genome.fa.s2454.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3451
Parameters: 2 7 7 80 10 50 1000
Length:  31537

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666--2981	47	6.7	47	93	3	514	32	8	29	29	1.86
2666--2981	96	3.4	94	92	3	514	32	8	29	29	1.86
2666--2981	143	2.3	141	92	3	516	32	8	29	29	1.86
3100--3177	36	2.1	36	88	2	111	24	17	32	25	1.97
4407--4995	78	7.4	79	90	4	900	23	20	28	27	1.99
4407--5022	40	15.4	40	90	4	908	24	20	28	27	1.99
4791--4857	23	3.2	23	64	24	65	23	19	28	28	1.98
8691--9101	47	8.7	47	95	0	698	31	8	30	28	1.87
9220--9298	37	2.1	37	88	0	113	25	18	30	25	1.98
11251--11314	26	2.5	26	89	5	94	31	21	18	28	1.97
11928--11968	16	2.4	18	80	8	50	19	2	9	68	1.29
14990--15067	24	3.3	24	80	3	95	24	21	15	38	1.92
14976--15091	47	2.4	47	78	7	117	25	22	15	37	1.93
16765--17201	27	16.1	27	80	5	328	27	22	10	40	1.86
16768--17200	54	8.0	54	87	3	491	27	22	10	39	1.86
16768--17201	81	5.4	81	86	3	588	27	22	10	40	1.86
17210--17405	27	7.3	27	82	0	221	35	18	20	25	1.95
17210--17389	54	3.3	54	86	4	247	35	19	20	25	1.95
17577--17659	27	3.1	26	87	5	112	19	21	21	37	1.94
17969--18042	27	2.8	27	83	6	80	17	22	21	37	1.94
18182--18217	6	6.0	6	93	0	63	16	16	13	52	1.74
19176--19330	76	2.0	76	94	0	274	41	12	10	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22309--22539	79	2.9	80	84	7	301	25	21	26	25	2.00
22309--22532	119	1.9	118	84	6	301	25	21	26	26	2.00
22309--22532	40	5.7	40	89	4	296	25	21	26	26	2.00
22309--22565	119	2.2	118	81	7	290	26	21	26	26	1.99
22322--22565	79	3.1	78	81	9	273	27	20	25	26	1.99
29889--30112	79	2.8	78	87	4	308	24	21	27	26	2.00
29889--30112	40	5.7	40	88	6	305	24	21	27	26	2.00
29896--30145	79	3.2	77	83	8	290	26	20	26	26	1.99

Tables:   1

The End!