genome.fa.s2448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold653
Parameters: 2 7 7 80 10 50 1000
Length:  38497

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687--840	28	5.5	28	93	3	231	33	27	12	26	1.92
687--840	56	2.8	56	93	1	256	33	27	12	26	1.92
8892--9045	28	5.5	28	95	0	256	33	27	12	26	1.92
8892--9070	56	3.2	56	89	1	261	33	27	12	26	1.92
22379--22530	67	2.2	68	79	12	170	32	15	28	22	1.95
26037--26063	6	4.5	6	100	0	54	18	18	14	48	1.82
26469--26501	6	5.5	6	96	0	57	81	0	3	15	0.80
30195--30272	29	2.7	28	84	11	104	25	15	30	28	1.96
36394--36435	17	2.4	18	80	4	50	50	2	0	47	1.14
36747--36794	17	2.9	16	82	11	53	29	0	0	70	0.87
36845--36894	24	2.0	25	84	3	66	32	0	6	62	1.20
36888--36937	13	3.7	13	76	10	55	38	0	0	62	0.96
36900--36956	15	3.7	15	72	27	57	35	0	0	64	0.93
36923--36966	18	2.4	19	84	3	63	34	0	0	65	0.93
36898--36941	7	6.3	7	79	10	54	31	0	0	68	0.90
36888--36954	28	2.3	28	87	7	89	35	0	0	64	0.94
36915--37017	22	4.6	23	69	20	76	34	0	0	63	1.08
36922--37039	29	4.5	26	72	20	79	34	0	0	63	1.06
37030--37101	37	1.9	37	83	5	92	29	0	1	69	0.97
37015--37142	64	2.0	63	82	7	152	32	0	0	65	1.04
37174--37293	23	5.0	24	69	17	72	33	1	0	65	1.03
37087--37307	19	12.4	18	64	25	55	32	1	2	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37199--37284	38	2.3	36	78	11	93	34	2	0	62	1.08
37245--37378	28	4.8	29	66	16	70	35	1	0	62	1.10
37246--37383	55	2.5	56	78	13	142	35	1	0	62	1.10
37258--37343	20	4.2	20	76	18	86	31	2	1	65	1.13
37352--37394	18	2.4	17	81	11	50	37	0	2	60	1.10
37357--37400	19	2.3	19	84	11	63	36	0	2	61	1.09
37414--37497	16	5.3	15	71	14	62	38	0	1	60	1.04
37594--37619	13	2.0	13	100	0	52	15	0	0	84	0.62
37581--37634	19	2.9	19	80	2	65	27	0	0	72	0.85
37607--37663	24	2.5	23	82	5	71	29	0	0	70	0.88
37620--37754	63	2.1	63	80	9	150	37	0	1	61	1.05
37728--37791	28	2.3	27	81	10	67	34	0	0	65	0.93
37750--37811	27	2.3	27	83	10	74	27	0	1	70	0.96
37799--37857	29	2.0	29	84	12	77	27	0	1	71	0.96
37751--37853	49	2.2	46	77	15	106	27	0	1	70	0.97
37734--37862	35	3.8	35	75	12	101	30	0	1	68	0.99
37766--37880	18	6.5	17	71	23	62	28	0	1	68	1.05
37694--37862	36	4.7	36	70	18	104	30	0	1	68	0.98
37870--37945	22	3.4	21	73	18	64	34	1	0	64	1.02
37966--38005	21	1.9	21	85	10	55	40	2	0	57	1.12
38130--38245	11	10.4	11	74	17	62	31	0	0	68	0.96
38179--38230	15	3.6	14	79	7	59	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38125--38281	69	2.3	68	78	13	160	28	3	0	68	1.05
38176--38246	11	7.0	10	74	19	67	25	0	0	74	0.82
38125--38276	34	4.4	36	76	15	133	28	2	0	68	1.03
38197--38260	22	2.9	22	83	6	76	23	1	0	75	0.90
38149--38276	33	3.6	35	78	15	104	28	3	0	68	1.04
38176--38249	19	3.7	19	73	21	62	25	0	0	74	0.82
38086--38274	14	14.2	13	68	21	74	29	2	0	67	1.06
38382--38477	35	3.1	30	77	20	90	35	2	3	59	1.25

Tables:   1

The End!