Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3213
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28913
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Found at i:1079 original size:257 final size:262
Alignment explanation
Indices: 1--2094 Score: 1328
Period size: 257 Copynumber: 7.9 Consensus size: 262
* * *
1 GGTGACAGAAT-TTCAATCTTCAACCTACCCCACTACTGCTTAGCGGTGATAGGACTAA-GGCTT
1 GGTGACAGAATCTCCAATCTTCAACCTACTCGACTACTGCTTAG-GGTGATA-GACTAATGGCTT
* * * * * * * *
64 CAATCTATTTCCTTCCACTATATTGAGAAGATAAGATTCGCTATCTTCGAAGAGCTGCTCCACTA
64 AAATCTACTT-C-TCCACTATGTTGGGAAGATAAGAATCACCATCTTC---GATCTGCTCCACTA
* * * * *
129 CTGCTTAGGGTCACAGAATCTGCAATCATCAACCTACTCCACTACTCCTTA-GGTGGTAGGACTA
124 CTGCTTA-GGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
* * * * * *
193 AT-GC--TAAATCTGGTTT-TCCACT-CTCTTGAAAGATAAGA-TTCACCATCTTCGATGTTC-C
188 ATGGCTTTAAATCT-ATTTCTCCACTAGTATTGGAAGATAAGATTTCACCATCTTCGATCTGCTC
* *
251 ACTAAT-CCTA
252 ACTACTGCTTA
* * * * * *
261 GGTGAAAAAATCTGCAATCTTCGACCGACTC--CTACTGCTTAGATTAGGTGATTGAGCTAATGG
1 GGTGACAGAATCTCCAATCTTCAACCTACTCGACTACTGCTTAG----GGTGATAGA-CTAATGG
* * *
324 CTTTAAAT-TGCTTCTCCACTATTTTGGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTAC
61 C-TTAAATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGATCTGCTCCACTAC
* * *
387 TGCTTAAGTGACAGAATCTGTAATCTTCAACCTACTCCACTTA-TAGCTTAGGGTGATAGGACTA
125 TGCTTAGGTGACAAAATCTGCAATCTTCAACCTACTCCAC-TACT-GCTTAGGGTGATAGGACTA
* *
451 ATGGC-TTAAATCTACTCTACCGGTCTCC-C-CGTATTGGAAGAAAAAAGATTT-ACCATCTTC-
188 ATGGCTTTAAATCTA-T-T-----TCTCCACTAGTATTGGAAG--ATAAGATTTCACCATCTTCG
511 ATCTGCATCACTACTGCTTAA
244 ATCTGC-TCACTACTGCTT-A
* * * *
532 GGTGACAGAATCTGCAATCTTCAACCTACT-TACTACTGCTTAGGCTGATAGACTGAT-GCTTAA
1 GGTGACAGAATCTCCAATCTTCAACCTACTCGACTACTGCTTAGGGTGATAGACTAATGGCTTAA
* * * * *
595 ATCTGCTTCCCCACTGTGTTGGGAAGATAAGAGATCACCATCTACGATCTGCTCGACTACTGCTT
66 ATCTACTTCTCCACTATGTTGGGAAGATAAGA-ATCACCATCTTCGATCTGCTCCACTACTGCTT
* * * *
660 AGGGTGACAGAATCTGTAATCTTCAA-CTGACTCCAATAC-GTCTTTGGGTGATAGGACTAATGG
130 A-GGTGACAAAATCTGCAATCTTCAACCT-ACTCCACTACTG-CTTAGGGTGATAGGACTAATGG
** ** * * *
723 CTCGAAATCTCCTTCTCCA-TTGTATTTGGAAGATAGGA-TTCACCA-CTTCGATCTGCCCACTA
192 CTTTAAATCTATTTCTCCACTAGTA-TTGGAAGATAAGATTTCACCATCTTCGATCTGCTCACTA
*
785 CAGCTTTA
256 CTGC-TTA
* *
793 GGTGACAGAATATGCAAATCTTCAACCTACTCGACTACTGC-TAGGGTG-TAGGACTAATGGC-T
1 GGTGACAGAATCT-CCAATCTTCAACCTACTCGACTACTGCTTAGGGTGATA-GACTAATGGCTT
* * *
855 AAATC-CCTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGATC-GC-CCA-TACTTCT
64 AAATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGATCTGCTCCACTACTGCT
*
916 TAGGGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGCGAT-GGACTAATGGC
129 TA-GGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
*
980 TTTAAATCTATTTCTCCACTAGTATTGGGAAGATAAGATTTCACCATATTCGATCTGCTCACTAC
193 TTTAAATCTATTTCTCCACTAGTATT-GGAAGATAAGATTTCACCATCTTCGATCTGCTCACTAC
*
1045 TGCATA
257 TGCTTA
*** * * *
1051 GGTCTTACACTCTCCAATCTTTAACCTACTCCG-CTACTGCTTA-GGTGATAGACTAATGGCTTA
1 GGTGACAGAATCTCCAATCTTCAACCTACT-CGACTACTGCTTAGGGTGATAGACTAATGGCTTA
* * * * * *
1114 AATCTACTTTTCCACTATCTTGAG-AGATATGATTCACCATCTTCGATCCTGCTCCACTACTTC-
65 AATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGAT-CTGCTCCACTACTGCT
* * * * * *
1177 TAGGTGACAGAAATCTGCAATCTTCAACCTA-TTCACTGGCTACTTAGGGAGATTGGGCTAATGG
129 TAGGTGACA-AAATCTGCAATCTTCAACCTACTCCACT-ACTGCTTAGGGTGATAGGACTAATGG
* * * * * * * *
1241 --GTAATATGC-A--ACTTCATTA-TCTTGAAAAGATATGA-TTCACCATCTTCAATC-GCGTCC
192 CTTTAA-AT-CTATTTCTCCACTAGTATTG-GAAGATAAGATTTCACCATCTTCGATCTGC-T-C
1298 ACTACTGCTTA
252 ACTACTGCTTA
* * * *
1309 -GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTGATAGGACTGATGGCCTT
1 GGTGACAGAATCTCCAATCTTCAACCTACTCGACTACTGCTTAGGGTGATA-GACTAATGG-CTT
* * * *
1373 AAATCTGCTTCTCCACTCT-TTTGG-AGATAAGAATCACCATCTTCGATCTGCTCGACTACTGCT
64 AAATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGATCTGCTCCACTACTGCT
* * *
1436 TAGGTGAC-AAATCTTGTAATCTTC-A-CTGACT-CACTACTGCTTAGGTTGATAGG-TTAATGC
129 TAGGTGACAAAATC-TGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATG-
* * * * * * *
1496 GC-TGAAATCTACTTCATTCA-TTGTAATTGGAAGATGGAGA-TTC-CCATATTTGATCTGCTCC
191 GCTTTAAATCTATTTC-TCCACTAGT-ATTGGAAGAT-AAGATTTCACCATCTTCGATCTGCT-C
* *
1557 ACAACTGCTCA
252 ACTACTGCTTA
* ** * * *
1568 GGTGATAGAATC-GAAATCTTCAAACCTACTCCACTAAAATGCCTTAGGTGATAGGGAAGAGGAT
1 GGTGACAGAATCTCCAATCTTC-AACCTACTCGACT--ACTG-CTTAGG-G-T---G-ATA-GA-
* * * * * *
1632 CTAATGGCTTTAAATCTACTTATCCGCTGTATT-GGAAGAT-AGGATCTCC-TCTTCGATCTTGC
54 CTAATGGC-TTAAATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGATC-TGC
*
1694 TCCACTACTGGCTT-GGTTGACCAGGAATCTGCAATCTTCAACCTACTCCACTA-TGGCTTAGGG
117 TCCACTACT-GCTTAGG-TGA-CA-AAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGG
* * * ** * * **
1757 CTGATCGGACTGATGGCTTCAAAATCTGCTTCTCCCACTTA-TATTGGGAAGGTAAGATTTTATT
177 -TGATAGGACTAATGGCTT-TAAATCTATTTCT-CCAC-TAGTATT-GGAAGATAAGATTTCACC
* * *
1821 ATATTCGATCTGCAAGCCCACTACTGTTTA
237 ATCTTCGATCT----GCTCACTACTGCTTA
** * * *
1851 GGGTGACAGAATCTTGTATATGTTC-ACCTACTCCACTACTGCTGTAGGGAGATAGGACTAATGG
1 -GGTGACAGAATC-TCCA-ATCTTCAACCTACTCGACTACTGCT-TAGGGTGATA-GACTAAT-G
* * * * * * * * **
1915 GCTTAAATCTTC-TCTCCAACTGTTTTTGGGTTTTGAAGATAAGGATTCACTATTTTTGGTCCAC
60 GCTTAAATCTACTTCTCC-ACT-ATGTT-GG----GAAGATAA-GAATCACCATCTTCGATCTGC
* * * * *
1979 TCCACTAACTTCTTAGGGTGACAGAATCTGTAATCTTCAA-CTATTCCACTACTGCTTAGGGAGA
117 TCCACT-ACTGCTTA-GGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
2043 TAGGACTAATGGCTTTTAATCT-TCTTCTCCACTA-TATTAGGAAGATAAGATT
180 TAGGACTAATGGCTTTAAATCTAT-TTCTCCACTAGTATT-GGAAGATAAGATT
2095 CACACAATTC
Statistics
Matches: 1469, Mismatches: 215, Indels: 281
0.75 0.11 0.14
Matches are distributed among these distances:
255 6 0.00
256 80 0.05
257 178 0.12
258 128 0.09
259 133 0.09
260 101 0.07
261 145 0.10
262 84 0.06
263 25 0.02
264 12 0.01
265 7 0.00
266 37 0.03
267 31 0.02
268 59 0.04
269 58 0.04
270 47 0.03
271 40 0.03
272 12 0.01
273 9 0.01
274 9 0.01
275 18 0.01
276 24 0.02
277 17 0.01
278 19 0.01
279 28 0.02
280 15 0.01
281 9 0.01
282 18 0.01
283 40 0.03
284 31 0.02
285 28 0.02
286 14 0.01
287 7 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (262 bp):
GGTGACAGAATCTCCAATCTTCAACCTACTCGACTACTGCTTAGGGTGATAGACTAATGGCTTAA
ATCTACTTCTCCACTATGTTGGGAAGATAAGAATCACCATCTTCGATCTGCTCCACTACTGCTTA
GGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTT
AAATCTATTTCTCCACTAGTATTGGAAGATAAGATTTCACCATCTTCGATCTGCTCACTACTGCT
TA
Found at i:1526 original size:129 final size:130
Alignment explanation
Indices: 1--2097 Score: 1556
Period size: 130 Copynumber: 15.8 Consensus size: 130
* *
1 GGTGACAGAAT-TTCAATCTTCAACCTACCCCACTACTGCTTAGCGGTGATAGGACTAA-GGCTT
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG-GGTGATAGGACTAATGGCTT
* * * * * *
64 CAATCTATTTCCTTCCACTATATTGAGAAGATAAGATTCGCTATCTTCGAAGAGCTGCTCCACTA
65 AAATCTACTT-C-TCCACTGTATTG-GAAGATAAGATTCACCATCTTC---GATCTGCTCCACTA
129 CTGCTTA
124 CTGCTTA
* * * *
136 GGGTCACAGAATCTGCAATCATCAACCTACTCCACTACTCCTTA-GGTGGTAGGACTAAT-GC-T
1 -GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
** * * * * * * *
198 AAATCTGGTTTTCCACTCTCTTGAAAGATAAGATTCACCATCTTCGA--TGTTCCACTAAT-CCT
65 AAATCTACTTCTCCACTGTATTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
260 A
130 A
* * * * *
261 GGTGAAAAAATCTGCAATCTTCGACCGACT-C-CTACTGCTTAGATTAGGTGAT-TGAGCTAATG
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG----GGTGATAGGA-CTAATG
* * *
323 GCTTTAAAT-TGCTTCTCCACTATTTTGGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTA
61 GC-TTAAATCTACTTCTCCACTGTATT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
386 CTGCTTA
124 CTGCTTA
* *
393 AGTGACAGAATCTGTAATCTTCAACCTACTCCACTTA-TAGCTTAGGGTGATAGGACTAATGGCT
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACT-GCTTAGGGTGATAGGACTAATGGCT
* * * *
457 TAAATCTACTCTACCGGTCTCCCCGTATTGGAAGAAAAAAGATTTACCATCTTC-ATCTGCAT-C
64 TAAATCTACT-T--C--TC-CACTGTATTGGAAG--ATAAGATTCACCATCTTCGATCTGC-TCC
520 ACTACTGCTTAA
120 ACTACTGCTT-A
* * *
532 GGTGACAGAATCTGCAATCTTCAACCTACT-TACTACTGCTTAGGCTGATA-GACTGAT-GCTTA
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * * * *
594 AATCTGCTTCCCCACTGTGTTGGGAAGATAAGAGATCACCATCTACGATCTGCTCGACTACTGCT
66 AATCTACTTCTCCACTGTATT-GGAAGATAAGA-TTCACCATCTTCGATCTGCTCCACTACTGCT
659 TA
129 TA
* * *
661 GGGTGACAGAATCTGTAATCTTCAA-CTGACTCCAATAC-GTCTTTGGGTGATAGGACTAATGGC
1 -GGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTG-CTTAGGGTGATAGGACTAATGGC
* * * * *
724 TCGAAATCTCCTTCTCCATTGTATTTGGAAGATAGGATTCACCA-CTTCGATCTGC-CCACTACA
63 T-TAAATCTACTTCTCCACTGTA-TTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
787 GCTTTA
126 GC-TTA
* *
793 GGTGACAGAATATGCAAATCTTCAACCTACTCGACTACTGC-TAGGGTG-TAGGACTAATGGC-T
1 GGTGACAGAATCTGC-AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
* * * *
855 AAATC-CCTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGATC-GC-CCA-TACTTCT
65 AAATCTACTTCTCCACTGTATT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
916 TA
129 TA
* *
918 GGGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGCGAT-GGACTAATGGCTT
1 -GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC-T
* *
982 TAAATCTATTTCTCCACTAGTATTGGGAAGATAAGATTTCACCATATTCGATCTGCT-CACTACT
64 TAAATCTACTTCTCCACT-GTATT-GGAAGATAAGA-TTCACCATCTTCGATCTGCTCCACTACT
*
1046 GCATA
126 GCTTA
*** * * * * *
1051 GGTCTTACACTCTCCAATCTTTAACCTACTCCGCTACTGCTTA-GGTGATA-GACTAATGGCTTA
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * * *
1114 AATCTACTTTTCCACTATCTT-GAGAGATATGATTCACCATCTTCGATCCTGCTCCACTACTTC-
66 AATCTACTTCTCCACTGTATTGGA-AGATAAGATTCACCATCTTCGAT-CTGCTCCACTACTGCT
1177 TA
129 TA
* * * * * * *
1179 GGTGACAGAAATCTGCAATCTTCAACCTA-TTCACTGGCTACTTAGGGAGATTGGGCTAATGG-G
1 GGTGACAG-AATCTGCAATCTTCAACCTACTCCACT-ACTGCTTAGGGTGATAGGACTAATGGCT
* * * * * * *
1242 TAATATGCAAC-T-T-CATTATCTTGAAAAGATATGATTCACCATCTTCAATC-GCGTCCACTAC
64 TAA-AT-CTACTTCTCCACTGTATTG-GAAGATAAGATTCACCATCTTCGATCTGC-TCCACTAC
1303 TGCTTA
125 TGCTTA
* *
1309 -GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTGATAGGACTGATGGCCTT
1 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG-CTT
* * * * *
1373 AAATCTGCTTCTCCACTCTTTTGG-AGATAAGAATCACCATCTTCGATCTGCTCGACTACTGCTT
65 AAATCTACTTCTCCACTGTATTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
1437 A
130 A
* * *
1438 GGTGACA-AATCTTGTAATCTTC-A-CTGACT-CACTACTGCTTAGGTTGATAGG-TTAATGCGC
1 GGTGACAGAATC-TGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATG-GC
* * * * * * *
1498 TGAAATCTACTTCATTCATTGTAATTGGAAGATGGAGATTC-CCATATTTGATCTGCTCCACAAC
63 TTAAATCTACTTC-TCCACTGT-ATTGGAAGAT-AAGATTCACCATCTTCGATCTGCTCCACTAC
*
1562 TGCTCA
125 TGCTTA
* * * *
1568 GGTGATAGAATC-GAAATCTTCAAACCTACTCCACTAAAATGCCTTAGGTGATAGGGAAGAGGAT
1 GGTGACAGAATCTGCAATCTTC-AACCTACTCCACT--ACTG-CTTAGG-G-T---G-ATAGGA-
* * * *
1632 CTAATGGCTTTAAATCTACTTATCCGCTGTATTGGAAGATAGGA-TCTCC-TCTTCGATCTTGCT
55 CTAATGGC-TTAAATCTACTTCTCCACTGTATTGGAAGATAAGATTCACCATCTTCGATC-TGCT
1695 CCACTACTGGCTT-
118 CCACTACT-GCTTA
* *
1708 GGTTGACCAGGAATCTGCAATCTTCAACCTACTCCACTA-TGGCTTAGGGCTGATCGGACTGATG
1 GG-TGA-CA-GAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGG-TGATAGGACTAATG
* * * * ** *
1772 GCTTCAAAATCTGCTTCTCCCACTTATATTGGGAAGGTAAGATTTTATTATATTCGATCTGCAAG
61 GCTT--AAATCTACTTCT-CCAC-TGTATT-GGAAGATAAGA-TTCACCATCTTCGATCTGC---
* *
1837 CCCACTACTGTTTA
117 TCCACTACTGCTTA
* * *
1851 GGGTGACAGAATCTTGTATATGTTC-ACCTACTCCACTACTGCTGTAGGGAGATAGGACTAATGG
1 -GGTGACAGAATC-TGCA-ATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAAT-G
* * * * * * **
1915 GCTTAAATCTTC-TCTCCAACTGTTTTTGGGTTTTGAAGATAAGGATTCACTATTTTTGGTCCAC
61 GCTTAAATCTACTTCTCC-ACTG-TATT--G----GAAGATAA-GATTCACCATCTTCGATCTGC
*
1979 TCCACTAACTTCTTA
117 TCCACT-ACTGCTTA
* * *
1994 GGGTGACAGAATCTGTAATCTTCAA-CTATTCCACTACTGCTTAGGGAGATAGGACTAATGGCTT
1 -GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC-T
* * *
2058 TTAATCTTCTTCTCCACTATATTAGGAAGATAAGATTCAC
64 TAAATCTACTTCTCCACTGTATT-GGAAGATAAGATTCAC
2098 ACAATTCTTT
Statistics
Matches: 1580, Mismatches: 236, Indels: 293
0.75 0.11 0.14
Matches are distributed among these distances:
122 9 0.01
123 1 0.00
124 24 0.02
125 30 0.02
126 48 0.03
127 76 0.05
128 122 0.08
129 163 0.10
130 218 0.14
131 144 0.09
132 129 0.08
133 29 0.02
134 56 0.04
135 57 0.04
136 27 0.02
137 58 0.04
138 41 0.03
139 49 0.03
140 67 0.04
141 69 0.04
142 52 0.03
143 80 0.05
144 10 0.01
145 19 0.01
146 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (130 bp):
GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
AATCTACTTCTCCACTGTATTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
Found at i:7558 original size:132 final size:132
Alignment explanation
Indices: 3529--18289 Score: 12790
Period size: 132 Copynumber: 112.1 Consensus size: 132
3519 CATTGACCTA
*
3529 CTCCACTACTGCTCA-GGTGACAGAATCTG-AATCTTTCAACCTACTCCACTACTGCTTGAGCGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTT-AG-GG
* * *
3592 TGGATA-GACTAAAGGTACTTAGATCTTGCTTCTCCACTGTATTGGGGACGATAAGAATTCACC-
63 T-GATAGGACTAATGG--CTTAAATC-TGCTTCTCCACTGTATT-GGGAAGATAAG-ATTCACCA
3655 TCTTCGATCTG
122 TCTTCGATCTG
3666 CT-CACTTACTGCTTTAGGGTGACAGAATCCTAG-AATC-TCAACCTACTCGCACTACTGCTTAG
1 CTCCAC-TACTGC-TTAGGGTGACAGAAT-CT-GCAATCTTCAACCTACTC-CACTACTGCTTAG
* * * *
3728 GTTGATTGG-CTGATGGCTTAAAATC-GCTTCTCCACATGTATTGGGGAAGGTAAGATTCA-CAT
61 GGTGATAGGACTAATGGCTT-AAATCTGCTTCTCCAC-TGTATT-GGGAAGATAAGATTCACCAT
*
3790 C-TCGATGTG
123 CTTCGATCTG
* *
3799 CTGTCCAAACTACTGCTTAGGGTGACAG-ATCTGCTATCTTCAACCTACTCAACTTACAACT-CT
1 C--TCC--ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTC--C--ACTACTGCT
* * * *
3862 TAGAGTAGAT-TGAGC-AATGGCTTAAATCAGCTTCTCCA-TGTATCTTGGGAAGAAGAATGATT
58 TAGGGT-GATAGGA-CTAATGGCTTAAATCTGCTTCTCCACTGTA--TTGGGAAG-ATAA-GATT
3924 CACCATCTTC-A-CTG
117 CACCATCTTCGATCTG
* *
3938 CTCGCTCATA-TGCTTAGGGTGACAG-ATCTCCAATTCTTCAACCTACTCCACCTACTGCTTA-G
1 CTC-CAC-TACTGCTTAGGGTGACAGAATCTGCAA-TCTTCAACCTACTCCA-CTACTGCTTAGG
* * * *
4000 GTGAATAGGACTGA-GGCGTAAAT-TGCTTCT-CA-AG--TTGTGGAAGATAAGAATCA--ATCT
62 GTG-ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG-GGAAGATAAGATTCACCATCT
4057 TCGATCTG
125 TCGATCTG
* * *
4065 ACT-TACTACTGC-TAGCGTGATAGAATC-GCAAATCTTACAACCTACTCCCAACTACTGCTTA-
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGC-AATCTT-CAACCTACT-CC-ACTACTGCTTAG
4126 GGTGATCACGGAACTAAT-GCTTAAATCTGCTTCTCCACTGT-TTGGGAAAGATAAAGATTCACC
61 GGTGAT-A-GG-ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG-AAGAT-AAGATTCACC
4189 ATCTTCGATCTG
121 ATCTTCGATCTG
* *
4201 CTTGCGA-TAC--C-TA-GGTGACAGAAT-TGAAATCTTCAA-CTACTCCACTACTGCTTAGGGT
1 C-T-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * *
4259 GATAGGACTAATGGCTTAAACTCTACTTCTCCACTAT-TTGGGAAGATAAGAGTCACCATCTTTC
64 GATAGGACTAATGGCTTAAA-TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTC
4323 GATCTG
127 GATCTG
* * *
4329 CTCCACTACTGCTTAGGGTGACAGAATCT--AA-C-TC-ACCTACTACACTGACTACTTTAAGGT
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT-ACTGC-TTAGGGT
* * ** * *
4389 GGTAAGACTAATGGCTTAAATCCCCATTTCTCCACTGATGTTGGGAAGATAAGAATCA-CATC-T
64 GATAGGACTAATGGCTTAAATCTGC--TTCTCCACTG-TATTGGGAAGATAAGATTCACCATCTT
4452 CGATCTG
126 CGATCTG
* * *
4459 CTCTCACTACTGCTTAGGGTCAAAGAATCAT-AAATCTTC-A-CTACTCCAACTACTGCTTAGGG
1 CTC-CACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCC-ACTACTGCTTAGGG
* * * * * ** *
4521 TGATAAGACTTGATGGCTTTAAATCTGCTTCTCCA-T-TATTCTGGACGGTAAGATTCATTATAT
63 TGATAGGAC-TAATGGC-TTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCT
*
4584 TCGATCTA
125 TCGATCTG
* * *
4592 ATCCACTACTGCTGTAGGGTGAACATGAATCTGCAATCTTCGACCTACTCCACTACTGCTTAGGC
1 CTCCACTACTGCT-TAGGGTG-ACA-GAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
*
4657 TGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATATAGATTCACCATCTTC
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTTC
4722 GATCTG
127 GATCTG
* *
4728 CTCCACTACTACTTA-GGTGACAAGAATCTGCAATCTTCAA-CTGACTCCACTACTGCTTAGGTT
1 CTCCACTACTGCTTAGGGTGAC-AGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGT
* * *
4791 GATTGGCCTAAT-GCTTAAATTCTGCTTTCTCTACCTGTATT-GGAAGATAAGATTCACCATCTT
64 GATAGGACTAATGGCTTAAA-TCTGC-TTCTCCA-CTGTATTGGGAAGATAAGATTCACCATCTT
4854 CGATCTG
126 CGATCTG
* * * *
4861 CTTCCACTACTTGCTTTA-GGTGACAAAGATCTGCAATCTTTCAACCTAGTCCGCTAACTGGTT-
1 C-TCCACTAC-TGC-TTAGGGTGACAGA-ATCTGCAATC-TTCAACCTACTCCACT-ACTGCTTA
* * *
4924 GGGTGATAGGACTACTGG-TTAAATCTGCTTCTCCACTGTATTGGGAA-AT-AGATTTACCATTT
60 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
*
4986 TCGATATG
125 TCGATCTG
* *
4994 AATCCACTACTACTTA-GGTGACAGAATCT-CAATC-TCAACCTTACTCCACTACTGCTTAGTGG
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC-TACTCCACTACTGCTTAG-GG
* * *
5056 TGATAGGACTAATGGCTTAAATATACATCTCCACTGTATT-GGAAGAT-AGATTCACCAT-TTCG
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
5118 ATCTG
128 ATCTG
* * ** * * * *
5123 CTCGACTACTAACTTATTGTGA-AGAATGTGCAATCTTCAACCGACTCCACTTGCTGTTTAGGGG
1 CTCCACTACT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTA-GGG
* * *
5187 TGACTTGGACTAA--GCTTAAATCTACTTC-CCACTGTATTGGGAAGATAGGATTCACCATCTTC
63 TGA-TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
5249 GATCTG
127 GATCTG
* *
5255 CTCCAATACTGCTTA-GGTGACAGAATCTG-AATCTTTCAACCTACTCGACTACTGCTTAGGGTT
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTTAGGG-T
** * * *
5318 G-TA-GACTAATGGCTTAAATCCACTACT-CA-TGT-TTGGGAAGATAAGAATCACCGTCTTCGA
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
*
5378 TCTA
129 TCTG
*
5382 CT-CACTACTTCTTAGGGTGACAAGAATCTGCAATCTTCAA-CTGACTCCACTCAC-GCTTAGGG
1 CTCCACTACTGCTTAGGGTGAC-AGAATCTGCAATCTTCAACCT-ACTCCACT-ACTGCTTAGGG
* * *
5444 TGATTGGACTAATGGCTTAAATTCTGCTTCTCCGCTGTATTGGGAAGATAGGATTCACCATCTTC
63 TGATAGGACTAATGGCTTAAA-TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
5509 -ATCTG
127 GATCTG
* * * *
5514 CTTCC-CTACTGCTCAGGGTGACAGAATCTGAAATGTTC-ACCTACTCC-CTACTGCTTATGGTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* *
5576 ATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAA-ATAGGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
5640 ATG
130 CTG
*
5643 AC-CCACTACTGCTTAGGGTGAC-GAAATCTGCAATCTTCAACC-AGTCCACTACCTG-TTAGGG
1 -CTCCACTACTGCTTAGGGTGACAG-AATCTGCAATCTTCAACCTACTCCACTA-CTGCTTAGGG
** * *
5704 TTG-TAGGGACTAATGGCTTAAATCCACTTCTCCACTGTGTTGGGAAGATAAGAATCACCAATCT
63 -TGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC-ATCT
5768 TCGATCTG
125 TCGATCTG
* * * *
5776 CTCC-CTACTGCTCAGGGTGACAAAATC-GCAA-CTTCAACCTAC-CCACTAATGGCTTAGGCTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTG
*
5837 ATA-GACT-A-GGCTTAAATCTTCTTCTCCACTG--TTGGGAAGATAAGA-TCACCATC-TCGGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC-GA
5895 TC--
129 TCTG
* * *
5897 AT-CACTACTGCTTAGGGTGACAGAATCTGTAATCTTC-A-CTAACTCCA-TACTGTTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* *
5958 ATAGGACTAGATGGC-TAAATCT-CTTCTCACCATTGTGATTTGGGAAGATAGGATTCAACCATC
65 ATAGGACTA-ATGGCTTAAATCTGCTTCT--CCACTGT-A-TTGGGAAGATAAGATTC-ACCATC
6021 TTCGAT-TG
124 TTCGATCTG
*
6029 CT-CACTACTGCTTAAGGTGACAGAATCTGCAATCTT-AACC-ACTACTC-CTACTGCTTAGGGT
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT-C-CACTACTGCTTAGGG-
* * * *
6090 TGATAGGACTAATGGGCTTAAATC-ACTTCTCCACTGTGTTAGGAAGAT-AGAATCACCATCTTC
63 TGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
6153 GATCTG
127 GATCTG
*
6159 CTCCACTACTGCTCAGGGTGACCAGAATCTGCAATCTT-AACCTAACTCCAGCTACTGCTTAGGG
1 CTCCACTACTGCTTAGGGTGA-CAGAATCTGCAATCTTCAACCT-ACTCCA-CTACTGCTTAGGG
*
6223 TGATAGGACTAA-CGCTTAAATCT-CTTCTCCACTTGTATTGGGAAGATAAGAATTCCACC-TCT
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAG-ATT-CACCATCT
6285 TCGATCTG
125 TCGATCTG
**
6293 CT-CACTACT-CTTAGGGTGACAGAATCTGC-ATCTTCAACCTACTCCA-TACTGCTTATGGAAG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGGTG
* *
6354 ATTGG-CTAATGGCTT-AATCT-CTTCTCCAC--TATTTGGAAGA-ATAGATTCACCATCTTCGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTTCGA
*
6413 CGCTG
129 -TCTG
* * * *
6418 CTCCACTATCTAGCTTAGGGTGACAG-ATCTGCAATCTTCAACCTACTCCACAACTACTTAGAGA
1 CTCCACTA-CT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * * * * * * * * *
6482 GATTGGGCTAATGGCTTAAATCTGCTACTTCATTATCTTGAGAAGATATGATTCACCATCTTCAA
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
*
6547 TCCG
129 TCTG
* * *
6551 CTCCACTACTGCTTAGGGTGACAG-TTCTCCAATCTTCAACCTACTCCAGCTAC-GCTTAGGCT-
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCA-CTACTGCTTAGGGTG
* * *
6613 -TAGGACT-ATGGCTTAAATCTGCTTCT-CACTGTGTTTGGAAGAATAAGAATCACCATCTTCGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG-ATAAGATTCACCATCTTCGA
6675 TCTG
129 TCTG
* *
6679 CTCGACTA-TGCTTAGGGTGACAGAATCTGAAATCTT-AACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
6742 TAGGACTGATGGC-TAAATCTGCTTCTCCACT-T-TTGGGAAGAT-AGAATCACCATC-TCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
6802 TG
131 TG
* *
6804 CTCGACTACTGC-TAGGGTGACAGAATCTGAAAATCTTCAACCTAACTCTCAC-ACTGGCTTTAG
1 CTCCACTACTGCTTAGGGTGACAGAATCTG-CAATCTTCAACCT-ACTC-CACTACT-GC-TTAG
*
6867 GGTGATAGGACTAATGGCTTAAATCTACTTCTCCCACTGTATTGGG-AGATAAGA-TCACTCATC
61 GGTGATAGGACTAATGGCTTAAATCTGCTTCT-CCACTGTATTGGGAAGATAAGATTCAC-CATC
6930 TTCG-TCTG
124 TTCGATCTG
* *
6938 CTCCACTACTGCTTA-GGTGACAGAATCTG-ATATCTTCAACCTACTCGACATACTACTTTAGGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCA-ATCTTCAACCTACTCCAC-TACTGC-TTAGGG
* * * ** *
7001 TGGTA-GACTAAT-GTTTCAATCCACTCTCTCCACTAGTA-TGGGAAGAT-AGAATC-CCATCTT
63 TGATAGGACTAATGGCTTAAATCTGCT-TCTCCACT-GTATTGGGAAGATAAGATTCACCATCTT
7061 CGATCTG
126 CGATCTG
* * * *
7068 CTCCACTACTGCTTAGGGTTAAAGAATCAT-AAATCTTCAATCTACTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * **
7132 ATAAGACTGATGGCTTAAATCTGCTTCTCCACTATATTCGGGAAGTAGAAAGATTCATTAT-TTC
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAG-A-TAAGATTCACCATCTTC
7196 GATC--
127 GATCTG
*
7200 CTATCACTACTGCTTAGGGTGACAGAATAACTGCAATCTT-AACCTACTCGCACTAC-GAC-TAG
1 CT-CCACTACTGCTTAGGGTGACAGAAT--CTGCAATCTTCAACCTACTC-CACTACTG-CTTAG
* *
7262 AGCT-ATATGGAGGCTAATGGCATTAAATCTTCTACTTCTCTCCCTTCCACTGTATTGGGAAGAT
61 -GGTGATA-GGA--CTAATGGC-TTAAA-----T-CTGCT-T--C-TCCACTGTATTGGGAAGAT
7326 AAGATTCACCATCTTCGATCTG
111 AAGATTCACCATCTTCGATCTG
7348 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA-CTGACTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* * * *
7412 ATTGGCCTAATGGCTTAATTCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
7477 CTG
130 CTG
* * * *
7480 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAGTCCGCTACTGGTTTGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
7545 TAGGACTACTGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTTACCATTTTCGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
7610 TG
131 TG
* *
7612 ATCCACTACTGCTTAGGGTGACAGAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
7677 TAGGACTAATGGCTTAAATATACATCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
7742 TG
131 TG
* ** * * *
7744 CTCCACTACTACTTATTGTGACAGAATCTGCAATCTTCAACCGACTCCACTGCTGTTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
7809 TTGGACTAACGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAGGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
7874 TG
131 TG
* *
7876 CTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCGACTACTGCTTAGGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-TG
** * * * *
7941 -TAGGACTAATGGCTTAAATCCACTACTCCACTGTTTTGGGAAGATAAGAATCACCGTCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
8005 CTG
130 CTG
*
8008 CTCCACTACTTCTTAGGGTGACA-AGATCTGCAATCTTCAA-CTGACTCCACTACTGCTTAGGGT
1 CTCCACTACTGCTTAGGGTGACAGA-ATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGT
* *
8071 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACCATCTTCGA
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
8136 TCTG
129 TCTG
* * * *
8140 CTCCACTACTGCTCAGGGTGACAGAATCTGAAATGTTCAACCTACTCCACTACTGCTTATGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
8205 TAGGACTAATGCCTTAAATCTACTTCCCCACTGTATTGGGAACATAGGATTCACCATCTTCGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
8270 TG
131 TG
* * *
8272 AC-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAAGTCCACTACTGGTTAGGGTT
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-T
** * *
8336 G-TAGGACTAATGGCTTAAATCCACTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGA
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
8400 TCTG
129 TCTG
*
8404 CTCCACTACTGCTCAGGGTGA-AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
8468 TAGGACTAACGGGTTAAATATTCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
8533 TG
131 TG
*
8535 CAT-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * *
8599 ATAGGACTGATGGCTTAAATTTGCTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTACGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
8664 CAG
130 CTG
* * * *
8667 CTCGACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAA-CTGACTCCAATACTGTTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* * *
8731 ATAGGACTAATGGCTTAAATCTCCTTCTCCATTGTATTGGGAAGATAGGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
8796 TTG
130 CTG
* *
8799 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCGACTACTGCTTAGGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-TG
** * * *
8864 -TAGGACTAATGGCTTAAATCCACTTCTCCACTGTCTTAGGAAGATAAGAATCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
8928 CTG
130 CTG
* * * *
8931 CTCCACTACTTCTTAGGGTGACAAAATCTGCAATCTTCAACCTACTCCAATACTGCTTAGGGCGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* ** *
8996 TTGGACTAATGGCTTAAATCTATTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
9061 TG
131 TG
* * * * *
9063 CTCCACTACTGCATAGGGTGACAGACTCTCCAATCTTTAACCTACTCCGCTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
9128 TAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGATATGATTCACAATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
9193 CG
131 TG
* * * * *
9195 CTCCACTACTTCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTTCAC-AGCTACTTAGGGAG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTA-CTGCTTAGGGTG
* * * * ** * * * * ** * *
9259 ATTGGGCTAATGGGTTAAATATGCAACTTCATTATCTTAAGAAGATATGATTCACCATCTTCAAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
9324 CCG
130 CTG
* * * * *
9327 CTCCACTAATGCTTAGCGTGACAGAATCTGCAATCTTCAACCTACTCAACTACTGCTTAAGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
9392 TAGGACTGAT-GCTTAAATCTACTTCTCCACTCTGTTGGGAAGATAAGAATCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
9456 TG
131 TG
* * *
9458 CTCGACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAA-CTGACTCCACTACTGCTTAGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* * * * * * * *
9522 ATAGGTCTAATGGCTGAAATCTACTTCTTCATTGTATTTGGAAGATGAGATTCACCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
9587 CTG
130 CTG
* * * * *
9590 CTCCACAACTGCTCAAGGTGACAGAATCTGAAATCTTCAACCTACTCCACTAATGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
9655 TAGGACTAATGGCTTAAATCTACTTCTCCGCTGTATTGGGAAGATAAGATTCTCAATCTTCTATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
9720 TG
131 TG
* * * *
9722 CTCCACTACTACTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * ** *
9787 TCGGACTAATGGCTTCAATCTGCTTCTCCACTATATTGGGAAGGTAAGATTTATTATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
9852 TG
131 TG
* * * *
9854 CCCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
9919 TAGGACTAATGGCTTAAATCTTCTTCTCCACTATTTTGGGAAGATAAGATTCACTATTTTCGGTC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
**
9984 CA
131 TG
* * * *
9986 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGAGAGC
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * *
10051 TTGGGCTAATGGCTTAAATCTGCTACTTCA-T-TATCCTGAGAAGATATGATTCACCATCTTCAA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT--TGGGAAGATAAGATTCACCATCTTCGA
*
10114 TCCG
129 TCTG
* * * *
10118 CTCCACTACTGCTTAGGGTGATAGTATCTCCAATCTTCAACCTACTCCACTACTGCTTAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
** * * * *
10183 TAGGACTGGTGGCTTCAATCTGCTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTACGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
10248 TG
131 TG
* * * *
10250 CTCGACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAA-CTGACTCCAATACTGTTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* * * *
10314 ATAGGACTAATGGCTGAAATCTCCTTCTCCATTGTATTGGGAAGATAGGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
10379 CTG
130 CTG
*
10382 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCGACTACTGCTTAGGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-TG
** * *
10447 -TAGGACTAATGGCTTAAATCCACTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
10511 CTG
130 CTG
* * * * * *
10514 CTCCACTACTTCTTAGGGTGAAAAAATCTGCAATCTTTAACCTACTCCACCACTGCTTAGGGCGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
10579 TTGGACTAATGGCTTAAATCT-ATCTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
66 TAGGACTAATGGCTTAAATCTGCT-TCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
10643 CTG
130 CTG
* * * * * *
10646 CTCCACTACTGCATAGGGTGATAGACTCTCCAATCTTTAACCTACTCCGCTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
10711 TAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
10776 CG
131 TG
* * * * * * *
10778 CTCCACTACTTCTTAGGGTGACAGAATCTTCAATCTTCAACCTATTTCACTGCTACTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* ** * * ** * * * * * * *
10843 TTGGGTTAATGGGTTAAATATGCAACTTCATTATCTTGAGAAGATATGATTCACCATCTTCAATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
10908 CG
131 TG
*
10910 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
10975 TAGGACTGATGGCTTAAATCTGCTTCTCCACTCTGATT-GGAAGATAAGAATCACCATCTTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGT-ATTGGGAAGATAAGATTCACCATCTTCGAT
11039 CTG
130 CTG
* * ** * *
11042 CTCGACTACTGCTTAGGGTGACATAATCTATAATCTTCCA-CTGACTCCACTACTGCTTAGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTG
* * * * * * * * *
11106 ATAGGTCTAATGGCTGAAATCTACATCTTCATTGTATTTGGAAGATGAGATTCACCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
11171 CTG
130 CTG
* * * *
11174 CTCCACAACTGCTCAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTAATGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
11239 TAGGACTAACGGCTTAAATCTACTTCTCCGCTGTATTGGGAAGATAGGATTCTCCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
11304 TG
131 TG
* * * *
11306 CCCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
11371 TAGGACTAATGGCTTAAATCTTCTTCTCCACTGTTTTGGGAAGATAAGATTCACTATTTTCGGTC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
**
11436 CA
131 TG
* * * *
11438 CTCCACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGAGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * * * *
11503 TTGGGA-TAATGGCTTAAATCTGCTACTTCATTATCTTGAGAAGATATGATTCACCATCTTCAAT
66 -TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
11567 CCG
130 CTG
* * * * * * *
11570 CTCTACTACTGCTTAAGGTGACAGTATCTCCAATCTTCAACCTACTCCACTGCTGCTTACGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
11635 TAGGACTGACGGCTTAAATCTGCTTCTCCACTATGTTGGGAAGATACGAATCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
11700 TG
131 TG
* * * *
11702 CTCCACTACTGCTTAGGGTTAAAGAATCAT-AAATCTTCAACCTACTCCACTACTGCTTAGGTTG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * * *
11766 ATAAGACTGATGGCTTAAATCTGCTTCTCCACTGTATTCGGAAGAAAAAGATTCATCATATTCGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG-ATAAGATTCACCATCTTCGA
*
11831 TCTA
129 TCTG
* * * * *
11835 ATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGAACCTACTCCAGTAGTGCTTAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
11900 TAGGACTAATGGCTTAAATCTACTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
11965 AG
131 TG
* *
11967 CTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
12032 TAGGACTAATAGCTTCAATCTGCTTCTCCACTGTATTTGGGAAGATGAGA-TCACCATATTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA-TTGGGAAGATAAGATTCACCATCTTCGAT
*
12096 ATG
130 CTG
* *
12099 CTCCACTACTGCTCAGGGTGACAGAATTTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
** * *
12164 TAGGACTAATGGCTTAAATCTATTTCTCCACTGTATTGGGAAGATAAGATTCGCTATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
12229 TG
131 TG
* * *
12231 CTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTCCTTAGGGTGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * **
12296 TAGGACTAATTGCTTAAATCTGTTTTTCCACTCTCTTGAAAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
12361 TG
131 TG
* * * * * * *
12363 TTCCACTACTTCCTAGGGTGA-AAAATCTGCAATCTTCGACCGACTCCACGACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * ** * *
12427 TTGGACTAATGGCTTAAATATGCTTCTTCGTTATTTTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
12492 TG
131 TG
* *
12494 CTCCACTACTGCTTAAGGTGACAGAATCTGTAATCTTCAACCTACTCCACTA-TAGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTG
*
12558 ATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
12623 TTG
130 CTG
12626 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * *
12691 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGAAAGATAAGATTCACCAACTTCTATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
12756 TG
131 TG
* * * * * * *
12758 ATCCACTACTGCCT-GGGTGACAGAATCGGAAATCTTCAACCAACTCTACTAGTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
12822 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
12887 TG
131 TG
** ** * * * * * * * *
12889 CTCCACTACTAG-TTAGTATGGTAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGG
1 CTCCACTACT-GCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
** * ** * * * * * * * * **
12949 GAACATAGGATTCACCAT--CTTCGATTTGCTCCACTACTCCT-TAGGG-AGA-AATAATCATAA
62 G-TGATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCA-CC
* * *
13009 ATCTTCAACCTA
121 ATCTTCGATCTG
* * * * *
13021 CTCCACTACTACTTAGGGTGATAGTA-CTG--ATCGCTTAAATCTGCTTCTCCACTACTGCTTAG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCACTACTGCTTAG
* * * * *
13083 GGTGATAGGACTACTGGCTTAAATCTACTTCTCCACTTTATTGGTAAGATAAGATTCACTATCTT
61 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTT
13148 CGATCTG
126 CGATCTG
* * * * * *
13155 CTCCACTACTTCGTAGGGTGACAGAATCTGCAATCTTCAACCTAGTCCACCACTCCTTAGGGTGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
13220 TAGGACTAATGGCTTAAATCTGCTTCTACACTCTCTTGAGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
13285 TG
131 TG
** * * * *
13287 CTCCACTACTTATTAGGGTGA-AAAATCTGTAATCTTCGACCGACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
13351 TTGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGAGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
13416 TG
131 TG
* * * * * *
13418 CTCCACTACTGCTTAGGCTTAGAGAATCTACAATCTTTAACCTACTCCGCTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
13483 TGGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCCATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
13548 TG
131 TG
* *
13550 CAT-CACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAAACCGACTCCACTACTGCTTAGGGT
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC-AACCTACTCCACTACTGCTTAGGGT
* *
13614 GATAGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAA-ACTAAGATTCATCATCTTCG
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTCG
*
13678 ATCTA
128 ATCTG
* * *
13683 TTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCGACTACTGCTTGGGGTGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT-G
* * *
13748 A-AGGACTAAAGGCTTAGATCTGCTTCTCCACTGTATTGGGAACATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
13812 CTG
130 CTG
* *
13815 CTCCACTACTGCTTAGGGTGAAAGAATCAT-AAATCTTCAACCTACTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * *
13879 ATTGGACTGATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCATCATATTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
13944 TTG
130 CTG
*
13947 CTCCACTACTGCTTAGGGTGACAGAATCTGC-ATCTTCAACCTACTCCACTACTACTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
14011 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
14076 TG
131 TG
*
14078 CTCCGCTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
14143 TAGGACTAATGGCGTAAATCTGCTTCTCAACCGTGTTGGGAAGATAAGATTCACCAACTTCTATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
14208 TG
131 TG
* * * * *
14210 AC-CCACTACTGCCTAGGGTCATAGAATCGGCAATCTTCAACCAACTCCACTACTGCTTAGGGTG
1 -CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
14274 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
14339 CTG
130 CTG
** * * * *
14342 CTCCACTACTGCTTAGGGTGGTAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTA-T-ATT-G
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCACTACTGCTTAG
** * *** ** * * * *** * * * * *****
14401 GGAACATAGGATTAACCATCTTCGATTTACTCCAGTACTGCT-TAGGG-TGATAGGACT-GGTGG
61 GG-TGATAGGACTAA-TGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT
**
14463 CTTAAATCTG
123 CTTCGATCTG
* * * * * * * * * *
14473 TTTCTCCACTGTATTAGGAAG-GTA-AGATTCAT-C-ATATTCGATCTGCTCCACTACTGCTTAG
1 CTCCACTACTG-CTTAGG--GTG-ACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAG
* * * * * * * * *
14534 GGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCAATACTACTTAGGG-TGATAGGACT-A-
61 GGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACT-GTA-TT-GGGAAGATAAGATTCAC
** *
14591 -ATGGCTTAAATCTA
120 CAT--CTTCGATCTG
* * * * * * * * * * * * * *
14605 CTTCTCCATTG-TATTGGGATCATAAGATTC-ACCATCTTCGATCTGCTCCACAACTGCTTAGGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * * * * * * * * * * * *
14668 TGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG-TGGTAGGACT-A--ATG
63 TGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT-
**
14726 GCTTAAATCTG
123 -CTTCGATCTG
* * * * * * * ** *
14737 CTTCTCCACTG-TATTGGG-AACATAGGAT-T-CACCATCTTCGATTTGCTCCACTACTGCTTAG
1 CTCCACTACTGCT-TAGGGTGAC--AGAATCTGCA--ATCTTCAACCTACTCCACTACTGCTTAG
* * * * * * * * * * * * * * *
14798 GGTGAAAGAATCAGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG-TGATAGGACTGATC-
61 GGTGATAGGA-C--TAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCA
* **
14858 GCTTAAATCTG
122 TCTTCGATCTG
* * * * * * * * * *
14869 CTTCTCAACTG-TATTGGGAAGGTA-AGATTCAT-C-ATATTCGATCC-GCTCCACTACTGTTTA
1 CTCCACTACTGCT-TAGGG--TG-ACAGAATC-TGCAATCTTC-AACCTACTCCACTACTGCTTA
* * * * * * * * * * * * * *
14929 -GGTGACAGAATCTACAAT--CTTCAACCTAC-TCGACTACTGCT-TAGGG-TGGTAGGACTAAT
60 GGGTGATAGGA-CT--AATGGCTTAAATCTGCTTC-TCCACTG-TATTGGGAAGATAAGATTCAC
** **
14988 GGT-TTAAATCTG
120 CATCTTCGATCTG
* * * * * * * * * * * * * * *
15000 CTTCTCCATTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCTGCTCCACTACTACTTAGGT
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * * * * * * * * * *
15063 TGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TTGGG-TGATAGGACT-A--ATG
63 TGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT-
** *
15121 GCTTAAATCTA
123 -CTTCGATCTG
* * * * * * * * * *
15132 CTTCTCCACTGTATTAGGAAG-GTA-AGATTC-GCTATCTTCGATCTGCTCCACTACTGCTTAAG
1 CTCCACTACTG-CTTAGG--GTG-ACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
* * * * * * * * * * * * *
15194 GTGAAAGAATCTGCAAT--CTTCAACCTACTCCACCACTCCT-TAGGG-TGGTAGGACT-A--AT
62 GTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCA-
**
15252 TGCTTAAATCTG
122 T-CTTCGATCTG
** * * * * * * ** * *
15264 CTTCTGCACT-CT-CTTGAGAAT-ATAAGATTC-ACCATCTTCGATCTGTTCCACTACTTCCTAG
1 C-TC--CACTACTGCTT-AGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG
** ** * * * * * ** *
15325 GGTGA-AAAATCTGCAAT--CTTCGA-CCGACTCCACTACTGCT-TAGGG-AGATTGGACT-A--
61 GGTGATAGGA-CT--AATGGCTTAAATCTG-CTTCTCCACTG-TATTGGGAAGATAAGATTCACC
**
15381 ATGGCTTAAATCTG
121 AT--CTTCGATCTG
* * * * * * * * * * * *
15395 CTTCTCCACTGTTTTGGGAAGATA-AGAT-TAACCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTCCACTACTGCTTAGGG-TGACAGA-ATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * * * * * * * * * * * *
15458 TGACAGAATCTGCAAT--CTTCAACCTACTGCACTACAGCT-TAGGG-TGATAGGACT-A--ATG
63 TGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT-
** *
15516 GCTTAAATCTA
123 -CTTCGATCTG
* * * * * * * * * * * * *
15527 CTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCTATCTGCTCCACTATTGCTTAGGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
** * * * * * * * * ** * *
15590 CAACAGAATCTGCAAT--CTTCAACCTAC-TCTACTACAGCTA-AGGG-TCATAGGACT-A--AT
63 TGATAGGA-CT--AATGGCTTAAATCTGCTTCT-CCACTG-TATTGGGAAGATAAGATTCACCAT
** *
15647 GGCTTAAATCTA
123 --CTTCGATCTG
* * * * * * * * * *
15659 CTTCTCAACCGTG-TT-GGGAAGATA-AGATTTACCAA-CTTCTATCTGA-TCCACTACTGCCTA
1 CTCCACTA-C-TGCTTAGGG-TGACAGA-ATCT-GCAATCTTCAACCT-ACTCCACTACTGCTTA
* * * * * * * *
15719 GGGTGACAGAATCGGGAAT--CTTCAACATACT-CTACTACAACT-TA--GGG-TGATAGGACT-
60 GGGTGATAGGA-C--TAATGGCTT-AA-AT-CTGCTTCT-CCACTGTATTGGGAAGATAAGATTC
** *
15776 A--ATGGCTTAAATCTA
118 ACCAT--CTTCGATCTG
* * * * * * * * * * * * *
15791 CTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTCCGATCTGCTCCACTACTGCTTAGGG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * * * *
15854 TGGTAGGACTACTAGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACCATCTTCG
63 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
*
15919 ATTTG
128 ATCTG
* *
15924 CTCCACTACTGCTTAGGGTGAAAGAATCAT-AAATCTTCAACCTACTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * * * *
15988 ATAGGACTGATTGCTTAAATCTGCTTCTCAACTGTATTGGGAAGGTAAGATTCATCATATTCAAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
16053 CTG
130 CTG
16056 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
16121 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGAATCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
16186 TG
131 TG
* * * * * *
16188 CTCCTCTACTTCTTAGGGTGACAAAATCTTCAATCTTTAACCGACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
16253 TTGGACTAATGGCCTAAATCTGCTTC-CCGACTGTATTGGGAAGATAAGAATCACCATATTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCC-ACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
16317 CTG
130 CTG
* * * * * *
16320 CTCCACAACTACTGAGGGTGACAGAATCTGAAATCTTCAACCTACTCCGCTACTGCTTAGGGTAA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
16385 CAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
16450 TG
131 TG
* * * * *
16452 CTCCACTACTACTTAGGGTGACTGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGAGAGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * * * * * * *
16517 TTGGGCTAATGGCTTATATCTGCTACTTCATTATCTTGAGAAGATATGATTCACTACTGCTTAG-
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA-T-CTTCGA
**
16581 GGTG
129 TCTG
* * * ** * * * * *
16585 --ACAGTA-T-CTCCAATGT-TC--AA-C--CTA-C-TCCA-CTACTGC-TTAC-GCTGATAGGA
1 CTCCACTACTGCT-TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT--TAGG-
* * * ** * * * * ** ** *
16635 CTGAT-GG-CTTAAATCTGCTT--CTCCACTGTGT---TTGGA-AGATAAGAATCACCA-TCTTC
62 GTGATAGGAC-T-AAT-GGCTTAAATCTGCT-TCTCCACTGTATTGGGAAG-AT-AAGATTC-AC
* *
16691 GATCTGCTCGA-CTA
120 CATCT--TCGATCTG
* * * * * ** * * * * * * * * *
16705 CTGC-TTA-GGGTGACAG-AATCTGTAATCT-TAAACTGACTCCACC-ACTGC-TTAGGGTG-AT
1 CTCCACTACTGCTTAGGGTGA-CAG-AATCTGCAATCT---TCAACCTACTCCACTA--CTGCTT
* * * ** * ** * * ** ** *
16763 AGGACTAAT-GG-CTGAAATCTGCTTCTCCAT-TG-TATTTGGA-AG-A-TGAGATTCACCATAT
59 AGG-GTGATAGGACT--AAT-GGC-T-TAAATCTGCT-TCTCCACTGTATTGGGA-AGATAAGAT
* *
16821 T--CGATC-T-G-T-TC
116 TCACCATCTTCGATCTG
* * * ** * *
16832 CACTACTGCTCA---GGGTGACAGAATCTGAAATCCTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
16894 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACTATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
16959 TG
131 TG
* * *
16961 CTCCACTACTGCTTAGGGTGACAAAATCTG-ATATCTTCAACCTACTCGACTACTACTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCA-ATCTTCAACCTACTCCACTACTGCTTAGGGTG
* ** * *
17025 GTAGGACTAATGGCTTAAATCCACTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
17090 CTG
130 CTG
* * *
17093 CTCCACTACTGCTTAGGGTTAAAGAATCAT-AAATCTTCAACCTACTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * * * * *
17157 ATAAGACTGATGGCTTAAATCTACTTCTTCACTGTATTCGGAAGAAAAAGATTCATCATATTCGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG-ATAAGATTCACCATCTTCGA
*
17222 TCTA
129 TCTG
* * * *
17226 ATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGAACCTACTCCACTAGTGCTTAGGCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
17291 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
17356 TG
131 TG
* *
17358 CTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * * *
17423 TAGGACTAATAGCTTCAATCTGCTTCTCCATTGTATTTGGAAGATGAGATCCACCATATTCGATA
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
17488 TG
131 TG
* * *
17490 CTCCACTACTGCTCAGGGTGACAGAATTTGCAATCGTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* ** * * *
17555 TCGGACTAATGGCTTAAATCTATTTCTCCATTGTATTGGGAAGATAAGATTCGCTATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
17620 TG
131 TG
* * *
17622 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACACCACTACTCCTTAGGGTGG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * ** *
17687 TAGGACTAATTGCTTAAATCTGCTTTTCCACTCTCTTGAAAAGATAAGATTCACCATCTTTGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
*
17752 TA
131 TG
* * * * * * *
17754 TTCCACTACTTCCTAGGGTGA-AAAATCTGCAATCTTCGACCGACTCCACTACTTCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * *
17818 TTGGACTAATGGCTTAAATATGCTTCTCCGCTATTTTGGGAAGATAAGATTCAACATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
17883 TG
131 TG
* * *
17885 CTTCACTACTGCTTAAGGTGACAGAATCTGTAATCTTCAACCTACTCCACTA-TAGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTG
*
17949 ATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
18014 TTG
130 CTG
* * * *
18017 CTTCACTACTACTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCACTAGTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * * * *
18082 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGAAAGATAAGATTCA-CAACTTCTATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
18146 TG
131 TG
* * * * * * *
18148 ATCCACTACTG-TCTGGGGTGACAGAATCGGAAATCTTCAACCAACTCTACTAGTGCTTAGGGTG
1 CTCCACTACTGCT-TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
*
18212 ATAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
18277 CTG
130 CTG
18280 CTCCACTACT
1 CTCCACTACT
18290 AGTTAGCATG
Statistics
Matches: 12265, Mismatches: 1760, Indels: 1203
0.81 0.12 0.08
Matches are distributed among these distances:
118 7 0.00
119 9 0.00
120 15 0.00
121 60 0.00
122 32 0.00
123 47 0.00
124 40 0.00
125 109 0.01
126 73 0.01
127 187 0.02
128 230 0.02
129 380 0.03
130 388 0.03
131 1593 0.13
132 7212 0.59
133 850 0.07
134 344 0.03
135 213 0.02
136 146 0.01
137 106 0.01
138 51 0.00
139 34 0.00
140 18 0.00
141 7 0.00
142 4 0.00
143 9 0.00
144 4 0.00
145 34 0.00
146 20 0.00
147 31 0.00
148 12 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
TG
Found at i:12015 original size:44 final size:44
Alignment explanation
Indices: 11830--12294 Score: 149
Period size: 44 Copynumber: 10.6 Consensus size: 44
11820 ATCATATTCG
* * *
11830 ATCTAATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
* * * * * * *
11874 ACCTACTCCAGTAGTGCTTAGGCTGATAGGA-CT--AATGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAAT--CTTCA
* * * * * *
11917 ATCTACTTCTCCACTA-T-ATT-GGGAAGATAAGATTC-ACCATCTTCG
1 ATCTA---CTCCACTACTGCTTAGGG-TGA-AAGAATCTGCAATCTTCA
11962 ATC-AGCTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
1 ATCTA-CTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
* * * *
12006 ACCTACTCCACTACTGCATAGGGTGATAGGA-CT--AATAGCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAAT--CTTCA
* * * * ** * * * *
12049 ATCTGCTTCTCCACTG-TATTTGG-GAAGATGAGATC-ACCATATTCG
1 ATCTACTCCACTACTGCT-TAGGGTGAA-A-GA-ATCTGCAATCTTCA
* * * * *
12094 ATATGCTCCACTACTGCTCAGGGTGACAGAATTTGCAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
* * * *
12138 ACCTACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAAT--CTTCA
* * * * * * * * *
12181 ATCTATTTCTCCACTG-TATTGGGAAGATAAGATTC-GCTATCTTCG
1 ATCTACTCCACTACTGCT-TAGGG-TGA-AAGAATCTGCAATCTTCA
* * *
12226 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
* *
12270 ACCTACTCCACTACTCCTTAGGGTG
1 ATCTACTCCACTACTGCTTAGGGTG
12295 GTAGGACTAA
Statistics
Matches: 292, Mismatches: 92, Indels: 74
0.64 0.20 0.16
Matches are distributed among these distances:
41 9 0.03
42 11 0.04
43 68 0.23
44 132 0.45
45 52 0.18
46 14 0.05
47 6 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTTCA
Found at i:12918 original size:88 final size:88
Alignment explanation
Indices: 12822--12986 Score: 294
Period size: 88 Copynumber: 1.9 Consensus size: 88
12812 CTTAGGGTGA
*
12822 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATCTTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAACATAAGATTCACCATCTTCGATC
12887 TGCTCCACTACTAGTTAGTATGG
66 TGCTCCACTACTAGTTAGTATGG
* * *
12910 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACCATCTTCGATT
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAACATAAGATTCACCATCTTCGATC
12975 TGCTCCACTACT
66 TGCTCCACTACT
12987 CCTTAGGGAG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 73 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (88 bp):
TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAACATAAGATTCACCATCTTCGATC
TGCTCCACTACTAGTTAGTATGG
Found at i:13074 original size:46 final size:46
Alignment explanation
Indices: 13021--13119 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 46
13011 CTTCAACCTA
* *
13021 CTCCACTACTACTTAGGGTGATAGTACTGA-TCGCTTAAATCTGCTT
1 CTCCACTACTACTTAGGGTGATAGGACT-ACTCGCTTAAATCTACTT
* *
13067 CTCCACTACTGCTTAGGGTGATAGGACTACTGGCTTAAATCTACTT
1 CTCCACTACTACTTAGGGTGATAGGACTACTCGCTTAAATCTACTT
13113 CTCCACT
1 CTCCACT
13120 TTATTGGTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (46 bp):
CTCCACTACTACTTAGGGTGATAGGACTACTCGCTTAAATCTACTT
Found at i:13172 original size:88 final size:88
Alignment explanation
Indices: 12814--13175 Score: 285
Period size: 88 Copynumber: 4.1 Consensus size: 88
12804 TACTAGTGCT
* *
12814 TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCAT
1 TAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCAT
*
12879 CTTCGATCTGCTCCACTAC-TAG
66 CTTCGATCTGCTCCACTACTTCG
** * * * *
12901 TTAGTATGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACCA
1 -TAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* * *
12966 TCTTCGATTTGCTCCACTACTCCT
65 TCTTCGATCTGCTCCACTACTTCG
* * * * *
12990 TAGGGAGA-A--A-TAAT--CATAAATCTTCAACCTACTCCACTACTACTTAGGG-TGAT-AGTA
1 TAGGGTGATAGGACTAATGGCTTAAATC-T--A-CTTCTCCACT-GTA-TT-GGGAAGATAAG-A
* * * * ** * *
13047 CTGATC-GCTTAAATCTGCTTCTCCACTACTGCT
58 TTCACCATCTTCGATCTG---CTCCACTACTTCG
* * * *
13080 TAGGGTGATAGGACTACTGGCTTAAATCTACTTCTCCACTTTATTGGTAAGATAAGATTCACTAT
1 TAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCAT
13145 CTTCGATCTGCTCCACTACTTCG
66 CTTCGATCTGCTCCACTACTTCG
13168 TAGGGTGA
1 TAGGGTGA
13176 CAGAATCTGC
Statistics
Matches: 208, Mismatches: 45, Indels: 42
0.71 0.15 0.14
Matches are distributed among these distances:
82 7 0.03
83 1 0.00
84 4 0.02
85 1 0.00
86 9 0.04
87 11 0.05
88 108 0.52
89 5 0.02
90 27 0.13
91 13 0.06
92 9 0.04
93 2 0.01
94 3 0.01
95 1 0.00
96 7 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (88 bp):
TAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCAT
CTTCGATCTGCTCCACTACTTCG
Found at i:13192 original size:178 final size:178
Alignment explanation
Indices: 12910--13251 Score: 470
Period size: 178 Copynumber: 1.9 Consensus size: 178
12900 GTTAGTATGG
* * *
12910 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACCATCTTCGATT
1 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACCATCTTCGATC
* * *
12975 TGCTCCACTACTCCTTAGGGAGAAATAATCATAAATCTTCAACCTACTCCACTACTACTTAGGGT
66 TGCTCCACTACTCCGTAGGGAGAAAGAATCATAAATCTTCAACCTACTCCACCACTACTTAGGGT
* * *
13040 GATAGTACTGATCGCTTAAATCTGCTTCTCCACTACTGCTTAGGGTGA
131 GATAGGACTAATCGCTTAAATCTGCTTCTACACTACTGCTTAGGGTGA
* * * * *
13088 TAGGACTACTGGCTTAAATCTACTTCTCCACTTTATTGGTAAGATAAGATTCACTATCTTCGATC
1 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACCATCTTCGATC
* * * * * *
13153 TGCTCCACTACTTCGTAGGGTGACAGAATC-TGCAATCTTCAACCTAGTCCACCACTCCTTAGGG
66 TGCTCCACTACTCCGTAGGGAGAAAGAATCAT-AAATCTTCAACCTACTCCACCACTACTTAGGG
* *
13217 TGGTAGGACTAATGGCTTAAATCTGCTTCTACACT
130 TGATAGGACTAATCGCTTAAATCTGCTTCTACACT
13252 CTCTTGAGAA
Statistics
Matches: 141, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
177 1 0.01
178 140 0.99
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (178 bp):
TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACCATCTTCGATC
TGCTCCACTACTCCGTAGGGAGAAAGAATCATAAATCTTCAACCTACTCCACCACTACTTAGGGT
GATAGGACTAATCGCTTAAATCTGCTTCTACACTACTGCTTAGGGTGA
Found at i:14132 original size:44 final size:44
Alignment explanation
Indices: 13947--14142 Score: 143
Period size: 43 Copynumber: 4.5 Consensus size: 44
13937 ATTCGATTTG
13947 CTCCACTACTGCTTAGGGTGACAGAATCTGC-ATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * *
13990 CTCCACTACTACTTAGGGTGATAGGA-CT--AATGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTA
* * * * * * * * * * * *
14033 CTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTA
*
14078 CTCCGCTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
14122 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
14143 TAGGACTAAT
Statistics
Matches: 111, Mismatches: 31, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 47 0.42
44 34 0.31
45 21 0.19
46 2 0.02
47 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:14386 original size:43 final size:43
Alignment explanation
Indices: 14254--14386 Score: 110
Period size: 43 Copynumber: 3.0 Consensus size: 43
14244 CTTCAACCAA
14254 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
* * * * * * * **
14297 CTTCTCCACTG-TATTGGGAAGATAAGATTCACCAT--CTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGATAGGACT-A--ATGGCTTAAATCTG
*
14342 CTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
14385 CT
1 CT
14387 TCTCCACTAT
Statistics
Matches: 63, Mismatches: 19, Indels: 16
0.64 0.19 0.16
Matches are distributed among these distances:
41 2 0.03
42 1 0.02
43 23 0.37
44 13 0.21
45 21 0.33
46 1 0.02
47 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG
Found at i:14386 original size:220 final size:221
Alignment explanation
Indices: 14122--14802 Score: 703
Period size: 220 Copynumber: 3.1 Consensus size: 221
14112 CTTCAACCTA
* * * * *
14122 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCGTAAATCTGCTTCTCAACCGTGTTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACA
* * * *
14187 TAAGATTCACCAACTTCTATCTGAC-CCACTACTGCCTAGGGTCATAGAATCGGCAATCTTCAAC
66 TAAGATTCACCATCTTCGATCTGACTCCACTACTGCTTAGGGTGATAGAATCGGCAATCTTCAAC
* *
14251 CAACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
131 CTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
14316 AGATAAGATTCACCATCTTCGATCTG
196 AGATAAGATTCACCATCTTCGATCTG
* *
14342 CTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAACA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACA
* * * * * *** *
14407 TAGGATTAACCATCTTCGAT-TTACTCCAGTACTGCTTAGGGTGATAGGA-CTGG-TGGCTTAAA
66 TAAGATTCACCATCTTCGATCTGACTCCACTACTGCTTAGGGTGATAGAATC-GGCAATCTTCAA
* ** * * * * ** * * * *** ** * * * *
14469 TCTGTTTCTCCACTGTATTAGGAAGGTAAGATTCATCATATTCGATCTGCTCCACTACTGCT-TA
130 CCTACTCCACTACTG-CTTAGGGTGGTAGGACTAAT-GGCTTAAATCTGCTTCTCCACTG-TATT
* * * * * * * *
14533 GGG-TGA-CAGAATCTGCAATCTTCAACCTA
192 GGGAAGATAAGATTC-ACCATCTTCGATCTG
* * * * *
14562 CTCCAATACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCATTGTATTGGGATCA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACA
* * *
14627 TAAGATTCACCATCTTCGATCTG-CTCCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
66 TAAGATTCACCATCTTCGATCTGACTCCACTACTGCTTAGGGTGATAGAATCGGCAATCTTCAAC
14691 CTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
131 CTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
* * *
14756 ACATAGGATTCACCATCTTCGATTTG
196 AGATAAGATTCACCATCTTCGATCTG
14782 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
14803 AAGAATCAGC
Statistics
Matches: 345, Mismatches: 104, Indels: 24
0.73 0.22 0.05
Matches are distributed among these distances:
218 1 0.00
219 41 0.12
220 263 0.76
221 39 0.11
222 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (221 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACA
TAAGATTCACCATCTTCGATCTGACTCCACTACTGCTTAGGGTGATAGAATCGGCAATCTTCAAC
CTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
AGATAAGATTCACCATCTTCGATCTG
Found at i:14391 original size:88 final size:88
Alignment explanation
Indices: 14254--14538 Score: 435
Period size: 88 Copynumber: 3.2 Consensus size: 88
14244 CTTCAACCAA
14254 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
14319 TAAGATTCACCATCTTCGATCTG
66 TAAGATTCACCATCTTCGATCTG
* * *
14342 CTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAACA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
14407 TAGGATTAACCATCTTCGATTTA
66 TAAGATTCACCATCTTCGATCTG
* ** * * *
14430 CTCCAGTACTGCTTAGGGTGATAGGACTGGTGGCTTAAATCTGTTTCTCCACTGTATTAGGAAGG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
14495 TAAGATTCATCATATTCGATCTG
66 TAAGATTCACCATCTTCGATCTG
14518 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
14539 CAGAATCTGC
Statistics
Matches: 174, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 174 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCTG
Found at i:14705 original size:44 final size:44
Alignment explanation
Indices: 14518--14713 Score: 132
Period size: 44 Copynumber: 4.5 Consensus size: 44
14508 ATTCGATCTG
14518 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * *
14562 CTCCAATACTACTTAGGGTGATAGGA-CT--AATGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTA
* * * * * * * * * * * * *
14605 CTTCTCCATTG-TATTGGGATCATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTA
*
14650 CTCCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
14694 CTCCACTACTGCTTAGGGTG
1 CTCCACTACTGCTTAGGGTG
14714 GTAGGACTAA
Statistics
Matches: 107, Mismatches: 35, Indels: 20
0.66 0.22 0.12
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 24 0.22
44 55 0.51
45 20 0.19
46 2 0.02
47 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:15264 original size:395 final size:396
Alignment explanation
Indices: 14428--15855 Score: 2040
Period size: 395 Copynumber: 3.6 Consensus size: 396
14418 ATCTTCGATT
* ** * * *
14428 TACTCCAGTACTGCTTAGGGTGATAGGACTGGTGGCTTAAATCTGTTTCTCCACTGTATTAGGAA
1 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACTGTATTGGGAA
* * *
14493 GGTAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
66 GATAAGATTCACCATATTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAATCTTCAA
* *
14558 CCTACTCCAATACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCATTGTATTGGG
131 CCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGG
** *
14623 ATCATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTTAGGGTGACAGAATCTGCAATCTTC
196 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
* *
14688 AACCTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
261 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTG
* * * * *
14753 GGAACATAGGATTCACCATCTTCGATTTGCTCCACTACTGCTTAGGGTGAAAGAATCAGCAATCT
326 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGAAAGAATCTGCAATCT
14818 TCAACC
391 TCAACC
* *
14824 TACTCCACTACTGCTTAGGGTGATAGGACTGATCGCTTAAATCTGCTTCTCAACTGTATTGGGAA
1 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACTGTATTGGGAA
* * * ** *
14889 GGTAAGATTCATCATATTCGATCCGCTCCACTACTGTTTA-GGTGACAGAATCTACAATCTTCAA
66 GATAAGATTCACCATATTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAATCTTCAA
* * * * * *
14953 CCTACTCGACTACTGCTTAGGGTGGTAGGACTAATGGTTTAAATCTGCTTCTCCATTGTATTGGG
131 CCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGG
* *
15018 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGTTGACAGAATCTGCAATCTTC
196 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
* *
15083 AACCTACTCCACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTA
261 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTG
* * *
15148 GGAAGGTAAGATTCGCTATCTTCGATCTGCTCCACTACTGCTTAAGGTGAAAGAATCTGCAATCT
326 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGAAAGAATCTGCAATCT
15213 TCAACC
391 TCAACC
* * * * * * *
15219 TACTCCACCACTCCTTAGGGTGGTAGGACTAATTGCTTAAATCTGCTTCTGC-ACTCTCTTGAGA
1 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT-CAACTGTATTGGGA
* * * * * *
15283 ATATAAGATTCACCATCTTCGATCTGTTCCACTACTTCCTAGGGTGA-AAAATCTGCAATCTTCG
65 AGATAAGATTCACCATATTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAATCTTCA
* * * * * *
15347 ACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTTTTGG
130 ACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
*
15412 GAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
195 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* *
15477 CAACCTACTGCACTACAGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATT
260 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATT
* *
15542 GGGAAGATAAGATTCACCATCTTCTATCTGCTCCACTATTGCTT-AGG-GCAACAGAATCTGCAA
325 GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTG-AA-AGAATCTGCAA
15605 TCTTCAACC
388 TCTTCAACC
* * * * * * *
15614 TACTCTACTACAGCTAAGGGTCATAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGGAA
1 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACTGTATTGGGAA
* * * * *
15679 GATAAGATTTACCA-ACTTCTATCTGATCCACTACTGCCTAGGGTGACAGAATCGGGAATCTTCA
66 GATAAGATTCACCATA-TTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAATCTTCA
* * *
15743 ACATACTCTACTACAACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
130 ACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGG
*
15808 GAAGATAAGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGTG
195 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
15856 GTAGGACTAC
Statistics
Matches: 919, Mismatches: 106, Indels: 14
0.88 0.10 0.01
Matches are distributed among these distances:
393 1 0.00
394 6 0.01
395 694 0.76
396 218 0.24
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (396 bp):
TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACTGTATTGGGAA
GATAAGATTCACCATATTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAATCTTCAA
CCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGG
AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTG
GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGAAAGAATCTGCAATCT
TCAACC
Found at i:15462 original size:527 final size:527
Alignment explanation
Indices: 14436--15855 Score: 2070
Period size: 527 Copynumber: 2.7 Consensus size: 527
14426 TTTACTCCAG
** * * *
14436 TACTGCTTAGGGTGATAGGACTGGTGGCTTAAATCTGTTTCTCCACTGTATTAGGAAGGTAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* *
14501 TCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
* * * **
14566 AATACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCATTGTATTGGGATCATAAG
131 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAG
*
14631 ATTCACCATCTTCGATCTGCTCCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
196 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
*
14696 CCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATA
261 CCACTACTACTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATA
* * *
14761 GGATTCACCATCTTCGATTTGCTCCACTACTGCTTAGGGTGAAAGAATCAGCAATCTTCAACCTA
326 AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCAGCAATCTTCAACCGA
* * *
14826 CTCCACTACTGCTTAGGGTGATAGGACTGATCGCTTAAATCTGCTTCTCAACTGTATTGGGAAGG
391 CTCCACTACTGCTTAGGGAGATAGGACTAATCGCTTAAATCTGCTTCTCAACTGTATTGGGAAGA
* * *
14891 TAAGATTCATCATATTCGATCCGCTCCACTACTGTTTAGGTGACAGAATCTACAATCTTCAACCT
456 TAAGATTAACCATATTCGATCCGCTCCACTACTGCTTAGGTGACAGAATCTACAATCTTCAACCT
14956 ACT-CGAC
521 ACTGC-AC
* * *
14963 TACTGCTTAGGGTGGTAGGACTAATGGTTTAAATCTGCTTCTCCATTGTATTGGGAAGATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* *
15028 TCACCATCTTCGATCTGCTCCACTACTACTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
* * *
15093 ACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTAGGAAGGTAAG
131 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAG
* * * *
15158 ATTCGCTATCTTCGATCTGCTCCACTACTGCTTAAGGTGAAAGAATCTGCAATCTTCAACCTACT
196 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
* * * * * * * *
15223 CCACCACTCCTTAGGGTGGTAGGACTAATTGCTTAAATCTGCTTCTGCACTCTCTTGAGAATATA
261 CCACTACTACTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATA
* * * * *
15288 AGATTCACCATCTTCGATCTGTTCCACTACTTCCTAGGGTGAAA-AATCTGCAATCTTCGACCGA
326 AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCAGCAATCTTCAACCGA
* * * *
15352 CTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTTTTGGGAAGA
391 CTCCACTACTGCTTAGGGAGATAGGACTAATCGCTTAAATCTGCTTCTCAACTGTATTGGGAAGA
* * *
15417 TAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
456 TAAGATTAACCATATTCGATCCGCTCCACTACTGCTTA-GGTGACAGAATCTACAATCTTCAACC
15482 TACTGCAC
520 TACTGCAC
* *
15490 TACAGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * ** *
15555 TCACCATCTTCTATCTGCTCCACTATTGCTTAGGGCAACAGAATCTGCAATCTTCAACCTACTCT
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
* * * * * *
15620 ACTACAGCTAAGGGTCATAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGGAAGATAAG
131 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAG
* * * * * * * *
15685 ATTTACCAACTTCTATCTGATCCACTACTGCCTAGGGTGACAGAATCGGGAATCTTCAACATACT
196 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
* * * * *
15750 CTACTACAACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATA
261 CCACTACTACTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATA
*
15815 AGATTCACCATCTCCGATCTGCTCCACTACTGCTTAGGGTG
326 AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
15856 GTAGGACTAC
Statistics
Matches: 788, Mismatches: 103, Indels: 4
0.88 0.12 0.00
Matches are distributed among these distances:
526 108 0.14
527 679 0.86
528 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (527 bp):
TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAG
ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
CCACTACTACTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAACATA
AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCAGCAATCTTCAACCGA
CTCCACTACTGCTTAGGGAGATAGGACTAATCGCTTAAATCTGCTTCTCAACTGTATTGGGAAGA
TAAGATTAACCATATTCGATCCGCTCCACTACTGCTTAGGTGACAGAATCTACAATCTTCAACCT
ACTGCAC
Found at i:15908 original size:88 final size:88
Alignment explanation
Indices: 15759--15944 Score: 300
Period size: 88 Copynumber: 2.1 Consensus size: 88
15749 TCTACTACAA
* *
15759 CTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACC
1 CTTAGGGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACC
15824 ATCTCCGATCTGCTCCACTACTG
66 ATCTCCGATCTGCTCCACTACTG
* * * *
15847 CTTAGGGTGGTAGGACTACTAGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACC
1 CTTAGGGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACC
* *
15912 ATCTTCGATTTGCTCCACTACTG
66 ATCTCCGATCTGCTCCACTACTG
15935 CTTAGGGTGA
1 CTTAGGGTGA
15945 AAGAATCATA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (88 bp):
CTTAGGGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAACATAAGATTCACC
ATCTCCGATCTGCTCCACTACTG
Found at i:15975 original size:44 final size:42
Alignment explanation
Indices: 15924--16252 Score: 130
Period size: 44 Copynumber: 7.5 Consensus size: 42
15914 CTTCGATTTG
15924 CTCCACTACTGCTTAGGGTGAAAGAATCATAAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGAAAGAATC-T-AATCTTCAACCTA
* * * * * *
15968 CTCCACTACTGCTTAGGGTGATAGGA-CTGATTGCTTAAATCTG
1 CTCCACTACTGCTTAGGGTGAAAGAATCT-AAT-CTTCAACCTA
* * * * * * * * * * *
16011 CTTCTCAACTG-TATTGGGAAGGTAAGATTCATCATATTCAATCTG
1 CTCCACTACTGCT-TAGGG--TGAAAGAATC-TAATCTTCAACCTA
*
16056 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGAAAGAATCT--AATCTTCAACCTA
* * * *
16100 CTCCACTACTGCTTAGGGTGATAGGA-CTAATGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGTGAAAGAATCTAAT--CTTCAACCTA
* * * * * * * *
16143 CTTCTCCACTG-TATTGGGAAGATAAGAATC-ACCATCTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGA-AAGAATCTA--ATCTTCAACCTA
* * * *
16188 CTCCTCTACTTCTTAGGGTGACAA-AATCTTCAATCTTTAACCGA
1 CTCCACTACTGCTTAGGGTGA-AAGAATC-T-AATCTTCAACCTA
16232 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
16253 TTGGACTAAT
Statistics
Matches: 205, Mismatches: 59, Indels: 42
0.67 0.19 0.14
Matches are distributed among these distances:
41 3 0.01
42 6 0.03
43 52 0.25
44 89 0.43
45 46 0.22
46 6 0.03
47 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (42 bp):
CTCCACTACTGCTTAGGGTGAAAGAATCTAATCTTCAACCTA
Found at i:16024 original size:220 final size:220
Alignment explanation
Indices: 15637--16075 Score: 599
Period size: 220 Copynumber: 2.0 Consensus size: 220
15627 CTAAGGGTCA
* * * * *
15637 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGGAAGATAAGATTTACCAACTTCTATC
1 TAGGACTAATAGCTTAAATCTACTTCTCAACCGTATTGGGAACATAAGATTCACCAACTTCGATC
* * * *
15702 TGATCCACTACTGCCTAGGGTGACAGAATCGGGAATCTTCAACATACTCTACTACAACTTAGGGT
66 TGATCCACTACTGCCTAGGGTGAAAGAATCAGAAATCTTCAACATACTCCACTACAACTTAGGGT
* * *
15767 GATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTCCGA
131 GATAGGACTAATGGCTTAAATCTACTTCTCAACTGTATTGGGAAGATAAGATTCACCATATCCAA
15832 TCTGCTCCACTACTGCTTAGGGTGG
196 TCTGCTCCACTACTGCTTAGGGTGG
* * * * * * *
15857 TAGGACTACTAGCTTAAATCTGCTTCTCCACTGTATTGGGAACATAGGATTCACCATCTTCGATT
1 TAGGACTAATAGCTTAAATCTACTTCTCAACCGTATTGGGAACATAAGATTCACCAACTTCGATC
* * * * **
15922 TGCTCCACTACTGCTTAGGGTGAAAGAATCATAAATCTTCAACCTACTCCACTACTGCTTAGGGT
66 TGATCCACTACTGCCTAGGGTGAAAGAATCAGAAATCTTCAACATACTCCACTACAACTTAGGGT
* * * * * *
15987 GATAGGACTGATTGCTTAAATCTGCTTCTCAACTGTATTGGGAAGGTAAGATTCATCATATTCAA
131 GATAGGACTAATGGCTTAAATCTACTTCTCAACTGTATTGGGAAGATAAGATTCACCATATCCAA
16052 TCTGCTCCACTACTGCTTAGGGTG
196 TCTGCTCCACTACTGCTTAGGGTG
16076 ACAGAATCTG
Statistics
Matches: 188, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
220 188 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (220 bp):
TAGGACTAATAGCTTAAATCTACTTCTCAACCGTATTGGGAACATAAGATTCACCAACTTCGATC
TGATCCACTACTGCCTAGGGTGAAAGAATCAGAAATCTTCAACATACTCCACTACAACTTAGGGT
GATAGGACTAATGGCTTAAATCTACTTCTCAACTGTATTGGGAAGATAAGATTCACCATATCCAA
TCTGCTCCACTACTGCTTAGGGTGG
Found at i:16675 original size:113 final size:113
Alignment explanation
Indices: 16455--16659 Score: 268
Period size: 113 Copynumber: 1.8 Consensus size: 113
16445 CGATCTGCTC
* * * *
16455 CACTACTACTTAGGGTGACTGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGAGAGATTG
1 CACTACTACTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTACTTAGACAGATAG
* * *
16520 GGCTAATGGCTTATATCTGCTACTTCATTATCTTGAGAAGATATGATT
66 GACTAATGGCTTAAATCTGCTACTCCATTATCTTGAGAAGATATGATT
* * * * *
16568 CACTACTGCTTAGGGTGACAGTATCTCCAATGTTCAACCTACTCCACTACTGCTTACG-CTGATA
1 CACTACTACTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTACTTA-GACAGATA
* *
16632 GGACTGATGGCTTAAATCTGCTTCTCCA
65 GGACTAATGGCTTAAATCTGCTACTCCA
16660 CTGTGTTTGG
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
113 76 0.99
114 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (113 bp):
CACTACTACTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTACTTAGACAGATAG
GACTAATGGCTTAAATCTGCTACTCCATTATCTTGAGAAGATATGATT
Found at i:18309 original size:88 final size:88
Alignment explanation
Indices: 18213--18377 Score: 285
Period size: 88 Copynumber: 1.9 Consensus size: 88
18203 CTTAGGGTGA
* *
18213 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATCTTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGAGAACATAAGATTCACCATCTTCGATC
18278 TGCTCCACTACTAGTTAGCATGG
66 TGCTCCACTACTAGTTAGCATGG
* * *
18301 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAACATAGGATTCACCATCTTCGATT
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGAGAACATAAGATTCACCATCTTCGATC
18366 TGCTCCACTACT
66 TGCTCCACTACT
18378 CCTTAGGGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (88 bp):
TAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGAGAACATAAGATTCACCATCTTCGATC
TGCTCCACTACTAGTTAGCATGG
Found at i:18450 original size:220 final size:219
Alignment explanation
Indices: 18082--18509 Score: 572
Period size: 220 Copynumber: 1.9 Consensus size: 219
18072 CTTAGGGTGA
* * *
18082 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTGTTGGAAAGATAAGATTCACAACTTCTATCT
1 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTATTGGAAACATAAGATTCACAACTTCGATCT
* * * * * * *
18147 GATCCACTACTGTCTGGGGTGACAGAATCGGAAATCTTCAACCAACTCTACTAGTGCTTAGGGTG
66 GATCCACTACTCTCTAGGGTGAAAGAATCAGAAATCTTCAACCAACTCCACTACTACTTAGGGTG
* *
18212 ATAGGACTAATGGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATCTTCGAT
131 ATAGGACTAATCGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATATTCGAT
18277 CTGCTCCACTACTAGTTAGCATGG
196 CTGCTCCACTACTAGTTAGCATGG
* * * * *
18301 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GAGAACATAGGATTCACCATCTTCGAT
1 TAGGACTAATGGCTTAAATCTACTTCTCAACCGTATTGGA-AACATAAGATTCA-CAACTTCGAT
* * * * *
18365 TTGCTCCACTACTC-CTTAGGGTGAAATAATCATAAATCTTCAACCTACTCCACTACTACTTAGG
64 CTGATCCACTACTCTC-TAGGGTGAAAGAATCAGAAATCTTCAACCAACTCCACTACTACTTAGG
* * * * *
18429 GTGATAGTACTGATCGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCATCATATTC
128 GTGATAGGACTAATCGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATATTC
18494 GATCTGCTCCACTACT
193 GATCTGCTCCACTACT
18510 GCTTAAGGTG
Statistics
Matches: 179, Mismatches: 27, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
218 2 0.01
219 45 0.25
220 132 0.74
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (219 bp):
TAGGACTAATGGCTTAAATCTACTTCTCAACCGTATTGGAAACATAAGATTCACAACTTCGATCT
GATCCACTACTCTCTAGGGTGAAAGAATCAGAAATCTTCAACCAACTCCACTACTACTTAGGGTG
ATAGGACTAATCGCTTAAATCTGCTTCTCCACAGTATTGGGAAGATAAGATTCACCATATTCGAT
CTGCTCCACTACTAGTTAGCATGG
Found at i:18457 original size:132 final size:132
Alignment explanation
Indices: 18301--19026 Score: 1024
Period size: 132 Copynumber: 5.5 Consensus size: 132
18291 GTTAGCATGG
* * * *
18301 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAACATAGGATTCACCATCTTCGATT
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* * * *
18366 TGCTCCACTACTCCTTAGGGTGAAATAATCAT-AAATCTTCAACCTACTCCACTACTACTTAGGG
66 TGCTCCACTACTGCTTAGGGTGACAGAATC-TGAAATCTTCAACCTACTCCACTACTGCTTAGGG
18430 TGA
130 TGA
* * * * * *
18433 TAGTACTGATCGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCATCATATTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* * *
18498 TGCTCCACTACTGCTTAAGGTGACAGAATGTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
66 TGCTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGT
18563 GA
131 GA
* ** * *
18565 TAGGACTAATGGCTTAAATCTGCTTCTCAACAATGTTAGGAAGATAAGATTCACCATCTTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* * * * *
18630 -GACTCCACTACTGCTTAGGGCGACAGAATCTGCAATCTTCAACCAACTTCACTATTGCTTAGGG
66 TG-CTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGG
18694 TGA
130 TGA
* *
18697 TAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* *
18762 TGCTCCACTACTGCTCAGGGTGACAGAATCTGAAATCTTCAACCTACTCAACTACTGCTTAGGGT
66 TGCTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGT
18827 GA
131 GA
* * *
18829 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAGGAATCACCATCTTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* * * *
18894 TGCTCCACTACTGCTTAGGGTGACAGAATCTGATATCTTTAACCTACTCGACTCCTGCTTAGGGT
66 TGCTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGT
*
18959 GG
131 GA
* ** * *
18961 TAGGACGAATGGCTTAAATCCACTTCTCCACTGTGTTGGGAAGATAAGAATCACCATCTTCGATC
1 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
19026 T
66 T
19027 TGTAACACCC
Statistics
Matches: 528, Mismatches: 63, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
131 2 0.00
132 525 0.99
133 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (132 bp):
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
TGCTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGT
GA
Found at i:20452 original size:39 final size:40
Alignment explanation
Indices: 20407--20630 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
20397 GCTCCTCGTT
* * * *
20407 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
20447 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
20486 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
20526 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
20565 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
20606 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
20631 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:20510 original size:79 final size:78
Alignment explanation
Indices: 20407--20631 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
20397 GCTCCTCGTT
* * *
20407 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
20472 TTTAATAACTCGCA
66 CTT-ATAACTCGCA
* * * *
20486 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
20550 AACTTGTATCTCGCA
65 -ACTTATAACTCGCA
* * * * * *
20565 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
20629 GAC
64 GAC
20632 AGCATTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 91 0.75
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
CTTATAACTCGCA
Found at i:20639 original size:41 final size:41
Alignment explanation
Indices: 20562--20639 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
20552 CTTGTATCTC
* * *
20562 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
20603 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
20640 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Done.