genome.fa.s2434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold266
Parameters: 2 7 7 80 10 50 1000
Length:  45812

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6371--6541	69	2.5	69	83	6	190	28	14	23	33	1.94
6545--6895	148	2.4	148	83	6	451	31	14	19	34	1.92
6559--6890	76	4.5	74	87	4	429	31	14	20	33	1.93
7276--7331	25	2.2	25	83	6	67	33	14	7	44	1.72
7305--7501	73	2.7	72	91	4	306	31	17	18	31	1.95
8764--8815	5	11.0	5	78	12	56	65	0	34	0	0.93
9646--9843	17	11.3	17	69	16	102	33	15	9	41	1.79
9696--9737	20	2.1	20	86	8	59	40	11	7	40	1.69
9675--9842	54	3.2	52	74	11	146	32	16	8	42	1.79
9717--9844	35	3.7	34	78	11	116	32	16	8	42	1.78
9752--9894	35	3.9	37	80	13	172	31	14	9	44	1.78
9905--9944	19	2.2	18	90	4	62	45	2	7	45	1.45
9947--9999	19	2.7	19	82	2	70	35	13	13	37	1.83
9918--10038	56	2.2	55	82	10	147	37	9	11	42	1.73
9924--10015	16	5.3	16	74	15	60	36	8	10	43	1.71
9646--10015	17	21.3	16	66	20	99	33	13	10	42	1.77
10042--10077	18	1.9	19	88	5	56	47	2	8	41	1.48
15648--15733	36	2.3	35	80	7	91	56	4	5	32	1.43
15731--15784	25	2.0	27	82	10	67	53	5	3	37	1.42
16063--16110	21	2.2	22	82	10	55	58	8	2	31	1.39
16287--16328	23	1.9	21	85	9	57	59	7	2	30	1.37
16971--17023	24	2.2	25	93	3	90	32	0	3	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31303--31331	9	3.3	9	95	4	51	34	10	0	55	1.34
39008--39062	26	2.0	27	82	6	67	38	1	1	58	1.20
41227--41273	20	2.3	20	86	13	62	34	2	4	59	1.29

Tables:   1

The End!