Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68311261
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 408745 characters in sequence are not A, C, G, or T
File 98 of 226
Found at i:30594992 original size:20 final size:20
Alignment explanation
Indices: 30594951--30594993 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
30594941 AAATCAGCTC
* *
30594951 ATTTGAGCTTCTTTCAGCTT
1 ATTTGAGCTTATTTCAACTT
*
30594971 ATTTGAGCTTATTTCAATTT
1 ATTTGAGCTTATTTCAACTT
30594991 ATT
1 ATT
30594994 CCCAGCTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (20 bp):
ATTTGAGCTTATTTCAACTT
Found at i:30600731 original size:12 final size:12
Alignment explanation
Indices: 30600714--30600757 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
30600704 TTCCATTTTT
30600714 ATTTTTATTATA
1 ATTTTTATTATA
30600726 ATTTTTAGTT-TA
1 ATTTTTA-TTATA
30600738 ATTTTTACATTATA
1 ATTTTT--ATTATA
30600752 ATTTTT
1 ATTTTT
30600758 CTTTTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.54
13 4 0.14
14 9 0.32
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (12 bp):
ATTTTTATTATA
Found at i:30600763 original size:26 final size:24
Alignment explanation
Indices: 30600690--30600763 Score: 71
Period size: 26 Copynumber: 3.0 Consensus size: 24
30600680 TGAACACTCG
*
30600690 ATTTTTA-T-TAATTTTTCCATTTTT
1 ATTTTTATTATAATTTTT-C-TTTTA
**
30600714 ATTTTTATTATAATTTTTAGTTTA
1 ATTTTTATTATAATTTTTCTTTTA
30600738 ATTTTTACATTATAATTTTTCTTTTA
1 ATTTTT--ATTATAATTTTTCTTTTA
30600764 TTTGTTTCTG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
24 16 0.39
25 1 0.02
26 24 0.59
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.68
Consensus pattern (24 bp):
ATTTTTATTATAATTTTTCTTTTA
Found at i:30603225 original size:43 final size:42
Alignment explanation
Indices: 30603152--30603315 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 42
30603142 CAAAAAGCTC
* * * *
30603152 ATACAATGCCAACGTCCCAGAC-GTGCTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACACGTAATCAA
* * *
30603194 ATAACGATGCCACTGTCCCAGATAGGGTCTTACACGTAATCAT
1 AT-ACGATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAA
* * *
30603237 ATACGATGTCAATGTCCCAGACATGGTCTTACACATAAATCGCAA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACACGT-AAT--CAA
* * *
30603282 AT-CGATGCCAACGTCCCTGAC-GTGCTCTTACACG
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACACG
30603316 ATATCATATA
Statistics
Matches: 97, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 31 0.32
43 36 0.37
44 26 0.27
45 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAA
Found at i:30605063 original size:16 final size:15
Alignment explanation
Indices: 30605002--30605070 Score: 63
Period size: 16 Copynumber: 4.6 Consensus size: 15
30604992 GACCATTGAG
* *
30605002 TTTATTTTTTTTCTT
1 TTTAGTTTTTTTATT
30605017 TTTAGATTTTTTTATT
1 TTTAG-TTTTTTTATT
*
30605033 TTT--TTATTGTTATT
1 TTTAGTT-TTTTTATT
30605047 TTTAGTTCTTTTTATT
1 TTTAGTT-TTTTTATT
30605063 TTTA-TTTT
1 TTTAGTTTT
30605071 CTTAGCCTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
13 2 0.04
14 12 0.27
15 6 0.13
16 25 0.56
ACGTcount: A:0.13, C:0.03, G:0.04, T:0.80
Consensus pattern (15 bp):
TTTAGTTTTTTTATT
Found at i:30606119 original size:19 final size:19
Alignment explanation
Indices: 30606095--30606131 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
30606085 ATAAATACCC
30606095 ATTAGAAGAAGACATAAGG
1 ATTAGAAGAAGACATAAGG
30606114 ATTAGAAGAAGACATAAG
1 ATTAGAAGAAGACATAAG
30606132 AGGGTAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.24, T:0.16
Consensus pattern (19 bp):
ATTAGAAGAAGACATAAGG
Found at i:30607503 original size:98 final size:98
Alignment explanation
Indices: 30607329--30607525 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
30607319 GTACAATAAA
*
30607329 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
30607394 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
30607427 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
30607492 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
30607525 A
1 A
30607526 TTATTTTTTA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:30608222 original size:23 final size:24
Alignment explanation
Indices: 30608194--30608247 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 24
30608184 ATATACATAT
*
30608194 AAATAT-GAAAATATTCTTTAAAA
1 AAATATAGAAAATATTCGTTAAAA
30608217 AAATATAGGAAAATATTCGTT-AAA
1 AAATATA-GAAAATATTCGTTAAAA
30608241 AAATATA
1 AAATATA
30608248 CATGTACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 6 0.21
24 10 0.36
25 12 0.43
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (24 bp):
AAATATAGAAAATATTCGTTAAAA
Found at i:30608246 original size:24 final size:25
Alignment explanation
Indices: 30608200--30608247 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
30608190 ATATAAATAT
*
30608200 GAAAATATTCTTTAAAAAAATATAG
1 GAAAATATTCGTTAAAAAAATATAG
30608225 GAAAATATTCGTT-AAAAAATATA
1 GAAAATATTCGTTAAAAAAATATA
30608248 CATGTACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.31
Consensus pattern (25 bp):
GAAAATATTCGTTAAAAAAATATAG
Found at i:30609028 original size:19 final size:19
Alignment explanation
Indices: 30609004--30609116 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
30608994 AATCATATAT
30609004 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
30609023 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
30609042 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
30609061 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
30609082 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
30609101 TCTGAGATTGCATATC
1 TCTAAGATTGCATATC
30609117 CTCAAAAATT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
19 67 0.80
21 17 0.20
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30609091 original size:40 final size:40
Alignment explanation
Indices: 30609004--30609115 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
30608994 AATCATATAT
30609004 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
30609042 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
** *
30609082 TCTTGGATTGCATATCATATCTGAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
30609116 CCTCAAAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 28 0.41
40 41 0.59
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:30609341 original size:44 final size:44
Alignment explanation
Indices: 30609292--30610020 Score: 459
Period size: 44 Copynumber: 16.8 Consensus size: 44
30609282 TGCCATCTTC
* *
30609292 AGTCTGCCCCACTGCAACTTCA-GGAGGATAGGACTTGCTTACTT
1 AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTT
* * * *
30609336 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT
* * * * *
30609378 A-TCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTGAGGTT--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTT
* * * *
30609420 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC-T--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTTACTT
* *
30609464 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT
30609508 CAGTCTGC-CCTACTGCAACTT-A-GGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCC-ACTGCAACTTCAGGGA-GATAAGACTTGCTTACTT
* * * *
30609552 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT
* * * * *
30609594 A-TCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTGAGGTT--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTT
* * * * * **
30609636 AATCCGCTCCACTGCAACTTTAGGGAGAT-AGAATT-ATCGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-TAC-TT
* *
30609680 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT
*
30609724 CAGCCTGC-CCTACTGCAACTTCA-GGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCC-ACTGCAACTTCAGGGA-GATAAGACTTGCTTACTT
* * * *
30609769 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT
** * * * *
30609811 A-TCTGCT-CTTTGCAACTTTAGAGAGATAAGATCTGAGGTT--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTT
* * * * * *
30609853 AATCCGTTCCACTACAACTTCAGGGAGATAGGATTATCGGC-T--TT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTTACTT
* * *
30609897 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT
*
30609941 CAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTT
*
30609986 AGTCTGCTCCACTGCAACTTCAGAGAGATAAGACT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
30610021 AGATGCGATA
Statistics
Matches: 545, Mismatches: 87, Indels: 106
0.74 0.12 0.14
Matches are distributed among these distances:
40 63 0.12
41 28 0.05
42 13 0.02
43 50 0.09
44 285 0.52
45 104 0.19
46 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (44 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT
Found at i:30610141 original size:217 final size:217
Alignment explanation
Indices: 30609282--30610104 Score: 1495
Period size: 217 Copynumber: 3.8 Consensus size: 217
30609272 TAGGAATTAC
*
30609282 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAGGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
30609347 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
30609412 GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
131 GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
30609477 GCAACTTCAGGGAGATAAGACT
196 GCAACTTCAGGGAGATAAGACT
*
30609499 TGCCATCTTCAGTCTGCCCTACTGCAACTT-AGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
30609563 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
* *
30609628 GAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGAATTATCGGCTTTAATCTGCTCCACT
131 GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
30609693 GCAACTTCAGGGAGATAAGACT
196 GCAACTTCAGGGAGATAAGACT
* *
30609715 TGCCATCTTCAGCCTGCCCTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
30609780 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTTTGCAACTTTAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
* * *
30609845 GAGGTTTTAATCCGTTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACT
131 GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
30609910 GCAACTTCAGGGAGATAAGACT
196 GCAACTTCAGGGAGATAAGACT
30609932 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
* * * * *
30609997 CTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTTTTTGCAACTTCAGAGAGATAAGATCT
66 CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
*
30610062 GAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATT
131 GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
30610105 TACAATCTTC
Statistics
Matches: 585, Mismatches: 20, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
216 212 0.36
217 373 0.64
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCT
GAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
GCAACTTCAGGGAGATAAGACT
Found at i:30610190 original size:433 final size:431
Alignment explanation
Indices: 30609295--30610150 Score: 1365
Period size: 433 Copynumber: 2.0 Consensus size: 431
30609285 CATCTTCAGT
* *
30609295 CTGCCCCACTGCAACTTCAGGAGGATAGGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG
1 CTGCCCCACT-CAACTT-AGGAAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG
30609360 GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCC
64 GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCC
* *
30609425 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGA
129 GCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACTGCAACTTCAGGGA
*
30609490 GATAAGACTTGCCATCTTCAGTCTGCCCTACTGCAACTTAGGAGGATAAGACTTGCTTACTTAGT
194 GATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTAGGAGGATAAGACTTGCTTACTTAGT
* * *
30609555 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGA
259 CTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAGAGAGA
* * * * *
30609620 TAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGAATTATCGGCTTTAATCT
324 TAAGATCTGAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGAATTATCAGCTTCAACCT
* * * *
30609685 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGC
389 GCTCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAAC
* *
30609728 CTGCCCTACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG
1 CTGCCCCACT-CAACTT-AGGAAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG
*
30609793 GAGATAAGACTAGATGCGATCTGCTCTTTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCC
64 GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCC
*
30609858 GTTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACTGCAACTTCAGGGA
129 GCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACTGCAACTTCAGGGA
30609923 GATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
194 GATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTT-AGGAGGATAAGACTTGCTTACTTAG
* *
30609988 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTTTTTGCAACTTCAGAGAG
258 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAGAGAG
* *
30610053 ATAAGATCTGAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATT-TACAATCTTCAA
323 ATAAGATCTGAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGAATTAT-C-AGCTTCAA
* * ** *
30610117 CCTTCTCCGCTGCTGCTT-AGGGAGACAAGGCTTG
386 CCTGCTCCACTGCAACTTCAGGGAGACAAGACTTG
30610151 GTGGCTTAAA
Statistics
Matches: 395, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
433 228 0.58
434 149 0.38
435 18 0.05
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (431 bp):
CTGCCCCACTCAACTTAGGAAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGA
GATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGC
TCCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACTGCAACTTCAGGGAGA
TAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTAGGAGGATAAGACTTGCTTACTTAGTCT
GCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAGAGAGATA
AGATCTGAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGAATTATCAGCTTCAACCTGC
TCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAAC
Found at i:30610230 original size:132 final size:132
Alignment explanation
Indices: 30610091--30610611 Score: 889
Period size: 132 Copynumber: 3.9 Consensus size: 132
30610081 CTGCAACTTC
* * * *
30610091 AGGGAGATAGGATTTACAATCTTCAACCTTCTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTGAGGGAGACAAGGCTTGGTGGC
*
30610156 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
30610221 TT
131 TT
* *
30610223 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTATTGCTGAGGGAGATAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTGAGGGAGACAAGGCTTGGTGGC
30610288 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
30610353 TT
131 TT
*
30610355 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTATTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTGAGGGAGACAAGGCTTGGTGGC
* * *
30610420 TTAAATCTGCTTCCCACTATCTTGGAAAAATAAGATTCGTCGTCTTCGATCTGCTCCACTATTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
30610485 TT
131 TT
* * * *
30610487 AGGGAGATAAGATTTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGTCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTGAGGGAGACAAGGCTTGGTGGC
* *
30610552 TTAAATCTGCTTCCCACTGTCTTGGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
30610612 GTCAATGCAG
Statistics
Matches: 369, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 369 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:30610231 original size:44 final size:44
Alignment explanation
Indices: 30610183--30610611 Score: 185
Period size: 44 Copynumber: 9.8 Consensus size: 44
30610173 TATCTTGGAA
* *
30610183 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
* * ** * * * *
30610227 AGATAAGATCTACAATCTTCAACCTTCTCCGCTATTGCTGAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
** ** * * *
30610271 AGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTATTGCTTAGG-G
* * *
30610315 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
* * ** * * * *
30610359 AGATAAGATCTACAATCTTCAACCTTCTCCGCTATTGCTGAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
* ** ** * * *
30610403 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTATTGCTTAGG-G
* * * *
30610447 AAATAAGATTCGTCGTCTTCGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
* ** * * * ** *
30610491 AGATAAGATTTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
* ** * * * *
30610535 AGACAAG-TCTTGGTGGCTTAAATCTGCTTCC-C-ACTGTCTT-GGAA
1 AGATAAGAT-TTGCCGTCTTCAATCTGC-TCCACTATTG-CTTAGG-G
*
30610579 AGATAAGATTCGCCGTCTTCAATCTGCTCCACT
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACT
30610612 GTCAATGCAG
Statistics
Matches: 265, Mismatches: 101, Indels: 37
0.66 0.25 0.09
Matches are distributed among these distances:
42 12 0.05
43 17 0.06
44 214 0.81
45 12 0.05
46 10 0.04
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTGCTCCACTATTGCTTAGGG
Found at i:30615791 original size:98 final size:98
Alignment explanation
Indices: 30615617--30615813 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
30615607 GTACAATAAA
* *
30615617 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACTCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
30615682 CCTCTAGAATCCCAAACTTGAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
*
30615715 ACTTTAAAAGAACATCCACTTATCCAATATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
30615780 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
30615813 A
1 A
30615814 TTATTTTTTA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
Found at i:30616508 original size:23 final size:24
Alignment explanation
Indices: 30616480--30616533 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 24
30616470 ATATACATAT
*
30616480 AAATAT-GAAAATATTCTTTAAAA
1 AAATATAGAAAATATTCGTTAAAA
30616503 AAATATAGGAAAATATTCGTT-AAA
1 AAATATA-GAAAATATTCGTTAAAA
30616527 AAATATA
1 AAATATA
30616534 CATGTACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 6 0.21
24 10 0.36
25 12 0.43
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (24 bp):
AAATATAGAAAATATTCGTTAAAA
Found at i:30616532 original size:24 final size:25
Alignment explanation
Indices: 30616486--30616533 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
30616476 ATATAAATAT
*
30616486 GAAAATATTCTTTAAAAAAATATAG
1 GAAAATATTCGTTAAAAAAATATAG
30616511 GAAAATATTCGTT-AAAAAATATA
1 GAAAATATTCGTTAAAAAAATATA
30616534 CATGTACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.31
Consensus pattern (25 bp):
GAAAATATTCGTTAAAAAAATATAG
Found at i:30617318 original size:19 final size:19
Alignment explanation
Indices: 30617294--30617406 Score: 172
Period size: 19 Copynumber: 5.8 Consensus size: 19
30617284 AATCATATAT
30617294 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
30617313 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
30617332 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
30617351 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
30617372 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
30617391 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
30617407 CTCAAAAATT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
19 67 0.80
21 17 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30617381 original size:40 final size:40
Alignment explanation
Indices: 30617294--30617405 Score: 192
Period size: 40 Copynumber: 2.9 Consensus size: 40
30617284 AATCATATAT
30617294 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
30617332 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
30617372 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
30617406 CCTCAAAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
38 28 0.40
40 42 0.60
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:30617387 original size:59 final size:56
Alignment explanation
Indices: 30617287--30617406 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 56
30617277 ATTACAAAAT
*
30617287 CATAT-ATTCTAAGATTGCATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
** *
30617342 CATATCATATCTAAGATTGCATATATCATATCTTGGATTGCATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTGC--ATATCATATCTAAGATTACATATCATATCTAAGATTG
30617401 CATATC
1 CATATC
30617407 CTCAAAAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 11 0.19
59 39 0.68
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (56 bp):
CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:30624152 original size:27 final size:28
Alignment explanation
Indices: 30624093--30624146 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
30624083 AAAATAATTA
*
30624093 AAATTAAATATGTTAATAATTTAAGTGC
1 AAATTAAATATGTTAATAATTAAAGTGC
* *
30624121 AAATTAATTAT-TTTATAATTAAAGTG
1 AAATTAAATATGTTAATAATTAAAGTG
30624147 TGAATTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (28 bp):
AAATTAAATATGTTAATAATTAAAGTGC
Found at i:30629313 original size:45 final size:44
Alignment explanation
Indices: 30629222--30629314 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
30629212 ATTACAACAT
*
30629222 CATTCCATTCAACCAAACACAAGAATACCATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACCATTACAGCTCTATTC
* * *
30629266 CATTCCATTCAACCAAATA-ATTGAATTACTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACCATTACAGCTCTATTC
30629311 CATT
1 CATT
30629315 ACACCTCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.49
45 21 0.49
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACCATTACAGCTCTATTC
Found at i:30629317 original size:16 final size:16
Alignment explanation
Indices: 30629296--30629336 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
30629286 TTGAATTACT
30629296 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
30629312 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
30629328 ATTACAGCT
1 ATTACAGCT
30629337 AGGGGTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:30630980 original size:103 final size:104
Alignment explanation
Indices: 30630801--30631065 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 104
30630791 AACCGTTATT
* * * * *
30630801 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCTCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
30630866 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
30630904 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
30630968 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
30631008 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
30631066 TTATGTACAA
Statistics
Matches: 148, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
102 1 0.01
103 81 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:30631427 original size:30 final size:29
Alignment explanation
Indices: 30631393--30631457 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
30631383 TAATCCACCA
30631393 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
30631423 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
30631453 CCCAA
1 CCCAA
30631458 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:30631431 original size:31 final size:30
Alignment explanation
Indices: 30631400--30631457 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
30631390 CCACCCAACT
30631400 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
30631430 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
30631458 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:30632573 original size:19 final size:19
Alignment explanation
Indices: 30632540--30632587 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
30632530 TAAACAATTC
30632540 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
30632557 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
30632576 AATAATATAAAT
1 AATAATATAAAT
30632588 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:30632719 original size:16 final size:17
Alignment explanation
Indices: 30632698--30632737 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
30632688 GGGGAAAATA
30632698 AAAAGTTTTG-GAGAAT
1 AAAAGTTTTGAGAGAAT
*
30632714 AAAAG-TTTGAGGGAAT
1 AAAAGTTTTGAGAGAAT
30632730 AAAAGTTT
1 AAAAGTTT
30632738 GAGGGAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (17 bp):
AAAAGTTTTGAGAGAAT
Found at i:30632738 original size:16 final size:16
Alignment explanation
Indices: 30632710--30632744 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
30632700 AAGTTTTGGA
30632710 GAATAAAAGTTTGAGG
1 GAATAAAAGTTTGAGG
30632726 GAATAAAAGTTTGAGG
1 GAATAAAAGTTTGAGG
30632742 GAA
1 GAA
30632745 AGTAAATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (16 bp):
GAATAAAAGTTTGAGG
Found at i:30633117 original size:9 final size:9
Alignment explanation
Indices: 30633103--30633138 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
30633093 TATAGTTTGA
30633103 TATTCGAAT
1 TATTCGAAT
30633112 TATTCGAAT
1 TATTCGAAT
*
30633121 TATTCGAGT
1 TATTCGAAT
30633130 TA-TCGAAT
1 TATTCGAAT
30633138 T
1 T
30633139 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 6 0.24
9 19 0.76
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (9 bp):
TATTCGAAT
Found at i:30641238 original size:30 final size:28
Alignment explanation
Indices: 30641194--30641258 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 28
30641184 TAAATATATT
30641194 TATTTTTTTAATTTTTTTAATTTTAAAA
1 TATTTTTTTAATTTTTTTAATTTTAAAA
*
30641222 TACTTTTTTATTATTTTTTTAATTTTAAAA
1 TA-TTTTTT-TAATTTTTTTAATTTTAAAA
30641252 TATTTTT
1 TATTTTT
30641259 AAAATACTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 2 0.06
29 11 0.32
30 21 0.62
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (28 bp):
TATTTTTTTAATTTTTTTAATTTTAAAA
Found at i:30641243 original size:39 final size:40
Alignment explanation
Indices: 30641193--30641317 Score: 152
Period size: 38 Copynumber: 3.2 Consensus size: 40
30641183 ATAAATATAT
** *
30641193 TTATTTTTTTAATTTT-TTTAATTTTAAAATACTTTTTTA
1 TTATTTTTTTAATTTTAAATATTTTTAAAATACTTTTTTA
30641232 TTATTTTTTTAATTTTAAAATATTTTTAAAATAC-TTTTTA
1 TTATTTTTTTAATTTT-AAATATTTTTAAAATACTTTTTTA
*
30641272 --AATTTTTTAATTTTAAAATATTTTTAAAATACTTTTTT-
1 TTATTTTTTTAATTTT-AAATATTTTTAAAATACTTTTTTA
*
30641310 TAATTTTT
1 TTATTTTT
30641318 AAAATAAATT
Statistics
Matches: 76, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
38 31 0.41
39 21 0.28
40 11 0.14
41 13 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (40 bp):
TTATTTTTTTAATTTTAAATATTTTTAAAATACTTTTTTA
Found at i:30641258 original size:11 final size:11
Alignment explanation
Indices: 30641244--30641308 Score: 63
Period size: 11 Copynumber: 6.4 Consensus size: 11
30641234 ATTTTTTTAA
30641244 TTTTAAAATAT
1 TTTTAAAATAT
30641255 TTTTAAAATACT
1 TTTTAAAATA-T
30641267 TTTT-AAAT-T
1 TTTTAAAATAT
30641276 TTTT---A-A-
1 TTTTAAAATAT
30641282 TTTTAAAATAT
1 TTTTAAAATAT
30641293 TTTTAAAATACT
1 TTTTAAAATA-T
30641305 TTTT
1 TTTT
30641309 TTAATTTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
6 4 0.09
7 1 0.02
9 6 0.13
10 1 0.02
11 24 0.52
12 10 0.22
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:30641270 original size:30 final size:30
Alignment explanation
Indices: 30641206--30641277 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
30641196 TTTTTTTAAT
* * *
30641206 TTTTTTAATTTTAAAATACTTTTTTATTAT
1 TTTTTTAATTTTAAAATACTTTTTAAATAC
30641236 TTTTTTAATTTTAAAATA-TTTTTAAAATAC
1 TTTTTTAATTTTAAAATACTTTTT-AAATAC
*
30641266 TTTTTAAATTTT
1 TTTTTTAATTTT
30641278 TTAATTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 5 0.14
30 32 0.86
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (30 bp):
TTTTTTAATTTTAAAATACTTTTTAAATAC
Found at i:30641287 original size:38 final size:39
Alignment explanation
Indices: 30641214--30641317 Score: 165
Period size: 38 Copynumber: 2.6 Consensus size: 39
30641204 ATTTTTTTAA
*
30641214 TTTTAAAATACTTTTTTATTATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTTA--AATTTTTTAATTTTAAAATAT
30641255 TTTTAAAATAC-TTTTTAAATTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTTAAATTTTTTAATTTTAAAATAT
*
30641293 TTTTAAAATACTTTTTTTAATTTTT
1 TTTTAAAATACTTTTTTAAATTTTT
30641318 AAAATAAATT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
38 31 0.52
39 12 0.20
40 6 0.10
41 11 0.18
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (39 bp):
TTTTAAAATACTTTTTTAAATTTTTTAATTTTAAAATAT
Found at i:30641329 original size:21 final size:21
Alignment explanation
Indices: 30641291--30641330 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30641281 ATTTTAAAAT
**
30641291 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
30641312 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
30641331 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:30641337 original size:22 final size:21
Alignment explanation
Indices: 30641290--30641348 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
30641280 AATTTTAAAA
* *
30641290 TATTTTTAAAAT-ACTTTTTT
1 TATTTTTAAAATAAATTTTTG
30641310 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAATAAATTTTT-G
30641333 TATTTATTAAAA-AAAT
1 TATTT-TTAAAATAAAT
30641349 GGGCCGGACT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 1 0.03
21 11 0.33
22 14 0.42
23 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:30641980 original size:65 final size:64
Alignment explanation
Indices: 30641901--30642146 Score: 350
Period size: 65 Copynumber: 3.8 Consensus size: 64
30641891 AGGGTTTTAA
* *
30641901 GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTG-TTAAGGATTTCTGGGCTTAATTA
1 GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGG-TTT-TGGGTTTGATTA
30641965 G
64 G
*
30641966 GGTTTAGGAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTGGGGTTTGATTAG
1 GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTT-GGGTTTGATTAG
** * * * *
30642031 GGTTTAGGAAATTTTAAATTACGGTATTAAGTGTTTAATTGTTTAAGGTTTTTGGGTTTGATTAA
1 GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGG-TTTTGGGTTTGATTAG
* *
30642096 GGATTAGAAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
1 GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
30642147 AATTACTTTT
Statistics
Matches: 161, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
64 4 0.02
65 147 0.91
66 10 0.06
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (64 bp):
GGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTGGGTTTGATTAG
Found at i:30646948 original size:365 final size:366
Alignment explanation
Indices: 30646277--30647012 Score: 1393
Period size: 365 Copynumber: 2.0 Consensus size: 366
30646267 TCCTAAAAGT
30646277 TAATTCTATAAATAAGAAGCTTTTGTTTTGACTCAAACTCACCAAAGCATCAAAGAGAAGAAAAA
1 TAATTCTATAAATAAGAAGCTTTTGTTTTGACTCAAACTCACCAAAGCATCAAAGAGAAGAAAAA
*
30646342 AAGAAAGAGCATATCAGCTGAAGAAGAGCACCCAAAGAAAGCTTTGGGTTGGGCAGCCCTGGGAC
66 AAGAAAGAGCATATCAGCTGAAGAAGAGCACCCAAAGAAAGCTTTGGGTTGGGCAGCCCAGGGAC
30646407 TCATCTGCTCACCTCGCTCCTTTTACATTCTCCAGAAGGTTTAAATTATTTACGGTGTTTTGTTT
131 TCATCTGCTCACCTCGCTCCTTTTACATTCTCCAGAAGGTTTAAATTATTTACGGTGTTTTGTTT
30646472 TCATAAGTAGTTCTTTTTTACTGCATTTGAACAAGATGATTATGATGAGAAATTGCAGGAAAACA
196 TCATAAGTAGTTCTTTTTTACTGCATTTGAACAAGATGATTATGATGAGAAATTGCAGGAAAACA
* *
30646537 GGAGAGAGATGAGGCCTTCAGGGTGCTCTATTGTGGGATATGCCACTCTGATTTTCATATGATCA
261 GGAGAGAGATGAGGCCTTCAAGATGCTCTATTGTGGGATATGCCACTCTGATTTTCATATGATCA
30646602 AGAATGAATGGGGTAACACTGTTCATCATTTTCTTCCTGGG
326 AGAATGAATGGGGTAACACTGTTCATCATTTTCTTCCTGGG
*
30646643 TAATTCTATAAATAAGAAGCTTTTGTTTTGACTCAAACTCACCAAAGCATCAACGAGAAGAAAAA
1 TAATTCTATAAATAAGAAGCTTTTGTTTTGACTCAAACTCACCAAAGCATCAAAGAGAAGAAAAA
*
30646708 AAGAATGAGCATATCAGCTGAAGAAGAGCACCCAAAGAAAGCTTTGGGTTGGGCAG-CCAGGGAC
66 AAGAAAGAGCATATCAGCTGAAGAAGAGCACCCAAAGAAAGCTTTGGGTTGGGCAGCCCAGGGAC
*
30646772 TCATCTGCTCACCTCTCTCCTTTTACATTCTCCAGAAGGTTTAAATTATTTACGGTGTTTTGTTT
131 TCATCTGCTCACCTCGCTCCTTTTACATTCTCCAGAAGGTTTAAATTATTTACGGTGTTTTGTTT
*
30646837 TCATAAGTAGTTCTTTTTTACTGCATTTGAACAAGATGATTATGATGAGAAATTGCAGGGAAACA
196 TCATAAGTAGTTCTTTTTTACTGCATTTGAACAAGATGATTATGATGAGAAATTGCAGGAAAACA
30646902 GGAGAGAGATGAGGCCTTCAAGATGCTCTATTGTGGGATATGCCACTCTGATTTTCATATGATCA
261 GGAGAGAGATGAGGCCTTCAAGATGCTCTATTGTGGGATATGCCACTCTGATTTTCATATGATCA
*
30646967 AGAATGAATGGGGTAACACTGTTCATCCTTTTCTTCCTGGG
326 AGAATGAATGGGGTAACACTGTTCATCATTTTCTTCCTGGG
30647008 TAATT
1 TAATT
30647013 AATTTCTCTT
Statistics
Matches: 362, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
365 243 0.67
366 119 0.33
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (366 bp):
TAATTCTATAAATAAGAAGCTTTTGTTTTGACTCAAACTCACCAAAGCATCAAAGAGAAGAAAAA
AAGAAAGAGCATATCAGCTGAAGAAGAGCACCCAAAGAAAGCTTTGGGTTGGGCAGCCCAGGGAC
TCATCTGCTCACCTCGCTCCTTTTACATTCTCCAGAAGGTTTAAATTATTTACGGTGTTTTGTTT
TCATAAGTAGTTCTTTTTTACTGCATTTGAACAAGATGATTATGATGAGAAATTGCAGGAAAACA
GGAGAGAGATGAGGCCTTCAAGATGCTCTATTGTGGGATATGCCACTCTGATTTTCATATGATCA
AGAATGAATGGGGTAACACTGTTCATCATTTTCTTCCTGGG
Found at i:30647794 original size:16 final size:16
Alignment explanation
Indices: 30647773--30647825 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
30647763 GTTTGGTTCA
30647773 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
30647789 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
30647805 CTGTAATGGGATAAAG
1 CTGTAATGGAATAGAG
30647821 CTGTA
1 CTGTA
30647826 GACAGTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:30649857 original size:26 final size:26
Alignment explanation
Indices: 30649825--30650193 Score: 479
Period size: 26 Copynumber: 14.2 Consensus size: 26
30649815 GTGTTGACCA
*
30649825 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
*
30649851 AAATACCCTTGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
*
30649877 AAATACCCTCAATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* * *
30649903 AAATATCCTCAATGGGTATATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
30649929 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTACCG
**
30649955 AAATACCCTCGATGGGTAAATTACTA
1 AAATACCCTCGATGGGTAAATTACCG
* *
30649981 AAATACCCTCAATCGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* * * *
30650007 AAATACCTTCAATCGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCG
**
30650033 AAATACCCTCGAT-GGTAAATTGTCG
1 AAATACCCTCGATGGGTAAATTACCG
*
30650058 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
* *
30650084 AAATACCCTCGATGGGTAAAGTATCG
1 AAATACCCTCGATGGGTAAATTACCG
** *
30650110 AAATACCCTTAATGGGTAAAGTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* **
30650136 AAATATCCTTAATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
*
30650162 AAATACCCTCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
30650188 AAATAC
1 AAATAC
30650194 GCCCAAAAGG
Statistics
Matches: 305, Mismatches: 37, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
25 24 0.08
26 281 0.92
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCG
Found at i:30650983 original size:20 final size:19
Alignment explanation
Indices: 30650942--30650986 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
30650932 GGTACAAATA
*
30650942 ATTTTTCACAACAAACATT
1 ATTTTTCACAACAAACAAT
30650961 ATTTTTCA-AGACAAACACAT
1 ATTTTTCACA-ACAAACA-AT
30650981 ATTTTT
1 ATTTTT
30650987 AACTACAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 7 0.30
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTTTTCACAACAAACAAT
Found at i:30657618 original size:26 final size:26
Alignment explanation
Indices: 30657590--30657813 Score: 297
Period size: 26 Copynumber: 8.6 Consensus size: 26
30657580 GTGTTGATTA
*
30657590 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTATCG
**
30657616 AAATACATTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* *
30657642 AAATACCTTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTATCG
*
30657668 CAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* * *
30657694 AAATACTCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTATCG
*
30657720 AAATACCCTCGATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTATCG
* *
30657746 AAATACCAC-CGATTGGTAAATTACCG
1 AAATACC-CTCGATGGGTAAATTATCG
* *
30657772 AAATACCCTCGATGGATAAAGTATCG
1 AAATACCCTCGATGGGTAAATTATCG
*
30657798 AAATACCTTCGATGGG
1 AAATACCCTCGATGGG
30657814 ACCCTCGATG
Statistics
Matches: 171, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
25 1 0.01
26 169 0.99
27 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTATCG
Found at i:30657840 original size:38 final size:38
Alignment explanation
Indices: 30657776--30657851 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
30657766 TTACCGAAAT
*
30657776 ACCCTCGATGGATAAAGTATCGAAATACCTTCGATGGG
1 ACCCTCGATGGATAAAGTATCGAAATACCCTCGATGGG
* *
30657814 ACCCTCGATGGGTAAATTACTC-AAATACCCTCGATGGG
1 ACCCTCGATGGATAAAGTA-TCGAAATACCCTCGATGGG
30657852 TAAATTACTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 32 0.94
39 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (38 bp):
ACCCTCGATGGATAAAGTATCGAAATACCCTCGATGGG
Found at i:30657876 original size:64 final size:64
Alignment explanation
Indices: 30657755--30657877 Score: 162
Period size: 64 Copynumber: 1.9 Consensus size: 64
30657745 GAAATACCAC
* *
30657755 CGATTGGTAAATTACCGAAATACCCTCGATGGATAAAGTATCGAAATACCTTCGATGGGACCCT
1 CGATGGGTAAATTACCGAAATACCCTCGATGGATAAAGTATCGAAATACCCTCGATGGGACCCT
* *
30657819 CGATGGGTAAATTACTC-AAATACCCTCGATGGGTAAATTA-CTGAAATACCC-CTGATGGG
1 CGATGGGTAAATTAC-CGAAATACCCTCGATGGATAAAGTATC-GAAATACCCTC-GATGGG
30657878 TAAATTACTA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
63 2 0.04
64 49 0.94
65 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (64 bp):
CGATGGGTAAATTACCGAAATACCCTCGATGGATAAAGTATCGAAATACCCTCGATGGGACCCT
Found at i:30657892 original size:90 final size:90
Alignment explanation
Indices: 30657724--30657894 Score: 231
Period size: 90 Copynumber: 1.9 Consensus size: 90
30657714 TTACCAAAAT
* * *
30657724 ACCCTCGATGGGTAAATTATTGAAATACCACCGATTGGTAAATTACCGAAATACCCTCGATGGAT
1 ACCCTCGATGGGTAAATTACTCAAATACCACCGATGGGTAAATTACCGAAATACCCTCGATGGAT
*
30657789 AAAGTATCGAAATACCTTCGATGGG
66 AAAGTATCAAAATACCTTCGATGGG
*
30657814 ACCCTCGATGGGTAAATTACTCAAATACC-CTCGATGGGTAAATTACTGAAATACCC-CTGATGG
1 ACCCTCGATGGGTAAATTACTCAAATACCAC-CGATGGGTAAATTACCGAAATACCCTC-GATGG
* *
30657877 GTAAATTA-CTAAAATACC
64 ATAAAGTATC-AAAATACC
30657895 CCGAAAGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
89 3 0.04
90 68 0.96
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (90 bp):
ACCCTCGATGGGTAAATTACTCAAATACCACCGATGGGTAAATTACCGAAATACCCTCGATGGAT
AAAGTATCAAAATACCTTCGATGGG
Found at i:30657896 original size:26 final size:27
Alignment explanation
Indices: 30657815--30657896 Score: 132
Period size: 26 Copynumber: 3.1 Consensus size: 27
30657805 TTCGATGGGA
*
30657815 CCCTCGATGGGTAAATTACTCAAATA-
1 CCCTCGATGGGTAAATTACTAAAATAC
*
30657841 CCCTCGATGGGTAAATTACTGAAATAC
1 CCCTCGATGGGTAAATTACTAAAATAC
30657868 CCCT-GATGGGTAAATTACTAAAATAC
1 CCCTCGATGGGTAAATTACTAAAATAC
30657894 CCC
1 CCC
30657897 GAAAGGGTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.92
27 4 0.08
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (27 bp):
CCCTCGATGGGTAAATTACTAAAATAC
Found at i:30657905 original size:52 final size:54
Alignment explanation
Indices: 30657815--30657924 Score: 145
Period size: 52 Copynumber: 2.1 Consensus size: 54
30657805 TTCGATGGGA
* * *
30657815 CCCTCGATGGGTAAATTACTCAAATACCCTCGATGGGTAAATT-ACTGAAATAC
1 CCCTCGATGGGTAAATTACTAAAATACCCTCGAAGGGTAAATTGACCGAAATAC
* *
30657868 CCCT-GATGGGTAAATTACTAAAATACCC-CGAAAGGGTAGATTGACCGATATAC
1 CCCTCGATGGGTAAATTACTAAAATACCCTCG-AAGGGTAAATTGACCGAAATAC
30657921 CCCT
1 CCCT
30657925 AATAGATGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
51 2 0.04
52 32 0.64
53 16 0.32
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (54 bp):
CCCTCGATGGGTAAATTACTAAAATACCCTCGAAGGGTAAATTGACCGAAATAC
Found at i:30658673 original size:21 final size:22
Alignment explanation
Indices: 30658649--30658692 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
30658639 TACAAATAAG
30658649 TTTTCACA-ACAAACAC-TATTT
1 TTTTCA-AGACAAACACGTATTT
30658670 TTTTCAAGACAAACACGTATTT
1 TTTTCAAGACAAACACGTATTT
30658692 T
1 T
30658693 CAATTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 14 0.67
22 6 0.29
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTTCAAGACAAACACGTATTT
Found at i:30659306 original size:142 final size:143
Alignment explanation
Indices: 30659132--30659410 Score: 427
Period size: 143 Copynumber: 2.0 Consensus size: 143
30659122 TCCAAATCAC
* * * *
30659132 ATTTTATAGATCTATTATTAAGAAATGGGTTTTAGTTTTAGTTTTTTTGTTT-TCTTC-TGTAAA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAATTTTTTT-TTTATCTTCTTGGAAA
*
30659195 TTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTGTGTTCTACAAATTC
65 TTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAATTC
30659260 ATGGAGAGAAGAGA
130 ATGGAGAGAAGAGA
30659274 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAATTTTTTTTTTATCTTCTTGGAAAT
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAATTTTTTTTTTATCTTCTTGGAAAT
* ** * * * *
30659339 TGATTGAGAGTTGAAAGTGTTGAGAAATGTTTTTTTTTTCTTTCTTGTTATGTTGTAGAAATTGA
66 TGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAATTCA
30659404 TGGAGAG
131 TGGAGAG
30659411 TAGAAGAGAA
Statistics
Matches: 123, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
141 3 0.02
142 50 0.41
143 70 0.57
ACGTcount: A:0.28, C:0.05, G:0.19, T:0.48
Consensus pattern (143 bp):
ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAATTTTTTTTTTATCTTCTTGGAAAT
TGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAATTCA
TGGAGAGAAGAGA
Found at i:30676714 original size:6 final size:7
Alignment explanation
Indices: 30676688--30676713 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
30676678 TATTTTCCTT
30676688 GTTTTTA
1 GTTTTTA
30676695 GTTTTTA
1 GTTTTTA
30676702 GTTTTTA
1 GTTTTTA
30676709 GTTTT
1 GTTTT
30676714 AAATTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (7 bp):
GTTTTTA
Found at i:30681067 original size:4 final size:4
Alignment explanation
Indices: 30681058--30681083 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
30681048 GTTTATCAGT
30681058 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
30681084 TCTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:30690961 original size:182 final size:181
Alignment explanation
Indices: 30690621--30690983 Score: 654
Period size: 182 Copynumber: 2.0 Consensus size: 181
30690611 ATAAAGTGTA
*
30690621 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAATTTATATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
*
30690686 TAGCGATGTCACACTAGTTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
66 TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
30690751 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
131 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
* *
30690802 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTGAGAATAAGTTGTATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
**
30690867 TAGCGATGTCACACCTAATTATCCTTTATGTCCTTAAATTTAAGAAAGTTAGGATTAAATTGAAT
66 TAGCGATGTCACA-CTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAAT
*
30690932 GGATTGGTGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
130 GGATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
30690984 GTTTGTGATT
Statistics
Matches: 174, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
181 75 0.43
182 99 0.57
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (181 bp):
AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
Found at i:30692073 original size:68 final size:70
Alignment explanation
Indices: 30691962--30692148 Score: 234
Period size: 70 Copynumber: 2.7 Consensus size: 70
30691952 AGGTTTATGG
* * * * *
30691962 TGTAAGACCATAGCTCGACTATGATAACCAATAGAGTCCGCTAGGA-AA-ATAAACATGAGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGAGGTTA
30692025 CATTA
66 CATTA
* * * *
30692030 TGTAAGACCATGGCTCGGCCATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGGGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGAGGTTA
*
30692095 CATTG
66 CATTA
* * *
30692100 TGTAAAACCATAGCTCGACTATGGCAACAAATAAAAGTCTGCTAGGACA
1 TGTAAGACCATAGCTCGACTATGACAACAAAT-AGAGTCTGCTAGGACA
30692149 GTGAACCAGG
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
68 40 0.40
69 2 0.02
70 43 0.43
71 15 0.15
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (70 bp):
TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGAGGTTA
CATTA
Found at i:30694355 original size:13 final size:13
Alignment explanation
Indices: 30694337--30694400 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
30694327 AGTTCTTCAT
30694337 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
30694350 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
30694363 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
30694376 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
30694389 TGCTTTTGAAAA
1 TGCTTTTGAAAA
30694401 TTTTGAGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:30696529 original size:72 final size:72
Alignment explanation
Indices: 30696439--30696606 Score: 205
Period size: 72 Copynumber: 2.3 Consensus size: 72
30696429 AAAATCACAT
* * * *
30696439 ATAAACAACTATTGATAAAACTA-ATTTAGTA-AAAAATAAGTAGAATATAAATTCAATATCTAA
1 ATAAACAACTATTAATAAAACTAGA-TTA-CACAAAAATAAGTAGAACATAAATTCAATATCCAA
*
30696502 AGACCAAAC
64 AAACCAAAC
* *
30696511 ATAAACAACTTTTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
30696576 ACCAAAC
66 ACCAAAC
* * * *
30696583 ATAAATAATTATTGATAAACCTAG
1 ATAAACAACTATTAATAAAACTAG
30696607 TTTAGCATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
71 1 0.01
72 80 0.98
73 1 0.01
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:30697052 original size:18 final size:18
Alignment explanation
Indices: 30697035--30697099 Score: 87
Period size: 18 Copynumber: 3.7 Consensus size: 18
30697025 TCCATCAATT
*
30697035 TGAACATCATTTGAAATT
1 TGAACATCATTTGAAATG
* *
30697053 TGAACACCATTAGAAATG
1 TGAACATCATTTGAAATG
*
30697071 TGAACATCATAT-AAATG
1 TGAACATCATTTGAAATG
30697088 TGAACATCATTT
1 TGAACATCATTT
30697100 CTCATATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 16 0.40
18 24 0.60
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:30699597 original size:25 final size:25
Alignment explanation
Indices: 30699591--30699691 Score: 157
Period size: 25 Copynumber: 4.0 Consensus size: 25
30699581 GGAACAAATA
*
30699591 ACCAGCAGAGGAAAAAAGAACCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
*
30699616 ACCAGCAGAGGAAAAAAGAACCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
*
30699641 ACCAGCAGAAGAACAAAGAACCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
* *
30699666 ACCAGCAGAGGATCAAAGAATCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
30699691 A
1 A
30699692 GAGGAACAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 71 1.00
ACGTcount: A:0.50, C:0.25, G:0.23, T:0.02
Consensus pattern (25 bp):
ACCAGCAGAGGAACAAAGAACCAGC
Found at i:30699620 original size:44 final size:44
Alignment explanation
Indices: 30699569--30699709 Score: 183
Period size: 44 Copynumber: 3.1 Consensus size: 44
30699559 AAAGGAACAA
* *
30699569 AGCACCAGCAGAGGAACAAATAACCAGCAGAGGAAAAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACCAGCAGAGGAACAAAGAACC
*
30699613 AGCACCAGCAGAGGAAAAAAGAACCAGCACCAGCAGAAGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACCAG---CAG-AG--GAACAAAGAACC
* *
30699663 AGCACCAGCAGAGGATCAAAGAATCAGCAGAGGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACCAGCAGAGGAACAAAGAACC
30699707 AGC
1 AGC
30699710 GATTAGAAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
44 40 0.47
46 2 0.02
47 6 0.07
48 2 0.02
50 35 0.41
ACGTcount: A:0.50, C:0.24, G:0.23, T:0.02
Consensus pattern (44 bp):
AGCACCAGCAGAGGAACAAAGAACCAGCAGAGGAACAAAGAACC
Found at i:30699641 original size:19 final size:19
Alignment explanation
Indices: 30699561--30699616 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
30699551 GGTGGAGAAA
*
30699561 AGGAACAAAGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
*
30699580 AGGAACAAATAACCAGCAG
1 AGGAACAAAGAACCAGCAG
*
30699599 AGGAAAAAAGAACCAGCA
1 AGGAACAAAGAACCAGCA
30699617 CCAGCAGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.54, C:0.21, G:0.23, T:0.02
Consensus pattern (19 bp):
AGGAACAAAGAACCAGCAG
Found at i:30699665 original size:19 final size:19
Alignment explanation
Indices: 30699641--30699709 Score: 57
Period size: 19 Copynumber: 3.3 Consensus size: 19
30699631 AAGAACCAGC
30699641 ACCAGCAGAAGAACAAAGA
1 ACCAGCAGAAGAACAAAGA
*
30699660 ACCAGCACCAGCAGAGGATCAAAGA
1 ACCAG---CAG-A-A-GAACAAAGA
* *
30699685 ATCAGCAGAGGAACAAAGA
1 ACCAGCAGAAGAACAAAGA
30699704 ACCAGC
1 ACCAGC
30699710 GATTAGAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
19 18 0.46
21 1 0.03
22 6 0.15
23 1 0.03
24 1 0.03
25 12 0.31
ACGTcount: A:0.49, C:0.25, G:0.23, T:0.03
Consensus pattern (19 bp):
ACCAGCAGAAGAACAAAGA
Found at i:30703685 original size:29 final size:29
Alignment explanation
Indices: 30703644--30703734 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
30703634 GTCCATAGAG
30703644 ATAAATAGCCACAAAGGCATCCACATAACA
1 ATAAATAGCCACAAAGGCATCCACATAA-A
* * *
30703674 A-ATATATCCACAAAGGC-TCTCATATAAA
1 ATAAATAGCCACAAAGGCATC-CACATAAA
* *
30703702 ATTAAATAGCTACAAAGGCATCCACATATA
1 A-TAAATAGCCACAAAGGCATCCACATAAA
30703732 ATA
1 ATA
30703735 GACTTCTCCA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
28 4 0.08
29 22 0.45
30 21 0.43
31 2 0.04
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.21
Consensus pattern (29 bp):
ATAAATAGCCACAAAGGCATCCACATAAA
Found at i:30703829 original size:29 final size:30
Alignment explanation
Indices: 30703769--30703838 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
30703759 ACAGATACAA
* *
30703769 CCACAAAGACTCTTCATATAACAGAATCAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
* *
30703799 CCTCAAAGGCTCTT-ATACAACAGAATTAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
*
30703828 CCACGAAGGCT
1 CCACAAAGGCT
30703839 TTACTTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (30 bp):
CCACAAAGGCTCTTCATACAACAGAATCAG
Found at i:30711576 original size:23 final size:23
Alignment explanation
Indices: 30711545--30711589 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
30711535 TACAATCAAC
30711545 ATTACACATATC-AACAAGTCATA
1 ATTACACAT-TCAAACAAGTCATA
*
30711568 ATTAGACATTCAAAACAAGTCA
1 ATTACACATTC-AAACAAGTCA
30711590 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (23 bp):
ATTACACATTCAAACAAGTCATA
Found at i:30714734 original size:11 final size:11
Alignment explanation
Indices: 30714718--30714764 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
30714708 TTTTATACTA
30714718 AATAAAATAAT
1 AATAAAATAAT
30714729 AATAAAATATAT
1 AATAAAATA-AT
* *
30714741 CATTAAAATATT
1 -AATAAAATAAT
30714753 AATAAAATAAT
1 AATAAAATAAT
30714764 A
1 A
30714765 TTTATCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 19 0.63
12 3 0.10
13 8 0.27
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:30715623 original size:27 final size:27
Alignment explanation
Indices: 30715575--30715631 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
30715565 CATCCTGACT
* *
30715575 ATTTGGATTATTATTGCAACCAAGACC
1 ATTTGGATTATCATTGAAACCAAGACC
*
30715602 ATTTGGATTATCATT-AAGACCAAGATC
1 ATTTGGATTATCATTGAA-ACCAAGACC
30715629 ATT
1 ATT
30715632 CCCATTTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (27 bp):
ATTTGGATTATCATTGAAACCAAGACC
Found at i:30717752 original size:13 final size:13
Alignment explanation
Indices: 30717734--30717763 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
30717724 TTTCAATGAC
30717734 TTAATTAATGGAA
1 TTAATTAATGGAA
*
30717747 TTAATTAATGTAA
1 TTAATTAATGGAA
30717760 TTAA
1 TTAA
30717764 AAGATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (13 bp):
TTAATTAATGGAA
Found at i:30719360 original size:19 final size:19
Alignment explanation
Indices: 30719326--30719374 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
30719316 CTAAACAATT
30719326 TAATAATATAAA--TAATA
1 TAATAATATAAATTTAATA
*
30719343 TAA-AATATGAAATTTAATT
1 TAATAATAT-AAATTTAATA
30719362 TAATAATATAAAT
1 TAATAATATAAAT
30719375 AGTAGATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 6 0.22
19 11 0.41
20 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TAATAATATAAATTTAATA
Found at i:30719519 original size:17 final size:17
Alignment explanation
Indices: 30719461--30719519 Score: 68
Period size: 19 Copynumber: 3.4 Consensus size: 17
30719451 AAAGAGTGAG
30719461 AAGTAAAAGTTTAGGGGA
1 AAGTAAAAGTTT-GGGGA
*
30719479 AAATAAAAAGTTTTGGGG-
1 AAGT-AAAAG-TTTGGGGA
30719497 AA-TAAAAGTTTGGGGA
1 AAGTAAAAGTTTGGGGA
30719513 AAGTAAA
1 AAGTAAA
30719520 TAGGGGAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
17 5 0.14
18 5 0.14
19 9 0.25
20 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (17 bp):
AAGTAAAAGTTTGGGGA
Found at i:30719889 original size:9 final size:9
Alignment explanation
Indices: 30719871--30719907 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
30719861 TATAGTTTGA
*
30719871 TATTCAAAT
1 TATTCGAAT
30719880 TATTCGAAT
1 TATTCGAAT
*
30719889 TATTCGAGT
1 TATTCGAAT
30719898 TATTCGAAT
1 TATTCGAAT
30719907 T
1 T
30719908 CGAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:30723383 original size:64 final size:65
Alignment explanation
Indices: 30723303--30723431 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
30723293 ATAAACATTC
* *
30723303 AAATTGGGACGAAATGGA-TGTCATACAAAACTACCCAGCCAAATTGCCTTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
* * *
30723367 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
30723432 GAATGCACTT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 17 0.29
65 42 0.71
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (65 bp):
AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
Found at i:30723745 original size:101 final size:101
Alignment explanation
Indices: 30723367--30724658 Score: 912
Period size: 101 Copynumber: 13.3 Consensus size: 101
30723357 AAATTTGATT
* * * * * * *
30723367 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
** * *
30723432 GAATGC-ACTTTAAGAGGACATTTTTATAAGTATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
30723467 AAATAGGGGCGAAATGGACTGTCATG-CAAAATTACCTAGCCAAACTGCCCTACCAAAA-TTGAT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCT-GCCAAACTGCCCTGCCAAAATTTGAT
* * * * *
30723530 TGAAAGAAAAAATAAGAGGATATTTCTATAAGCAATC
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
** * ** * * *
30723567 AAATTGAAACAAAATGGGTTGTCATG-CTAAACTACCCCTACCAAACTCCCCTGCCAAAATTTGA
1 AAATTGGGACGAAATGGACTGTCATGTC-AAACTA-ACCTGCCAAACTGCCCTGCCAAAATTTGA
* * *
30723631 TTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTC
64 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
30723669 AATTTGGGACGAAATGGACTGTCTTGTCAAACGAACCTGCTAAACTGCCCTGCCAATATTTGCTT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
* * *
30723734 GAATGCAAAATTAAGAGGACATTTCTGTTAGCATTT
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
30723770 AAATTGGAACAAAATAGACTATCATGCCAAACT-A--T-------T---CTGCCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
30723822 TAATGAAAAATTAAGAGGATATTTCTATAAGCACTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
30723858 AAATTGGGACGAAAT----TGAC-TGT-----TAA---GTCAAACTGTCTTGCTAAAATTT-ATT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
** * * *
30723909 GAATGATAAATTAAAAGGACAGTTCTATAACCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * * * * *
30723945 AAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
** * * * *
30724010 GAATATAAATTTAAAAGGACATTTTTATAAACATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
30724046 AAATTGGGACGAAATGGACTGTGATGCCAAACT-A-C--CC-AA--------CCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
30724098 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* ** * * *
30724134 AATTTGGGACGAAATGGGTTGTCATGTCAAACT-ACCTTGCCAAACTGCCCTGCTAATATTTGCT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACC-TGCCAAACTGCCCTGCCAAAATTTGAT
* *
30724198 TGAATGCAAAATTAAGAGAACATTTCTATTAGCATTC
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * ** *
30724235 ATATTAGGACGACATGAACTGTTATACCAAA-T----TGCTCAAA---------AAAAATTTGAT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGC-CAAACTGCCCTGCCAAAATTTGAT
* * * *
30724286 TGAATGAAAAATTAAGAGAACATTTCTGTAAGCATTA
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * ** * * * *
30724323 AAAATAGGATGAAATGAACTGT-ACTGCCAAATTTCCCAGCCAAACTACTCTGCCAAAATTAGAT
1 AAATTGGGACGAAATGGACTGTCA-TGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGAT
* *
30724387 TGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * *
30724424 AAATTCGGACGAAAAGGAATGTCATGCCAAACT-ACTCAGCCAAACTGCCCTACCAAAATTTGGT
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTAAC-CTGCCAAACTGCCCTGCCAAAATTTGAT
* *
30724488 TGAATGCAAATTTAAGAGGACATTTTTATAAGCATTC
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
30724525 AAATTGGGACGAAATGGACTGCCATG-CGAAACT-ACCTAGCCAAACTGCCCTACCAAAATTTGA
1 AAATTGGGACGAAATGGACTGTCATGTC-AAACTAACCT-GCCAAACTGCCCTGCCAAAATTTGA
*
30724588 TTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTC
64 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * *
30724626 AATTTCGGACGAAATGTAC-GTCATGTCAAACTA
1 AAATTGGGACGAAATGGACTGTCATGTCAAACTA
30724659 CCCTATTAAT
Statistics
Matches: 931, Mismatches: 195, Indels: 131
0.74 0.16 0.10
Matches are distributed among these distances:
78 1 0.00
79 1 0.00
83 2 0.00
84 2 0.00
85 1 0.00
87 46 0.05
88 201 0.22
89 2 0.00
91 3 0.00
92 8 0.01
93 4 0.00
96 5 0.01
97 8 0.01
98 1 0.00
99 18 0.02
100 113 0.12
101 451 0.48
102 63 0.07
103 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (101 bp):
AAATTGGGACGAAATGGACTGTCATGTCAAACTAACCTGCCAAACTGCCCTGCCAAAATTTGATT
GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
Found at i:30723862 original size:88 final size:87
Alignment explanation
Indices: 30723718--30723978 Score: 283
Period size: 88 Copynumber: 3.0 Consensus size: 87
30723708 CTAAACTGCC
* * * * * *
30723718 CTGCCAATATTTGCTTGAATGCAAAATTAAGAGGACATTTCTGTTAGCATTTAAATTGGAACAAA
1 CTGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG-ACAAA
*
30723783 ATAGACTATCATGCCAAACTATT
65 ATAGACTATCATGCCAAACTAGT
* * * *
30723806 CTGCCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTCTATAAGCACTCAAATTGGGACGAA
1 CTGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACAAA
* * * * *
30723871 ATTGACTGTTAAGTCAAACT-GT
65 ATAGACTATCATGCCAAACTAGT
* * * * *
30723893 CTTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAACCATTCAAATTAGGACAA
1 C-TGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACAA
30723957 AATAGACTATCATGCCAAACTA
64 AATAGACTATCATGCCAAACTA
30723979 CCCAGCCAAA
Statistics
Matches: 139, Mismatches: 31, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
87 60 0.43
88 77 0.55
89 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (87 bp):
CTGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGACAAAA
TAGACTATCATGCCAAACTAGT
Found at i:30724145 original size:276 final size:277
Alignment explanation
Indices: 30723622--30724148 Score: 644
Period size: 276 Copynumber: 1.9 Consensus size: 277
30723612 CTCCCCTGCC
* * * ** * * * *
30723622 AAAATTTGATTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGGGACGAAATGGA
1 AAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACCATTCAAATTAGGACAAAATAGA
* * * * * * * * * *
30723687 CTGTCTTGTCAAACGAACCTGCTAAACTGCCCTGCCAATATTTGCTTGAATGCAAAATTAAGAGG
66 CTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTGAATACAAAATTAAAAGG
* * * * ** **
30723752 ACATTTCTGTTAGCATTTAAATTGGAACAAAATAGACTATCATGCCAAACTATTCTGCCAAAATT
131 ACATTTCTATAAACATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACCAAAATT
* *
30723817 TGATTTAATGAAAAATTAAGAGGATATTTCTATAAGCACTCAAATTGGGACGAAATTGACTGTTA
196 TGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACGAAATTGACTGTTA
30723882 AGTCAAACTGTCTTGCT
261 AGTCAAACTGTCTTGCT
30723899 AAAATTT-ATTGAATG-ATAAATTAAAAGGACAGTTCTATAACCATTCAAATTAGGACAAAATAG
1 AAAATTTGATTGAATGTA-AAATTAAAAGGACAGTTCTATAACCATTCAAATTAGGACAAAATAG
* * * * *
30723962 ACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTGAATATAAATTTAAAAG
65 ACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTGAATACAAAATTAAAAG
* * * * * *
30724027 GACATTTTTATAAACATTCAAATTGGGACGAAATGGACTGTGATGCCAAACTACCCAACCAAAAT
130 GACATTTCTATAAACATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACCAAAAT
* * *
30724092 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAAT
195 TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACGAAAT
30724149 GGGTTGTCAT
Statistics
Matches: 206, Mismatches: 43, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
275 1 0.00
276 198 0.96
277 7 0.03
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (277 bp):
AAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACCATTCAAATTAGGACAAAATAGA
CTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTGAATACAAAATTAAAAGG
ACATTTCTATAAACATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACCAAAATT
TGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACGAAATTGACTGTTA
AGTCAAACTGTCTTGCT
Found at i:30724167 original size:189 final size:189
Alignment explanation
Indices: 30723809--30729422 Score: 1554
Period size: 202 Copynumber: 29.3 Consensus size: 189
30723799 AACTATTCTG
* * * * * * * *
30723809 CCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTCTATAAGCACTCAAATTGGGACGAAATT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * ** *** * * *
30723874 GACTGTTAAGTCAAACTGTCTTGCTAAAATTT-ATTGAATG-ATAAATTAAAAGGACAGTTCTAT
66 GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTAT
* * * * *
30723937 AACCATTCAAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTA
130 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* ** * * * *
30723997 CCAAAAATTGGTTGAATATAAATTTAA-AAGGACATTTTTATAAACATTCAAATTGGGACGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTCGGACGAAAT
*
30724061 GGACTGTGATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
65 GGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* ** * ** *
30724126 AAGCATTCAATTTGGGACGAAATGGGTTGTCATGTCAAACTACCTTGCCAAACTGCCCTG
130 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * * *
30724186 CTAATATTTGCTTGAATGCAAAATTAAG-AGAACATTTCTATTAGCATTCATATTAGGACGACAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTCGGACGAAAT
* * * * * * ** * * *
30724250 GAACTGTTATACCAAATTGCTCAAAAAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTGT
65 GGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * * * * * * * *
30724315 AAGCATTAAAAATAGGATGAAATGAACTGT-ACTGCCAAATTTCCCAGCCAAACTACTCTG
130 AAGCATTCAAATTGGGACGAAATGGACTGTCA-TGCCAAACTACCCAGCCAAACTGCCCTA
* *
30724375 CC-AAAATTAGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTCAAATTCGGACGAAAA
1 CCAAAAATT-GATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAAT
* * *
30724439 GGAATGTCATGCCAAACTACTCAGCCAAACTGCCCTACCAAAATTTGGTTGAATGCAAATTTAAG
65 GGACTGTCATGCCAAACTA--C--CC--A-------ACCAAAATTTGATTGAATGCAAAATTAAG
* * * *
30724504 AGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGCCATGCGAAACTACCTAGCCAAA
117 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
30724569 CTGCCCTA
182 CTGCCCTA
* *
30724577 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTCGGACGAAATG
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * ** * * * * *
30724642 TAC-GTCATGTCAAACTACCCTATTAATA-TTGCTTGAATGCACAGTTAAGAGGACATTTCTATT
66 GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * * *
30724705 AGAATTTAAATTGGAACGAAATAGACTCTCATGCCAAACTA--C--TC-TACT----T-
131 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * *
30724754 -C--AATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATT-GAGACAAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAAAT
* * * ** * * * * *
30724815 TGATTGTCAAGCCAAACTACCCTGCTAAAA-TTGATTGAGTG-ATAAATTAAGAGAAAATTTCAA
65 GGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTA
* * * * * *
30724878 TAAGCATTCAAATTTGGACATTTTTAAGAGGTTGAATG-CAAAATTAAGCCAAGCTACCCAGACA
129 TAAGCATTCAAATTGGGAC-----GAA-A--TGGACTGTC---A-T--GCCAAACTACCCAGCCA
*
30724942 AACTGCCCTG
180 AACTGCCCTA
* * * * * * * *
30724952 CTAATATTTCAAT-AA-GCATTCACATT--G-GGACATTTCAATAAGC---C-AA----G-C---
1 CCAAAAATTGATTGAATGCA---AAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAA
* ** ** * * * *
30725000 -T--AC-CT-A-GCCAAACTGTCCTGCTAATATTTTG-TTGAATGCAAATTTAAGAGGACATTTT
63 ATGGACTGTCATGCCAAACTACCCAACCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * *
30725058 TATAAGCATTCAAATTGGAACGAAATGGACTATCATGCAAAACTAACCAGCCAAACTGCCCTG
127 TATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * * *
30725121 CCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATC-AATTTGGAATGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGG-ACGAAAT
* * * * * *
30725185 GGATTGTCATGTCAAACTTCCCTGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAG
65 GGACTGTCATGCCAAAC-TACC---C-AA--------CCAAAATTTGATTGAATGCAAAATTAAG
* * * * *
30725250 AGCACATTTATATTAGCATTCAAATTGGGACGAAATGGAC--T-AT--C--ACTACTCTGCCAAA
117 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
*
30725308 AT----T-
182 CTGCCCTA
** * * * * * *
30725311 ----TGATTTAATGAA--AAA--TTAAGAGGACATTTCTATAAACATTTCAAA-TGGGACGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTCGGACGAAAT
* * * ** * *
30725367 TGA-TAGTCAAGCCAAACTGCCC-TGCTAAACTTGATTGAATG-ATAAATTAAGAGGACATTTCT
65 GGACT-GTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCT
* * * ** * *
30725429 ATAAGCATTCAAATTGAGACGAAATGAACTGTCTTGTTAAACTACCCAACCAAACTGCCCTG
128 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * *
30725491 CCAAAATTTTG-TTGAATG-AAAATTTAAGAGGGCATTTTTATAAGCATTTAAATT-GAGACGAA
1 CCAAAA-ATTGATTGAATGCAAAA-TTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAA
* *
30725553 ATAGACTGTCATGCCAAACTACCTAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC--ACTTG
63 ATGGACTGTCATGCCAAACTA-C---CC-AA--------CCAAAATTTGATTGAATGCAAAATT-
* * * * * *
30725616 AAGAGGACATTTTTATAGGCATTCAAATTGGAATGAAATGGACTATCATGCCAAACTACCCAGCA
114 AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCC
*
30725681 AAACTGCGCTA
179 AAACTGCCCTA
* * * ** * *
30725692 CC-AAAATTAATTGAATGCAAAAATAATG-GGGTATTTCTATAAGCATTCAAATTGGGACAAAAT
1 CCAAAAATTGATTGAATGCAAAATTAA-GAAGACATTTCTATAAGCATTCAAATTCGGACGAAAT
* ** *
30725755 GGGCTGTCATGTAAAACTACCCAACCAAACTACCTTGTCAAAATTTGATTGAATGCAAAATTAAC
65 GGACTGTCATGCCAAACTA--C--CC--A--A-C----CAAAATTTGATTGAATGCAAAATTAAG
* * * * * * *
30725820 AGGACATTTCTATAAGTATTCAATTTGGCAAGAAATGGACTGTCATGTCAATCTACCCTGCCAAA
117 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
*
30725885 TTGCCCT-
182 CTGCCCTA
* * * * * * * * * * * *
30725892 TCAAATATTTGCTTGAGTGCAAAATTAAGATGACATTTTTATTAGCTTTTAAATTAGAACGATAT
1 CCAAA-AATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAAT
* * ** * *
30725957 GGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTAT
65 GGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * *
30726022 AAGTATTCAAA-TGTGGACTAAAT----TG-AATG-----TTA---AGCCAAACTGCCCT-
130 AAGCATTCAAATTG-GGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * **
30726068 GCTAAAATTGATTGAAT-AATAAATTAAG-AGCACATTTCTATAAGCATTCAAATTGGGAAAAAA
1 CCAAAAATTGATTGAATGCA-AAATTAAGAAG-ACATTTCTATAAGCATTCAAATTCGGACGAAA
* * *
30726131 TGGAC-GATCATGCCAAACTACCCAGCCAAACTGTAATGCCAAAATTTGGTTGAATGCTAATTTA
64 TGGACTG-TCATGCCAAACT----A-CC---C---AA--CCAAAATTTGATTGAATGCAAAATTA
* * * * * *
30726195 AGAGGACATTTTTATAAGCATTCAAATTGGGATGAAATGGATTGTCATGCAAAACTTCCTAGCCA
115 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* *
30726260 AACTGCCTTG
180 AACTGCCCTA
* * * * * * *
30726270 CC-AAAATTGATTCAAAGCAAAATTAAGAGGAGATTTATATAAACATTCAAATT-GTGACAAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAAAT
* * * ***** * * * ** * *
30726333 GGACAGTCATGCAAAACTACCCAA-CAAAACTACCCAGCAT-TAAATTTGGGATGAAATGGATTC
65 GGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACAT---TTC
* * * ***** * * * * * * **
30726396 TCACGACAAACTTCCCTGCCAATATTTTCTTG-AATGCAAATTTAATAGAACAATCCTA-TTAGC
127 T----ATAAGCAT---T--CAA-ATTGGGACGAAATG-GACTGTCAT-G-CCAA-ACTACCCAGC
* **
30726459 ATTCAAATTG--GGA
178 ---CAAACTGCCCTA
* * * * * * ** *
30726472 -C-AAAATGGATTGTTATTTCAAACTACTT-TGCA-ACAATTTTGTTGAATGAATAATTAAGAGA
1 CCAAAAATTGATTG--AATGCAAA--A-TTAAGAAGAC-A-TTT-CT--AT-AAGCATT----CA
* * * ** * *** * * * * ***
30726533 ACATTTCGGTAAGCATTAAAAT-TGGGGCGAAA-TGGACTGTCATTCCAAACTACTCTGACAAAA
51 A-A-TTCGG-ACGAAATGGACTGTCATGCCAAACT--AC--CCA-ACCAAA--A-TTTGATTGAA
* * * *
30726596 T--ATGATTTAATGCA--ACATTTCTATAAGCATTCAAATTGAGACAAAATGGACTGTCATGCCA
105 TGCA-AAATTAA-G-AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA
* * *
30726657 AACTACCCAGCCAAATTACCCTG
167 AACTACCCAGCCAAACTGCCCTA
* * * * * * * * * **
30726680 CCAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTTAAA-TGGGATAAAAT-
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * * *
30726743 -ATCTGTCATTCCAAACTACCCAGCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAATAAGA
66 GA-CTGTCATGCCAAACTA--C--CC-AA----CC-A--AAATTTGATTGAATGCAAAATTAAGA
* * * * *
30726807 GGACATTTATATCAA-CATTCAAATTGCGACAAAATGGACTATCATGCAAAACTACCCTA-CCAA
118 GGACATTTCTAT-AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCC-AGCCAA
*
30726870 ACTGCCCTG
181 ACTGCCCTA
* * * * * * * *
30726879 CCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTTTATAAGCATTC-AATTTGAGACGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAAAT
* * * ** * ** *
30726943 GGATTGTTATGTCATACTGCCCTAACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAG
65 GGA-----CTGTC--A-TG--C---CAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAG
** * * * *
30727008 AAAACATTTCTATTAA-CATTCAAATTGGAACGAAATGGACTGTTATGTC--A-T----A--C-T
117 AGGACATTTCTA-TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
*
30727062 A-T-TCCT-
181 ACTGCCCTA
* * * * **
30727068 CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATG
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * ** * * * * *
30727133 GACTTTAATGCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATA
66 GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * *
30727198 AGCATTCAAATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTG
131 AGCATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * *
30727257 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTC-AATTTGAGACGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAAAT
* * * *
30727321 GGATTGTCATGTCAAACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAA
65 GGACTGTCATGCCAAACTA--C--CC-AA--------CCAAAATTTGATTGAA-TGCAAAATTAA
* * * * *
30727385 GAGAACATTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAA-T---------T
116 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
30727440 ACT---CTA
181 ACTGCCCTA
* * * *
30727446 CCAAAAATTTGATTTAATGAAAAATTAA-AAGGACATTTCTATAAGCATTCAAATTGGGAAGAAA
1 CCAAAAA-TTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTCGGACGAAA
* * * ** *** * * ** *
30727510 TTGACTATCAAGCCAAACTGTCTTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTA
64 TGGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
30727574 TAAACATTCAAATTGGGACGAAAAGGACTGTCAAGTCAAACTACTCC-TCCAAACTGCACTG
129 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CCAGCCAAACTGCCCTA
*
30727635 CCAAAATTTTG-TTGAATG-ATAAATTAA-AAGGACATTTCTATAAGCATTCAAATT-GAGACGA
1 CCAAAA-ATTGATTGAATGCA-AAATTAAGAA-GACATTTCTATAAGCATTCAAATTCG-GACGA
* * * *
30727696 AAAGGACTGTTATGCCAAACTACTCAGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTT
62 AATGGACTGTCATGCCAAACTA--C--CC-AA--------CCAAAATTTGATTGAATGCAAAATT
* * * *
30727761 AAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTACCCAGCC
114 AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCC
* *
30727826 AAACTGCCTTG
179 AAACTGCCCTA
* * * * * *
30727837 CCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAATTTCGTACAAAATG
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * * * *
30727902 TACTATCATGTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAA
66 GACTGTCATGCCAAACTA--C--CC--A--A-CC-A--AA-ATTTGATTGAATGCAAAATTAAGA
* * * *
30727967 GGACATTTCTATTAGAATTTAAATTGGGACGAAATGGACTCTCATGCCAAACT----------AC
118 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
30728022 T---CTA
183 TGCCCTA
** * * * * * * *
30728026 CTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACGAAATT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * *** * * * * *
30728091 GATTGTCAAGCCAAACTGCCTTGCTAAAA-TTAATTAAATG-ATAAATTAAGAGAAAATTTCTAT
66 GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTAT
* * *
30728154 AAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTG
130 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * * * * * *
30728214 CTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATTCATATT-GGAATGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGG-ACGAAAT
30728278 GGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
65 GGACTGTCATGCCAAACTA-C---CC-AA--------CCAAAATTTGATTGAATGCAAAATTAAG
* * * * * * * * *
30728343 AGGACATTTCTATGAGTAATCAATTTGGAACGAAATGGATTGTCATGTCAATA-TTCTCTAG-CA
117 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA-ACTAC-CCAGCCA
*
30728406 AACTGCCCTG
180 AACTGCCCTA
* * * * * * *
30728416 CC-AATATTTACTTCAATACAAAATTAAG-AGCACATTTCTATTAGTATTCAAATTGGGACGGAA
1 CCAAAAATTGA-TTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTCGGAC-GAA
* * ** * *
30728479 A-GGACTGTCATGCCAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCT
63 ATGGACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
30728543 ATAAGCATTTAAAATGGGACGAAATTGA-TAGTCAAGCCAAACT-----G-C--TCTG--CT-
128 ATAAGCATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTGCCCTA
*
30728594 ---AAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GAGACGAAA
1 CCAAAAATTGATTGAATGCA-AAATTAAGAAGACATTTCTATAAGCATTCAAATTCG-GACGAAA
* * * * * *
30728654 TGGACTATCTTGCCAAAATACCCAACCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAA
64 TGGACTGTCATGCCAAACTA--C--CC-AA--------CCAAAATTTGATTGAATGCAAAATTAA
* * * * * * * *
30728719 GAGGACATTTTTATAAGAATTTATATTGAGATGAAATGGACTGTCATGCCAAACTAACAAGCCAA
116 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
* *
30728784 ATTGCCCTG
181 ACTGCCCTA
* ** * * * * *
30728793 CCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCATTCAAATTAGGATGAAAT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACA-TTTCTATAAGCATTCAAATTCGGACGAAAT
* * * * **
30728856 AGACTGTCATGCCAAACTACCCAGCCAAACTGCGCTACCAAAATGAATTGAATGCAAAAATAATT
65 GGACTGTCATGCCAAACTACCCAACCAAAAT----T-------TG-ATTGAATGCAAAATTAAGA
** * * * *
30728921 GGGTATTTCTATAAGCATTCAAATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAACCAAAC
118 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
* *
30728986 TGCCTTG
183 TGCCCTA
* * * * * * *
30728993 TCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCATTC-AATTTGGCAAGAAA
1 CCAAAAATTGATTGAAT-GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGG-ACGAAA
* *
30729056 TGGATTGCCATGTCGAACTACCCTGCCAAACTACCCAA-CAAATATTTGCTTGAGTGCAAAATTA
64 TGGA----C-TGT----C-A---TGCCAAACTACCCAACCAAA-ATTTGATTGAATGCAAAATTA
* * * * *
30729120 AAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGTCATGCCAAACT---------
115 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* *
30729176 -ACT---TTG
180 AACTGCCCTA
* * * * * * * *
30729182 GCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
* * * ** * *
30729247 GAATGTCAAGCCAAACTGCCCTGCTAAAA-TTGATTGAATG-ATAAATTAAAAGGACATTTCTAT
66 GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTAT
* * * * ** *
30729310 AAGCATTCAATTTGGGACAAAATGGACGGTTATGCCAAACTACCCAGCCAAACTATCCTG
130 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * *
30729370 CCAAAATTTGGTTAAATGCAAATTTAAG-AGAACATTT-TTTAAGCATTCAAATT
1 CCAAAAATTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATT
30729423 TGCTTGAAAT
Statistics
Matches: 3998, Mismatches: 939, Indels: 979
0.68 0.16 0.17
Matches are distributed among these distances:
167 1 0.00
168 59 0.01
169 32 0.01
170 4 0.00
171 17 0.00
172 1 0.00
173 1 0.00
174 71 0.02
175 310 0.08
176 163 0.04
177 13 0.00
178 4 0.00
179 11 0.00
180 5 0.00
181 26 0.01
182 83 0.02
183 19 0.00
184 18 0.00
185 15 0.00
186 26 0.01
187 102 0.03
188 430 0.11
189 671 0.17
190 80 0.02
191 11 0.00
192 20 0.01
193 27 0.01
194 9 0.00
195 16 0.00
196 9 0.00
197 9 0.00
198 24 0.01
199 143 0.04
200 194 0.05
201 359 0.09
202 805 0.20
203 34 0.01
204 10 0.00
205 12 0.00
206 21 0.01
207 3 0.00
208 10 0.00
209 10 0.00
210 17 0.00
211 10 0.00
212 8 0.00
213 4 0.00
214 23 0.01
215 2 0.00
216 9 0.00
217 12 0.00
219 2 0.00
221 8 0.00
223 2 0.00
224 11 0.00
225 1 0.00
226 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (189 bp):
CCAAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTCGGACGAAATG
GACTGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
Found at i:30724177 original size:88 final size:88
Alignment explanation
Indices: 30723983--30724169 Score: 239
Period size: 88 Copynumber: 2.1 Consensus size: 88
30723973 AAACTACCCA
* * * * * *
30723983 GCCAAACTGCCCTACCAAAAATTGGTTGAATATAAATTTAAAAGGACATTTTTATAAACATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTGAATACAAAATTAAAAGGACATTTCTATAAACATTCAA
*
30724048 ATTGGGACGAAATGGACTGTGAT
66 ATTGGGACGAAATGGACTGTCAT
* * * *
30724071 GCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTGAATACAAAATTAAAAGGACATTTCTATAAACATTCAA
* **
30724136 TTTGGGACGAAATGGGTTGTCAT
66 ATTGGGACGAAATGGACTGTCAT
*
30724159 GTCAAACTACC
1 GCCAAACTACC
30724170 TTGCCAAACT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (88 bp):
GCCAAACTACCCAACCAAAAATTGATTGAATACAAAATTAAAAGGACATTTCTATAAACATTCAA
ATTGGGACGAAATGGACTGTCAT
Found at i:30724724 original size:86 final size:87
Alignment explanation
Indices: 30724563--30724896 Score: 284
Period size: 87 Copynumber: 3.8 Consensus size: 87
30724553 AAACTACCTA
* *** * *
30724563 GCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* *
30724628 TTTCGGACGAAAT-GTAC-GTCAT
66 ATT-GGACGAAATAG-ACTCTCAT
* * * * * *
30724650 GTCAAACTACCCTA-TT-AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTA
1 GCCAAACTACCCTACTTCAAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCA
30724713 AATTGGAACGAAATAGACTCTCAT
65 AATTGG-ACGAAATAGACTCTCAT
* * * *
30724737 GCCAAACTACTCTACTTCAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* * * * *
30724802 ATTGAGACAAAATTGATTGTCAA
66 ATTG-GACGAAATAGACTCTCAT
* * * * * * * *
30724825 GCCAAACTACCCTGC-TAAAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCA
30724888 AATTTGGAC
65 AA-TTGGAC
30724897 ATTTTTAAGA
Statistics
Matches: 200, Mismatches: 38, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
85 5 0.03
86 49 0.25
87 72 0.36
88 70 0.35
89 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (87 bp):
GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
ATTGGACGAAATAGACTCTCAT
Found at i:30724789 original size:88 final size:84
Alignment explanation
Indices: 30724581--30724896 Score: 260
Period size: 88 Copynumber: 3.6 Consensus size: 84
30724571 GCCCTACCAA
* * * *
30724581 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTCGGACGAAATGTACG
1 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATT-GGACGAAATGTACC
*
30724646 TCATGTCAAACTACCCTATT
65 TCATGCCAAACTACCCTATT
* * * * *
30724666 AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTAAATTGGAACGAAATAG-A
1 AAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGG-ACGAAAT-GTA
*
30724730 CTCTCATGCCAAACTACTCTACTT
63 C-CTCATGCCAAACTACCCTA-TT
* * * *
30724754 CAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGAGACAAAAT-TGA
1 -AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTG-GACGAAATGT-A
** * * *
30724818 TTGTCAAGCCAAACTACCCTGCTA
63 -CCTCATGCCAAACTACCCT-ATT
* * * * * *
30724842 AAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCAAATTTGGAC
1 AATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCAAA-TTGGAC
30724897 ATTTTTAAGA
Statistics
Matches: 185, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
85 5 0.03
86 49 0.26
87 59 0.32
88 68 0.37
89 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (84 bp):
AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGGACGAAATGTACCT
CATGCCAAACTACCCTATT
Found at i:30725148 original size:101 final size:100
Alignment explanation
Indices: 30725005--30725294 Score: 321
Period size: 101 Copynumber: 2.9 Consensus size: 100
30724995 CAAGCTACCT
* * * * *
30725005 AGCCAAACTGTCCTGCTAATATTTTGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAA-AATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
30725070 AATTGGAACGAAATGGACTATCATG-CAAAACTAACC
65 AATTGGAACGAAATGGACTATCATGTC-AAACTAACC
* * * * *
30725106 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
* * * * **
30725171 ATTTGGAATGAAATGGATTGTCATGTCAAACTTCCC
65 AATTGGAACGAAATGGACTATCATGTCAAACTAACC
* * * * * * *
30725207 TGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTATATTAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
*
30725272 AATTGGGACGAAATGGACTATCA
65 AATTGGAACGAAATGGACTATCA
30725295 CTACTCTGCC
Statistics
Matches: 155, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
100 5 0.03
101 149 0.96
102 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (100 bp):
AGCCAAACTGCCCTGCCAAAATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAA
ATTGGAACGAAATGGACTATCATGTCAAACTAACC
Found at i:30725360 original size:81 final size:85
Alignment explanation
Indices: 30725210--30725454 Score: 243
Period size: 81 Copynumber: 2.9 Consensus size: 85
30725200 ACTTCCCTGA
* * * * * *
30725210 CAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTATATTAGCATTCAAAT
1 CAAACT-CC-TGCCAAAATTTGATTCAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
30725275 TGGGACGAAATGGACTA-TC-A-
64 TGGGACGAAATGGA-TAGTCAAC
* * *
30725295 C-TACT-CTGCCAAAATTTGATTTAATGAAAAATTAAGAGGACATTTCTATAAACATTTCAAA-T
1 CAAACTCCTGCCAAAATTTGATTCAATGAAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATT
*
30725357 GGGACGAAATTGATAGTCAAGC
65 GGGACGAAATGGATAGTCAA-C
* * * *
30725379 CAAACTGCCCTG-CTAAACTTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAAT
1 CAAACT--CCTGCCAAAATTTGATTCAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
*
30725443 TGAGACGAAATG
64 TGGGACGAAATG
30725455 AACTGTCTTG
Statistics
Matches: 132, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
80 2 0.02
81 55 0.42
82 8 0.06
84 4 0.03
85 4 0.03
86 6 0.05
87 50 0.38
88 3 0.02
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (85 bp):
CAAACTCCTGCCAAAATTTGATTCAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
GGACGAAATGGATAGTCAAC
Found at i:30725552 original size:101 final size:100
Alignment explanation
Indices: 30725376--30728021 Score: 1197
Period size: 101 Copynumber: 27.0 Consensus size: 100
30725366 TTGATAGTCA
* *
30725376 AGCCAAACTGCCCTG-CTAAACTTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTC
* * *
30725439 AAATTGAGACGAAATGAACTGTCTTGTTAAACTACCC
65 AAATTG-GACGAAATGGACTGTCATGTCAAACTACCC
* * *
30725476 AACCAAACTGCCCTGCCAAAATTTTG-TTGAATG-AAAATTTAAGAGGGCATTTTTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAA-TTAAGAGGACATTTCTATAAGCATT
* * * *
30725539 TAAATTGAGACGAAATAGACTGTCATGCCAAACTACCT
64 CAAATTG-GACGAAATGGACTGTCATGTCAAACTACCC
* * * *
30725577 AGCCAAATTGCCCTGCCAAAATTTGATTGAATGC--ACTTGAAGAGGACATTTTTATAGGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTC
* * *
30725640 AAATTGGAATGAAATGGACTATCATGCCAAACTACCC
65 AAATTGG-ACGAAATGGACTGTCATGTCAAACTACCC
* * * * * **
30725677 AGCAAAACTGCGCTACCAAAA-TTAATTGAATGCAAAAATAATG-GGGTATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAA-GAGGACATTTCTATAAGCATTC
* * *
30725740 AAATTGGGACAAAATGGGCTGTCATGTAAAACTACCC
65 AAATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * * * * *
30725777 AACCAAACTACCTTGTCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
30725842 ATTTGGCAAGAAATGGACTGTCATGTCAATCTACCC
66 AATTGG-ACGAAATGGACTGTCATGTCAAACTACCC
* * * * * * * * * *
30725878 TGCCAAATTGCCCT-TCAAATATTTGCTTGAGTGCAAAATTAAGATGACATTTTTATTAGCTTTT
1 AGCCAAACTGCCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
30725942 AAATTAGAACGATATGGAC--T-A--TC--A-T----
65 AAATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * * * *
30725967 -GCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
30726031 AATGTGGACTAAAT----TG-AATGT-----TA---
66 AAT-TGGACGAAATGGACTGTCATGTCAAACTACCC
* *** *
30726054 AGCCAAACTGCCCTGCTAAAA-TTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
** *
30726118 AATTGGGAAAAAATGGAC-GATCATGCCAAACTACCC
66 AATT-GGACGAAATGGACTG-TCATGTCAAACTACCC
*** * * * *
30726154 AGCCAAACTGTAATGCCAAAATTTGGTTGAATGCTAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
30726219 AATTGGGATGAAATGGATTGTCATG-CAAAACTTCCT
66 AATT-GGACGAAATGGACTGTCATGTC-AAACTACCC
* * * * * *
30726255 AGCCAAACTGCCTTGCCAAAA-TTGATTCAAAGCAAAATTAAGAGGAGATTTATATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
30726319 AATTGTGACAAAATGGACAGTCATG-CAAAACTACCC
66 AATTG-GACGAAATGGACTGTCATGTC-AAACTACCC
* * * * * *** * * * * * **
30726355 AACAAAACTACCCAG-CATTAAATTTGGGA-TGAAATGGATTCTCACGA-CAAACTTCCCT--GC
1 AGCCAAACTGCCCTGCCA--AAATTT--GATTG-AATGCAAAATTAAGAGGACATTTCTATAAG-
**** * * ** * * * ** * *
30726415 CAATATTTTCTTGAATGCAAATTTAATAGAACA-ATCCTATTA-GC
60 C-AT-TCAAATTGGACG-AAATGGACT-G-TCATGTCAAACTACCC
** * * * * * * * * *
30726459 ATTCAAATTG---GGACAAAA-TGGATTGTTATTTCAAACTACTT-TGCA--ACAATTT-TGT-T
1 AGCCAAACTGCCCTGCCAAAATTTGATTG--AATGCAAA--A-TTAAG-AGGAC-ATTTCTATAA
* ** * * * ***
30726515 GAATGAATAATTAAGA-GAACATTTCGGTA-AG-CAT-T-AAAAT-TGG
59 GCATTCA-AATT-GGACGAA-A--T-GG-ACTGTCATGTCAAACTACCC
* * * * * * *** * *
30726558 GGCGAAATGGACTGTCATTCCAAACTACTCTGACAAAAT--ATGATTTAATGCA--ACATTTCTA
1 AGC-CAA---ACTGCCCTGCCAAA--A-TTTGATTGAATGCA-AAATTAA-G-AGGACATTTCTA
* *
30726619 TAAGCATTCAAATTGAGACAAAATGGACTGTCATGCCAAACTACCC
56 TAAGCATTCAAATTG-GACGAAATGGACTGTCATGTCAAACTACCC
* * * * * * * *
30726665 AGCCAAATTACCCTGCCAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* **
30726730 AATGGGATAAAAT--ATCTGTCAT-TCCAAACTACCC
66 AATTGGACGAAATGGA-CTGTCATGT-CAAACTACCC
* * * * * *
30726764 AGCCAAATTGCCCTACCAAAA-TTGATTGAAAGTAAAAATAAGAGGACATTTATATCAA-CATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTC
* *
30726827 AAATTGCGACAAAATGGACTATCATG-CAAAACTACCC
65 AAATTG-GACGAAATGGACTGTCATGTC-AAACTACCC
* * * * *
30726864 TA-CCAAACTGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTTTATAAGCATTC
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
30726928 AATTTGAGACGAAATGGATTGTTATGTCATACTGCCC
65 AAATTG-GACGAAATGGACTGTCATGTCAAACTACCC
* * * ** * **
30726965 TA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATT
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATT
*
30727028 CAAATTGGAACGAAATGGACTGTTATGTC--A-T----
64 CAAATTGG-ACGAAATGGACTGTCATGTCAAACTACCC
* * *
30727059 A--C-TA-T-TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
**
30727118 AATTGGGAAAAAATGGAC--T--T-T--AA-T----
66 AATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * * * * * *
30727142 -GCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
*
30727206 AATTGGGACAAAATGGA-TAGTCATG-CAAAACTACCC
66 AATT-GGACGAAATGGACT-GTCATGTC-AAACTACCC
* * *
30727242 AACCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
30727307 ATTTGAGACGAAATGGATTGTCATGTCAAACTAGCC
66 AATTG-GACGAAATGGACTGTCATGTCAAACTACCC
* * * * * *
30727343 TGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTATTAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
30727407 AAATTGGGACGAAATAGACTG---T-T---A-T----
65 AAATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * * * * * *
30727432 -GCCAAATTACTCTACCAAAAATTTGATTTAATGAAAAATTAAAAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCC-AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
30727496 AAATTGGGAAGAAATTGAC--T-A--T----C-A---
65 AAATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * * * ** * *
30727520 AGCCAAACTGTCTTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
30727584 AATTGGGACGAAAAGGACTGTCAAGTCAAACTACTCC
66 AATT-GGACGAAATGGACTGTCATGTCAAACTAC-CC
* * *
30727621 -TCCAAACTGCACTGCCAAAATTTTG-TTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
* * * *
30727683 CAAATTGAGACGAAAAGGACTGTTATGCCAAACTACTC
64 CAAATTG-GACGAAATGGACTGTCATGTCAAACTACCC
** * * *
30727721 AGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
30727786 AATTGGGACAAAATTGACTGTCATG-CGAAACTACCC
66 AATT-GGACGAAATGGACTGTCATGTC-AAACTACCC
* * * *
30727822 AGCCAAACTGCCTTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * *
30727887 ATTTCGTACAAAATGTACTATCATGTCAAACTACCC
66 AATT-GGACGAAATGGACTGTCATGTCAAACTACCC
* * *** * * * * * * *
30727923 TGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
30727988 AATTGGGACGAAATGGACTCTCATGCCAAACTAC
66 AATT-GGACGAAATGGACTGTCATGTCAAACTAC
30728022 TCTACTTAAA
Statistics
Matches: 1934, Mismatches: 436, Indels: 351
0.71 0.16 0.13
Matches are distributed among these distances:
83 3 0.00
84 2 0.00
86 5 0.00
87 105 0.05
88 203 0.10
89 75 0.04
90 4 0.00
91 1 0.00
92 6 0.00
93 3 0.00
94 1 0.00
95 2 0.00
96 4 0.00
97 6 0.00
98 42 0.02
99 74 0.04
100 335 0.17
101 924 0.48
102 34 0.02
103 23 0.01
104 32 0.02
105 8 0.00
106 28 0.01
107 9 0.00
108 3 0.00
110 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (100 bp):
AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
AATTGGACGAAATGGACTGTCATGTCAAACTACCC
Found at i:30726146 original size:87 final size:89
Alignment explanation
Indices: 30725955--30726160 Score: 224
Period size: 87 Copynumber: 2.3 Consensus size: 89
30725945 TTAGAACGAT
* * * *
30725955 ATGGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCT
1 ATGGACGATCATGCCAAACTACCCTGCCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCT
* *
30726020 ATAAGTATTCAAATGTGGACTAAA
66 ATAAGCATTCAAATGTGGACAAAA
* * * * * * * *
30726044 TTGAATG-TTAAGCCAAACTGCCCTGCTAAAA-TTGATTGAAT-AATAAATTAAGAGCACATTTC
1 ATGGACGATCATGCCAAACTACCCTGCCAAAATTTGATTGAATGAA-AAATTAAGAGAACATTTC
30726106 TATAAGCATTCAAAT-TGGGA-AAAA
65 TATAAGCATTCAAATGT-GGACAAAA
*
30726130 ATGGACGATCATGCCAAACTACCCAGCCAAA
1 ATGGACGATCATGCCAAACTACCCTGCCAAA
30726161 CTGTAATGCC
Statistics
Matches: 92, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
86 9 0.10
87 61 0.66
88 19 0.21
89 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (89 bp):
ATGGACGATCATGCCAAACTACCCTGCCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCT
ATAAGCATTCAAATGTGGACAAAA
Found at i:30726321 original size:678 final size:671
Alignment explanation
Indices: 30725053--30726363 Score: 1744
Period size: 678 Copynumber: 1.9 Consensus size: 671
30725043 TTAAGAGGAC
* * * *
30725053 ATTTTTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCAAAACTAACCAGCCAAACTGCC
1 ATTTCTATAAGCATTCAAATTGGAACAAAATGGACTATCATGCAAAACTAACCAACCAAACTACC
* * *
30725118 CTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAATGAA
66 CTGCCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTAATCAATTTGGAATGAA
* * *
30725183 ATGGATTGTCATGTCAAACTTCCCTGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTA
131 ATGGACTGTCATGTCAAACTACCCTGACAAACTGCCTTGCAAATATTTGCTTCAATGCAAAATTA
* *
30725248 AGAGCACATTTATATTAGCATTCAAATTGGGACGAAATGGACTATCACTACTCTGCCAAAATTTG
196 AGAGCACATTTATATTAGCATTCAAATTAGAACGAAATGGACTATCACTACTCTGCCAAAATTTG
*
30725313 ATTTAATGAAAAATTAAGAGGACATTTCTATAAACATTTCAAATGGGACGAAATTGATAGTCAAG
261 ATTTAATGAAAAATTAAGAGAACATTTCTATAAACATTTCAAATGGGACGAAATTGATAGTCAAG
* * *
30725378 CCAAACTGCCCTGCTAAACTTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAAT
326 CCAAACTGCCCTGCTAAAATTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCATTCAAAT
** * ** ** *
30725443 TGAGACGAAATGAACTGTCTTGTTAAACTACCCAACCAAACTGCCCTGCCAAAATTTTGTTGAAT
391 TGAGAAAAAATGAACTGTCATGCCAAACTACCCAACCAAACTGCAATGCCAAAATTTGGTTGAAT
* * *
30725508 GAAAATTTAAGAGGGCATTTTTATAAGCATTTAAATTGAGACGAAATAGACTGTCATGCCAAACT
456 GAAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGAGACGAAATAGACTGTCATGCAAAACT
* * * * * **
30725573 ACCTAGCCAAATTGCCCTGCCAAAATTTGATTGAATGCACTTGAAGAGGACATTTTTATAGGCAT
521 ACCTAGCCAAACTGCCCTGCCAAAATTTGATTCAAAGCAATTGAAGAGGACATTTATATAAACAT
* *
30725638 TCAAATTG-GA-ATGAAATGGACTA-TCATGCCAAACTACCCAGCAAAACTGCGCTACCAAAATT
586 TCAAATTGTGACA--AAATGGAC-AGTCATGCAAAACTACCCAACAAAACTGCGCTACCAAAATT
30725700 AATTGAATGCAAAAATAATGGGGT
648 AATTGAATGCAAAAATAATGGGGT
* * * * *
30725724 ATTTCTATAAGCATTCAAATTGGGACAAAATGGGCTGTCATGTAAAACTACCCAACCAAACTACC
1 ATTTCTATAAGCATTCAAATTGGAACAAAATGGACTATCATGCAAAACTAACCAACCAAACTACC
* * *
30725789 TTGTCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCAATTTGGCAA-GA
66 CTGCCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTAATCAATTTGG-AATGA
* * * * *
30725853 AATGGACTGTCATGTCAATCTACCCTGCCAAATTGCCCTT-CAAATATTTGCTTGAGTGCAAAAT
130 AATGGACTGTCATGTCAAACTACCCTGACAAACTG-CCTTGCAAATATTTGCTTCAATGCAAAAT
* * * *
30725917 TAAGATG-ACATTTTTATTAGCTTTTAAATTAGAACGATATGGACTATCATGCCAAACTACTCTG
194 TAAGA-GCACATTTATATTAGCATTCAAATTAGAACGAAATGGAC--T-AT--C--ACTACTCTG
* ** *
30725981 CCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTA-TTCAAATGTGGACTAAAT
251 CCAAAATTTGATTTAATGAAAAATTAAGAGAACATTTCTATAAACATTTCAAATG-GGACGAAAT
*
30726045 TGA-ATGTTAAGCCAAACTGCCCTGCTAAAATTGATTGAATAATAAATTAAGAGCACATTTCTAT
315 TGATA-GTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATAATAAATTAAGAGCACATTTCTAT
* * * *
30726109 AAGCATTCAAATTGGGAAAAAATGGAC-GATCATGCCAAACTACCCAGCCAAACTGTAATGCCAA
379 AAGCATTCAAATTGAGAAAAAATGAACTG-TCATGCCAAACTACCCAACCAAACTGCAATGCCAA
** * * * *
30726173 AATTTGGTTGAATGCTAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGATGAAATGGATT
443 AATTTGGTTGAATGAAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGAGACGAAATAGACT
* *
30726238 GTCATGCAAAACTTCCTAGCCAAACTGCCTTGCCAAAA-TTGATTCAAAGCAAAATT-AAGAGGA
508 GTCATGCAAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTCAAAGC--AATTGAAGAGGA
*
30726301 GATTTATATAAACATTCAAATTGTGACAAAATGGACAGTCATGCAAAACTACCCAACAAAACT
571 CATTTATATAAACATTCAAATTGTGACAAAATGGACAGTCATGCAAAACTACCCAACAAAACT
30726364 ACCCAGCATT
Statistics
Matches: 551, Mismatches: 71, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
671 198 0.36
672 7 0.01
673 1 0.00
674 2 0.00
676 1 0.00
677 21 0.04
678 315 0.57
679 5 0.01
680 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (671 bp):
ATTTCTATAAGCATTCAAATTGGAACAAAATGGACTATCATGCAAAACTAACCAACCAAACTACC
CTGCCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTAATCAATTTGGAATGAA
ATGGACTGTCATGTCAAACTACCCTGACAAACTGCCTTGCAAATATTTGCTTCAATGCAAAATTA
AGAGCACATTTATATTAGCATTCAAATTAGAACGAAATGGACTATCACTACTCTGCCAAAATTTG
ATTTAATGAAAAATTAAGAGAACATTTCTATAAACATTTCAAATGGGACGAAATTGATAGTCAAG
CCAAACTGCCCTGCTAAAATTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCATTCAAAT
TGAGAAAAAATGAACTGTCATGCCAAACTACCCAACCAAACTGCAATGCCAAAATTTGGTTGAAT
GAAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGAGACGAAATAGACTGTCATGCAAAACT
ACCTAGCCAAACTGCCCTGCCAAAATTTGATTCAAAGCAATTGAAGAGGACATTTATATAAACAT
TCAAATTGTGACAAAATGGACAGTCATGCAAAACTACCCAACAAAACTGCGCTACCAAAATTAAT
TGAATGCAAAAATAATGGGGT
Found at i:30726362 original size:13 final size:13
Alignment explanation
Indices: 30726344--30726368 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30726334 GACAGTCATG
30726344 CAAAACTACCCAA
1 CAAAACTACCCAA
30726357 CAAAACTACCCA
1 CAAAACTACCCA
30726369 GCATTAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACTACCCAA
Found at i:30726511 original size:88 final size:88
Alignment explanation
Indices: 30726419--30726586 Score: 194
Period size: 88 Copynumber: 1.9 Consensus size: 88
30726409 CCCTGCCAAT
* * * * * *
30726419 ATTTTCTTGAATGCAA-ATTTAATAGAACAATCCTATTAGCATTCAAATTGGGACAAAATGGATT
1 ATTTTCTTGAATG-AATAATTAAGAGAACAATCCGATAAGCATTAAAATTGGGACAAAATGGACT
* *
30726483 GTTATTTCAAACTACTTTGCAACA
65 GTCATTCCAAACTACTTTGCAACA
* * * * * *
30726507 ATTTTGTTGAATGAATAATTAAGAGAACATTTCGGTAAGCATTAAAATTGGGGCGAAATGGACTG
1 ATTTTCTTGAATGAATAATTAAGAGAACAATCCGATAAGCATTAAAATTGGGACAAAATGGACTG
30726572 TCATTCCAAACTACT
66 TCATTCCAAACTACT
30726587 CTGACAAAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
87 2 0.03
88 63 0.97
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (88 bp):
ATTTTCTTGAATGAATAATTAAGAGAACAATCCGATAAGCATTAAAATTGGGACAAAATGGACTG
TCATTCCAAACTACTTTGCAACA
Found at i:30727165 original size:88 final size:89
Alignment explanation
Indices: 30726975--30727222 Score: 283
Period size: 88 Copynumber: 2.8 Consensus size: 89
30726965 TAACAAATTG
** * **
30726975 CCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATTCAAATT-GGAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGGAA
* *
30727038 CGAAATGGACTGTTATGTCATACTAT
65 -AAAATGGACTGTTATGCCATACTAT
* * *
30727064 TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
30727128 AAATGGACT-TTAATGCCA-AGCTA-
66 AAATGGACTGTT-ATGCCATA-CTAT
* * * * *
30727151 CCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
30727216 AAATGGA
66 AAATGGA
30727223 TAGTCATGCA
Statistics
Matches: 136, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
87 9 0.07
88 120 0.88
89 7 0.05
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (89 bp):
CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
AAATGGACTGTTATGCCATACTAT
Found at i:30727765 original size:378 final size:374
Alignment explanation
Indices: 30726765--30727819 Score: 1235
Period size: 378 Copynumber: 2.8 Consensus size: 374
30726755 AAACTACCCA
* * * * * * * *
30726765 GCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAATAAGAGGACATTTATATCAACATTCAAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
* * ** *
30726830 TTGCGACAAAATGGACTATCATGCAAAACTACCCTACCAAACTGCCCTGCCAAAATTTAATTAAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCT-CCAAACTGCCCTGCCAAAATTTTGTTGAA
* * *
30726895 TGGAAAATTAAGAGGGCATTTTTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCATAC
130 T-GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAAC
* * * * * * *
30726960 TGCCCTA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA
194 T-ACC-AGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAG
* * * * *
30727024 CATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATTCCTCCAAAATTTGATTGAATGAAA
257 CATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCTCCAAAATTTGATTGAATGAAA
* *
30727089 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTTAAT
322 AATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTCAAT
* * * * * *
30727142 GCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAA
1 GCCAAACTACCCTGCCAA-AATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAA
* *
30727207 ATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAA-TTTGATT
65 ATTGGGACAAAATGGACT-GTCATGCAAAACTACCC-TCCAAACTGCCCTGCCAAAATTTTG-TT
* *
30727270 GAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGTCA
127 GAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCA
* *
30727335 AACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTAT
191 AACTA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAA-TGCAAAATTAAGAGAACATTTCTAT
* *
30727399 TAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAATTACT-CTACCAAAAATTTGATTTAA
254 TAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCT-CC-AAAATTTGATTGAA
* *
30727463 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATTGACTATCAA-
317 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TCAAT
** * * * * *
30727521 GCCAAACTGTCTTGCTAAAATTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
* *
30727586 TTGGGACGAAAA-GGACTGTCAAGTC-AAACTACTCCTCCAAACTGCACTGCCAAAATTTTGTTG
66 TTGGGAC-AAAATGGACTGTCATG-CAAAACTAC-CCTCCAAACTGCCCTGCCAAAATTTTGTTG
* * * * *
30727649 AATGATAAATTAAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTATGCCAA
128 AATGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAA
* ** * * * * *
30727714 ACTACTCAGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAA
192 ACTAC-CAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTA
* * * *
30727779 GCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTAC
256 GCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTAC
30727820 CCAGCCAAAC
Statistics
Matches: 576, Mismatches: 83, Indels: 37
0.83 0.12 0.05
Matches are distributed among these distances:
377 23 0.04
378 461 0.80
379 89 0.15
380 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (374 bp):
GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
TTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTGTTGAAT
GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAACTA
CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAGCATT
CAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCTCCAAAATTTGATTGAATGAAAAATT
AAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTCAAT
Found at i:30728085 original size:88 final size:87
Alignment explanation
Indices: 30727923--30728197 Score: 272
Period size: 88 Copynumber: 3.1 Consensus size: 87
30727913 CAAACTACCC
* * * * * *
30727923 TGCCAAACTACCCTA-TTAATATTTGCTTGAATGCAAAGTTAA-AAGGACATTTCTATTAGAATT
1 TGCCAAACTA-CCTACTTAA-ATTTGATTAAATACAAAATTAAGAA-GACAATTCTATAAGAATT
* * *
30727986 TAAATTGGGACGAAATGGACTCTCA
63 CAAATTGGGACGAAATTGACTGTCA
* *
30728011 TGCCAAACTACTCTACTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCA
1 TGCCAAACTAC-CTACTTAAATTTGATTAAATACAAAATTAAGAAGACAATTCTATAAGAATTCA
*
30728076 AATTGGGACGAAATTGATTGTCA
65 AATTGGGACGAAATTGACTGTCA
* * * * * * * *
30728099 AGCCAAACTGCCTTGC-TAAAATTAATTAAATGA-TAAATTAAG-AGAAAATTTCTATAAGCATT
1 TGCCAAACTACC-TACTTAAATTTGATTAAAT-ACAAAATTAAGAAGACAA-TTCTATAAGAATT
30728161 CAAATTGGGACGAAATTGACTGTCA
63 CAAATTGGGACGAAATTGACTGTCA
30728186 TGCCAAACTACC
1 TGCCAAACTACC
30728198 AAGCCAAACT
Statistics
Matches: 158, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 5 0.03
87 68 0.43
88 79 0.50
89 6 0.04
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (87 bp):
TGCCAAACTACCTACTTAAATTTGATTAAATACAAAATTAAGAAGACAATTCTATAAGAATTCAA
ATTGGGACGAAATTGACTGTCA
Found at i:30728196 original size:377 final size:378
Alignment explanation
Indices: 30727759--30729424 Score: 1329
Period size: 377 Copynumber: 4.3 Consensus size: 378
30727749 GAATGCAAAT
* *
30727759 TTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTACCCAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCCAAACTACCCAG
* * *
30727824 CCAAACTGCCTTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAAT
66 CCAAACTGCCTTG-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAT
* * * * ** * *
30727889 TTCGTACAAAATGTACTATCATGTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAA
130 TTGGAACAAAATGGACTATCATGCCAAACTACCCTGCCAAACTACCCTACCAAAATTTGATTGAA
* * *
30727954 TGCAAAGTTAAAAGGACATTTCTATTAGAATTTAAATTGGGACGAAATGGACTCTCATGCCAAAC
195 TGCAAAATTAAAAGGACATTTCTATTAGAATTTAAATTGGAACGAAATGGACTGTCATGCCAAAC
* *
30728019 TACT-CTACTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGG
260 TACTCCTACTAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAGTATTCAAATTGGG
* *
30728083 ACGAAATTGATTGTCAAGCCAAACTGCCT-TGCTAAAATTAATTAAATGATAAA
325 ACGAAATTGACTGTCAAGCCAAACTGCCTCTGCTAAAATTAATTGAATGATAAA
* * * *
30728136 TTAAGAGAAAATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCCAAACTACCCAG
* * * * * * *
30728201 CCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATTC-AT
66 CCAAACTGCCTTGC-AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAT
** * * *
30728265 ATTGGAATGAAATGGACTGTCATGCCAAACTA-CCTAGCCAAACTGCCCTGCCAAAATTTGATTG
130 -TTGGAACAAAATGGACTATCATGCCAAACTACCCT-GCCAAACTACCCTACCAAAATTTGATTG
* * * * * *
30728329 AATGCAAAATTAAGAGGACATTTCTATGAGTAA-TCAATTTGGAACGAAATGGATTGTCATGTCA
193 AATGCAAAATTAAAAGGACATTTCTATTAG-AATTTAAATTGGAACGAAATGGACTGTCATGCCA
* * * *
30728393 ATATTCTCTAGCAAACTGCCCTGCCAATATTT-ACTTCAATACAAAATTAAG-AGCACATTTCTA
257 A-A----CT-----ACT--CCTACTAAAATTTGA-TTTAATACAAAATTAAGAAG-ACATTTCTA
* * * ** * * *
30728456 TTAGTATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAA-TTACTCTGCCAAAATTTGATTTA
308 TAAGTATTCAAATTGGGAC-GAAATTGACTGTCAAGCCAAACTGCCTCTGCTAAAA-TTAATTGA
*
30728519 AT-ACAAAA
371 ATGA-TAAA
* * * *
30728527 TTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAATTGA-TAGTCAAGCCAAACT-----
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACT-GTCATGCCAAACTACCCA
*
30728586 G-C--TCTG-C-T--AAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTCAA
65 GCCAAACTGCCTTGCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * ** ** * *
30728642 ATT-GAGACGAAATGGACTATCTTGCCAAAATACCCAACCAAACTGTCCTGCCAAAATTTTATTG
129 TTTGGA-ACAAAATGGACTATCATGCCAAACTACCCTGCCAAACTACCCTACCAAAATTTGATTG
* * * * * * *
30728706 ACTGCAAATTTAAGAGGACATTTTTATAAGAATTTATATT-GAGATGAAATGGACTGTCATGCCA
193 AATGCAAAATTAAAAGGACATTTCTATTAGAATTTAAATTGGA-ACGAAATGGACTGTCATGCCA
* * * * ** * *
30728770 AACTAACAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TAT
257 AACT----A--C----T--CCTACTAAAATTTGATTTAATACAAAATTAAGAAGACA-TTTCTAT
* * * * * * *
30728833 AGGCATTCAAATTAGGATGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCGCTACCAAA
309 AAGTATTCAAATTGGGACGAAATTGACTGTCAAGCCAAACT-----GCC--TCT--GCT---AAA
*
30728898 ATGAATTGAATGCA-AAA
362 ATTAATTGAATG-ATAAA
* ** ** * * * *
30728915 ATAATTGGGTATTTCTATAAGCATTCAAATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAA
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCCAAACTACCCAG
* *
30728980 CCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCATTCAA
66 CCAAACTGCCTTG-CAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * ** * * * *
30729044 TTTGGCAA-GAAATGGATTGCCATGTCGAACTACCCTGCCAAACTACCC-AACAAATATTTGCTT
129 TTTGG-AACAAAATGGACTATCATGCCAAACTACCCTGCCAAACTACCCTACCAAA-ATTTGATT
* * *
30729107 GAGTGCAAAATTAAAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGTCATGCCA
192 GAATGCAAAATTAAAAGGACATTTCTATTAGAATTTAAATTGGAACGAAATGGACTGTCATGCCA
* * * *
30729172 AACTACT-TTGGC-AAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAAAT
257 AACTACTCCT-ACTAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAGTATTCAAAT
* * *
30729235 TTGGACGAAATTGAATGTCAAGCCAAACTGCC-CTGCTAAAATTGATTGAATGATAAA
321 TGGGACGAAATTGACTGTCAAGCCAAACTGCCTCTGCTAAAATTAATTGAATGATAAA
* * * * *
30729292 TTAAAAGGACATTTCTATAAGCATTCAATTTGGGACAAAATGGACGGTTATGCCAAACTACCCAG
1 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCCAAACTACCCAG
* * * * * *
30729357 CCAAACTATCC-TGCCAAAATTTGGTTAAATGCAAATTTAAGAGAACATTT-TTTAAGCATTCAA
66 CCAAACT-GCCTTG-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC-A
30729420 ATTTG
128 ATTTG
30729425 CTTGAAATAG
Statistics
Matches: 1022, Mismatches: 185, Indels: 164
0.75 0.13 0.12
Matches are distributed among these distances:
371 2 0.00
372 2 0.00
373 1 0.00
375 4 0.00
376 65 0.06
377 480 0.47
378 12 0.01
380 3 0.00
381 1 0.00
382 6 0.01
383 3 0.00
384 2 0.00
385 4 0.00
386 3 0.00
387 3 0.00
388 55 0.05
389 30 0.03
390 122 0.12
391 67 0.07
392 1 0.00
394 1 0.00
396 4 0.00
397 1 0.00
398 2 0.00
401 8 0.01
402 133 0.13
403 6 0.01
404 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (378 bp):
TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCCAAACTACCCAG
CCAAACTGCCTTGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATT
TGGAACAAAATGGACTATCATGCCAAACTACCCTGCCAAACTACCCTACCAAAATTTGATTGAAT
GCAAAATTAAAAGGACATTTCTATTAGAATTTAAATTGGAACGAAATGGACTGTCATGCCAAACT
ACTCCTACTAAAATTTGATTTAATACAAAATTAAGAAGACATTTCTATAAGTATTCAAATTGGGA
CGAAATTGACTGTCAAGCCAAACTGCCTCTGCTAAAATTAATTGAATGATAAA
Found at i:30728225 original size:478 final size:477
Alignment explanation
Indices: 30726745--30728975 Score: 2058
Period size: 478 Copynumber: 4.7 Consensus size: 477
30726735 GATAAAATAT
* * * * * * **
30726745 CTGTCATTCCAAACTACCCAGCCAAATTGCCCTACCAAAA-TTGATTGAAAGTAAAAATAAGAGG
1 CTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGG
* * * * *
30726809 ACATTTATATCAA-CATTCAAATTGCGACAAAATGGACTATCATGCAAAACTACCCTA-CCAAAC
66 ACATTTTTAT-AAGCATTCAAATTGAGACGAAATGGACTGTCATGCCAAACTACCC-AGCCAAAC
* * * * * * *
30726872 TGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTTTATAAGCATTCAATTTGAGA
129 TGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTGGGA
* * * * * * * * *
30726937 CGAAATGGATTGTTATGTCATACTGCCCTAACAAATTGCCCTGCCAATATTTTCTTGAATGCAAA
194 CGAAAT-GACTGTCATGTCAAACTACCCT-GCAAACTACCCTACCAATATTTGCTTGAATGCAAA
** * * * * *
30727002 A-TAAAGAAAACATTTCTATTA-ACATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATT
257 ATTAAA-AGGACATTTCTATTAGA-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACT
**
30727065 CCT-CCAAAATTTGATTGAATGA-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
320 -CTGCCAAAATTTGATTGAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * * * *
30727128 AAATGGACTT-T-AATGCCAAGCTACC-CTGCCAATATTTGGTTGAATGCA-AATTTAAAAGGAC
383 AAATGGA-TTGTCAA-GCCAAACTGCCTCTGCTAA-AATTGATTGAATG-ATAAATTAAAAGGAC
* * *
30727189 ATTTTTATAAGCATTCAAATTGGGACAAAATGGA
444 ATTTCTATAAGCATTCAAATTGAGACGAAATGGA
* * *
30727223 -TAGTCATGCAAAACTACCCAA-CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGA
1 CT-GTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGA
* * * * * * * *
30727286 GGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGTCAAACTAGCCTGCCAAAT
64 GGACATTTTTATAAGCATTCAAATTGAGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
* * * *
30727351 TGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAG-AGAACATTTCTATTAGCATTCAAATTGG
129 TGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAATTTGG
* * * * * * *
30727414 GACGAAATAGACTGTTATGCCAAATTA--CT-----CTA-CC-A--AAAATTTGATTTAATGAAA
192 GACGAAAT-GACTGTCATGTCAAACTACCCTGCAAACTACCCTACCAATATTTGCTTGAATGCAA
* * * * * * *
30727468 AATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATTGACTATCAAGCCAAACT-GTC
256 AATTAAAAGGACATTTCTATTAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC
* * *** * *
30727532 TTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAAATTGGGACGAA
321 -TGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * * *
30727596 AAGGACTGTCAAGTCAAACTACTCCTCCAAACTGCACTGCCAAAATTTTG-TTGAATGATAAATT
385 ATGGATTGTCAAGCCAAACT--GCCT-----CTG--CT---AAAA--TTGATTGAATGATAAATT
*
30727660 AAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGA
436 AAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAATGGA
* ** *
30727702 CTGTTATGCCAAACTACTC-AGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAG
1 CTGTCATGCCAAACTAC-CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAG
* * * *
30727766 GACATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTACCCAGCCAAACT
65 GACATTTTTATAAGCATTCAAATTGAGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* * * * *
30727831 GCCTTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAATTTCGTAC
130 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTGGGAC
* * ** *
30727896 AAAATGTACTATCATGTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAG
195 GAAATG-ACTGTCATGTCAAACTACCCTG-CAAACTACCCTACCAATATTTGCTTGAATGCAAAA
* * *
30727961 TTAAAAGGACATTTCTATTAGAATTTAAATTGGGACGAAATGGACTCTCATGCCAAACTACTCTA
258 TTAAAAGGACATTTCTATTAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTG
** * * * * *
30728026 CTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACGAAATT
323 CCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
30728091 GATTGTCAAGCCAAACTGCCT-TGCTAAAATTAATTAAATGATAAATTAAGAGAAAATTTCTATA
388 GATTGTCAAGCCAAACTGCCTCTGCTAAAATTGATTGAATGATAAATTAAAAGGACATTTCTATA
* *
30728155 AGCATTCAAATTGGGACGAAATTGA
453 AGCATTCAAATTGAGACGAAATGGA
* * *
30728180 CTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGG
1 CTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGG
* * * * *
30728245 AAATTTTTATAAGTATTCATATTG-GAATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACT
66 ACATTTTTATAAGCATTCAAATTGAG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* * * * *
30728309 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAAC
130 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTGGGAC
* * * * * * * *
30728374 GAAATGGATTGTCATGTCAATA-TTCTCTAGCAAACTGCCCTGCCAATATTTACTTCAATACAAA
195 GAAAT-GACTGTCATGTCAA-ACTACCCT-GCAAACTACCCTACCAATATTTGCTTGAATGCAAA
* * * *
30728438 ATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAATTACTC
257 ATTAAAAGGACATTTCTATTAGAATTCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTACTC
* * *
30728502 TGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAA
321 TGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * *
30728567 TTGATAGTCAAGCCAAACTG-CTCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTA
386 TGGATTGTCAAGCCAAACTGCCTCTGCTAAAATTGATTGAATGATAAATTAAAAGGACATTTCTA
30728631 TAAGCATTCAAATTGAGACGAAATGGA
451 TAAGCATTCAAATTGAGACGAAATGGA
* * * * * *
30728658 CTATCTTGCCAAAATACCCAA-CCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAG
1 CTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAG
* * * * * * *
30728722 GACATTTTTATAAGAATTTATATTGAGATGAAATGGACTGTCATGCCAAACTAACAAGCCAAATT
65 GACATTTTTATAAGCATTCAAATTGAGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
** * * * * *
30728787 GCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCATTCAAATTAGGA
130 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACA-TTTCTATAAGCATTCAATTTGGGA
* * * * * * *
30728850 TGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCGCTACCAA-A-ATGAATTGAATGCAA
194 CGAAAT-GACTGTCATGTCAAACTACCCTG-CAAACTACCCTACCAATATTTG-CTTGAATGCAA
* ** ** * * * * *
30728913 AAATAATTGGGTATTTCTATAAGCATTCAAATTGGGACAAAATGGGCTGTCATGCAAAACTAC
256 AATTAAAAGGACATTTCTATTAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
30728976 CCAACCAAAC
Statistics
Matches: 1430, Mismatches: 258, Indels: 132
0.79 0.14 0.07
Matches are distributed among these distances:
465 2 0.00
466 60 0.04
467 64 0.04
468 6 0.00
470 2 0.00
471 1 0.00
474 3 0.00
475 4 0.00
476 59 0.04
477 66 0.05
478 625 0.44
479 379 0.27
480 7 0.00
481 2 0.00
482 2 0.00
484 2 0.00
487 3 0.00
488 2 0.00
489 1 0.00
490 3 0.00
491 74 0.05
492 63 0.04
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (477 bp):
CTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGG
ACATTTTTATAAGCATTCAAATTGAGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTGGGACG
AAATGACTGTCATGTCAAACTACCCTGCAAACTACCCTACCAATATTTGCTTGAATGCAAAATTA
AAAGGACATTTCTATTAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCA
AAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAT
TGTCAAGCCAAACTGCCTCTGCTAAAATTGATTGAATGATAAATTAAAAGGACATTTCTATAAGC
ATTCAAATTGAGACGAAATGGA
Found at i:30728277 original size:101 final size:101
Alignment explanation
Indices: 30728097--30729177 Score: 839
Period size: 101 Copynumber: 11.0 Consensus size: 101
30728087 AATTGATTGT
* * * * * *
30728097 CAAGCCAAACTGCCTTGCTAAAA-TTAATTAAATG-ATAAATTAAGAGAAAATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCAT
* *
30728160 TCAAATTGGGACGAAATTGACTGTCATGCCAAACTAC
65 TCAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
30728197 CAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* *
30728262 CATATTGGAATGAAATGGACTGTCATGCCAAACTAC
66 CAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
* * * *
30728298 CTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * *
30728363 CAATTTGGAACGAAATGGATTGTCATGTCAATA-TTC
66 CAAATTGGAACGAAATGGACTGTCATGCCAA-ACTAC
* * * * * * *
30728399 TCTAG-CAAACTGCCCTGCCAATATTT-ACTTCAATACAAAATTAAGAGCACATTTCTATTAGTA
1 -CAAGCCAAACTGCCCTGCCAAAATTTGA-TTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
*
30728462 TTCAAATTGGGACGGAAA-GGACTGTCATGCCAAA-T--
64 TTCAAATTGGAAC-GAAATGGACTGTCATGCCAAACTAC
* * *
30728497 -------TACT---CTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * *
30728552 TAAAATGGGACGAAAT----TG--AT-----AGT--
66 CAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
* * **
30728575 CAAGCCAAACTGCTCTGCTAAAA-TTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
30728639 CAAATT-GAGACGAAATGGACTATCTTGCCAAAATACC
66 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTA-C
* * * * * *
30728676 CAA-CCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * *
30728740 TATATT-GAGATGAAATGGACTGTCATGCCAAACTAA
66 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTAC
* ** * * *
30728776 CAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCAT
* *
30728839 TCAAATTAGG-ATGAAATAGACTGTCATGCCAAACTAC
65 TCAAATT-GGAACGAAATGGACTGTCATGCCAAACTAC
* * * * ** **
30728876 CCAGCCAAACTGCGCTACCAAAA--TGAATTGAATGCAAAAATAATTGGGTATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* * * *
30728939 TCAAATTGGGACAAAATGGGCTGTCATGCAAAACTACC
65 TCAAATTGGAACGAAATGGACTGTCATGCCAAACTA-C
* * * *
30728977 CAA-CCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCAT
* * * * *
30729040 TCAATTTGGCAA-GAAATGGATTGCCATGTCGAACTAC
65 TCAAATTGG-AACGAAATGGACTGTCATGCCAAACTAC
** * ** * * * * *
30729077 CCTGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCAT
1 CAAGCCAAACTGCCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
*
30729141 TTAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
65 TCAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
30729178 TTTGGCAAAA
Statistics
Matches: 788, Mismatches: 141, Indels: 103
0.76 0.14 0.10
Matches are distributed among these distances:
77 1 0.00
78 1 0.00
82 2 0.00
84 2 0.00
85 3 0.00
86 1 0.00
87 52 0.07
88 61 0.08
89 1 0.00
91 4 0.01
93 1 0.00
98 4 0.01
99 14 0.02
100 177 0.22
101 449 0.57
102 15 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (101 bp):
CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
CAAATTGGAACGAAATGGACTGTCATGCCAAACTAC
Found at i:30728669 original size:87 final size:88
Alignment explanation
Indices: 30728404--30728670 Score: 292
Period size: 88 Copynumber: 3.0 Consensus size: 88
30728394 TATTCTCTAG
* * * * * * *
30728404 CAAACTGCCCTGCCAATATTT-ACTTCAATACAAAATTAAGAGCACATTTCTATTAGTATTCAAA
1 CAAACTACTCTGCCAAAATTTGA-TTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
30728468 TTGGGACGGAAA-GGACTGTCATGC
65 TTGGGAC-GAAATGGACTATCATGC
* * * *
30728492 CAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAA
1 CAAACTACTCTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
* *
30728557 TGGGACGAAATTGA-TAGTCAAGC
66 TGGGACGAAATGGACTA-TCATGC
* * *
30728580 CAAACTGCTCTGCTAAAA-TTGATTGAATGA-TAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 CAAACTACTCTGCCAAAATTTGATTGAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
30728643 TTGAGACGAAATGGACTATCTTGC
65 TTGGGACGAAATGGACTATCATGC
30728667 CAAA
1 CAAA
30728671 ATACCCAACC
Statistics
Matches: 150, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
87 65 0.43
88 84 0.56
89 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (88 bp):
CAAACTACTCTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
TGGGACGAAATGGACTATCATGC
Found at i:30728897 original size:100 final size:100
Alignment explanation
Indices: 30728577--30729568 Score: 653
Period size: 101 Copynumber: 10.1 Consensus size: 100
30728567 TTGATAGTCA
*
30728577 AGCCAAACTGCTCTGCTAAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTC
1 AGCCAAACTGC-CTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTC
* * *
30728640 AAATTGAGACGAAATGGACTATCTTGCCAAAATACCC
64 AAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
30728677 AACCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATTTA
1 AGCCAAACTG-CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
30728742 TATTGAGATGAAATGGACTGTCATGCCAAACTAACA
65 AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* ** * * *
30728778 AGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCATTC
1 AGCCAAACTG-CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCATTC
* *
30728841 AAATT-AGGATGAAATAGACTGTCATGCCAAACTACCC
64 AAATTGA-GACGAAATGGACTGTCATGCCAAACTACCC
* * ** **
30728878 AGCCAAACTGCGCTACCAAAA--TGAATTGAATGCAAAAATAATTGGGTATTTCTATAAGCATTC
1 AGCCAAACTGC-CTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
30728941 AAATTGGGACAAAATGGGCTGTCATGCAAAACTACCC
64 AAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * *
30728978 AACCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCATTC
1 AGCCAAACTGCC-TGCCAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
30729042 AATTTG-GCAAGAAATGGATTGCCATGTCGAACTACCC
64 AAATTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* * *** * * * * * *
30729079 TGCCAAACTACCCAACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCATTTA
1 AGCCAAACTGCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
30729144 AATTG-GAACGAAATGGACTGTCATGCCAAACT----
65 AATTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
30729176 ------ACT--TTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAA
1 AGCCAAACTGCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
30729233 ATTTG-GACGAAATTGAATGTCAAGCCAAACT----
66 A-TTGAGACGAAATGGACTGTCATGCCAAACTACCC
*
30729264 -GCC---CTG-CT---AAAA-TTGATTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCA
* * * * *
30729319 ATTTGGGACAAAATGGACGGTTATGCCAAACTACCC
65 AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
30729355 AGCCAAACTATCCTGCCAAAATTTGGTTAAATGCAAATTTAAGAGAACATTT-TTTAAGCATTCA
1 AGCCAAACT-GCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * * *
30729419 AATT-TG-CTTGAAATAGACTATTATACAAAACTACCA
65 AATTGAGAC--GAAATGGACTGTCATGCCAAACTACCC
* * * * * * * *
30729455 AGCTAAATTGCCTTGCCAAAA-TTGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTCA
1 AGCCAAACTGCC-TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * **
30729519 AATTGCGACAAAATCGACTGTCATGGAAAACTACCC
65 AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* *
30729555 AACCAGACTGCCTG
1 AGCCAAACTGCCTG
30729569 TAACACCCCG
Statistics
Matches: 698, Mismatches: 149, Indels: 91
0.74 0.16 0.10
Matches are distributed among these distances:
86 4 0.01
87 57 0.08
88 65 0.09
89 8 0.01
90 2 0.00
91 4 0.01
92 3 0.00
95 2 0.00
97 2 0.00
98 3 0.00
99 44 0.06
100 248 0.36
101 250 0.36
102 6 0.01
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (100 bp):
AGCCAAACTGCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGAGACGAAATGGACTGTCATGCCAAACTACCC
Found at i:30729235 original size:88 final size:85
Alignment explanation
Indices: 30729112--30729354 Score: 263
Period size: 87 Copynumber: 2.8 Consensus size: 85
30729102 TGCTTGAGTG
* *
30729112 CAAAATTAAAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGTCATGCCAAACTA
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGG-ACGAAATGGACTGTCATGCCAAACTA
** *
30729177 CTTTGGC-AAAATTTGATTTAATT
65 CCCT-GCTAAAA-TTGATTGAA-T
* * * * * *
30729200 CAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATTGAATGTCAAGCCAAACTG
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAA-TTGGACGAAATGGACTGTCATGCCAAACTA
30729265 CCCTGCTAAAATTGATTGAAT
65 CCCTGCTAAAATTGATTGAAT
* * * * * *
30729286 GATAAATTAAAAGGACATTTCTATAAGCATTCAATTTGGGACAAAATGGACGGTTATGCCAAACT
1 CA-AAATTAAAACGACATTTCTATAAGCATTCAAATT-GGACGAAATGGACTGTCATGCCAAACT
30729351 ACCC
64 ACCC
30729355 AGCCAAACTA
Statistics
Matches: 128, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
86 4 0.03
87 62 0.48
88 58 0.45
89 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (85 bp):
CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGGACGAAATGGACTGTCATGCCAAACTAC
CCTGCTAAAATTGATTGAAT
Found at i:30729318 original size:87 final size:89
Alignment explanation
Indices: 30729080--30729354 Score: 258
Period size: 88 Copynumber: 3.1 Consensus size: 89
30729070 GAACTACCCT
** * * * * *
30729080 GCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCATTTA
1 GCCAAACTACCCTGGCAAA-ATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCA
* *
30729144 AA-TTGGAACGAAATGGACTGTCAT
65 AATTTGGAACGAAATGGAATGTCAA
** * * *
30729168 GCCAAACTACTTTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAA
1 GCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCAA
*
30729233 ATTTGG-ACGAAATTGAATGTCAA
66 ATTTGGAACGAAATGGAATGTCAA
* * *
30729256 GCCAAACTGCCCT-GCTAAAA-TTGATTGAA-TGATAAATTAAAAGGACATTTCTATAAGCATTC
1 GCCAAACTACCCTGGC-AAAATTTGATTGAATTCA-AAATTAAAACGACATTTCTATAAGCATTC
* * ** * *
30729318 -AATTTGGGACAAAATGGACGGTTAT
64 AAATTTGGAACGAAATGGAATGTCAA
30729343 GCCAAACTACCC
1 GCCAAACTACCC
30729355 AGCCAAACTA
Statistics
Matches: 152, Mismatches: 30, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
86 9 0.06
87 58 0.38
88 77 0.51
89 8 0.05
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (89 bp):
GCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCAA
ATTTGGAACGAAATGGAATGTCAA
Found at i:30731174 original size:29 final size:29
Alignment explanation
Indices: 30731140--30731213 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
30731130 TCATCAACCA
*
30731140 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
30731169 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
30731198 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
30731214 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:30739245 original size:29 final size:29
Alignment explanation
Indices: 30739211--30739284 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
30739201 TCATTAACCA
*
30739211 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
* **
30739240 CGCACACTTACTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
30739269 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
30739285 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:30741206 original size:87 final size:87
Alignment explanation
Indices: 30741054--30741219 Score: 194
Period size: 87 Copynumber: 1.9 Consensus size: 87
30741044 TATTTTCTTA
* * * *
30741054 AATGTAAAATTCAGAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACACCAA
1 AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
* *
30741119 ACTACTCTGCCAAATTTGATTG
66 ACTACCCAGCCAAATTTGATTG
* * **
30741141 AATGAAAAATTAAGAGAACATTTCTA-T-ACGTATTAAAATTAGG-ATGAAATGGACTGTAATGC
1 AATGAAAAATTAAGAGAACATTTCTATTAAC--ATTAAAATT-GGAACGAAATGGACTATAACAC
30741203 CAAACTACCCAGCCAAA
63 CAAACTACCCAGCCAAA
30741220 CCCCCCTGCC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
85 2 0.03
86 1 0.02
87 61 0.92
88 2 0.03
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.27
Consensus pattern (87 bp):
AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
ACTACCCAGCCAAATTTGATTG
Found at i:30741306 original size:101 final size:100
Alignment explanation
Indices: 30741125--30741309 Score: 237
Period size: 101 Copynumber: 1.8 Consensus size: 100
30741115 CCAAACTACT
* * * * *
30741125 CTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTAGGATGAAA
1 CTGCCAAATTAGATTGAATGAAAAATTAAAAGAACATTTCTATAAGCATTAAAATTAGGAGGAAA
*
30741190 TGGACTGTAATGCCAAACTACCCAGCCAAACCCCC
66 TGGACTGTAAGGCCAAACTACCCAGCCAAACCCCC
* * *
30741225 CTGCCAAAATTAGATTGAATGCAAAATTAATAAG-ACATTTCTATAAGCATTCAAATTAGGAGGG
1 CTGCC-AAATTAGATTGAATGAAAAATTAA-AAGAACATTTCTATAAGCATTAAAATTAGGAGGA
* * *
30741289 AATTGATTGTCAGGCCAAACT
64 AATGGACTGTAAGGCCAAACT
30741310 GCCTTGCTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
100 5 0.07
101 64 0.90
102 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (100 bp):
CTGCCAAATTAGATTGAATGAAAAATTAAAAGAACATTTCTATAAGCATTAAAATTAGGAGGAAA
TGGACTGTAAGGCCAAACTACCCAGCCAAACCCCC
Found at i:30741393 original size:87 final size:87
Alignment explanation
Indices: 30741238--30741396 Score: 219
Period size: 87 Copynumber: 1.8 Consensus size: 87
30741228 CCAAAATTAG
* * * * * *
30741238 ATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAAATTAGGAGGGAATTGATTGTCAGG
1 ATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTATCAGG
30741303 CCAAACTGCCTTGCTAAAATTC
66 CCAAACTGCCTTGCTAAAATTC
* * * **
30741325 ATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTG
1 ATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTATCAGG
30741390 CCAAACT
66 CCAAACT
30741397 ACTCATCCAA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (87 bp):
ATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTATCAGG
CCAAACTGCCTTGCTAAAATTC
Found at i:30741477 original size:101 final size:100
Alignment explanation
Indices: 30741303--30741745 Score: 385
Period size: 101 Copynumber: 4.4 Consensus size: 100
30741293 GATTGTCAGG
* * * * * *
30741303 CCAAACTGCCTTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
30741367 TTGGGACGAAATGGACTATCTTGCCAAACTACTCAT
66 TTGGGACGAAATGGACTATCTTGCCAAACTAC-CAT
* * * * ** **
30741403 CCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* *
30741468 TTGGGACGAAATGAACTGTCATT-CCAAACTACC-T
66 TTGGGACGAAATGGACTATC-TTGCCAAACTACCAT
* * * * *
30741502 AGCAAAC-AGCCCTGCCAAAA-TTGATTGAAAGCAAAAATAAGAGGACGTTTATATAAGCATTCA
1 -CCAAACTA-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCA
* * * ** *
30741565 AATTGCGACAAAATGG-CATATCATGGAAAACTACCTAA
64 AATTGGGACGAAATGGAC-TATCTTGCCAAACTACC-AT
* * * * *
30741603 CCAAACTACTCTGCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTTATAAGCATTCAAT
1 CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* ** * * * *
30741668 TTGGGACGAAATGGATTGCCATGACAAACTGCCCT
66 TTGGGACGAAATGGACTATCTTGCCAAACTACCAT
* * ** *
30741703 GCCAAACTACCCAGCCAATATTTGCCTGAATGCAAAATAAAGA
1 -CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGA
30741746 AAAAATGTCT
Statistics
Matches: 268, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
98 2 0.01
99 58 0.22
100 46 0.17
101 160 0.60
102 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (100 bp):
CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
TTGGGACGAAATGGACTATCTTGCCAAACTACCAT
Found at i:30741497 original size:188 final size:187
Alignment explanation
Indices: 30741071--30741499 Score: 441
Period size: 188 Copynumber: 2.3 Consensus size: 187
30741061 AATTCAGAGA
* * *
30741071 ACATTTCTATTAA-CATTCAAATTGGAACGAAATGGACTATCACACCAAACTACTCTGCCAAATT
1 ACATTTCTA-TAAGCATTCAAATTGGGACGAAAT-GACTGTCACACCAAACTACTCTGCCAAAAT
* * * * *
30741135 TGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTAGGATGAAATGGACTGTAA
64 TCATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTAAAATTAGGACGAAATGGACTATAA
*
30741200 TGCCAAACTACCCAGCCAAACCCCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAG
129 TGCCAAACTACCCAGCCAAACCCCCCTACCAAAATTAGATTGAATGCAAAATTAATAAG
* * * * ** * *
30741259 ACATTTCTATAAGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGC-CTTGCTAAAAT
1 ACATTTCTATAAGCATTCAAATTGGGA-CGAAATGACTGTCACACCAAACTACTC-TGCCAAAAT
* * * * * **
30741323 TCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCT
64 TCATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTAAAATTAGGACGAAATGGACTATAA
* * ** * * ** *
30741388 TGCCAAACTACTCATCCAAACTTCCCTACCAAAATTTGGTTGAATGC-AAATTTTTGAGG
129 TGCCAAACTACCCAGCCAAACCCCCCTACCAAAATTAGATTGAATGCAAAATTAAT-AAG
* ** **
30741447 ACATTTTTATAATTATTCAAATTGGGACGAAATGAACTGTCATTCCAAACTAC
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATG-ACTGTCACACCAAACTAC
30741500 CTAGCAAACA
Statistics
Matches: 193, Mismatches: 43, Indels: 10
0.78 0.17 0.04
Matches are distributed among these distances:
187 15 0.08
188 174 0.90
189 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (187 bp):
ACATTTCTATAAGCATTCAAATTGGGACGAAATGACTGTCACACCAAACTACTCTGCCAAAATTC
ATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTAAAATTAGGACGAAATGGACTATAATG
CCAAACTACCCAGCCAAACCCCCCTACCAAAATTAGATTGAATGCAAAATTAATAAG
Found at i:30742003 original size:100 final size:100
Alignment explanation
Indices: 30741865--30742134 Score: 301
Period size: 101 Copynumber: 2.7 Consensus size: 100
30741855 TTGTCTGTTA
* * * * *
30741865 AGCCAAACTGCCCTGCTAAAAGTGATTGAATGATAAATTAAGAGGACGTTTATATAAGAATTCAA
1 AGCCAAACTGCCATGCCAAAATTGATTGAATGAAAAATTAAGAGGACATTTATATAAGAATTCAA
* * ** *
30741930 ATTGGGATGAAATGGGTTGCAATGACAAACTACCC
66 ATTGAGACGAAATGGACTACAATGACAAACTACCC
* * * * *
30741965 AGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCATGCCAAAA-TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGAATTCA
** **
30742030 AATTGAGACGAAATGGACTATTATTCCAAACTACCC
65 AATTGAGACGAAATGGACTACAATGACAAACTACCC
** *
30742066 AGCCAAACTGCTTTGCCAAAATTGATTGAAAGTAAAAA-TAAGAGGACATTTATATAA-ATATTC
1 AGCCAAACTGCCATGCCAAAATTGATTGAATG-AAAAATTAAGAGGACATTTATATAAGA-ATTC
30742129 AAATTG
64 AAATTG
30742135 TAACAAAATA
Statistics
Matches: 140, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
100 56 0.40
101 84 0.60
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (100 bp):
AGCCAAACTGCCATGCCAAAATTGATTGAATGAAAAATTAAGAGGACATTTATATAAGAATTCAA
ATTGAGACGAAATGGACTACAATGACAAACTACCC
Found at i:30742161 original size:100 final size:101
Alignment explanation
Indices: 30741956--30742161 Score: 245
Period size: 100 Copynumber: 2.0 Consensus size: 101
30741946 TTGCAATGAC
* * ** *
30741956 AAACTACCCAGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTAT
1 AAACTACCCAGCCAAACTGCCATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTATAT
* * * * * *
30742021 AAGCATTCAAATTGAGACGAAATGGACTATTATTCC
66 AAACATTCAAATTGAGACAAAATAGACTATCATGCA
** *
30742057 AAACTACCCAGCCAAACTGCTTTGCCAAAA-TTGATTGAAAGTAAAAATAAGAGGACATTTATAT
1 AAACTACCCAGCCAAACTGCCATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTATAT
* *
30742121 AAATATTCAAATTGTA-ACAAAATAGACTGTCATGCA
66 AAACATTCAAATTG-AGACAAAATAGACTATCATGCA
30742157 AAACT
1 AAACT
30742162 GCGCTGCTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
100 59 0.67
101 29 0.33
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (101 bp):
AAACTACCCAGCCAAACTGCCATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTATAT
AAACATTCAAATTGAGACAAAATAGACTATCATGCA
Found at i:30742265 original size:88 final size:87
Alignment explanation
Indices: 30742067--30742425 Score: 337
Period size: 88 Copynumber: 4.1 Consensus size: 87
30742057 AAACTACCCA
* * * * * **
30742067 GCCAAACTGCTTTGCCAAAATTGATTGAAAGTAAAAATAAGAGGACATTTATATAAATATTCAAA
1 GCCAAACTACTTTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * *
30742132 TTGTAACAAAATAGACTGTCAT
66 TTGGAACGAAATGGACTGTCAT
* * ** * * ** * *
30742154 GCAAAACTGCGCTGCTAATATTTGCGTGAGA-GCAAAATTAAGAGGACATTTTTACT-AGCATTT
1 GCCAAACTACTTTGCCAA-AATTGATTGA-ATGCAAAATTAAGAGGACATTTCTA-TAAGCATTC
30742217 AAATTGGAACGAAATGGACTGTCAT
63 AAATTGGAACGAAATGGACTGTCAT
* * * *
30742242 GCCAAACTACTTTGCCAAAATTTGATTCAATGCACAATTAATAGGACAATTCTATAAGCATTCAA
1 GCCAAACTACTTTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * ** *
30742307 ATTGGGATGAAATTAACTGTCAA
65 ATTGGAACGAAATGGACTGTCAT
* *** *
30742330 GCCAAACTACCTTAATAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCAATCAA
1 GCCAAACTACTTTGCCAAAATTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCAA
*
30742394 ATTGGGACGAAATGGACTGTCAT
65 ATTGGAACGAAATGGACTGTCAT
30742417 GCCAAACTA
1 GCCAAACTA
30742426 ACCAGCTAAA
Statistics
Matches: 217, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
86 1 0.00
87 82 0.38
88 132 0.61
89 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (87 bp):
GCCAAACTACTTTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGAACGAAATGGACTGTCAT
Found at i:30742267 original size:464 final size:466
Alignment explanation
Indices: 30741790--30743211 Score: 1423
Period size: 464 Copynumber: 3.0 Consensus size: 466
30741780 TAAACTGTCA
* *
30741790 TGCCAAAATTTGATTTAATGCAAATTTATAAGGACATTTATATAAGCATTCAAATTGGGATGAAA
1 TGCCAAAATTTGATTCAATGCAAATTTATAAGGACATTTCTATAAGCATTCAAATTGGGATGAAA
* * * *
30741855 TTGTCTGTTAAGCCAAACTGCCCTGCTAAAAGTGATTGAATGATAAATTAAGAGGACGTTTATAT
66 TTGACTGTTAAGCCAAACTACCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTATAT
* ** *
30741920 AAGAATTCAAATTGGGATGAAATGGGTTGCAATGACAAACTACCCAGCCAAACTGCCATGCCAAA
131 AAGAATTCAAATTGGGACGAAATGGACTGCAATGACAAACTACCCAGCCAAACTGCCCTGCCAAA
*
30741985 ATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGAGACGAAATGGACTA
196 ATTTGGTT-AATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTA
* * ** *
30742050 TTATTCCAAACTACCCAGCCAAACTGCTTTGCCAAAATTGATTGAAAGTAAAAATAAGAGGACAT
260 TAATTCAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAAAGCAAAAAT-AGAGGACAT
* * *
30742115 TTATATAAATATTCAAATTGTAACAAAATAGACTGTCATGCAAAACT-GC-G-C-TGCTAATATT
324 TTATATAAATATTCAAATTGTAACAAAATAGACTGTCATGCAAAACTAACTGCCTTGCCAAAATT
* * * **
30742176 TGCGTGAGA-GCAAAATTAAGAGGACATTTTTACT-AGCATTTAAATTGGAACGAAATGGACTGT
389 TG-ATGAAATGCAAAATTAAGAGGACATTTCTA-TAAGCATACAAATTGGAACGAAATGGACTGT
**
30742239 CATGCCAAACTACTT
452 CATGCCAAACTACCC
* *
30742254 TGCCAAAATTTGATTCAATGCACAATTAAT-AGGACAATTCTATAAGCATTCAAATTGGGATGAA
1 TGCCAAAATTTGATTCAATGCA-AATTTATAAGGACATTTCTATAAGCATTCAAATTGGGATGAA
* * * ** *
30742318 ATTAACTGTCAAGCCAAACTACCTTAATAAAATTGATTGAATGATAAATTAAGAGGACATTTCTA
65 ATTGACTGTTAAGCCAAACTACCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTATA
* * * *
30742383 TAAGCAA-TCAAATTGGGACGAAATGGACTGTC-ATGCCAAACTAACCAGCTAAACTGCCCTGCT
130 TAAG-AATTCAAATTGGGACGAAATGGACTG-CAATGACAAACTACCCAGCCAAACTGCCCTGCC
* *
30742446 AAAATTTTGTTCAATGCAAATTTAAGAGGACACTTTTATAAGCATTCAAATTGGGACGAAATGGA
193 AAAATTTGGTT-AATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGA
* ** * * * * * **
30742511 CTGTCAA-TCTGATCTATCCAGCCAAACTGCCCTGCCAATATTAATCAAAAGCAAAAATA-A-GA
257 CTAT-AATTCAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAAAGCAAAAATAGAGGA
**
30742573 CATTTATATAAGGATTCAAATTGTGAA-AAAATAGACTGTCATGCAAAACTACCCAACCAAACTG
321 CATTTATATAAATATTCAAATTGT-AACAAAATAGACTGTCATGCAAAACT---------AACTG
* * * * *
30742637 CCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAATTTGGGATG
376 CCTTGCCAAAATTTGATGAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATTGGAACG
* * *
30742702 AAATGGATTGTCATGTCAACCTACCC
441 AAATGGACTGTCATGCCAAACTACCC
* ** * * * * *
30742728 TGCCAAGATTTTCTTGAATGCAAA-ATA-AAGAGAACATTTCTATTAGCATTCAAATTGGAACGA
1 TGCCAAAATTTGATTCAATGCAAATTTATAAG-G-ACATTTCTATAAGCATTCAAATTGGGATGA
* * * * *
30742791 AATGGACT-TTCATGCCAAACTACCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTT
64 AATTGACTGTT-AAGCCAAACTACCCTGCTAA-AATTGATTGAATGATAAATTAAGAGGACATTT
* * * * * *
30742855 TTGTAAGCATTCAGATTGGGACGAAATGGACTGTAATGGA-AAACTACCCAGCCAAACCGCCCTG
127 ATATAAGAATTCAAATTGGGACGAAATGGACTGCAAT-GACAAACTACCCAGCCAAACTGCCCTG
* * * *
30742919 CCAAAATATGAATTAATGC-ACTTTAAGAGAACATTTTTATAAGCATTCAAATTGGGACGAAATG
191 CCAAAATTTG-GTTAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATG
** *
30742983 GACTATAATGAAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAATGCAAAAATAGAAG
255 GACTATAATTCAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAAAGCAAAAATAG-AG
* * * *
30743048 AATATTTATATAAGCT-TTCAAATTG-AGACAAAAT-GAGTTGTCATGCAAAACTACCCAACCAA
319 GACATTTATATAA-ATATTCAAATTGTA-ACAAAATAGA-CTGTCATGCAAAACT---------A
* ** * * * *
30743110 ACTGCCCTATCAAAATTTGATTG-AATGTAAAATTATGAGGACATTTCTATAAGCATTCAATTTG
372 ACTGCCTTGCCAAAATTTGA-TGAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATT-
* * *
30743174 GGAA-GAAATGGACTATCATGTCAAACTACCT
435 GGAACGAAATGGACTGTCATGCCAAACTACCC
30743205 TGCCAAA
1 TGCCAAA
30743212 CTTCCCTGCC
Statistics
Matches: 793, Mismatches: 126, Indels: 65
0.81 0.13 0.07
Matches are distributed among these distances:
461 47 0.06
462 3 0.00
463 1 0.00
464 262 0.33
465 10 0.01
471 1 0.00
472 4 0.01
473 11 0.01
474 218 0.27
475 93 0.12
476 7 0.01
477 132 0.17
478 4 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (466 bp):
TGCCAAAATTTGATTCAATGCAAATTTATAAGGACATTTCTATAAGCATTCAAATTGGGATGAAA
TTGACTGTTAAGCCAAACTACCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTATAT
AAGAATTCAAATTGGGACGAAATGGACTGCAATGACAAACTACCCAGCCAAACTGCCCTGCCAAA
ATTTGGTTAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTAT
AATTCAAAACTACCCAGCCAAACTGCCATGCCAAAATTGATTGAAAGCAAAAATAGAGGACATTT
ATATAAATATTCAAATTGTAACAAAATAGACTGTCATGCAAAACTAACTGCCTTGCCAAAATTTG
ATGAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATTGGAACGAAATGGACTGTCATG
CCAAACTACCC
Found at i:30742395 original size:87 final size:88
Alignment explanation
Indices: 30742185--30742425 Score: 299
Period size: 87 Copynumber: 2.8 Consensus size: 88
30742175 TTGCGTGAGA
* * *
30742185 GCAAAATTAAGAGGACATTTTTACT-AGCATTTAAATTGGAACGAAATGGACTGTCATGCCAAAC
1 GCAAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
* **
30742249 TACTTTGCCAAAATTTGATTCAAT
65 TACCTTAACAAAATTTGATTCAAT
* * * * ** *
30742273 GCACAATTAATAGGACAATTCTATAAGCATTCAAATTGGGATGAAATTAACTGTCAAGCCAAACT
1 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
* *
30742338 ACCTTAATAAAA-TTGATTGAAT
66 ACCTTAACAAAATTTGATTCAAT
*
30742360 G-ATAAATTAAGAGGACATTTCTATAAGCAATCAAATTGGGACGAAATGGACTGTCATGCCAAAC
1 GCA-AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
30742424 TA
65 TA
30742426 ACCAGCTAAA
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
86 1 0.01
87 66 0.52
88 61 0.48
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (88 bp):
GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
ACCTTAACAAAATTTGATTCAAT
Found at i:30742726 original size:101 final size:101
Alignment explanation
Indices: 30742346--30742733 Score: 348
Period size: 101 Copynumber: 3.9 Consensus size: 101
30742336 CTACCTTAAT
*
30742346 AAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCA-ATCAAATTGGGACGAAATGG
1 AAAATTGATTAAATGCA-AAATTAAGAGGACATTTCTATAAGCATA-CAAATTGGGACGAAATGG
* * * *
30742409 ACTGTCATG-CCAAACTAACCAGCTAAACTGCCCTGCT
64 ACTGTCATGTCAAAACTACCCAGCCAAACTGCCCTGCC
* * *
30742446 AAAATTTTG-TTCAATGCAAATTTAAGAGGACACTTT-TATAAGCATTCAAATTGGGACGAAATG
1 AAAA--TTGATTAAATGCAAAATTAAGAGGACA-TTTCTATAAGCATACAAATTGGGACGAAATG
* ** * *
30742509 GACTGTCA-ATCTGATCTATCCAGCCAAACTGCCCTGCC
63 GACTGTCATGTCAAAACTACCCAGCCAAACTGCCCTGCC
* * * * * * * * * ** *
30742547 AATATTAATCAAAAGCAAAAAT-A-A-GACATTTATATAAGGATTCAAATTGTGAAAAAATAGAC
1 AAAATTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATTGGGACGAAATGGAC
* *
30742609 TGTCATG-CAAAACTACCCAACCAAACTGCCTTGCC
66 TGTCATGTCAAAACTACCCAGCCAAACTGCCCTGCC
* * *
30742644 AAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAATTTGGGATGAAATGGA
1 AAAA-TTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATTGGGACGAAATGGA
* * *
30742709 TTGTCATGTC-AACCTACCCTGCCAA
65 CTGTCATGTCAAAACTACCCAGCCAA
30742734 GATTTTCTTG
Statistics
Matches: 227, Mismatches: 47, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
96 3 0.01
97 59 0.26
98 14 0.06
99 4 0.02
100 14 0.06
101 125 0.55
102 8 0.04
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
AAAATTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATACAAATTGGGACGAAATGGAC
TGTCATGTCAAAACTACCCAGCCAAACTGCCCTGCC
Found at i:30742793 original size:88 final size:88
Alignment explanation
Indices: 30742629--30742909 Score: 312
Period size: 88 Copynumber: 3.2 Consensus size: 88
30742619 AACTACCCAA
* * * * * * *
30742629 CCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAAT
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
30742694 TTGGGATGAAATGGA-TTGTCATG
66 TTGGGACGAAATGGACTT-TCATG
* * ** * * * *
30742717 TCAACCTACCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTATTAGCATTCAAA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
30742782 TTGGAACGAAATGGACTTTCATG
66 TTGGGACGAAATGGACTTTCATG
* * * *
30742805 CCAAACTACCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
30742870 TTGGGACGAAATGGACTGTAATG
66 TTGGGACGAAATGGACTTTCATG
** *
30742893 GAAAACTACCCAGCCAA
1 CCAAACTACCCTGCCAA
30742910 ACCGCCCTGC
Statistics
Matches: 158, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
88 156 0.99
89 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (88 bp):
CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTTTCATG
Found at i:30742978 original size:100 final size:98
Alignment explanation
Indices: 30742804--30743290 Score: 388
Period size: 100 Copynumber: 4.8 Consensus size: 98
30742794 GGACTTTCAT
* * * * * *
30742804 GCCAAACTACCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* *
30742869 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* *
30742905 GCCAAACCGCCCTGCCAAAATATGAATT-AATGCACTTTAAGAGAACATTTTTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAAT-TG-ATTGAATGCA-ATTAAGAGAACATTTTTATAAGCATTCAA
30742969 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* ** * * *
30743005 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAAATAGAAGAATATTTATATAAGCTTTCAAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTA-AG-AGAACATTTTTATAAGCATTCAAA
* * * * * *
30743070 TTGAGACAAAAT-GAGTTGTCATGCAAAACTACCCA
64 TTGGGACGAAATGGA-CTATAATGAAAAACTACCCA
* ** * * * *
30743105 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAA-TTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* * * ** **
30743170 TTTGGGAAGAAATGGACTATCATGTCAAACTACCTT
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* * * * * * *
30743206 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGAC-TTTTCCATTAA-CATTT
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATGC--AATTAAGAGAACATTTT-TA-TAAGCATTC
* *
30743269 AAATTGGAACGAAATAGACTAT
61 AAATTGGGACGAAATGGACTAT
30743291 CATGCCAAAC
Statistics
Matches: 308, Mismatches: 62, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
98 4 0.01
99 13 0.04
100 146 0.47
101 132 0.43
102 10 0.03
103 3 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (98 bp):
GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTAAGAGAACATTTTTATAAGCATTCAAATT
GGGACGAAATGGACTATAATGAAAAACTACCCA
Found at i:30743193 original size:101 final size:101
Alignment explanation
Indices: 30742804--30743370 Score: 476
Period size: 101 Copynumber: 5.8 Consensus size: 101
30742794 GGACTTTCAT
* * * * * *
30742804 GCCAAACTACCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
30742869 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
66 ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * ** * *
30742905 GCCAAACCGCCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
30742968 AATTGGGACGAAATGGACTATAATGAAAAACTACCCA
65 AATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * * * * *
30743005 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA
* * *
30743068 AATTGAGACA-AAAT-GAGTTGTCATGCAAAACTACCCA
65 AATTGGGA-AGAAATGGA-CTATCATGCAAAACTACCCA
* ** * *
30743105 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* **
30743170 TTTGGGAAGAAATGGACTATCATGTC-AAACTACCTT
66 ATTGGGAAGAAATGGACTATCATG-CAAAACTACCCA
* * * * * * *
30743206 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
* *
30743270 AATT-GGAACGAAATAGACTATCATGCCAAACT-----
65 AATTGGGAA-GAAATGGACTATCATGCAAAACTACCCA
* * *
30743302 -----ACT---CTGGCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
30743359 ATTGGGATGAAA
66 ATTGGGAAGAAA
30743371 CTGACTGACA
Statistics
Matches: 382, Mismatches: 68, Indels: 45
0.77 0.14 0.09
Matches are distributed among these distances:
87 3 0.01
88 48 0.13
89 3 0.01
91 3 0.01
98 3 0.01
99 11 0.03
100 148 0.39
101 153 0.40
102 10 0.03
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
Found at i:30743362 original size:88 final size:86
Alignment explanation
Indices: 30743231--30743480 Score: 222
Period size: 87 Copynumber: 2.9 Consensus size: 86
30743221 CAATATTTGC
* * * * * *
30743231 TTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTAAATTGGAACGAAATAGACTATCATG
1 TTGAATGCAAAATTAAGAAGACATTTCTA-TAAGCATTCAAATTGGGACGAAAT-GACTATCATG
*
30743295 CCAAACTACTCTGGC-AAAATTTGA
64 CCAAACCAC-CTGGCTAAAA-TTGA
* * *
30743319 TTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGATGAAACTGACTGA-CAAG
1 TTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAA-TGACT-ATCATG
*
30743383 CCAAACCACCTTGCTAAAATTGA
64 CCAAACCACCTGGCTAAAATTGA
* * * * * *
30743406 TTGATTG-ATAAATTAAGATA-ACATTTTTACAAGCATTCAAATTGGGACAAAATGGACTGTAAT
1 TTGAATGCA-AAATTAAGA-AGACATTTCTATAAGCATTCAAATTGGGACGAAAT-GACTATCAT
*
30743469 GCCAAACAACCT
63 GCCAAACCACCT
30743481 AGTCTAATTG
Statistics
Matches: 133, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
86 2 0.02
87 69 0.52
88 60 0.45
89 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.28
Consensus pattern (86 bp):
TTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGACTATCATGCC
AAACCACCTGGCTAAAATTGA
Found at i:30743664 original size:88 final size:82
Alignment explanation
Indices: 30743526--30743752 Score: 249
Period size: 82 Copynumber: 2.7 Consensus size: 82
30743516 AAATTAAAAA
* * * * *
30743526 AGGACATTTTTATTAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACTCTGGCAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTAC-CTGGCAAA
30743591 ATTTGATTTAATGCA-AAATTAAG
65 A-TTG----AATG-ATAAATTAAG
** * * * * * *
30743614 AGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAAGCCAAACTGCCTTGCTAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
30743679 TTGAATGATAAATTAAG
66 TTGAATGATAAATTAAG
* *
30743696 AGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGCTGTCATGCCAAACTACC
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACC
30743753 AAGCCAAACA
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
81 1 0.01
82 62 0.53
86 3 0.03
87 7 0.06
88 45 0.38
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (82 bp):
AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
TTGAATGATAAATTAAG
Found at i:30744069 original size:188 final size:186
Alignment explanation
Indices: 30743587--30744099 Score: 518
Period size: 188 Copynumber: 2.7 Consensus size: 186
30743577 ACTACTCTGG
* * * *
30743587 CAAAATTTGATTTAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * * * * * *
30743652 -TCTGTCAAGCCAAACTGCCTTGCTAAATTGAAT-GAT--AAATTAAGAGGACATTTCTACAAGC
66 AT-TGTCATGTCAAACTGCCCTGCCAAATTGATTGGATGAAAAATAAGAGGACATTTCTATAAGC
* ** ** * *
30743713 ATTCAAATTGGGATGAAATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGC
130 ATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * * *
30743770 CAAAATTTTG-TTCAATACG-AATTTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAAT
1 CAAAA-TTTGATTAAAT-GGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAAT
* * * * ** * * * *
30743833 GGACTGTC-TTTCCAAATTACCCAACCAAACTTGATAGAAAGAAAAAATAAGAGGACATTTATAT
64 GGATTGTCATGT-CAAACTGCCCTGCCAAA-TTGATTGGATG-AAAAATAAGAGGACATTTCTAT
* * *
30743897 AAGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTGCCAAACCAAACTGCCTTGC
126 AAGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * *
30743958 CGAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTAGGACTAAATGG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * *
30744023 ATTGTCATGTCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTA
66 ATTGTCATGTCAAACTGCCCTGCCAA-A-TTGATTGGATGAAAAAT-AAGAGGACATTTCTATAA
*
30744088 GCATTAAAATTG
128 GCATTCAAATTG
30744100 GAACGAAATA
Statistics
Matches: 260, Mismatches: 56, Indels: 22
0.77 0.17 0.07
Matches are distributed among these distances:
183 67 0.26
184 8 0.03
185 1 0.00
187 5 0.02
188 143 0.55
189 36 0.14
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (186 bp):
CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
ATTGTCATGTCAAACTGCCCTGCCAAATTGATTGGATGAAAAATAAGAGGACATTTCTATAAGCA
TTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
Found at i:30744119 original size:88 final size:87
Alignment explanation
Indices: 30743944--30744214 Score: 287
Period size: 88 Copynumber: 3.1 Consensus size: 87
30743934 AACTGCCAAA
* * * *
30743944 CCAAACTGCCTTGCCGAA-ATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 CCAAACTGCCCTGCC-AATATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAA
* * *
30744008 TTTAGGACTAAATGGATTGTCATG
65 ATT-GGACGAAATAGATTGTCATG
* * * * * *
30744032 TCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAA
1 CCAAACTGCCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAAA
30744097 TTGGAACGAAATAGACTT-TCATG
66 TTGG-ACGAAATAGA-TTGTCATG
* * * *
30744120 CCAAACTACTCC-GCCAATATTTGATTGAATGAAAAGTTAAGAGGACATTTCTGTAAGCATTTAA
1 CCAAACTGC-CCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAA
* *
30744184 ATTGGGACGAAATGGATTGTAATG
65 ATT-GGACGAAATAGATTGTCATG
*
30744208 CAAAACT
1 CCAAACT
30744215 ACCTAGCCAA
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
87 6 0.04
88 139 0.92
89 6 0.04
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (87 bp):
CCAAACTGCCCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAAA
TTGGACGAAATAGATTGTCATG
Found at i:30744500 original size:100 final size:100
Alignment explanation
Indices: 30744308--30746475 Score: 1125
Period size: 100 Copynumber: 22.5 Consensus size: 100
30744298 TGACTGTCAG
* * * * * * *
30744308 GCCAAAGTGCCCTGCTAAAATTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* *
30744373 TTGGGACTAAATGGATTGTCATGCAAAACTACCCA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* ** * *
30744408 GCCAAATTTCCCTGCCACAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATCAGCATTCAG
1 GCCAAATTGCCCTGCCA-AATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * * * * **
30744472 ATTGAGACGAAATAGACTATAAAGCAAAATTATGCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
** * * * * * *
30744508 GCCAACCTGCCCTGCCAAAATTGATTGAACGCAAAGA-TAGGAGAATATTTCTATAAGCATTCAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAA-ATTAAGAGGACATTTTTATAAGCATTCAA
*
30744572 ATTGGGACAAAATGGGCTGTCATGCAAAACTACCCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * *
30744608 ACCAAATTGCCTTGTCAAAATTTGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-A
1 GCCAAATTGCCCTG-CCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
30744672 ATTCGGGA-AGAAATAGTCTGTCATGTC-AAACTACCCT
65 ATT-GGGACA-AAATGGACTGTCATG-CAAAACTACCCA
* * * * * * **
30744709 GCCAAACTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATAATT-A
1 GCCAAATTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTTTA-TAAGCATTCA
* * * * *
30744773 AATTGGAACGAAATGGAATGTCAAGCCAAACTA--C-
64 AATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
30744807 -TC----TG---T-CAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* ** * *
30744863 TTGGGACAACATTTACTGT-A-G-----C-GCCAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * ** * * **
30744890 GCC-----GCCCTACTAAAATTAATTGATTGATAAATTAAAATGACATTTCAATAAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTC-AA
* * *
30744950 ATTGGGACGAAATGGACTGTCATGCCAAACTACCAA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
** * * * * *
30744986 GCCAAGCTGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAATTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* ** * * *
30745051 ATTGGAATGAAATGGGCTGTCATTCCAAACTACCCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * ** * * * *
30745087 GCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAA
1 GCCAAATTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * ** *
30745152 TTTGGAACGAAATGGATTGTCATGTTAAACTTCCCTA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCC-A
* *** * * * * * *
30745189 G-CAAACTGCCCTGCCAATATTTTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAA
1 GCCAAATTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
30745253 ATTGGGACAAAATGCACTATCATGC-CAACT----A
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * *
30745284 --C----T---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTCAA
1 GCCAAATTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
** * * * *
30745340 ATTGGGACAAAATTAATTGTTAAGCTAAACTACCCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * * *
30745376 ACCAAACTGCCCTGCCAAAATTGATTGAAAGTAAAAATAAGAGGAAATTTATATCAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
** * *
30745441 TTGCAACAAAATGAACTGTCACGCAAAACTACCCA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
30745476 ACCAAACTGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTA
1 GCCAAATTG-CCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCA
* * *
30745541 ATTTGGGACGAAATGGA-T-TC-T-C---A-TA-TCA
64 AATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * **
30745569 ---AAA-TACCCTGTCAATATTT-ACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCA
1 GCCAAATTGCCCTGCCAA-ATTTGA-TTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCA
* * * * *
30745629 AATTGGAACGAAATAGATTGTCATGCCAAACT----A
64 AATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * *
30745662 --C---TT-CAC--CAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
30745719 TTGGGA-AAAATGGACTG---T----AA-T-----
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * *
30745740 GCCAAACTGCCCTGCCAAAATTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAATTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
*** * *
30745805 ATTGGGAGGGAATTGAC--T-AT-C---A-GA---A
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * *
30745830 --CAAACTGCCCTGCTAAAATTCATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* ** * * * *
30745893 TTAGGATGAAATGGACTGTCATTCGAAACTATCAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
** *
30745928 GCCAAATTGCCCTGCCAAAATTTGATTGAATG-AACTTTAAGAGGATA-TTTTATAAGCATTCAA
1 GCCAAATTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
30745991 ATTAGGACAAAATGGACTGTCATGCCAAACGACCCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
30746027 ACCAAACTGCCCTGCCAAACTTGATTGAATGCAAAAATAAGAGGTCATTTCTATAAGCATTTAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
*
30746092 TTGGGACAAAATGGA-TGGTCATGCCAAACTACCCA
66 TTGGGACAAAATGGACT-GTCATGCAAAACTACCCA
* * * * * *
30746127 GCCAAATTGCCATTCTAAAATTGATTGAATG-ATAAATTAAGAGGACATCTCTATAAGCATTCAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCA-AAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
30746191 ATTGGGACGAAATGGATTGTCATGCAACAC-ACCCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * **
30746226 ACCAAATTGACCAGCCAAAATCGATTGAATGCAAAATTCAGAGGACATTTCTATAATAATTCAAA
1 GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * *
30746291 TTTGGACAAAATGGACTGTCATGCCAAACTACCAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
30746326 GCCAAACTAT-CCC--ACAAATATTGATTAAACGCAAAATTAATAAGACATTTGTATAAG-AGTT
1 GCCAAA-T-TGCCCTGCCAAAT-TTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCA-TT
** * * * * *
30746387 TTAATTGGGACGAAATAGACTGTCATGCCAAATTATCCA
62 CAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCA
* * ** *
30746426 GCAAAATTGCCTTGGAAGAATTTGATTGAATG-AAAATTAAGAAGACATTT
1 GCCAAATTGCCCTGCCA-AATTTGATTGAATGCAAAATTAAGAGGACATTT
30746476 GATAAACCAG
Statistics
Matches: 1597, Mismatches: 358, Indels: 226
0.73 0.16 0.10
Matches are distributed among these distances:
79 1 0.00
80 3 0.00
81 1 0.00
83 2 0.00
84 4 0.00
86 3 0.00
87 220 0.14
88 187 0.12
89 10 0.01
90 10 0.01
91 4 0.00
92 3 0.00
93 5 0.00
94 5 0.00
95 5 0.00
96 8 0.01
97 1 0.00
98 18 0.01
99 173 0.11
100 473 0.30
101 363 0.23
102 98 0.06
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (100 bp):
GCCAAATTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
TTGGGACAAAATGGACTGTCATGCAAAACTACCCA
Found at i:30745803 original size:175 final size:176
Alignment explanation
Indices: 30745486--30745911 Score: 416
Period size: 175 Copynumber: 2.4 Consensus size: 176
30745476 ACCAAACTGC
** * * * * *
30745486 CCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACG
1 CCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACG
* * * * * * *
30745551 AAATGGATTCTCATATCAAAATACCCTGTCAATATTTACTTGAATGCACAATAAAGAGAACATTT
66 AAATGGACTGTAATACCAAAATACCCTGCCAATAATTAATTGAATGCACAATAAAGAGAACATTT
** * * *
30745616 CTATTTGCATTCAAATTGGAACGAAATAGATTGTCATG-CCAAACTA
131 CTATAAGCATTCAAATTGGAACGAAATAGACTATCA-GAACAAACTA
* * *
30745662 -CTTCACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-
1 CCCT-ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAC
* * * * *
30745725 AAAATGGACTGTAATGCCAAACTGCCCTGCCAA-AATTAGATTGAATGCA-ATATTAAGA-AGAC
65 GAAATGGACTGTAATACCAAAATACCCTGCCAATAATTA-ATTGAATGCACA-ATAAAGAGA-AC
* * * * *
30745787 ATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTATCAGAACAAACTG
127 ATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAACAAACTA
* * * * * *
30745837 CCCTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATG
1 CCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACG
30745901 AAATGGACTGT
66 AAATGGACTGT
30745912 CATTCGAAAC
Statistics
Matches: 203, Mismatches: 40, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
174 53 0.26
175 97 0.48
176 53 0.26
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (176 bp):
CCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACG
AAATGGACTGTAATACCAAAATACCCTGCCAATAATTAATTGAATGCACAATAAAGAGAACATTT
CTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAACAAACTA
Found at i:30745922 original size:87 final size:86
Alignment explanation
Indices: 30745498--30745914 Score: 381
Period size: 87 Copynumber: 4.8 Consensus size: 86
30745488 CTACCAATGT
* * * * * *
30745498 TTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATTCTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
* * * * *
30745563 ATATCAAAATACCCTGTCAATA
66 AT-GCAAACTGCCCTGCCAAAA
* * * * ** * * *
30745585 TTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGT
1 TTGA-TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
* * *
30745650 CATGCCAAACT-ACTTCACCAAAA
65 CATG-CAAACTGCCCT-GCCAAAA
* * * *
30745673 TTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTGT
1 -TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
30745737 AATGCCAAACTGCCCTGCCAAAA
65 CATG-CAAACTGCCCTGCCAAAA
* * * * * *
30745760 TTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTAT
1 TT-GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
30745825 CA-GAACAAACTGCCCTGCTAAAA
65 CATG--CAAACTGCCCTGCCAAAA
* * * *
30745848 TTCATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
30745913 AT
66 AT
30745915 TCGAAACTAT
Statistics
Matches: 263, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
86 2 0.01
87 130 0.49
88 128 0.49
89 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (86 bp):
TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
ATGCAAACTGCCCTGCCAAAA
Done.