genome.fa.s2436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold310
Parameters: 2 7 7 80 10 50 1000
Length:  19589

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303--1349	15	3.1	15	80	20	53	65	2	2	29	1.15
1503--1560	22	2.6	22	78	13	66	53	5	8	32	1.54
1579--1712	25	5.6	25	68	15	77	57	2	4	35	1.34
1531--1647	25	4.5	27	70	11	91	56	4	6	32	1.45
1574--1660	27	3.3	27	70	13	74	58	2	4	34	1.31
2195--2388	28	6.8	29	88	7	283	21	3	50	25	1.65
2195--2388	85	2.3	83	91	6	300	21	3	50	25	1.65
2195--2388	57	3.4	55	90	8	284	21	3	50	25	1.65
3123--3172	14	3.6	14	81	7	57	64	4	12	20	1.43
3134--3174	15	2.8	15	78	14	50	65	4	14	14	1.42
3175--3319	72	2.0	71	82	9	175	33	21	17	28	1.96
3301--3335	14	2.5	14	90	0	61	60	5	17	17	1.55
3315--3530	72	3.0	73	85	8	284	31	23	18	26	1.97
3190--4155	232	4.2	233	84	8	1181	34	21	16	27	1.95
3586--3778	70	2.7	70	91	4	307	31	21	18	29	1.96
3761--3798	14	2.5	15	83	12	51	63	7	7	21	1.47
3819--4015	72	2.8	72	84	4	249	33	21	14	30	1.93
3931--4090	85	1.9	82	83	10	205	38	19	14	27	1.90
4007--4147	71	2.0	73	91	2	232	39	23	15	21	1.92
4177--4615	69	6.4	69	76	16	384	33	21	15	30	1.94
4052--4432	122	3.0	124	73	15	322	36	22	14	27	1.92
4297--4622	69	4.6	72	85	8	422	32	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4297--4622	142	2.3	139	83	8	421	32	20	15	31	1.94
4639--4876	68	3.6	69	85	4	285	34	20	14	30	1.92
5007--5255	70	3.5	70	89	5	371	31	21	16	30	1.95
5190--5346	83	1.9	80	84	8	208	37	20	14	27	1.92
5265--5407	71	2.0	72	91	2	236	37	23	16	22	1.93
5550--5893	75	4.7	74	84	7	368	33	20	15	30	1.94
5550--5900	144	2.4	145	85	6	476	34	19	15	30	1.93
5900--6073	70	2.5	68	84	7	208	33	22	14	28	1.94
14354--14396	16	2.7	15	92	7	68	65	2	0	32	1.06
14350--14396	8	5.9	8	82	9	60	65	2	0	31	1.04
14627--14693	14	4.9	14	69	18	52	61	1	2	34	1.20
14604--14681	31	2.5	31	81	6	79	58	3	5	32	1.38
14545--14768	25	9.0	25	69	16	101	56	4	5	33	1.42
14557--14703	27	5.6	27	73	9	108	54	4	7	33	1.50
15245--15417	30	5.8	30	91	2	287	21	3	49	25	1.65
15245--15417	58	2.9	59	95	3	312	21	3	49	25	1.65
15245--15417	88	1.9	90	91	2	287	21	3	49	25	1.65
15893--15960	16	4.2	16	96	0	118	27	0	36	35	1.58
15941--16035	45	2.1	44	88	1	136	34	5	27	32	1.79
16173--16227	25	2.2	25	84	9	69	52	1	0	45	1.11
16358--16506	47	3.3	46	69	17	132	47	3	3	45	1.35

Tables:   1

The End!