Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2508

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23421
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:14203 original size:23 final size:24

Alignment explanation


    Indices: 14157--14203  Score: 78
    Period size: 24  Copynumber: 2.0  Consensus size: 24

      14147 ATACACGGAT

                   *                
      14157 TCCAACCCAAACACACCAGTAATA
          1 TCCAACCAAAACACACCAGTAATA

                                    
      14181 TCCAACCAAAACACACCAG-AATA
          1 TCCAACCAAAACACACCAGTAATA

      14204 ATCATGTAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  23    4  0.18
  24   18  0.82

ACGTcount: A:0.49, C:0.36, G:0.04, T:0.11


Consensus pattern (24 bp):   
TCCAACCAAAACACACCAGTAATA

Found at i:20703 original size:6 final size:6

Alignment explanation


    Indices: 20692--20729  Score: 76
    Period size: 6  Copynumber: 6.3  Consensus size: 6

      20682 TGGAGCTGGT

                                                        
      20692 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GC
          1 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GC

      20730 CACAGCCGCA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.32, C:0.18, G:0.50, T:0.00


Consensus pattern (6 bp):   
GCAGGA

Done.