Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3281
Parameters: 2 7 7 80 10 50 1000
Length:  100293

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2291--2330
19
2.1
19
86
9
55
52
0
2
45
1.14
2289--2343
28
2.0
28
82
7
67
52
1
1
43
1.22
3641--3683
18
2.4
18
92
0
68
37
0
9
53
1.33
3641--3683
6
7.2
6
86
0
59
37
0
9
53
1.33
3837--3896
27
2.4
27
83
10
74
40
0
30
30
1.57
4040--4135
39
2.5
39
80
6
108
20
23
28
27
1.99
5554--5628
31
2.4
31
79
0
96
38
6
10
44
1.66
35716--35754
20
1.9
21
89
5
62
66
0
2
30
1.05
35883--35923
15
2.5
17
88
7
59
56
0
0
43
0.99
37263--37303
12
3.7
12
75
18
52
31
39
2
26
1.70
37263--37313
21
2.4
21
86
0
75
33
37
1
27
1.68
39708--39748
19
2.0
21
86
9
59
34
0
9
56
1.32
46770--46961
99
1.9
98
83
5
244
43
17
9
29
1.81
49044--49086
22
2.0
22
90
0
68
34
2
16
46
1.60
52307--52349
22
2.0
22
90
0
68
34
2
16
46
1.60
57613--57666
22
2.5
21
82
11
65
57
7
11
24
1.58
61344--61377
15
2.3
15
89
0
50
35
20
0
44
1.52
63237--63275
20
2.1
19
90
9
62
38
20
0
41
1.53
63069--63515
223
2.0
223
100
0
894
34
24
4
36
1.77
63460--63498
20
2.1
19
90
9
62
38
20
0
41
1.53
65940--66031
44
2.1
43
84
11
116
36
23
19
19
1.95
67344--67417
29
2.6
29
83
10
89
50
4
0
45
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70020--70096
25
3.1
25
76
12
70
15
10
3
70
1.30
70088--70131
16
2.6
16
85
7
52
45
2
0
52
1.13
71648--71692
19
2.3
19
88
11
65
53
2
0
44
1.13
71669--71713
14
3.3
14
79
17
58
57
0
0
42
0.98
76316--76349
6
5.5
6
96
3
59
29
0
20
50
1.49
78760--78814
19
2.8
20
78
10
60
52
3
7
36
1.47
78785--78861
29
2.7
27
74
16
84
45
3
5
45
1.44
82107--82473
46
7.6
49
87
8
440
34
14
22
28
1.93
82107--82473
98
3.7
97
85
9
501
34
14
22
28
1.93
82121--82473
196
1.8
196
92
0
607
34
14
22
28
1.93
82437--82582
37
4.0
37
91
1
233
36
15
22
24
1.93
82107--82462
150
2.4
149
89
4
467
34
14
21
28
1.93
82107--82478
144
2.6
143
88
7
382
34
14
22
28
1.93
84629--84659
15
2.0
16
93
6
55
38
12
0
48
1.42
85575--85793
45
4.9
45
91
0
330
39
15
19
25
1.91
85575--85793
90
2.4
90
92
0
375
39
15
19
25
1.91
89089--89125
17
2.1
19
85
10
51
75
8
2
13
1.13
89565--89614
14
3.8
13
79
15
50
62
2
2
34
1.18
90483--90513
8
3.8
8
95
4
53
25
12
51
9
1.70
90924--91385
44
10.7
45
71
13
237
25
22
20
30
1.99
90924--91300
87
4.3
87
74
7
293
25
23
21
29
1.99
90966--91384
174
2.4
170
84
6
533
26
22
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92715--92749
1
35.0
1
100
0
70
0
0
0
100
0.00
99000--99035
17
2.1
18
94
5
65
25
27
22
25
2.00

Tables:   1

The End!