Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3688
Parameters: 2 7 7 80 10 50 1000
Length:  33856

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4924--4955
17
1.9
16
93
6
55
40
18
3
37
1.67
5199--5414
39
5.6
39
82
8
230
25
29
20
24
1.99
12329--12408
39
2.0
40
82
2
99
23
22
28
25
1.99
17055--17389
47
7.1
47
90
0
492
33
10
29
25
1.90
17360--17449
46
2.0
46
90
0
144
35
6
27
30
1.83
19767--19945
27
6.6
27
82
5
182
29
27
15
27
1.96
19788--19943
82
1.9
81
85
6
217
28
27
15
28
1.96
20493--20517
13
1.9
13
100
0
50
32
16
20
32
1.94
21646--21969
40
8.1
40
89
1
497
24
19
29
26
1.98
23225--23446
104
2.2
103
91
3
358
18
19
31
31
1.95
23367--23515
69
2.1
71
88
4
223
23
17
28
30
1.97
24777--24907
29
4.6
27
78
9
127
22
16
29
32
1.95
24765--24914
57
2.6
57
86
0
201
23
18
27
31
1.97
28431--28509
37
2.1
37
90
0
122
25
31
18
24
1.98
28628--29091
47
9.7
47
91
2
714
29
29
9
31
1.88
28628--29091
96
4.9
94
92
2
714
29
29
9
31
1.88
31887--32074
40
4.7
40
91
2
299
23
22
29
25
1.99
31881--32074
79
2.5
80
88
5
304
24
22
28
24
2.00

Tables:   1

The End!