genome.fa.s242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3430
Parameters: 2 7 7 80 10 50 1000
Length:  86312

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13697--13733	14	2.6	15	83	12	51	56	0	5	37	1.22
13752--13860	45	2.4	45	86	4	139	62	5	30	1	1.28
15942--16016	31	2.5	31	77	2	80	34	12	10	42	1.77
18359--18399	3	13.7	3	100	0	82	68	0	0	31	0.90
18713--18774	18	3.6	18	74	24	69	41	8	0	50	1.32
18711--18776	34	1.9	34	93	6	116	42	7	0	50	1.31
19053--19132	29	2.7	29	82	9	90	50	11	7	31	1.66
19826--19869	3	14.7	3	100	0	88	65	0	0	34	0.93
20229--20283	20	2.8	19	72	20	51	47	1	0	50	1.11
22019--22071	24	2.2	24	96	0	97	49	24	7	18	1.74
23729--23763	16	2.3	15	90	5	52	62	2	2	31	1.24
23916--24060	25	5.8	25	72	13	102	55	4	6	32	1.47
23891--24038	48	3.0	48	78	11	138	56	4	6	31	1.46
23967--24033	29	2.3	29	82	5	73	56	4	5	32	1.43
23908--24123	25	9.0	23	67	19	79	56	4	5	34	1.42
24606--24659	18	3.3	18	66	28	57	22	7	48	22	1.75
24606--24669	30	2.1	30	94	0	110	18	6	50	25	1.70
28673--28710	18	2.1	19	90	5	60	65	0	0	34	0.93
29902--29999	48	2.0	48	98	0	187	42	4	21	31	1.71
31088--31171	26	3.2	26	96	0	150	33	4	25	36	1.77
32642--32693	25	2.0	26	81	3	61	40	21	13	25	1.89
34035--34084	19	2.5	19	80	6	55	58	4	6	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37405--37445	11	3.5	12	81	15	50	60	0	0	39	0.96
37424--37496	32	2.3	31	82	15	87	61	2	4	31	1.29
37508--37566	19	2.9	20	83	16	61	61	1	3	33	1.23
37508--37560	15	3.7	15	76	21	51	60	1	3	33	1.26
39277--39332	26	2.2	26	96	0	103	32	7	25	35	1.83
42286--42322	19	2.1	18	90	10	58	64	0	0	35	0.94
44345--44416	32	2.3	30	83	4	81	52	4	2	40	1.35
47387--47489	54	1.9	54	89	0	161	31	15	23	30	1.95
48123--48180	26	2.2	26	96	0	107	34	3	24	37	1.72
49645--49696	25	2.0	26	85	3	70	38	23	13	25	1.91
53819--53876	26	2.2	26	93	0	98	34	5	24	36	1.78
55349--55400	25	2.0	26	85	3	70	38	23	13	25	1.91
61064--61130	27	2.6	26	76	19	70	50	0	4	44	1.22
61869--61917	20	2.5	20	93	0	80	44	0	18	36	1.50
64924--65197	137	2.0	137	97	0	512	18	16	23	40	1.90
68308--68492	40	4.6	39	82	6	203	24	22	27	25	2.00
68308--68492	79	2.3	81	82	7	218	24	22	27	25	2.00
68361--68515	79	2.0	79	82	7	190	26	20	27	25	1.99
76469--76652	39	4.6	41	82	11	206	24	22	27	25	2.00
76469--76652	79	2.3	80	83	8	225	24	22	27	25	2.00
76522--76685	78	2.1	79	83	7	201	26	21	27	25	1.99
84550--84728	39	4.6	39	76	12	163	24	23	27	24	2.00

Tables:   1

The End!