Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold627
Parameters: 2 7 7 80 10 50 1000
Length:  42204

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10032--10079
13
3.7
13
78
10
62
75
4
6
14
1.16
15278--15317
11
3.8
10
86
6
53
80
7
0
12
0.91
15278--15317
21
1.9
21
94
0
71
80
7
0
12
0.91
15361--15406
13
3.5
13
91
8
76
73
0
8
17
1.07
15356--15406
26
2.0
26
96
0
93
66
0
11
21
1.23
19204--19295
29
3.0
34
61
32
80
30
9
14
45
1.77
20584--20613
11
2.7
11
94
0
51
80
10
0
10
0.92
20657--20690
13
2.5
14
95
4
61
73
0
8
17
1.08
24835--24912
22
3.4
23
76
11
63
26
3
30
38
1.74
24875--24917
22
1.9
23
90
4
70
25
4
32
37
1.77
26047--26105
30
2.0
30
83
6
75
28
15
25
30
1.96
27918--27964
20
2.3
20
81
0
58
29
34
12
23
1.92
29929--29962
11
3.0
11
87
8
50
70
8
0
20
1.13
29932--29963
12
2.7
12
95
0
55
78
6
0
15
0.95
30004--30061
16
3.6
16
93
4
98
62
5
12
20
1.49
30006--30061
17
3.4
17
97
2
105
64
5
10
19
1.44
33967--34066
12
8.7
11
75
17
71
78
4
7
11
1.08
33977--34043
13
5.6
13
84
12
83
76
4
5
13
1.13
34039--34079
19
2.2
18
95
4
73
82
0
12
4
0.81
33965--34079
10
10.6
10
74
17
72
76
3
8
11
1.13
33967--34066
11
8.7
11
76
15
87
78
4
7
11
1.08
38475--38513
20
1.9
21
89
5
62
23
28
12
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38903--38928
13
2.0
13
100
0
52
46
0
7
46
1.31
41046--41080
18
1.9
18
94
0
61
80
5
14
0
0.89
41028--41123
12
7.9
12
69
15
54
73
2
18
5
1.11

Tables:   1

The End!