genome.fa.s241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold646
Parameters: 2 7 7 80 10 50 1000
Length:  91490

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999--2059	29	2.3	27	78	18	65	59	0	6	34	1.24
6473--6618	43	3.4	41	79	11	134	24	19	23	32	1.98
10052--10097	25	1.9	25	86	8	69	60	0	4	34	1.16
10573--10743	60	2.9	58	86	6	222	21	4	47	26	1.68
10573--10743	30	5.8	30	85	5	201	21	4	47	26	1.68
11503--11546	13	3.3	13	84	6	61	63	6	13	15	1.49
11483--11546	14	4.5	14	79	11	67	62	4	12	20	1.47
11529--11765	75	3.2	73	82	9	257	35	19	19	26	1.95
11713--11820	52	2.1	52	89	5	164	39	15	13	30	1.87
11838--12076	77	3.2	75	83	4	293	35	20	18	25	1.96
12020--12130	54	2.1	54	89	0	168	41	15	12	30	1.84
11533--12234	309	2.3	304	93	1	1181	36	18	18	27	1.94
12272--12639	122	3.0	122	93	2	587	39	22	13	24	1.90
16501--16652	75	2.0	76	94	5	274	42	17	25	15	1.88
17502--17702	53	3.5	53	69	19	163	25	14	21	37	1.92
17410--17774	119	3.0	119	90	4	527	24	13	22	39	1.90
17975--18478	74	6.7	73	70	11	293	26	18	19	35	1.95
17966--18472	149	3.4	148	69	11	447	27	17	19	35	1.94
17975--18511	75	7.1	74	71	10	338	26	18	19	35	1.95
17815--18506	304	2.3	304	92	3	1142	27	18	18	35	1.94
18495--18537	13	3.3	13	84	12	61	16	13	6	62	1.51
19304--19478	30	5.8	30	90	1	237	26	48	4	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23460--23576	43	2.7	42	79	10	121	35	23	16	24	1.95
23509--23614	44	2.5	42	84	7	133	33	26	19	20	1.97
27912--27958	22	2.2	23	85	14	66	31	6	0	61	1.21
27934--28051	39	3.0	38	76	11	112	31	3	1	63	1.21
27924--28048	3	41.7	3	67	24	52	32	3	1	63	1.20
31251--31296	20	2.3	20	96	0	83	41	6	4	47	1.49
32077--32111	2	17.5	2	93	0	61	45	0	2	51	1.16
32704--32744	21	2.0	21	85	9	57	60	0	0	39	0.96
32702--32744	22	2.0	21	82	13	52	60	0	0	39	0.97
35259--35317	29	2.0	29	96	0	109	37	22	6	33	1.80
37567--37749	92	2.0	92	92	3	307	47	15	8	28	1.74
40558--40601	20	2.2	20	88	11	65	47	0	0	52	1.00
41286--41349	33	1.9	33	96	0	119	35	10	23	29	1.89
53252--53312	30	2.1	30	90	3	97	6	0	14	78	0.94
59807--59840	6	5.5	6	96	3	59	70	0	14	14	1.17
59985--60029	23	1.9	24	90	4	74	35	4	20	40	1.72
61382--61473	46	2.0	46	100	0	184	34	21	4	39	1.73
61999--62198	103	1.9	104	87	3	296	30	17	5	47	1.70
64184--64287	39	2.5	43	86	12	162	38	8	5	47	1.58
65639--65696	25	2.4	25	82	8	75	50	1	3	44	1.29
66715--66825	31	3.7	30	77	8	100	40	12	11	35	1.80
67420--67454	18	1.9	18	88	0	52	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68397--68432	11	3.4	10	88	11	54	50	0	0	50	1.00
71690--71854	84	2.0	84	89	2	251	31	18	8	41	1.80
73681--73718	18	2.1	19	85	5	51	31	0	2	65	1.06
83856--83898	21	2.0	21	82	8	52	2	20	16	60	1.46

Tables:   1

The End!