genome.fa.s2422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2876
Parameters: 2 7 7 80 10 50 1000
Length:  39492

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7413--7463	26	2.0	26	96	0	93	29	35	23	11	1.90
7179--7541	103	3.6	104	93	4	600	30	30	20	19	1.97
7867--7930	30	2.2	29	81	10	76	29	28	6	35	1.82
7874--7930	30	1.9	30	85	3	80	29	24	7	38	1.82
8746--9073	132	2.5	131	84	1	413	33	19	18	28	1.95
12052--12273	88	2.5	88	92	0	372	23	24	21	30	1.99
12238--12421	45	4.1	45	73	5	140	31	26	15	26	1.96
12219--12766	133	4.1	133	90	0	846	27	24	18	28	1.98
12582--12667	45	1.9	45	80	4	102	27	25	16	30	1.97
12803--12930	64	2.0	64	89	0	193	35	14	20	29	1.93
13609--13754	52	2.8	52	92	1	229	50	10	15	23	1.75
14690--14738	23	2.1	23	84	0	62	36	6	10	46	1.63
14925--14984	27	2.2	28	80	14	72	70	1	8	20	1.22
14935--14983	13	3.7	13	86	10	64	73	2	8	16	1.16
15749--15829	40	2.0	40	80	0	90	35	9	16	38	1.81
16036--16074	6	6.5	6	100	0	78	17	17	15	48	1.81
16054--16166	45	2.5	45	84	2	147	21	20	19	38	1.93
16899--16925	7	3.9	7	100	0	54	85	0	0	14	0.61
19676--19723	19	2.5	19	89	0	78	39	14	25	20	1.91
21329--21675	131	2.6	132	86	0	489	37	18	18	25	1.94
21329--21726	131	3.0	131	83	3	469	35	18	18	27	1.94
22866--22922	30	1.9	30	100	0	114	45	8	21	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23085--23133	26	1.9	25	83	4	62	57	6	8	28	1.52
33065--33108	22	2.0	22	86	8	63	38	9	6	45	1.63
37043--37102	30	2.0	30	90	0	93	25	1	13	60	1.43

Tables:   1

The End!