637 Score: 108
Period size: 28 Copynumber: 3.0 Consensus size: 33
26847534 TGCATTATTG
* *
26847544 CACTGTACCGTTATTGTATTGGGCTAAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
26847577 CA---T--TGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
* * *
26847605 CACTGTACTGTTACTGAATAGGGCTCAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
26847638 GACTATCACT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
28 25 0.49
30 1 0.02
31 1 0.02
33 24 0.47
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29
Consensus pattern (33 bp):
CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:26850775 original size:42 final size:42
Alignment explanation
Indices: 26850684--26850780 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 42
26850674 GTTTCAAGTT
** ** *
26850684 AGTGAGTTACACGGCCTGGCACACGACTGTGTGTGGCAACTT
1 AGTGAGTTACACGGCCTGGCACACGACCATGTGTACCAACTC
*
26850726 AGAGAGTTACACGGCCT-GCGACACGACCATGTG-ACCTAACTC
1 AGTGAGTTACACGGCCTGGC-ACACGACCATGTGTACC-AACTC
26850768 AGTGAGTTACACG
1 AGTGAGTTACACG
26850781 AGTGAGGACA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 3 0.07
42 43 0.93
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (42 bp):
AGTGAGTTACACGGCCTGGCACACGACCATGTGTACCAACTC
Found at i:26854835 original size:23 final size:23
Alignment explanation
Indices: 26854808--26854861 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
26854798 ATGAATAAAG
*
26854808 ATGAACAGGAAATATTCTTTGGC
1 ATGAACAGGAAATATTCTCTGGC
*
26854831 ATGAATAGGAAATATTCTCTGGC
1 ATGAACAGGAAATATTCTCTGGC
26854854 ATGAACAG
1 ATGAACAG
26854862 TAGAAATCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (23 bp):
ATGAACAGGAAATATTCTCTGGC
Found at i:26860098 original size:28 final size:27
Alignment explanation
Indices: 26860059--26860123 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
26860049 GTCTGTGGAA
* *
26860059 AAATTGAGAGAAACGAACAATGAAAAAG
1 AAATTGAAAGAAACGAA-AAAGAAAAAG
*
26860087 AAATTGAAAGAAATGAAAAAGAAAAAG
1 AAATTGAAAGAAACGAAAAAGAAAAAG
*
26860114 AAAGTGAAAG
1 AAATTGAAAG
26860124 TAAAAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 18 0.55
28 15 0.45
ACGTcount: A:0.65, C:0.03, G:0.22, T:0.11
Consensus pattern (27 bp):
AAATTGAAAGAAACGAAAAAGAAAAAG
Found at i:26860116 original size:21 final size:21
Alignment explanation
Indices: 26860077--26860117 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26860067 AGAAACGAAC
**
26860077 AATGAAAAAGAAATTGAAAGA
1 AATGAAAAAGAAAAAGAAAGA
26860098 AATGAAAAAGAAAAAGAAAG
1 AATGAAAAAGAAAAAGAAAG
26860118 TGAAAGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.10
Consensus pattern (21 bp):
AATGAAAAAGAAAAAGAAAGA
Found at i:26867892 original size:19 final size:19
Alignment explanation
Indices: 26867867--26867911 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
26867857 ACATAGTGTT
*
26867867 CCTTTTCATGTAATCGTAA
1 CCTTTTCATGCAATCGTAA
*
26867886 TCTTTTCATGCAATCGTAA
1 CCTTTTCATGCAATCGTAA
26867905 CCTTTTC
1 CCTTTTC
26867912 TTTTCAATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (19 bp):
CCTTTTCATGCAATCGTAA
Found at i:26878697 original size:26 final size:26
Alignment explanation
Indices: 26878668--26878836 Score: 81
Period size: 26 Copynumber: 6.8 Consensus size: 26
26878658 TCCTCTCTCA
*
26878668 AGCCATATAAT-AGGAGGCTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
26878694 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * * *
26878720 AGCC--T-ATCAAGAAGGTTATC--CG
1 AGCCATTAATCAGGAAGCTCA-CAAAG
* * *
26878742 GGCTATATAA-CAGGAAGCTCA-TAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
26878767 AGCCA-TAATCAGGAAGTTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * * *
26878792 A-ACTTTCAATCAGGAAGCTCGCGAAG
1 AGCCATT-AATCAGGAAGCTCACAAAG
* *
26878818 AGCCTTTAACCAGG-AGCTC
1 AGCCATTAATCAGGAAGCTC
26878837 CGGATAACCA
Statistics
Matches: 106, Mismatches: 24, Indels: 27
0.68 0.15 0.17
Matches are distributed among these distances:
22 3 0.03
23 12 0.11
24 13 0.12
25 27 0.25
26 47 0.44
27 4 0.04
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:26879586 original size:20 final size:20
Alignment explanation
Indices: 26879545--26879586 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
26879535 AGCCTATGTA
*
26879545 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTACAATTT
*
26879565 TTTCATAAATTTTACATATTT
1 TTTCATAAAATTTACA-ATTT
26879586 T
1 T
26879587 CAATATAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTCATAAAATTTACAATTT
Found at i:26879819 original size:14 final size:15
Alignment explanation
Indices: 26879800--26879829 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26879790 GTTGGCTTGA
26879800 GGTTAG-GTTTCCAT
1 GGTTAGAGTTTCCAT
26879814 GGTTAGAGTTTCCAT
1 GGTTAGAGTTTCCAT
26879829 G
1 G
26879830 CTTTTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.17, C:0.13, G:0.30, T:0.40
Consensus pattern (15 bp):
GGTTAGAGTTTCCAT
Found at i:26887520 original size:4 final size:4
Alignment explanation
Indices: 26887511--26887601 Score: 182
Period size: 4 Copynumber: 22.8 Consensus size: 4
26887501 TTTGAGAAGT
26887511 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
26887559 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
26887602 GCTCTCTGTG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 87 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:26888227 original size:50 final size:50
Alignment explanation
Indices: 26888166--26888362 Score: 216
Period size: 50 Copynumber: 4.0 Consensus size: 50
26888156 CTTTGTAGTG
* * * *
26888166 AATTGTTTGGGAAGCCTTTGTGACGAGTCATCTGGGAAGCCCTTATGGCA
1 AATTGTTTGGGAAACCTTTGTGGCGAGTCATCTGGAAAGCCCTTGTGGCA
* * * * *
26888216 AATTGTTTGGGAAATCTTTATGGTGAGTCATTTGTAAAGCCCTTGTGGCA
1 AATTGTTTGGGAAACCTTTGTGGCGAGTCATCTGGAAAGCCCTTGTGGCA
* * * * * **
26888266 AATTATTTAGGAAACCTTTGT-GCGATTCATCTGTAAAGCCTTTGTGGTG
1 AATTGTTTGGGAAACCTTTGTGGCGAGTCATCTGGAAAGCCCTTGTGGCA
* * *
26888315 AATTGTTTGGGAAATCTTTGTGGCAAGTCATCTGGAAAGCCTTTGTGG
1 AATTGTTTGGGAAACCTTTGTGGCGAGTCATCTGGAAAGCCCTTGTGG
26888363 GGAGTCATTT
Statistics
Matches: 121, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
49 40 0.33
50 81 0.67
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (50 bp):
AATTGTTTGGGAAACCTTTGTGGCGAGTCATCTGGAAAGCCCTTGTGGCA
Found at i:26888324 original size:99 final size:100
Alignment explanation
Indices: 26888166--26888362 Score: 243
Period size: 99 Copynumber: 2.0 Consensus size: 100
26888156 CTTTGTAGTG
* * * *
26888166 AATTGTTTGGGAAGCCTTTGTGACGAGTCATCTGGGAAGCCCTTATGGCAAATTGTTTGGGAAAT
1 AATTATTTAGGAAACCTTTGTGACGAGTCATCTGGAAAGCCCTTATGGCAAATTGTTTGGGAAAT
** * *
26888231 CTTTATGGTGAGTCATTTGTAAAGCCCTTGTGGCA
66 CTTTATGGCAAGTCATCTGGAAAGCCCTTGTGGCA
* * * * **
26888266 AATTATTTAGGAAACCTTTGTG-CGATTCATCTGTAAAGCCTTTGTGGTGAATTGTTTGGGAAAT
1 AATTATTTAGGAAACCTTTGTGACGAGTCATCTGGAAAGCCCTTATGGCAAATTGTTTGGGAAAT
* *
26888330 CTTTGTGGCAAGTCATCTGGAAAGCCTTTGTGG
66 CTTTATGGCAAGTCATCTGGAAAGCCCTTGTGG
26888363 GGAGTCATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 62 0.77
100 19 0.23
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (100 bp):
AATTATTTAGGAAACCTTTGTGACGAGTCATCTGGAAAGCCCTTATGGCAAATTGTTTGGGAAAT
CTTTATGGCAAGTCATCTGGAAAGCCCTTGTGGCA
Found at i:26888374 original size:50 final size:50
Alignment explanation
Indices: 26888152--26888377 Score: 202
Period size: 50 Copynumber: 4.5 Consensus size: 50
26888142 AAACCAAACC
* * * ** * **
26888152 AAGCCTTTGTAGTGAATTGTTTGGGAAGCCTTTGTGACGAGTCATCTGGG
1 AAGCCTTTGTGGCGAATTATTTGGGAAATCTTTGTGGCGAGTCATCTGTA
* * * * * * *
26888202 AAGCCCTTATGGCAAATTGTTTGGGAAATCTTTATGGTGAGTCATTTGTA
1 AAGCCTTTGTGGCGAATTATTTGGGAAATCTTTGTGGCGAGTCATCTGTA
* * * * *
26888252 AAGCCCTTGTGGCAAATTATTTAGGAAACCTTTGT-GCGATTCATCTGTA
1 AAGCCTTTGTGGCGAATTATTTGGGAAATCTTTGTGGCGAGTCATCTGTA
* * * *
26888301 AAGCCTTTGTGGTGAATTGTTTGGGAAATCTTTGTGGCAAGTCATCTGGA
1 AAGCCTTTGTGGCGAATTATTTGGGAAATCTTTGTGGCGAGTCATCTGTA
* * *
26888351 AAGCCTTTGTGGGGAGTCATTTGGGAA
1 AAGCCTTTGTGGCGAATTATTTGGGAA
26888378 GTTTGTAAGG
Statistics
Matches: 141, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
49 40 0.28
50 101 0.72
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (50 bp):
AAGCCTTTGTGGCGAATTATTTGGGAAATCTTTGTGGCGAGTCATCTGTA
Found at i:26889760 original size:119 final size:119
Alignment explanation
Indices: 26889549--26889789 Score: 482
Period size: 119 Copynumber: 2.0 Consensus size: 119
26889539 AGCAATAATC
26889549 AACATATCACAATTCAAACCTTTAAATCTTGAGAACAACAAACTATGGAAACATCCAATATATCA
1 AACATATCACAATTCAAACCTTTAAATCTTGAGAACAACAAACTATGGAAACATCCAATATATCA
26889614 TGGAAAAATTCATGCAACAATTGTACCACATTGCCTTTATTTCCCCAAAACATA
66 TGGAAAAATTCATGCAACAATTGTACCACATTGCCTTTATTTCCCCAAAACATA
26889668 AACATATCACAATTCAAACCTTTAAATCTTGAGAACAACAAACTATGGAAACATCCAATATATCA
1 AACATATCACAATTCAAACCTTTAAATCTTGAGAACAACAAACTATGGAAACATCCAATATATCA
26889733 TGGAAAAATTCATGCAACAATTGTACCACATTGCCTTTATTTCCCCAAAACATA
66 TGGAAAAATTCATGCAACAATTGTACCACATTGCCTTTATTTCCCCAAAACATA
26889787 AAC
1 AAC
26889790 GGATTAATAA
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 122 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (119 bp):
AACATATCACAATTCAAACCTTTAAATCTTGAGAACAACAAACTATGGAAACATCCAATATATCA
TGGAAAAATTCATGCAACAATTGTACCACATTGCCTTTATTTCCCCAAAACATA
Found at i:26890229 original size:39 final size:39
Alignment explanation
Indices: 26890070--26890246 Score: 183
Period size: 39 Copynumber: 4.5 Consensus size: 39
26890060 ATTCACTTTT
** * * * **
26890070 AAGCATATATCATATTACACATATAATCACATAAAATTT
1 AAGCATATATCGCAATACTCATATAATCACATAACATCC
* * *
26890109 AAGCATATATCACAATACTCATATAATTACATAACTTCC
1 AAGCATATATCGCAATACTCATATAATCACATAACATCC
* * * * * * *
26890148 AAGCACATATCGCAATAATGACATAATAACATAGCATTC
1 AAGCATATATCGCAATACTCATATAATCACATAACATCC
26890187 AAGCATATATCGCAATACTCATATAATCACATAACATCC
1 AAGCATATATCGCAATACTCATATAATCACATAACATCC
* *
26890226 AAGCATATGTTGCAATACTCA
1 AAGCATATATCGCAATACTCA
26890247 AAAACATGTT
Statistics
Matches: 112, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (39 bp):
AAGCATATATCGCAATACTCATATAATCACATAACATCC
Found at i:26896376 original size:50 final size:50
Alignment explanation
Indices: 26896301--26896398 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
26896291 GTAAACTCTG
*
26896301 CCATTTACTTTAAGTATAAATACCCCACTCATTCCCCATAACAAACATTT
1 CCATTTACTTCAAGTATAAATACCCCACTCATTCCCCATAACAAACATTT
*
26896351 CCATTTACTTCAAGTATAGATACCCCACTCATTCCCCATAACAAACAT
1 CCATTTACTTCAAGTATAAATACCCCACTCATTCCCCATAACAAACAT
26896399 CCTTCATCCC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.36, C:0.32, G:0.03, T:0.30
Consensus pattern (50 bp):
CCATTTACTTCAAGTATAAATACCCCACTCATTCCCCATAACAAACATTT
Found at i:26902298 original size:11 final size:11
Alignment explanation
Indices: 26902232--26902298 Score: 53
Period size: 12 Copynumber: 5.8 Consensus size: 11
26902222 AAATTTAATT
* *
26902232 TTTTATTTTAA
1 TTTTAATTTCA
*
26902243 TTTTAATTTTAA
1 TTTTAA-TTTCA
*
26902255 TTTTAATTTTAA
1 TTTTAA-TTTCA
*
26902267 TTTTAATTTTAA
1 TTTTAA-TTTCA
26902279 TTTTAATTTCA
1 TTTTAATTTCA
*
26902290 TTTTTATTT
1 TTTTAATTT
26902299 TTTCAATAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
11 17 0.33
12 35 0.67
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTAATTTCA
Found at i:26902300 original size:6 final size:6
Alignment explanation
Indices: 26902225--26902287 Score: 108
Period size: 6 Copynumber: 10.3 Consensus size: 6
26902215 GTAAAACAAA
*
26902225 TTTAATT TTTTAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
1 TTTAA-T TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
26902274 TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TT
26902288 CATTTTTATT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
6 50 0.93
7 4 0.07
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTAAT
Found at i:26904563 original size:25 final size:25
Alignment explanation
Indices: 26904498--26904582 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
26904488 GTCATTAGGG
* *
26904498 TTACCGATTCT-CAACTCGTATGAGC
1 TTACCGATT-TGCAGCTCATATGAGC
*
26904523 TTACCGATTTGCAGCTCTTGA-GAGC
1 TTACCGATTTGCAGCTCAT-ATGAGC
*
26904548 TTACCGATTCT-TAGCTCATATGAGC
1 TTACCGATT-TGCAGCTCATATGAGC
*
26904573 TTATCGATTT
1 TTACCGATTT
26904583 ACAATTTTGG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
24 3 0.06
25 46 0.90
26 2 0.04
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (25 bp):
TTACCGATTTGCAGCTCATATGAGC
Found at i:26904603 original size:50 final size:50
Alignment explanation
Indices: 26904499--26904619 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 50
26904489 TCATTAGGGT
* * * * *
26904499 TACCGATTCTCAACTCGTATGAGCTTACCGATTTGCAGCTCTTGAGAGCT
1 TACCGATTCTTAGCTCGTATGAGCTTACCGATTTACAGATCTTGAGAGCA
* * * *
26904549 TACCGATTCTTAGCTCATATGAGCTTATCGATTTACA-ATTTTGGAGATCA
1 TACCGATTCTTAGCTCGTATGAGCTTACCGATTTACAGATCTT-GAGAGCA
*
26904599 TACCGATTCATAGCTCGTATG
1 TACCGATTCTTAGCTCGTATG
26904620 GGCATACATG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 3 0.05
50 56 0.95
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (50 bp):
TACCGATTCTTAGCTCGTATGAGCTTACCGATTTACAGATCTTGAGAGCA
Found at i:26910145 original size:18 final size:19
Alignment explanation
Indices: 26910112--26910147 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26910102 ATAGGTCAGT
26910112 GTAATTTCTCATGTTTTTA
1 GTAATTTCTCATGTTTTTA
*
26910131 GTAATTT-TTATGTTTTT
1 GTAATTTCTCATGTTTTT
26910148 GAACTCGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.19, C:0.06, G:0.11, T:0.64
Consensus pattern (19 bp):
GTAATTTCTCATGTTTTTA
Found at i:26913922 original size:19 final size:19
Alignment explanation
Indices: 26913898--26913934 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26913888 TAGGTCAAAG
26913898 TGTAATAGTTAATTTAATA
1 TGTAATAGTTAATTTAATA
26913917 TGTAATAGTTAATTTAAT
1 TGTAATAGTTAATTTAAT
26913935 TTGATGTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (19 bp):
TGTAATAGTTAATTTAATA
Found at i:26915792 original size:11 final size:11
Alignment explanation
Indices: 26915778--26915911 Score: 81
Period size: 11 Copynumber: 12.9 Consensus size: 11
26915768 ATTTTTTTTA
26915778 TTTTAAAATAC
1 TTTTAAAATAC
26915789 TTTTAAAATAC
1 TTTTAAAATAC
26915800 TTTTTAAAAT--
1 -TTTTAAAATAC
*** *
26915810 TTTT-TTTTAA
1 TTTTAAAATAC
*
26915820 TTTTAAAATAT
1 TTTTAAAATAC
*
26915831 TTTTAAAATAT
1 TTTTAAAATAC
26915842 TTTTAAAATAC
1 TTTTAAAATAC
**
26915853 TTTTTTAAT--
1 TTTTAAAATAC
* *
26915862 TTTT---TTAA
1 TTTTAAAATAC
*
26915870 TTTTAAAATAT
1 TTTTAAAATAC
26915881 TTTTAAAATAC
1 TTTTAAAATAC
26915892 TTTTTAAAAT--
1 -TTTTAAAATAC
26915902 TTTTAAAATA
1 TTTTAAAATA
26915912 AATTTTTGGT
Statistics
Matches: 98, Mismatches: 14, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
6 1 0.01
8 5 0.05
9 17 0.17
10 4 0.04
11 53 0.54
12 18 0.18
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:26916777 original size:22 final size:22
Alignment explanation
Indices: 26916747--26916790 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26916737 GAAAGTTTCA
* *
26916747 CCTTTGAAGAAAGTATTTTGGT
1 CCTTGGAAGAAAGTACTTTGGT
26916769 CCTTGGAAGAAAGTACTTTGGT
1 CCTTGGAAGAAAGTACTTTGGT
26916791 TTGACAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.36
Consensus pattern (22 bp):
CCTTGGAAGAAAGTACTTTGGT
Found at i:26918915 original size:50 final size:50
Alignment explanation
Indices: 26918860--26918959 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26918850 ATTTGATCTG
26918860 ATAAGCTTTATCGTTTAATCGACGAATTTACTAAGCTTTATGTAAGCTTA
1 ATAAGCTTTATCGTTTAATCGACGAATTTACTAAGCTTTATGTAAGCTTA
26918910 ATAAGCTTTATCGTTTAATCGACGAATTTACTAAGCTTTATGTAAGCTTA
1 ATAAGCTTTATCGTTTAATCGACGAATTTACTAAGCTTTATGTAAGCTTA
26918960 CTTGTGTTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (50 bp):
ATAAGCTTTATCGTTTAATCGACGAATTTACTAAGCTTTATGTAAGCTTA
Found at i:26920297 original size:12 final size:12
Alignment explanation
Indices: 26920264--26920302 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26920254 AATTTTAATT
26920264 TAAAAAATTTGAA
1 TAAAAAATTT-AA
* *
26920277 GACAAAATTTAA
1 TAAAAAATTTAA
26920289 TAAAAAATTTAA
1 TAAAAAATTTAA
26920301 TA
1 TA
26920303 TTTTATTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 14 0.64
13 8 0.36
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (12 bp):
TAAAAAATTTAA
Found at i:26929642 original size:20 final size:21
Alignment explanation
Indices: 26929606--26929654 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
26929596 ATTATATTAA
**
26929606 TAAAT-TTAATAATTAAATTG
1 TAAATATTAATAATTAAAAAG
*
26929626 TAAATATTAATCA-TAAAAAG
1 TAAATATTAATAATTAAAAAG
26929646 TAAATATTA
1 TAAATATTA
26929655 TATTAATGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (21 bp):
TAAATATTAATAATTAAAAAG
Found at i:26931991 original size:27 final size:29
Alignment explanation
Indices: 26931961--26932020 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 29
26931951 GCAGGTTTTG
26931961 AATTTTGA-ATTTTGAATTTCGAGTTT-A
1 AATTTTGAGATTTTGAATTTCGAGTTTCA
*
26931988 AA-TTTGAGATTTTGGATTTCGAGTTTCA
1 AATTTTGAGATTTTGAATTTCGAGTTTCA
26932016 AATTT
1 AATTT
26932021 CGAGTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 5 0.17
27 19 0.66
28 3 0.10
29 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (29 bp):
AATTTTGAGATTTTGAATTTCGAGTTTCA
Found at i:26932020 original size:14 final size:13
Alignment explanation
Indices: 26931975--26932028 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 13
26931965 TTGAATTTTG
26931975 AATTTCGAGTTTA
1 AATTTCGAGTTTA
*
26931988 AATTT-GAGATTTTG
1 AATTTCGAG--TTTA
*
26932002 GATTTCGAGTTTCA
1 AATTTCGAGTTT-A
26932016 AATTTCGAGTTTA
1 AATTTCGAGTTTA
26932029 TTTTTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 3 0.09
13 9 0.27
14 18 0.55
15 3 0.09
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (13 bp):
AATTTCGAGTTTA
Found at i:26936304 original size:384 final size:384
Alignment explanation
Indices: 26935592--26936359 Score: 1518
Period size: 384 Copynumber: 2.0 Consensus size: 384
26935582 TTTCTCTTTT
26935592 ACATAAGATTCCCCTACTTCCCAGTTTTAAGTTTTCTTATATTTAAATTTTTAAAAATAATTAAC
1 ACATAAGATTCCCCTACTTCCCAGTTTTAAGTTTTCTTATATTTAAATTTTTAAAAATAATTAAC
26935657 TGGTCAAATTTATTACAATTATTAAATTTATATTTTAGTCCAAATTACTAATATTTATAAAAAAA
66 TGGTCAAATTTATTACAATTATTAAATTTATATTTTAGTCCAAATTACTAATATTTATAAAAAAA
26935722 TTTAAAGTTAATTACTGTAATTCTTATTTTAAATTGGTTCTTAAACGTTCTTAATCGAATTTCAA
131 TTTAAAGTTAATTACTGTAATTCTTATTTTAAATTGGTTCTTAAACGTTCTTAATCGAATTTCAA
*
26935787 TTCATCTATATACTTTTAATTAGGAAATGACTTTGGGATCTAGATAGTAATTATCCTGTGGACTA
196 TTCATCTATATACTTTTAATTAGGAAATGACTTTGGGATCTAGATAGTAATTATCCTATGGACTA
26935852 AAATGGCTATTAAACCATTGTTTTCATATAGCTAGTGGATGGTAATATAAACGGTTTAAGGCTAA
261 AAATGGCTATTAAACCATTGTTTTCATATAGCTAGTGGATGGTAATATAAACGGTTTAAGGCTAA
26935917 ATTATTAATTAAAAATAGTTTAATTAAAGAATAAATTAAGGTTAATTAAGATTAAATAA
326 ATTATTAATTAAAAATAGTTTAATTAAAGAATAAATTAAGGTTAATTAAGATTAAATAA
26935976 ACATAAGATTCCCCTACTTCCCAGTTTTAAGTTTTCTTATATTTAAATTTTTAAAAATAATTAAC
1 ACATAAGATTCCCCTACTTCCCAGTTTTAAGTTTTCTTATATTTAAATTTTTAAAAATAATTAAC
26936041 TGGTCAAATTTATTACAATTATTAAATTTATATTTTAGTCCAAATTACTAATATTTATAAAAAAA
66 TGGTCAAATTTATTACAATTATTAAATTTATATTTTAGTCCAAATTACTAATATTTATAAAAAAA
26936106 TTTAAAGTTAATTACTGTAATTCTTATTTTAAATTGGTTCTTAAACGTTCTTAATCGAATTTCAA
131 TTTAAAGTTAATTACTGTAATTCTTATTTTAAATTGGTTCTTAAACGTTCTTAATCGAATTTCAA
26936171 TTCATCTATATACTTTTAATTAGGAAATGACTTTGGGATCTAGATAGTAATTATCCTATGGACTA
196 TTCATCTATATACTTTTAATTAGGAAATGACTTTGGGATCTAGATAGTAATTATCCTATGGACTA
*
26936236 AAATGGCTATTAAACCATTGTTTTCATATAGCTAGTGGATGGTAATATAAACGGTTTAAGGTTAA
261 AAATGGCTATTAAACCATTGTTTTCATATAGCTAGTGGATGGTAATATAAACGGTTTAAGGCTAA
26936301 ATTATTAATTAAAAATAGTTTAATTAAAGAATAAATTAAGGTTAATTAAGATTAAATAA
326 ATTATTAATTAAAAATAGTTTAATTAAAGAATAAATTAAGGTTAATTAAGATTAAATAA
26936360 GGATTAATAT
Statistics
Matches: 382, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
384 382 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.41
Consensus pattern (384 bp):
ACATAAGATTCCCCTACTTCCCAGTTTTAAGTTTTCTTATATTTAAATTTTTAAAAATAATTAAC
TGGTCAAATTTATTACAATTATTAAATTTATATTTTAGTCCAAATTACTAATATTTATAAAAAAA
TTTAAAGTTAATTACTGTAATTCTTATTTTAAATTGGTTCTTAAACGTTCTTAATCGAATTTCAA
TTCATCTATATACTTTTAATTAGGAAATGACTTTGGGATCTAGATAGTAATTATCCTATGGACTA
AAATGGCTATTAAACCATTGTTTTCATATAGCTAGTGGATGGTAATATAAACGGTTTAAGGCTAA
ATTATTAATTAAAAATAGTTTAATTAAAGAATAAATTAAGGTTAATTAAGATTAAATAA
Found at i:26936356 original size:21 final size:22
Alignment explanation
Indices: 26936320--26936367 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
26936310 TAAAAATAGT
26936320 TTAATTAAAGAATAAATTAAGG-
1 TTAATTAAAGAATAAA-TAAGGA
*
26936342 TTAATT-AAGATTAAATAAGGA
1 TTAATTAAAGAATAAATAAGGA
26936363 TTAAT
1 TTAAT
26936368 ATTAGTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 5 0.21
21 13 0.54
22 6 0.25
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.35
Consensus pattern (22 bp):
TTAATTAAAGAATAAATAAGGA
Found at i:26937771 original size:20 final size:20
Alignment explanation
Indices: 26937731--26937772 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26937721 TATTTAAATT
*
26937731 TTTTTGAAAATTATTTAGAA
1 TTTTTGAAAATAATTTAGAA
26937751 TTTTTGAAAATCAATTT-GAA
1 TTTTTGAAAAT-AATTTAGAA
26937771 TT
1 TT
26937773 ATTTTGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTTTGAAAATAATTTAGAA
Found at i:26938404 original size:289 final size:286
Alignment explanation
Indices: 26937854--26938416 Score: 772
Period size: 289 Copynumber: 2.0 Consensus size: 286
26937844 CACTAATCTG
* * * **
26937854 TTATTCGAATTATTCAAGTTAATCAAATTATAAAATTTAACTTGACTCAAACTCAAAACTTGAAT
1 TTATTCAAATTATTCAAGTTAATCAAATTACAAAATTTAACTCGACTCAAACTCAAAACTCAAAT
*
26937919 TACTTATCCGAGTTTACTCAAATAACTCGATTGGATGAACTCAAAATTCGATTTTTTTTCACTTT
66 TACTTATCCGAGTTTACTCAAATAACTCGATTGGATGAACTCAAAATTCGATTTTTTTTCAATTT
*
26937984 TTTTAATCGAATTGAGTTTTTCTCACCCTAGTTGGCATGCCATAAGGTCAAGATATTGATTAGAA
131 TTTGAATCGAATTGAGTTTTTCTCACCCTAGTTGGCATGCCATAAGGTCAAGATATTGATTAGAA
* * ** * * *
26938049 ATCATCATTTCTCAGGAACTCCGGGTGGTAGATTGTGCATATAAAGTCATCGTTGCTGTAACACC
196 ACCATCATTTCTCAGGAACTCCAGGTAATAGATTGTACATATAAAGTCATCGTTACTATAACACC
*
26938114 CCATACATGACCCGGTCGCCAATCCA
261 CCATACACGACCCGGTCGCCAATCCA
* * * * * * *
26938140 TTATTCAAATTA-TCGAGTTATTCGAATTACAAATTTTAACTCGACTCGAATTCGAAACTCAAAT
1 TTATTCAAATTATTCAAGTTAATCAAATTACAAAATTTAACTCGACTCAAACTCAAAACTCAAAT
* ** * *
26938204 TACTTATCCGAGTTTACTTAAATAACTTTATTGGATGAACTCAAATTTTGATTTTTTTTTCTAAT
66 TACTTATCCGAGTTTACTCAAATAACTCGATTGGATGAACTCAAAATTCGA-TTTTTTTTC-AAT
* *
26938269 TTTTTCGAATCGAATTGAGTTTTTCTCACCCCTATTTGGCATGCCATATGGTCAAGATATTGATT
129 TTTTT-GAATCGAATTGAGTTTTTCTCA-CCCTAGTTGGCATGCCATAAGGTCAAGATATTGATT
**
26938334 AGAAACCATCATTT-TTGGGCAAC-CCTAGGTAATAGATTGTACATATAAAGTCATCGTTACTAT
192 AGAAACCATCATTTCTCAGG-AACTCC-AGGTAATAGATTGTACATATAAAGTCATCGTTACTAT
26938397 AACACCCCATACACGACCCG
255 AACACCCCATACACGACCCG
26938417 ATTGTTGGGT
Statistics
Matches: 240, Mismatches: 31, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
285 87 0.36
286 20 0.08
287 7 0.03
288 26 0.11
289 100 0.42
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (286 bp):
TTATTCAAATTATTCAAGTTAATCAAATTACAAAATTTAACTCGACTCAAACTCAAAACTCAAAT
TACTTATCCGAGTTTACTCAAATAACTCGATTGGATGAACTCAAAATTCGATTTTTTTTCAATTT
TTTGAATCGAATTGAGTTTTTCTCACCCTAGTTGGCATGCCATAAGGTCAAGATATTGATTAGAA
ACCATCATTTCTCAGGAACTCCAGGTAATAGATTGTACATATAAAGTCATCGTTACTATAACACC
CCATACACGACCCGGTCGCCAATCCA
Found at i:26939479 original size:14 final size:14
Alignment explanation
Indices: 26939435--26939482 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
26939425 TAGTTATTTG
26939435 TTTATTTTATTGTTTA
1 TTTATTTT-TTG-TTA
*
26939451 TTTA-TTTTAGTTA
1 TTTATTTTTTGTTA
*
26939464 TTTATTTTTTGATA
1 TTTATTTTTTGTTA
26939478 TTTAT
1 TTTAT
26939483 CTCTTTTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 7 0.25
14 14 0.50
15 3 0.11
16 4 0.14
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (14 bp):
TTTATTTTTTGTTA
Found at i:26943311 original size:20 final size:19
Alignment explanation
Indices: 26943286--26943325 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26943276 TATTAATTTC
26943286 ATTAATAATATAATTGTAAA
1 ATTAATAATA-AATTGTAAA
* *
26943306 ATTAATACTAAATTTTAAA
1 ATTAATAATAAATTGTAAA
26943325 A
1 A
26943326 ACATGAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (19 bp):
ATTAATAATAAATTGTAAA
Found at i:26948706 original size:27 final size:27
Alignment explanation
Indices: 26948669--26948724 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
26948659 TGATACATTC
*
26948669 ATATAACTAAAATAAAAATT-AAATTAT
1 ATATAAATAAAATAAAAATTGAAA-TAT
* *
26948696 ATATAAATAAATTAATAATTGAAATAT
1 ATATAAATAAAATAAAAATTGAAATAT
26948723 AT
1 AT
26948725 TTGAATAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.88
28 3 0.12
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (27 bp):
ATATAAATAAAATAAAAATTGAAATAT
Found at i:26950361 original size:20 final size:20
Alignment explanation
Indices: 26950311--26950361 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 20
26950301 AATAGTTCTG
26950311 TCTCTTGATGAAC-ATATGTA
1 TCTCTTG-TGAACAATATGTA
26950331 TCT-TT-TGAACAAT-TGTA
1 TCTCTTGTGAACAATATGTA
26950348 TCTCTTGGTGAACA
1 TCTCTT-GTGAACA
26950362 GATTTATTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 12 0.44
18 4 0.15
19 2 0.07
20 9 0.33
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (20 bp):
TCTCTTGTGAACAATATGTA
Found at i:26953935 original size:19 final size:20
Alignment explanation
Indices: 26953899--26953942 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
26953889 GGAAACCTTG
* * *
26953899 TTTTTCAACATTTTACCACC
1 TTTTTCAACACTTAACCACA
26953919 TTTTTCAA-ACTTAACCACA
1 TTTTTCAACACTTAACCACA
26953938 TTTTT
1 TTTTT
26953943 ATGATCTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTTCAACACTTAACCACA
Found at i:26965918 original size:20 final size:20
Alignment explanation
Indices: 26965893--26965930 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26965883 CAAATTAAAC
*
26965893 AATAGTTCTGTCTTTTGATG
1 AATAGTTCTATCTTTTGATG
*
26965913 AATAGTTGTATCTTTTGA
1 AATAGTTCTATCTTTTGA
26965931 ACAATTGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (20 bp):
AATAGTTCTATCTTTTGATG
Found at i:26970016 original size:5 final size:5
Alignment explanation
Indices: 26970001--26970033 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
26969991 TTACTTATGT
26970001 TTTAA -TTAA TTTAA TTTAA TTTAA TTTAA TTTA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTA
26970034 TCGAATTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTAA
Found at i:26971400 original size:77 final size:77
Alignment explanation
Indices: 26971273--26971580 Score: 381
Period size: 77 Copynumber: 4.0 Consensus size: 77
26971263 TTTAATATCA
* ** **
26971273 CGACTGTTATTTTTAAGGTTTGCTTGATTTAAGATTGCGACCTTC-AGTATTCTAACAGTTTGCT
1 CGACTGTTATTTTTAAGGTTCGCTTGATTTAAGATCACGACCTTCGA-TATTCTAACAGTTCACT
*
26971337 CGATTGAAGATTG
65 CGATTTAAGATTG
* * * * **
26971350 CGACTTTTATTTTTATGGTTCGCTTGATTTAATATCATGACCTTC-AGTATTCTAACAGTTTGCT
1 CGACTGTTATTTTTAAGGTTCGCTTGATTTAAGATCACGACCTTCGA-TATTCTAACAGTTCACT
*
26971414 CAATTTAAGATTG
65 CGATTTAAGATTG
* * *
26971427 CGACTGTTATTTTTAAGGTTCGCTAGATTTAAGATCGCGATCTTCGATATTCTAACAGTTCACTC
1 CGACTGTTATTTTTAAGGTTCGCTTGATTTAAGATCACGACCTTCGATATTCTAACAGTTCACTC
*
26971492 GATTTAAGATCG
66 GATTTAAGATTG
* *
26971504 TGACTGTTATTTTTAAGGTTC-TTTCGATTTAAGATCGA-GACCTTCGATATTCTAACAGTTCAC
1 CGACTGTTATTTTTAAGGTTCGCTT-GATTTAAGATC-ACGACCTTCGATATTCTAACAGTTCAC
26971567 TCGATTTAAGATTG
64 TCGATTTAAGATTG
26971581 TGACCTTCGG
Statistics
Matches: 202, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
76 1 0.00
77 200 0.99
78 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.42
Consensus pattern (77 bp):
CGACTGTTATTTTTAAGGTTCGCTTGATTTAAGATCACGACCTTCGATATTCTAACAGTTCACTC
GATTTAAGATTG
Found at i:26971627 original size:194 final size:194
Alignment explanation
Indices: 26971387--26972252 Score: 521
Period size: 194 Copynumber: 4.5 Consensus size: 194
26971377 TTTAATATCA
** * *
26971387 TGACCTTCAGTATTCTAACAGTTTGCTCAATTTAAGATTGCGACTGTTATTTTTAAGGTTCGCT-
1 TGACCTTCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGACTGTCATTTTTAAGGTTCGCTC
* * **
26971451 AGATTTAAGATCGCGATCTTC-GATATTCTAACAGTTCACTCGATTTAAGATCGTGACTGTTATT
66 A-ATTTAAGATCGCGACCTTCAG-TATTCTAACAGTTCACTCGATTGAAGATCAAGACTGTTATT
*
26971515 TTTAAGGTTCT-TTCGATTTAAGATCGAGACCTTCGATATTCTAACAGTTCACTCGATTTAAGAT
129 TTTAAGGTT-TGCTCGATTTAAGATCGAGACCTTCGATATTCTAACAGTTCACTCGATTTAAGAT
26971579 TG
193 TG
* * * * *
26971581 TGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCGCGACTGTCATTTTTATGGTTTGCTC
1 TGACCTTCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGACTGTCATTTTTAAGGTTCGCTC
* * ** * *
26971646 AATTTAATATCGTGACCTTCAGTATTCTAACAGTTTGCTCGATTGAATATTAAGACTGTTATTTT
66 AATTTAAGATCGCGACCTTCAGTATTCTAACAGTTCACTCGATTGAAGATCAAGACTGTTATTTT
* * * * * **
26971711 TACGGTTTGCTCGATTTAAGATCGAGACTTTCGGTATTCTAATAGTTCACTCGATTTAATATCA
131 TAAGGTTTGCTCGATTTAAGATCGAGACCTTCGATATTCTAACAGTTCACTCGATTTAAGATTG
** * * * * * * * ** * * *
26971775 TGAATTTCA-T-TT-TTA-GGTTCGCTCGATTTAAGATTGTGACCTTTTGTATTCTAATAGTTCA
1 TGACCTTCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGA-CTGTCAT-TTTTAA-GGTTCG
* * * * * * * * **
26971836 CTCGATTTAAGAT--TG-TCTGTCA-T-TTTTAA-GGTTCGCTTGATTTAAGATTGAGACCT-TC
63 CTCAATTTAAGATCGCGACCT-TCAGTATTCTAACAGTTCACTCGATTGAAGATCAAGA-CTGT-
* * * * * * * * *
26971894 GATATTCTAATAGTTTGCTTGATTTAAGATCGCGGCTTTC-AT-TTGT-AC-GATTCGCTCGATT
125 TAT-TTTTAA-GGTTTGCTCGATTTAAGATCGAGACCTTCGATATTCTAACAG-TTCACTCGATT
*
26971955 TAAGATCG
187 TAAGATTG
* * * * * ** * *
26971963 TGACCTTCGGTATTCTAATAGTTTATTCGATTTAAGATCGTAACTATCATTTTTACGGTTCGCTC
1 TGACCTTCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGACTGTCATTTTTAAGGTTCGCTC
* * * * * *
26972028 AATTTAAGATAGTGACCTTCAGTATTCTAACAATTTC-CTTGATTTAATATCACA-ACTGTTATT
66 AATTTAAGATCGCGACCTTCAGTATTCTAAC-AGTTCACTCGATTGAAGATCA-AGACTGTTATT
* * * * *
26972091 TTTAAGGTTCGCTCAATTTAAGATCTCA-ACAGTT-GATATTCTAACAGTTCACTTGATTTAAGA
129 TTTAAGGTTTGCTCGATTTAAGATC-GAGAC-CTTCGATATTCTAACAGTTCACTCGATTTAAGA
**
26972154 TCA
192 TTG
* * * * ** * *
26972157 TG-TCTGTTA-T-TTCT-ACAGTTCGCTCAATTTAATATCATGACTTTCATTTTTACA-GTTCAC
1 TGACCT-TCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGACTGTCATTTTTA-AGGTTCGC
* *
26972217 T-AATTTAAGGTCGCGACCTTCCA-TTTTCTAACAGTT
64 TCAATTTAAGATCGCGACCTT-CAGTATTCTAACAGTT
26972253 TGCTTGGTTT
Statistics
Matches: 514, Mismatches: 124, Indels: 73
0.72 0.17 0.10
Matches are distributed among these distances:
187 1 0.00
188 42 0.08
189 32 0.06
190 58 0.11
191 101 0.20
192 40 0.08
193 31 0.06
194 202 0.39
195 7 0.01
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.42
Consensus pattern (194 bp):
TGACCTTCAGTATTCTAACAGTTCACTCAATTTAAGATCGCGACTGTCATTTTTAAGGTTCGCTC
AATTTAAGATCGCGACCTTCAGTATTCTAACAGTTCACTCGATTGAAGATCAAGACTGTTATTTT
TAAGGTTTGCTCGATTTAAGATCGAGACCTTCGATATTCTAACAGTTCACTCGATTTAAGATTG
Found at i:26971651 original size:77 final size:77
Alignment explanation
Indices: 26971561--26972197 Score: 566
Period size: 77 Copynumber: 8.3 Consensus size: 77
26971551 TATTCTAACA
* * *
26971561 GTTCACTCGATTTAAGATTGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCGCGACT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
*
26971626 GTCATTTTTATG
66 GTCATTTTTACG
* * * * * ** * * * *
26971638 GTTTGCTCAATTTAATATCGTGACCTTCAGTATTCTAACAGTTTGCTCGATTGAATATTAAGACT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
*
26971703 GTTATTTTTACG
66 GTCATTTTTACG
* * * * * *
26971715 GTTTGCTCGATTTAAGATCGAGACTTTCGGTATTCTAATAGTTCACTCGATTTAATATCATGAAT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
*
26971780 TTCATTTTTA-G
66 GTCATTTTTACG
* ** * *
26971791 GTTCGCTCGATTTAAGATTGTGACCTTTTGTATTCTAATAGTTCACTCGATTTAAGAT--TGTCT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
*
26971854 GTCATTTTTAAG
66 GTCATTTTTACG
* * * * ** * * *
26971866 GTTCGCTTGATTTAAGATTGAGACCTTCGATATTCTAATAGTTTGCTTGATTTAAGATCGCGGCT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
* *
26971931 TTCATTTGTACG
66 GTCATTTTTACG
* * * ***
26971943 ATTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTTATTCGATTTAAGATCGTAACT
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
*
26972008 ATCATTTTTACG
66 GTCATTTTTACG
* * * * * * * *
26972020 GTTCGCTCAATTTAAGATAGTGACCTTCAGTATTCTAACAATTTC-CTTGATTTAATATCACAAC
1 GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAA-TAGTTCACTCGATTTAAGATCACGAC
* *
26972084 TGTTATTTTTAAG
65 TGTCATTTTTACG
* * * * * * * *
26972097 GTTCGCTCAATTTAAGATC-TCAACAGTT-GATATTCTAACAGTTCACTTGATTTAAGATCATGT
1 GTTCGCTCGATTTAAGATCGT-GAC-CTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGA
* * *
26972160 CTGTTATTTCTACA
64 CTGTCATTTTTACG
* * *
26972174 GTTCGCTCAATTTAATATCATGAC
1 GTTCGCTCGATTTAAGATCGTGAC
26972198 TTTCATTTTT
Statistics
Matches: 455, Mismatches: 97, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
74 12 0.03
75 51 0.11
76 57 0.13
77 329 0.72
78 6 0.01
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (77 bp):
GTTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCACGACT
GTCATTTTTACG
Found at i:26971695 original size:40 final size:40
Alignment explanation
Indices: 26971298--26972059 Score: 272
Period size: 40 Copynumber: 19.8 Consensus size: 40
26971288 AGGTTTGCTT
* * **
26971298 GATTTAAGATTGCGACCTTCAGTATTCTAACAGTTTGCTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * * * * * ** * *
26971338 GATTGAAGATTGCGA-CTT--TTATTTTTATGGTTCGCTT
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * **
26971375 GATTTAATATCATGACCTTCAGTATTCTAACAGTTTGCTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * * * * * * *
26971415 AATTTAAGATTGCGA-CTGTTA-T-TTTTAA-GGTTCGCTA
1 GATTTAAGATCGTGACCT-TCAGTATTCTAACAGTTCACTC
* *
26971452 GATTTAAGATCGCGATCTTC-GATATTCTAACAGTTCACTC
1 GATTTAAGATCGTGACCTTCAG-TATTCTAACAGTTCACTC
* * * **
26971492 GATTTAAGATCGTGA-CTGTTA-T-TTTTAA-GGTTCTTTC
1 GATTTAAGATCGTGACCT-TCAGTATTCTAACAGTTCACTC
*
26971529 GATTTAAGATCGAGACCTTC-GATATTCTAACAGTTCACTC
1 GATTTAAGATCGTGACCTTCAG-TATTCTAACAGTTCACTC
* * *
26971569 GATTTAAGATTGTGACCTTCGGTATTCTAATAGTTCACTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * ** **
26971609 GATTTAAGATCGCGA-CTGTCA-T-TT-TTATGGTTTGCTC
1 GATTTAAGATCGTGACCT-TCAGTATTCTAACAGTTCACTC
* * **
26971646 AATTTAATATCGTGACCTTCAGTATTCTAACAGTTTGCTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * *** * * * **
26971686 GATTGAATATTAAGA-C-T--GTTATTTTTACGGTTTGCTC
1 GATTTAAGATCGTGACCTTCAG-TATTCTAACAGTTCACTC
* * * *
26971723 GATTTAAGATCGAGACTTTCGGTATTCTAATAGTTCACTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * ** * * *
26971763 GATTTAATATCATGAATTTCA-T-TT-TTA-GGTTCGCTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* ** *
26971799 GATTTAAGATTGTGACCTTTTGTATTCTAATAGTTCACTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * * * *
26971839 GATTTAAGAT--TG-TCTGTCA-T-TTTTAA-GGTTCGCTT
1 GATTTAAGATCGTGACCT-TCAGTATTCTAACAGTTCACTC
* * * ** *
26971874 GATTTAAGATTGAGACCTTC-GATATTCTAATAGTTTGCTT
1 GATTTAAGATCGTGACCTTCAG-TATTCTAACAGTTCACTC
* * * * *
26971914 GATTTAAGATCGCGGCTTTCA-T-TTGT-AC-GATTCGCTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAG-TTCACTC
* * * *
26971951 GATTTAAGATCGTGACCTTCGGTATTCTAATAGTTTATTC
1 GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
* * * *
26971991 GATTTAAGATCGT-AACTATCA-T-TT-TTACGGTTCGCTC
1 GATTTAAGATCGTGACCT-TCAGTATTCTAACAGTTCACTC
* *
26972028 AATTTAAGATAGTGACCTTCAGTATTCTAACA
1 GATTTAAGATCGTGACCTTCAGTATTCTAACA
26972060 ATTTCCTTGA
Statistics
Matches: 528, Mismatches: 144, Indels: 100
0.68 0.19 0.13
Matches are distributed among these distances:
35 16 0.03
36 28 0.05
37 166 0.31
38 45 0.09
39 44 0.08
40 226 0.43
41 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (40 bp):
GATTTAAGATCGTGACCTTCAGTATTCTAACAGTTCACTC
Found at i:26971906 original size:305 final size:306
Alignment explanation
Indices: 26971569--26972168 Score: 719
Period size: 305 Copynumber: 2.0 Consensus size: 306
26971559 CAGTTCACTC
* * *
26971569 GATTTAAGATTGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCGCGACTGTCATTTT
1 GATTTAAGATTGAGACCTTCGATATTCTAATAGTTCACTCGATTTAAGATCGCGACTGTCATTTG
* * * * * *
26971634 TATGGTTTGCTCAATTTAATATCGTGACCTTCAGTATTCTAACAGTTTGCTCGATTGAATAT-TA
66 TACGATTCGCTCAATTTAAGATCGTGACCTTCAGTATTCTAACAGTTTACTCGATTGAAGATCT-
* * * * * * * *
26971698 AGACTGTTATTTTTACGGTTTGCTCGATTTAAGATCGAGACTTTCGGTATTCTAA-TAGTTCACT
130 A-ACTATCATTTTTACGGTTCGCTCAATTTAAGATAGAGACCTTCAGTATTCTAACAAGTTC-CT
* * * * * **
26971762 CGATTTAATATCATGAA-T-TTCATTTTT-AGGTTCGCTCGATTTAAGATTGTGACCTTTTG-TA
193 CGATTTAATATCA-CAACTGTT-ATTTTTAAGGTTCGCTCAATTTAAGA-TCTCAACAGTTGATA
*
26971823 TTCTAATAGTTCACTCGATTTAAGAT-TGTCTGTCATTTTTAAGGTTCGCTT
255 TTCTAACAGTTCACTCGATTTAAGATATGTCTGTCATTTTTAAGGTTCGCTT
** * * *
26971874 GATTTAAGATTGAGACCTTCGATATTCTAATAGTTTGCTTGATTTAAGATCGCGGCTTTCATTTG
1 GATTTAAGATTGAGACCTTCGATATTCTAATAGTTCACTCGATTTAAGATCGCGACTGTCATTTG
* * * * *
26971939 TACGATTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATAGTTTATTCGATTTAAGATCGT
66 TACGATTCGCTCAATTTAAGATCGTGACCTTCAGTATTCTAACAGTTTACTCGATTGAAGATC-T
* * *
26972004 AACTATCATTTTTACGGTTCGCTCAATTTAAGATAGTGACCTTCAGTATTCTAACAATTTCCTTG
130 AACTATCATTTTTACGGTTCGCTCAATTTAAGATAGAGACCTTCAGTATTCTAACAAGTTCCTCG
26972069 ATTTAATATCACAACTGTTATTTTTAAGGTTCGCTCAATTTAAGATCTCAACAGTTGATATTCTA
195 ATTTAATATCACAACTGTTATTTTTAAGGTTCGCTCAATTTAAGATCTCAACAGTTGATATTCTA
* *
26972134 ACAGTTCACTTGATTTAAGATCATGTCTGTTATTT
260 ACAGTTCACTCGATTTAAGAT-ATGTCTGTCATTT
26972169 CTACAGTTCG
Statistics
Matches: 246, Mismatches: 40, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
304 2 0.01
305 181 0.74
306 51 0.21
307 1 0.00
308 11 0.04
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (306 bp):
GATTTAAGATTGAGACCTTCGATATTCTAATAGTTCACTCGATTTAAGATCGCGACTGTCATTTG
TACGATTCGCTCAATTTAAGATCGTGACCTTCAGTATTCTAACAGTTTACTCGATTGAAGATCTA
ACTATCATTTTTACGGTTCGCTCAATTTAAGATAGAGACCTTCAGTATTCTAACAAGTTCCTCGA
TTTAATATCACAACTGTTATTTTTAAGGTTCGCTCAATTTAAGATCTCAACAGTTGATATTCTAA
CAGTTCACTCGATTTAAGATATGTCTGTCATTTTTAAGGTTCGCTT
Found at i:26971974 original size:228 final size:230
Alignment explanation
Indices: 26971561--26972115 Score: 663
Period size: 228 Copynumber: 2.4 Consensus size: 230
26971551 TATTCTAACA
* *
26971561 GTTCACTCGATTTAAGATTGTGACCTTCGGTATTCTAATAGTTCACTCGATTTAAGATCGCGACT
1 GTTCGCTCGATTTAAGATTGTGACCTTCAGTATTCTAATAGTTCACTCGATTTAAGATC-CGACT
* * * *
26971626 GTCATTTTTATGGTTTGCTCAATTTAATATCGTGACCTTCAGTATTCTAACAGTTTGCTCGATTG
65 GTCATTTTTAAGGTTCGCTCAATTTAAGATCGAGACCTTCAGTATTCTAACAGTTTGCTCGATTG
* * * * * *
26971691 AATATTAAGACTGTTATTTTTACGGTTTGCTCGATTTAAGATCGAGACTTTCGGTATTCTAATAG
130 AAGATCAAGACTGTTATTTGTACGATTCGCTCGATTTAAGATCGAGACCTTCGGTATTCTAATAG
* *
26971756 TTCACTCGATTTAATATCATGAA-TTTCATTTTTA-G
195 TTCACTCGATTTAAGATCAT-AACTATCATTTTTACG
** * *
26971791 GTTCGCTCGATTTAAGATTGTGACCTTTTGTATTCTAATAGTTCACTCGATTTAAGAT-TGTCTG
1 GTTCGCTCGATTTAAGATTGTGACCTTCAGTATTCTAATAGTTCACTCGATTTAAGATCCGACTG
** * * * *
26971855 TCATTTTTAAGGTTCGCTTGATTTAAGATTGAGACCTTC-GATATTCTAATAGTTTGCTTGATTT
66 TCATTTTTAAGGTTCGCTCAATTTAAGATCGAGACCTTCAG-TATTCTAACAGTTTGCTCGATTG
** * *
26971919 AAGATCGCGGCT-TTCATTTGTACGATTCGCTCGATTTAAGATCGTGACCTTCGGTATTCTAATA
130 AAGATCAAGACTGTT-ATTTGTACGATTCGCTCGATTTAAGATCGAGACCTTCGGTATTCTAATA
* * *
26971983 GTTTATTCGATTTAAGATCGTAACTATCATTTTTACG
194 GTTCACTCGATTTAAGATCATAACTATCATTTTTACG
* * * * * * *
26972020 GTTCGCTCAATTTAAGATAGTGACCTTCAGTATTCTAACAATTTC-CTTGATTTAATATCACAAC
1 GTTCGCTCGATTTAAGATTGTGACCTTCAGTATTCTAA-TAGTTCACTCGATTTAAGATC-CGAC
*
26972084 TGTTATTTTTAAGGTTCGCTCAATTTAAGATC
64 TGTCATTTTTAAGGTTCGCTCAATTTAAGATC
26972116 TCAACAGTTG
Statistics
Matches: 273, Mismatches: 45, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
227 5 0.02
228 134 0.49
229 46 0.17
230 59 0.22
231 29 0.11
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (230 bp):
GTTCGCTCGATTTAAGATTGTGACCTTCAGTATTCTAATAGTTCACTCGATTTAAGATCCGACTG
TCATTTTTAAGGTTCGCTCAATTTAAGATCGAGACCTTCAGTATTCTAACAGTTTGCTCGATTGA
AGATCAAGACTGTTATTTGTACGATTCGCTCGATTTAAGATCGAGACCTTCGGTATTCTAATAGT
TCACTCGATTTAAGATCATAACTATCATTTTTACG
Found at i:26972111 original size:37 final size:36
Alignment explanation
Indices: 26972069--26972193 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 36
26972059 AATTTCCTTG
* *
26972069 ATTTAATATCACAACTGTTATTTTTAAGGTTCGCTCA
1 ATTTAAGATCACAACTGTTATTTCTAA-GTTCGCTCA
* * * **
26972106 ATTTAAGATCTCAACAGTTGATATTCTAACAGTTCACTTG
1 ATTTAAGATCACAACTGTT-AT-TTCT-A-AGTTCGCTCA
***
26972146 ATTTAAGATCATGTCTGTTATTTCTACAGTTCGCTCA
1 ATTTAAGATCACAACTGTTATTTCTA-AGTTCGCTCA
*
26972183 ATTTAATATCA
1 ATTTAAGATCA
26972194 TGACTTTCAT
Statistics
Matches: 68, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
37 35 0.51
38 6 0.09
39 5 0.07
40 21 0.31
41 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (36 bp):
ATTTAAGATCACAACTGTTATTTCTAAGTTCGCTCA
Found at i:26972194 original size:37 final size:36
Alignment explanation
Indices: 26972129--26972225 Score: 106
Period size: 37 Copynumber: 2.6 Consensus size: 36
26972119 ACAGTTGATA
* *
26972129 TTCTAACAGTTCACTTGATTTAAGATCATGTCTGTT-AT
1 TTCT-ACAGTTCAC-TAATTTAAGATCATGACT-TTCAT
* *
26972167 TTCTACAGTTCGCTCAATTTAATATCATGACTTTCAT
1 TTCTACAGTTCACT-AATTTAAGATCATGACTTTCAT
*
26972204 TTTTACAGTTCACTAATTTAAG
1 TTCTACAGTTCACTAATTTAAG
26972226 GTCGCGACCT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
36 10 0.20
37 36 0.72
38 4 0.08
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (36 bp):
TTCTACAGTTCACTAATTTAAGATCATGACTTTCAT
Found at i:26978760 original size:96 final size:96
Alignment explanation
Indices: 26978573--26978780 Score: 231
Period size: 96 Copynumber: 2.2 Consensus size: 96
26978563 GTGATTGGCC
* * * * *
26978573 CAAAGCCATTAGTAGCAGTGATATGATCGGTACACAACCATCAGTAACGGTAACATGATCAGCAC
1 CAAAGCCATCAGTAACAATGAAATGATCGGCACACAACCATCAGTAACGGTAACATGATCAGCAC
* * * *
26978638 AAAGCCATTAGTAGCAGTGATTTGATCAGCA
66 AAAGCCATCAATAACAGTGATATGATCAGCA
* * * * ** *
26978669 CACAGCCATCAGTAACAATGAAATGGTCGGCACACAACCATCGGTAACGGTAATATGATTGGTAC
1 CAAAGCCATCAGTAACAATGAAATGATCGGCACACAACCATCAGTAACGGTAACATGATCAGCAC
*
26978734 AAAGCCATCAATAAC-GAT-ACTATGATCGGCA
66 AAAGCCATCAATAACAG-TGA-TATGATCAGCA
26978765 CAAAGCCATCAGTAAC
1 CAAAGCCATCAGTAAC
26978781 GGTACTATGA
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
95 2 0.02
96 90 0.98
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (96 bp):
CAAAGCCATCAGTAACAATGAAATGATCGGCACACAACCATCAGTAACGGTAACATGATCAGCAC
AAAGCCATCAATAACAGTGATATGATCAGCA
Found at i:26978811 original size:32 final size:33
Alignment explanation
Indices: 26978564--26978812 Score: 192
Period size: 32 Copynumber: 7.8 Consensus size: 33
26978554 TACAGTAATG
* * * * *
26978564 TGATTGGCCCAAAGCCATTAGTAGCAGTGA-TA
1 TGATCGGCACAAAGCCATCAGTAACGGTGACTA
* *
26978596 TGATCGGTACACAA-CCATCAGTAACGGTAAC-A
1 TGATCGGCACA-AAGCCATCAGTAACGGTGACTA
* * * * *
26978628 TGATCAGCACAAAGCCATTAGTAGCAGTGA-TT
1 TGATCGGCACAAAGCCATCAGTAACGGTGACTA
* * ** *
26978660 TGATCAGCACACAGCCATCAGTAACAATGA-AA
1 TGATCGGCACAAAGCCATCAGTAACGGTGACTA
* * *
26978692 TGGTCGGCACACAA-CCATCGGTAACGGT-AATA
1 TGATCGGCACA-AAGCCATCAGTAACGGTGACTA
* * * *
26978724 TGATTGGTACAAAGCCATCAATAACGAT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACGGTGACTA
26978756 TGATCGGCACAAAGCCATCAGTAACGGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACGGTGACTA
*
26978788 TGATCGGAACAAAGCCATCAGTAAC
1 TGATCGGCACAAAGCCATCAGTAAC
26978813 ATCGCAGCAA
Statistics
Matches: 171, Mismatches: 39, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
31 5 0.03
32 163 0.95
33 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (33 bp):
TGATCGGCACAAAGCCATCAGTAACGGTGACTA
Found at i:26978844 original size:26 final size:26
Alignment explanation
Indices: 26978813--26978866 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
26978803 CATCAGTAAC
26978813 ATCGCAGCAAAGCTGCTAGCAATAGT
1 ATCGCAGCAAAGCTGCTAGCAATAGT
* *
26978839 ATCGCAGCAAAGTTGCTAGTAATAGT
1 ATCGCAGCAAAGCTGCTAGCAATAGT
26978865 AT
1 AT
26978867 ACGCGGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCTAGCAATAGT
Found at i:26986371 original size:16 final size:16
Alignment explanation
Indices: 26986352--26986384 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26986342 CTCCTTTTAG
26986352 GTTGTGGAATTTTTTT
1 GTTGTGGAATTTTTTT
26986368 GTTGTGGAATTTTTTT
1 GTTGTGGAATTTTTTT
26986384 G
1 G
26986385 GTAACATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.61
Consensus pattern (16 bp):
GTTGTGGAATTTTTTT
Found at i:26988022 original size:24 final size:25
Alignment explanation
Indices: 26987984--26988033 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
26987974 AATCTTTTAG
* *
26987984 AAACTAAATATAACTAAGTTAAATA
1 AAACTAAATAGAACTAAGTAAAATA
26988009 AAACT-AATAGAACTAAGTAAAATA
1 AAACTAAATAGAACTAAGTAAAATA
26988033 A
1 A
26988034 CAAAACCAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.62, C:0.08, G:0.06, T:0.24
Consensus pattern (25 bp):
AAACTAAATAGAACTAAGTAAAATA
Found at i:27001569 original size:20 final size:21
Alignment explanation
Indices: 27001544--27001583 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
27001534 GAGTTTTATT
27001544 TATTTTA-TGTACTAA-TTAGA
1 TATTTTAGTGT-CTAAGTTAGA
27001564 TATTTTAGTGTCTAAGTTAG
1 TATTTTAGTGTCTAAGTTAG
27001584 GACTGATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (21 bp):
TATTTTAGTGTCTAAGTTAGA
Found at i:27008021 original size:14 final size:14
Alignment explanation
Indices: 27008002--27008032 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
27007992 AATATAAATA
27008002 GGTTACACAATTAG
1 GGTTACACAATTAG
*
27008016 GGTTACACAATTTG
1 GGTTACACAATTAG
27008030 GGT
1 GGT
27008033 CGGGTCAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (14 bp):
GGTTACACAATTAG
Found at i:27015562 original size:7 final size:6
Alignment explanation
Indices: 27015517--27015583 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
27015507 GACCCCTTTT
* *
27015517 ATTAAA A-T-AA A-TAAA ACTAAC ATTAAA ATTAAA ATTAAA GATT-AA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA -ATTAAA
*
27015562 ATTGAA ATT--A ATTAAA ATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA
27015584 GACAAAGATA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
4 8 0.15
5 7 0.13
6 34 0.65
7 3 0.06
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (6 bp):
ATTAAA
Found at i:27024635 original size:45 final size:45
Alignment explanation
Indices: 27024586--27024764 Score: 202
Period size: 45 Copynumber: 4.0 Consensus size: 45
27024576 ATTCACACTG
* * *
27024586 TATTATCAACTTTTATTTGCATCGAA-TAGTGGTTTATCGACACCA
1 TATTATCAACTTTTATCTACATC-AAGTAGTGGTTTATCCACACCA
* *
27024631 TATTAGCAACTTTTATCTACACCAAGTAGTGGTTTATCCACACCA
1 TATTATCAACTTTTATCTACATCAAGTAGTGGTTTATCCACACCA
* * * *
27024676 TATT-TGTAACTTTTATCTACATCAAGTAGTGGTTTATCCATATCG
1 TATTAT-CAACTTTTATCTACATCAAGTAGTGGTTTATCCACACCA
* * *
27024721 TATTAGT-AGCTTTTATCTACATCAATTAGTGGTCTATCCACACC
1 TATTA-TCAACTTTTATCTACATCAAGTAGTGGTTTATCCACACC
27024765 GTACTAGCAA
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
44 2 0.02
45 111 0.97
47 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (45 bp):
TATTATCAACTTTTATCTACATCAAGTAGTGGTTTATCCACACCA
Found at i:27024652 original size:24 final size:23
Alignment explanation
Indices: 27024618--27024696 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 23
27024608 CGAATAGTGG
*
27024618 TTTATCGACACCATATTAGCAACT
1 TTTATCTACACCATATTAG-AACT
* ***
27024642 TTTATCTACACCA-AGTAG-TGG
1 TTTATCTACACCATATTAGAACT
* *
27024663 TTTATCCACACCATATTTGTAACT
1 TTTATCTACACCATATTAG-AACT
27024687 TTTATCTACA
1 TTTATCTACA
27024697 TCAAGTAGTG
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
21 12 0.30
22 3 0.08
23 4 0.10
24 21 0.52
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (23 bp):
TTTATCTACACCATATTAGAACT
Found at i:27024668 original size:21 final size:21
Alignment explanation
Indices: 27024642--27024713 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
27024632 ATTAGCAACT
27024642 TTTATCTACACCAAGTAGTGG
1 TTTATCTACACCAAGTAGTGG
* * * **
27024663 TTTATCCACACCATATTTGTAACT
1 TTTATCTACACCA-AGTAGT--GG
*
27024687 TTTATCTACATCAAGTAGTGG
1 TTTATCTACACCAAGTAGTGG
27024708 TTTATC
1 TTTATC
27024714 CATATCGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
21 18 0.49
22 4 0.11
23 4 0.11
24 11 0.30
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.40
Consensus pattern (21 bp):
TTTATCTACACCAAGTAGTGG
Found at i:27024725 original size:90 final size:90
Alignment explanation
Indices: 27024593--27024764 Score: 229
Period size: 90 Copynumber: 1.9 Consensus size: 90
27024583 CTGTATTATC
* * *
27024593 AACTTTTATTTGCATCGAATAGTGGTTTATCGACACCATATTAGCAACTTTTATCTACACCAAGT
1 AACTTTTATCTACATCGAATAGTGGTTTATCCACACCATATTAGCAACTTTTATCTACACCAAGT
*
27024658 AGTGGTTTATCCACACCATATTTGT
66 AGTGGTCTATCCACACCATATTTGT
* * * * * * *
27024683 AACTTTTATCTACATC-AAGTAGTGGTTTATCCATATCGTATTAGTAGCTTTTATCTACATCAAT
1 AACTTTTATCTACATCGAA-TAGTGGTTTATCCACACCATATTAGCAACTTTTATCTACACCAAG
27024747 TAGTGGTCTATCCACACC
65 TAGTGGTCTATCCACACC
27024765 GTACTAGCAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
89 2 0.03
90 68 0.97
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.38
Consensus pattern (90 bp):
AACTTTTATCTACATCGAATAGTGGTTTATCCACACCATATTAGCAACTTTTATCTACACCAAGT
AGTGGTCTATCCACACCATATTTGT
Found at i:27030759 original size:27 final size:27
Alignment explanation
Indices: 27030728--27030820 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
27030718 GTGTTTAGGA
27030728 TTAGGGTTTTTGAAAAAAAATTAGAGT
1 TTAGGGTTTTTGAAAAAAAATTAGAGT
*
27030755 TTAGGGTTTTTGAAAAAAATTTA-AGGT
1 TTAGGGTTTTTGAAAAAAAATTAGA-GT
*** *
27030782 TTAGGGTTTAAAAAAAATAAATTTGAGT
1 TTAGGGTTTTTGAAAAA-AAATTAGAGT
27030810 TTAGGGTTTTT
1 TTAGGGTTTTT
27030821 AATTGGTAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 38 0.69
28 15 0.27
29 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (27 bp):
TTAGGGTTTTTGAAAAAAAATTAGAGT
Found at i:27030848 original size:36 final size:37
Alignment explanation
Indices: 27030808--27030911 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 37
27030798 ATAAATTTGA
*
27030808 GTTTAGGGTTTTTAATTGGTAAGTGATATGTTTAG-G
1 GTTTAGGGTTTTTAATTGGTAAGTGATGTGTTTAGAG
**** * * *
27030844 GTTTAGGGTTTTTAAAAAATAAAT-TTGGGTTTAGAG
1 GTTTAGGGTTTTTAATTGGTAAGTGATGTGTTTAGAG
*
27030880 TTTTAGGGTTTTTAATTGGTAAGTGATGTGTT
1 GTTTAGGGTTTTTAATTGGTAAGTGATGTGTT
27030912 CTGAAAAACT
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
35 7 0.14
36 38 0.76
37 5 0.10
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (37 bp):
GTTTAGGGTTTTTAATTGGTAAGTGATGTGTTTAGAG
Found at i:27031581 original size:10 final size:9
Alignment explanation
Indices: 27031566--27031590 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27031556 ACCTAAATAA
27031566 TTTTTTTCT
1 TTTTTTTCT
27031575 TTTTTTTCT
1 TTTTTTTCT
27031584 TTTTTTT
1 TTTTTTT
27031591 AACCTTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:27034172 original size:14 final size:15
Alignment explanation
Indices: 27034153--27034181 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27034143 TCACGAAACT
27034153 TTCACACAT-ATAAA
1 TTCACACATAATAAA
27034167 TTCACACATAATAAA
1 TTCACACATAATAAA
27034182 CACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:27034421 original size:86 final size:87
Alignment explanation
Indices: 27034319--27034493 Score: 271
Period size: 87 Copynumber: 2.0 Consensus size: 87
27034309 GCAAGATGCA
* * *
27034319 CTGTTAGCAAAAGTACTGAAAAAAGCTCCCAGCTGG-CGCTCTTTTTGTACAATAGTTTCTGAAA
1 CTGTCAGCAAAAGTACTAAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAATAGTTTCTGAAA
27034383 AAATAACTTTGAGAAGATGTTT
66 AAATAACTTTGAGAAGATGTTT
* * * *
27034405 CTGTCAGCAAAAGTACTAAAAAAATCTCCCAACTGGATGCTCTTTTTGTACAGTAGTTTCTGAAC
1 CTGTCAGCAAAAGTACTAAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAATAGTTTCTGAAA
*
27034470 AAATAATTTTGAGAAGATGTTT
66 AAATAACTTTGAGAAGATGTTT
27034492 CT
1 CT
27034494 AAAAGAATAG
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 32 0.40
87 48 0.60
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (87 bp):
CTGTCAGCAAAAGTACTAAAAAAAGCTCCCAACTGGACGCTCTTTTTGTACAATAGTTTCTGAAA
AAATAACTTTGAGAAGATGTTT
Found at i:27034541 original size:126 final size:125
Alignment explanation
Indices: 27034405--27034711 Score: 461
Period size: 126 Copynumber: 2.4 Consensus size: 125
27034395 GAAGATGTTT
*
27034405 CTGTCAGCAAAAGTACTAAAAAAATCTCCCAACTGGATGCTCTTTTTGTACAGTAGTTTCTGAAC
1 CTGTCAGCAAAAGTACTAAAAAAA-CTCCCAACTGGATGCTCTTTTTGTACAGTAGTTTCTGAAA
27034470 AAATAATTTTGAGAAGATGTTTCTAAAAGAATAGGTAGAAAAACGCTTCAAACAGGATGCA
65 AAATAATTTTGAGAAGATGTTTCTAAAAGAATAGGTAGAAAAACGCTTCAAACAGGATGCA
* * * * * *
27034531 CTGTCAGCAAAAGTACTGAAATAAACTCCTAGCTTGAAGCTCTTTTTGTATAGTAGTTTCTGAAA
1 CTGTCAGCAAAAGTACT-AAAAAAACTCCCAACTGGATGCTCTTTTTGTACAGTAGTTTCTGAAA
* * **
27034596 AAATAATTTTGAGAAGATGTTTCTAAAAGAATAGGTTGAAAAATGCTTCAAGTAGGATGCA
65 AAATAATTTTGAGAAGATGTTTCTAAAAGAATAGGTAGAAAAACGCTTCAAACAGGATGCA
* * *
27034657 CTGTTAGCAAAAGTACTGAGAAAACCTCCCAACTGGATGCTCTTTTTGTACAGTA
1 CTGTCAGCAAAAGTACT-AAAAAAACTCCCAACTGGATGCTCTTTTTGTACAGTA
27034712 CATCCTACTT
Statistics
Matches: 160, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
126 154 0.96
127 6 0.04
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (125 bp):
CTGTCAGCAAAAGTACTAAAAAAACTCCCAACTGGATGCTCTTTTTGTACAGTAGTTTCTGAAAA
AATAATTTTGAGAAGATGTTTCTAAAAGAATAGGTAGAAAAACGCTTCAAACAGGATGCA
Found at i:27038327 original size:39 final size:39
Alignment explanation
Indices: 27038270--27038348 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
27038260 TATTAAAGTC
*
27038270 TGTTTATTAAGGGTTGTGTAATAGCTTATAATATTTAGA
1 TGTTTATTAAGGGATGTGTAATAGCTTATAATATTTAGA
27038309 TGTTTATTAAGGGATGTGTAATAGCTTATAATATTTAGA
1 TGTTTATTAAGGGATGTGTAATAGCTTATAATATTTAGA
27038348 T
1 T
27038349 AAAGTGTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.46
Consensus pattern (39 bp):
TGTTTATTAAGGGATGTGTAATAGCTTATAATATTTAGA
Found at i:27038896 original size:33 final size:32
Alignment explanation
Indices: 27038824--27038896 Score: 74
Period size: 33 Copynumber: 2.2 Consensus size: 32
27038814 ATTTTTAAAT
* * * *
27038824 GTAAGACCATAGCTGGGCTATGGCATTTTAAT
1 GTAAGACCATAACTGGGCTATGGCACTTGAAC
* *
27038856 GAAAAGACCATAACTGGGTTATGGCACCTTGAAC
1 G-TAAGACCATAACTGGGCTATGGCA-CTTGAAC
27038890 GTAAGAC
1 GTAAGAC
27038897 TATGGTTGGA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
32 1 0.03
33 26 0.81
34 5 0.16
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (32 bp):
GTAAGACCATAACTGGGCTATGGCACTTGAAC
Found at i:27049602 original size:33 final size:32
Alignment explanation
Indices: 27049558--27049682 Score: 108
Period size: 33 Copynumber: 3.8 Consensus size: 32
27049548 TAGATACATG
*
27049558 TGTAAGACCATAGTTGGGCTATGGCATTCTGA
1 TGTAAGACCATAGTTGGGCTATGGCATACTGA
** * **
27049590 TGATAAGACCATAACTGGGTTATGGCACTACAAA
1 TG-TAAGACCATAGTTGGGCTATGGCA-TACTGA
* * * *
27049624 TGTAAGACCATGGTAGGGCCATGGCAATGCATG-
1 TGTAAGACCATAGTTGGGCTATGGC-ATAC-TGA
*
27049657 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGTTGGGCTATGGCA
27049683 CAAAAAGAAT
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
32 3 0.04
33 61 0.87
34 6 0.09
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (32 bp):
TGTAAGACCATAGTTGGGCTATGGCATACTGA
Found at i:27049680 original size:66 final size:66
Alignment explanation
Indices: 27049558--27049683 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
27049548 TAGATACATG
* * * **
27049558 TGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGGCACTACAA
1 TGTAAGACCATAGTAGGGCCATGGCATGCTGATGATAAGACCATAACTGGACTATGGCACTACAA
27049623 A
66 A
* **
27049624 TGTAAGACCATGGTAGGGCCATGGCAATGCATG-TG-TAAGACCATAGTTGGACTATGGCAC
1 TGTAAGACCATAGTAGGGCCATGGC-ATGC-TGATGATAAGACCATAACTGGACTATGGCAC
27049684 AAAAAGAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
66 43 0.86
67 5 0.10
68 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (66 bp):
TGTAAGACCATAGTAGGGCCATGGCATGCTGATGATAAGACCATAACTGGACTATGGCACTACAA
A
Found at i:27052476 original size:2 final size:2
Alignment explanation
Indices: 27052471--27052496 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27052461 ATGAAAAAAA
27052471 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
27052497 GAAATAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27056433 original size:89 final size:89
Alignment explanation
Indices: 27056269--27056496 Score: 325
Period size: 89 Copynumber: 2.6 Consensus size: 89
27056259 CTTGAGGGTG
* * * * * *
27056269 CAAAAAG-CCCTCAAACTTTTTCAAAAAAAGCAATTAAACTCCTACCCTTTTTTTTGCACTCATT
1 CAAAAAGACCCTCAAACCTTTTCAAAAAAACCAATTAAGCCCCT--GCTTTTTTTTGCACTCAAT
* *
27056333 TGGGTACTTGAACTTTCAAAATGCAT
64 TGGGTACTTGAAATTTCAAAATACAT
27056359 CAAAAAGACCCTCAAACCTTTTCAAAAAAACCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
1 CAAAAAGACCCTCAAACCTTTTCAAAAAAACCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
27056424 GGTACTTGAAATTTCAAAATACAT
66 GGTACTTGAAATTTCAAAATACAT
***
27056448 CAAAAAGACCCTCAAA-CTTAAAAAAAAAACCAATTAAGCCCCTGCTTTT
1 CAAAAAGACCCTCAAACCTTTTCAAAAAAACCAATTAAGCCCCTGCTTTT
27056497 ATTAAAAATT
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
88 30 0.24
89 57 0.45
90 7 0.06
91 32 0.25
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.29
Consensus pattern (89 bp):
CAAAAAGACCCTCAAACCTTTTCAAAAAAACCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
GGTACTTGAAATTTCAAAATACAT
Found at i:27056545 original size:16 final size:16
Alignment explanation
Indices: 27056513--27056614 Score: 53
Period size: 18 Copynumber: 5.8 Consensus size: 16
27056503 AATTAGAAAA
27056513 AAAATTATAAAAAATT
1 AAAATTATAAAAAATT
*
27056529 AAAATATATAAATATTATT
1 AAAAT-TATAAA-A-AATT
* *
27056548 AAATTTTAATAAAAATTTT
1 AAA-ATT-ATAAAAA-ATT
*
27056567 AAATATTA-AAAAATTGT
1 AAA-ATTATAAAAAAT-T
*
27056584 AAAAATTTTAAAAAATTAT
1 -AAAATTATAAAAAA-T-T
27056603 AAAATTATAAAA
1 AAAATTATAAAA
27056615 TATATAGAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
16 7 0.10
17 15 0.22
18 21 0.31
19 18 0.27
20 6 0.09
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (16 bp):
AAAATTATAAAAAATT
Found at i:27056586 original size:17 final size:17
Alignment explanation
Indices: 27056520--27056620 Score: 64
Period size: 19 Copynumber: 5.7 Consensus size: 17
27056510 AAAAAAATTA
27056520 TAAAAAATTA-AAATA-
1 TAAAAAATTATAAATAT
* *
27056535 TATAAATATTATTAAATTT
1 TA-AAAAATTA-TAAATAT
*
27056554 TAATAAAAATTTTAAATAT
1 T-A-AAAAATTATAAATAT
* *
27056573 TAAAAAATTGTAAAAATTT
1 TAAAAAA-T-TATAAATAT
27056592 TAAAAAATTATAAA-AT
1 TAAAAAATTATAAATAT
*
27056608 TATAAAATATATA
1 TAAAAAAT-TATA
27056621 GAAATATAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
15 2 0.03
16 15 0.22
17 14 0.21
18 7 0.10
19 21 0.31
20 8 0.12
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (17 bp):
TAAAAAATTATAAATAT
Found at i:27056589 original size:19 final size:19
Alignment explanation
Indices: 27056567--27056641 Score: 66
Period size: 19 Copynumber: 4.1 Consensus size: 19
27056557 TAAAAATTTT
*
27056567 AAATATTAAAAAATTGTAA
1 AAATATTAAAAAATTATAA
*
27056586 AAATTTTAAAAAATTATAA
1 AAATATTAAAAAATTATAA
* * *
27056605 AATTA-TAAAATA-TATAG
1 AAATATTAAAAAATTATAA
**
27056622 AAATA-TAAAATTTTATAA
1 AAATATTAAAAAATTATAA
27056640 AA
1 AA
27056642 TTTTATAAAG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
17 14 0.30
18 12 0.26
19 20 0.43
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
AAATATTAAAAAATTATAA
Found at i:27056601 original size:27 final size:26
Alignment explanation
Indices: 27056556--27056614 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
27056546 TTAAATTTTA
*
27056556 ATAAAAATTTTAAATATTAAAAAATT
1 ATAAAAATTTTAAAAATTAAAAAATT
* *
27056582 GTAAAAATTTTAAAAAATTATAAAATT
1 ATAAAAATTTT-AAAAATTAAAAAATT
27056609 ATAAAA
1 ATAAAA
27056615 TATATAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
ATAAAAATTTTAAAAATTAAAAAATT
Found at i:27056625 original size:10 final size:8
Alignment explanation
Indices: 27056513--27056643 Score: 59
Period size: 8 Copynumber: 14.8 Consensus size: 8
27056503 AATTAGAAAA
27056513 AAAATTAT
1 AAAATTAT
*
27056521 AAAA-AATT
1 AAAATTA-T
27056529 AAAATATAT
1 AAAAT-TAT
27056538 AAATATTATT
1 AAA-ATTA-T
*
27056548 AAATTTTAAT
1 AAA-ATT-AT
*
27056558 AAAAATTTT
1 -AAAATTAT
*
27056567 AAATATTAA
1 AAA-ATTAT
*
27056576 AAAATTGT
1 AAAATTAT
*
27056584 AAAAATTTTAA
1 -AAAA--TTAT
27056595 AAAATTAT
1 AAAATTAT
27056603 AAAATTAT
1 AAAATTAT
27056611 AAAATATAT
1 AAAAT-TAT
27056620 AGAAA-TAT
1 A-AAATTAT
27056628 AAAATTTTAT
1 AAAA--TTAT
27056638 AAAATT
1 AAAATT
27056644 TTATAAAGTT
Statistics
Matches: 95, Mismatches: 12, Indels: 32
0.68 0.09 0.23
Matches are distributed among these distances:
7 4 0.04
8 37 0.39
9 21 0.22
10 27 0.28
11 6 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
AAAATTAT
Found at i:27056628 original size:17 final size:16
Alignment explanation
Indices: 27056513--27056643 Score: 59
Period size: 17 Copynumber: 7.4 Consensus size: 16
27056503 AATTAGAAAA
*
27056513 AAAATTATAAAA-AATT
1 AAAATTATAAAATTA-T
27056529 AAAATATATAAATATTATT
1 AAAAT-TATAAA-ATTA-T
* *
27056548 AAATTTTAATAAAAATTTT
1 AAA-ATT-AT-AAAATTAT
* *
27056567 AAATATTAAAAAATTGT
1 AAA-ATTATAAAATTAT
*
27056584 AAAAATTTTAAAAAATTAT
1 -AAAA--TTATAAAATTAT
27056603 AAAATTATAAAATATAT
1 AAAATTATAAAAT-TAT
27056620 AGAAA-TATAAAATTTTAT
1 A-AAATTATAAAA--TTAT
27056638 AAAATT
1 AAAATT
27056644 TTATAAAGTT
Statistics
Matches: 93, Mismatches: 8, Indels: 26
0.73 0.06 0.20
Matches are distributed among these distances:
16 13 0.14
17 28 0.30
18 17 0.18
19 26 0.28
20 6 0.06
21 3 0.03
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATTATAAAATTAT
Found at i:27056644 original size:10 final size:10
Alignment explanation
Indices: 27056533--27056650 Score: 60
Period size: 10 Copynumber: 12.6 Consensus size: 10
27056523 AAAATTAAAA
*
27056533 TATATAAATAT
1 TATA-AAATTT
*
27056544 TATTAAATTT
1 TATAAAATTT
*
27056554 TAATAAAAATT
1 T-ATAAAATTT
*
27056565 T-T-AAATAT
1 TATAAAATTT
* *
27056573 TAAAAAATTG
1 TATAAAATTT
27056583 TA-AAAATTT
1 TATAAAATTT
*
27056592 TA-AAAA-AT
1 TATAAAATTT
27056600 TATAAAA--T
1 TATAAAATTT
*
27056608 TATAAAA-TA
1 TATAAAATTT
27056617 TATAGAAA---
1 TATA-AAATTT
27056625 TATAAAATTT
1 TATAAAATTT
27056635 TATAAAATTT
1 TATAAAATTT
27056645 TATAAA
1 TATAAA
27056651 GTTGTAAGAA
Statistics
Matches: 86, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
7 3 0.03
8 20 0.23
9 21 0.24
10 31 0.36
11 11 0.13
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (10 bp):
TATAAAATTT
Found at i:27056864 original size:19 final size:19
Alignment explanation
Indices: 27056828--27056863 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
27056818 ATATTTTTAT
27056828 TAAAATTTAATAAATTTTC
1 TAAAATTTAATAAATTTTC
27056847 TAAAATTTAAT-AATTTT
1 TAAAATTTAATAAATTTT
27056864 TTTATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TAAAATTTAATAAATTTTC
Found at i:27057068 original size:89 final size:87
Alignment explanation
Indices: 27056896--27057068 Score: 208
Period size: 89 Copynumber: 2.0 Consensus size: 87
27056886 AATAAGTGCA
* *
27056896 AGGGCTTAATTGCTTTTTTGAAAAATTTTGAGGATCTTTTTGATGCGTTTTGAAAGTTCAAGTAG
1 AGGGCTTAATTGCTTTTTTGAAAAAGTTTGAGGATCTTTTTGATGCATTTTGAAAGTTCAAGTAG
* *
27056961 CTAATTTAGTAGGGAAAAAAACT
66 CTAATTAAGTA-GCAAAAAAACT
* * *
27056984 AGGGTCTTAATTGCTTTTTTTAACAAGTTTGAGGGGGTCCTTTTT-ATGCATTTTGAAAGTTCAA
1 AGGG-CTTAATTGCTTTTTTGAAAAAGTTTGA--GGAT-CTTTTTGATGCATTTTGAAAGTTCAA
27057048 GT-GCTCAATTAAGT-GCAAAAA
62 GTAGCT-AATTAAGTAGCAAAAA
27057069 TAAACGAGGG
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
88 4 0.05
89 30 0.41
90 3 0.04
91 30 0.41
92 6 0.08
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (87 bp):
AGGGCTTAATTGCTTTTTTGAAAAAGTTTGAGGATCTTTTTGATGCATTTTGAAAGTTCAAGTAG
CTAATTAAGTAGCAAAAAAACT
Found at i:27057090 original size:3 final size:3
Alignment explanation
Indices: 27057082--27057111 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
27057072 ACGAGGGACT
27057082 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
27057112 GTTTGAGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:27058728 original size:15 final size:15
Alignment explanation
Indices: 27058710--27058743 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27058700 ATTTAAATGC
27058710 TGAAAAAATAAGTAT
1 TGAAAAAATAAGTAT
**
27058725 TGAAAATTTAAGTAT
1 TGAAAAAATAAGTAT
27058740 TGAA
1 TGAA
27058744 CTTAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (15 bp):
TGAAAAAATAAGTAT
Found at i:27060094 original size:22 final size:22
Alignment explanation
Indices: 27060066--27060121 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
27060056 TTCCACTTTT
27060066 TCAATTCACTCTCAACTC-TCTC
1 TCAATTCACTCTCAA-TCATCTC
*
27060088 TCAATTCATTCTCAATCATCTC
1 TCAATTCACTCTCAATCATCTC
* *
27060110 TCAGTTCTCTCT
1 TCAATTCACTCT
27060122 TAATTCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.21, C:0.36, G:0.02, T:0.41
Consensus pattern (22 bp):
TCAATTCACTCTCAATCATCTC
Found at i:27061467 original size:22 final size:22
Alignment explanation
Indices: 27061420--27061467 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
27061410 AGTATACATA
**
27061420 TTTTGAAAATTTATTTTCAATT
1 TTTTGAAAATTTATTTTCAACG
27061442 TTTTGAAATATTTATTTT-AACG
1 TTTTGAAA-ATTTATTTTCAACG
27061464 TTTT
1 TTTT
27061468 TAGTATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTTGAAAATTTATTTTCAACG
Found at i:27061467 original size:23 final size:22
Alignment explanation
Indices: 27061420--27061468 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
27061410 AGTATACATA
*
27061420 TTTTGAAAATTTATTTTCAATT
1 TTTTGAAAATTTATTTTCAAGT
27061442 TTTTGAAATATTTATTTT-AACGT
1 TTTTGAAA-ATTTATTTTCAA-GT
27061465 TTTT
1 TTTT
27061469 AGTATTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (22 bp):
TTTTGAAAATTTATTTTCAAGT
Done.