Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold335
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48935
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Found at i:841 original size:90 final size:90
Alignment explanation
Indices: 690--936 Score: 310
Period size: 91 Copynumber: 2.7 Consensus size: 90
680 AAGAGTCAAG
* * * *
690 AAAACAAAAATTG-AAATAACCTCAGTGTCCTGAGGCTCAACTCA-CTTTCGCAATATGAGTTGA
1 AAAACAGAAATTGAAAAT-ACCTCAGCGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
753 TTT-AAGCAGAATTTGTAAACAAATTGA
65 TTTAAAACAGAA-TT-AAAAAAAATTGA
780 AAAACAGAAATTGAAAATA-CTCAGCGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAAACAGAAATTGAAAATACCTCAGCGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
844 TTGAAAAACAGAATTAAAAAAAATTGA
66 TT--AAAACAGAATTAAAAAAAATTGA
*
871 AAAACAGAAATT-AAAATACCTC-GCGTGCCC-GAGGCTCAGCTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGC--GCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
933 ATTT
64 ATTT
937 TTGAAAAGCA
Statistics
Matches: 141, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
89 22 0.16
90 42 0.30
91 64 0.45
92 6 0.04
93 7 0.05
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (90 bp):
AAAACAGAAATTGAAAATACCTCAGCGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTAAAACAGAATTAAAAAAAATTGA
Found at i:957 original size:69 final size:70
Alignment explanation
Indices: 867--1025 Score: 241
Period size: 69 Copynumber: 2.3 Consensus size: 70
857 TTAAAAAAAA
* * * *
867 TTGAAAAACAGAAATTAAAATACCTCGCGTGCCCGAGGCTCAGCTCACCTC-TCGCAATATGAGT
1 TTGAAAAGCAGAAATTGAAATACCTCACGTGCCCGAGGC-CAACTCACCTCTTCGCAATATGAGT
931 TGATTT
65 TGATTT
*
937 TTGAAAAGCA-AAATTGAAATACCTCACGTGTCCGAGGCCAACTCACCTCTTCGCAATATGAGTT
1 TTGAAAAGCAGAAATTGAAATACCTCACGTGCCCGAGGCCAACTCACCTCTTCGCAATATGAGTT
1001 GATTT
66 GATTT
*
1006 TTGAAAAGCATAAATTGAAA
1 TTGAAAAGCAGAAATTGAAA
1026 AAATGGAAAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
68 10 0.12
69 54 0.66
70 18 0.22
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (70 bp):
TTGAAAAGCAGAAATTGAAATACCTCACGTGCCCGAGGCCAACTCACCTCTTCGCAATATGAGTT
GATTT
Found at i:11015 original size:16 final size:15
Alignment explanation
Indices: 10989--11023 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
10979 TGATGTGAAT
10989 AATATAAAATATTAA
1 AATATAAAATATTAA
*
11004 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
11020 AATA
1 AATA
11024 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:11194 original size:20 final size:20
Alignment explanation
Indices: 11137--11196 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
11127 AATACTACAT
11137 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
11156 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
11179 AAATATGTACATAATATA
1 AAATATGTACATAATATA
11197 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:11205 original size:25 final size:25
Alignment explanation
Indices: 11150--11321 Score: 129
Period size: 25 Copynumber: 7.0 Consensus size: 25
11140 TATGTACATA
* * *
11150 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
11173 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
11198 TGTAAAAAATACATACATAATATA-
1 TATAAAAAATATATACATAATATAG
* * *
11222 -AT-TAAAATATATACATAAGATAACA
1 TATAAAAAATATATACATAATAT-A-G
* *
11247 TGTAAAAAATATATAAATAATATAG
1 TATAAAAAATATATACATAATATAG
* * *
11272 TATTAAAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* * *
11297 TATAATATATATATACGTAATATAG
1 TATAAAAAATATATACATAATATAG
11322 AATTTAGAAT
Statistics
Matches: 114, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
22 16 0.14
23 19 0.17
24 1 0.01
25 60 0.53
26 2 0.02
27 16 0.14
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Found at i:11384 original size:23 final size:25
Alignment explanation
Indices: 11341--11386 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11331 TATACCTAAT
11341 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
11366 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
11387 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:11904 original size:30 final size:30
Alignment explanation
Indices: 11867--11964 Score: 160
Period size: 30 Copynumber: 3.3 Consensus size: 30
11857 TAGGTACAAG
* * *
11867 TGGTGGTGAAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
*
11897 AGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
11927 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
11957 TGGTGGTG
1 TGGTGGTG
11965 CCAAAGGCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.47, T:0.29
Consensus pattern (30 bp):
TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
Found at i:11925 original size:18 final size:18
Alignment explanation
Indices: 11902--11955 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
11892 GGAGTAGGTG
11902 GTGGAGCAATTGTGGCTA
1 GTGGAGCAATTGTGGCTA
*
11920 GTGGAG----T-TGG-TG
1 GTGGAGCAATTGTGGCTA
11932 GTGGAGCAATTGTGGCTA
1 GTGGAGCAATTGTGGCTA
11950 GTGGAG
1 GTGGAG
11956 TTGGTGGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.19, C:0.07, G:0.46, T:0.28
Consensus pattern (18 bp):
GTGGAGCAATTGTGGCTA
Found at i:17444 original size:62 final size:62
Alignment explanation
Indices: 17358--17531 Score: 269
Period size: 62 Copynumber: 2.8 Consensus size: 62
17348 CTATACTTTG
* * *
17358 AAAATGTCCAACGTGTTATATGAACTATCAATTTGTGTATTATTTGGTATGTATACTTTCAT
1 AAAATGTTCAATGTGATATATGAACTATCAATTTGTGTATTATTTGGTATGTATACTTTCAT
17420 AAAATGTTCAATGTGATATATGAACTATCAATTTGTGTATTATTTGGTATGTATACTTTCAT
1 AAAATGTTCAATGTGATATATGAACTATCAATTTGTGTATTATTTGGTATGTATACTTTCAT
* * *
17482 AAAATGTTCAATCTGCTACT-TGAACTATCAATTTGTGTACTATTATGGTA
1 AAAATGTTCAATGTGATA-TATGAACTATCAATTTGTGTATTATT-TGGTA
17532 CCAGGAGTTA
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
62 98 0.94
63 6 0.06
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (62 bp):
AAAATGTTCAATGTGATATATGAACTATCAATTTGTGTATTATTTGGTATGTATACTTTCAT
Found at i:19873 original size:24 final size:24
Alignment explanation
Indices: 19838--19891 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
19828 TTACATTATA
*
19838 CAATCCAA-TTCAT-ATATCATTT
1 CAATTCAATTTCATAATATCATTT
*
19860 CACATTCAATTTCATAATCTCATTT
1 CA-ATTCAATTTCATAATATCATTT
19885 CAATTCA
1 CAATTCA
19892 TCATCAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 10 0.37
25 10 0.37
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (24 bp):
CAATTCAATTTCATAATATCATTT
Found at i:20997 original size:15 final size:15
Alignment explanation
Indices: 20977--21028 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
20967 ACTACAAAAC
20977 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
20992 ATTTATAATTTTAATAAAT
1 ATTTAT--TATTAAT--AT
*
21011 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
21026 ATT
1 ATT
21029 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:21149 original size:22 final size:22
Alignment explanation
Indices: 21109--21164 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
21099 AATAAAATTG
*
21109 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
21129 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
21151 TATTAATAATTTAT
1 AAATAATAAATTAT
21165 TATATGAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:21164 original size:16 final size:16
Alignment explanation
Indices: 21143--21175 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
21133 AATAAATTAT
*
21143 ATTTATTATATTAATA
1 ATTTATTATATGAATA
21159 ATTTATTATATGAATA
1 ATTTATTATATGAATA
21175 A
1 A
21176 ATATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTATTATATGAATA
Found at i:23452 original size:30 final size:31
Alignment explanation
Indices: 23399--23459 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
23389 TGGTCATAAG
* *
23399 AATTGTTCAACTAGAGAATTTGATTAAAGAA
1 AATTGGTCAAATAGAGAATTTGATTAAAGAA
*
23430 AATTGGTCAAATAGATAA-TTGATTAAAGAA
1 AATTGGTCAAATAGAGAATTTGATTAAAGAA
23460 TTTTCTTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 12 0.44
31 15 0.56
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.31
Consensus pattern (31 bp):
AATTGGTCAAATAGAGAATTTGATTAAAGAA
Found at i:24009 original size:24 final size:25
Alignment explanation
Indices: 23968--24014 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
23958 AATATTAAAT
23968 TTAATCTAATACTTAAGT-ATTATA
1 TTAATCTAATACTTAAGTGATTATA
*
23992 TTAATTTAATA-TTAAAGTGATTA
1 TTAATCTAATACTT-AAGTGATTA
24015 AGTTTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 14 0.70
25 4 0.20
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (25 bp):
TTAATCTAATACTTAAGTGATTATA
Found at i:30331 original size:20 final size:21
Alignment explanation
Indices: 30284--30332 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
30274 ATATGCATAG
*
30284 CGTATAT-ATAAAAACGTATA
1 CGTATATAATAAAAACATATA
*
30304 CGTAATATAATAAAAATATATA
1 CGT-ATATAATAAAAACATATA
30326 -GTATATA
1 CGTATATA
30333 CATACATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 6 0.24
22 11 0.44
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (21 bp):
CGTATATAATAAAAACATATA
Found at i:32432 original size:42 final size:41
Alignment explanation
Indices: 32308--32432 Score: 187
Period size: 42 Copynumber: 3.0 Consensus size: 41
32298 CGTGACTTCA
* *
32308 ATCAATCCTATTGAAACTTCAAGGAGATCTTGCTGTGGCTTCG
1 ATCAATCC-ACTGAAACTTCAAGGAGATC-TGCTGTGGCTTTG
* *
32351 ATTAATCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
1 ATCAATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
32392 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
1 ATCAA-TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
32433 TAGCTGCTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 15 0.20
42 53 0.71
43 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (41 bp):
ATCAATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
Found at i:33028 original size:43 final size:44
Alignment explanation
Indices: 32960--33051 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 44
32950 TACATTTAGC
* * *
32960 CTGCTCCACTGCGACTTCAAGGAGATGAGACTTGTAACTTCAGT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
* * *
33004 CTGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTCAAT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
33047 CTGCT
1 CTGCT
33052 TCGCTGAGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 30 0.71
44 12 0.29
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (44 bp):
CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCAAT
Found at i:34546 original size:16 final size:17
Alignment explanation
Indices: 34518--34565 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
34508 CCTTTTTTGA
*
34518 AAACACGAAAATTTTA-
1 AAACACAAAAATTTTAG
* *
34534 AAATACAAGAATTTTAG
1 AAACACAAAAATTTTAG
34551 AAACACAAAAATTTT
1 AAACACAAAAATTTT
34566 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.56, C:0.10, G:0.06, T:0.27
Consensus pattern (17 bp):
AAACACAAAAATTTTAG
Found at i:34563 original size:17 final size:16
Alignment explanation
Indices: 34512--34565 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
34502 CTTTTTCCTT
*
34512 TTTTGAAAACACGAAAA
1 TTTT-AAAACACAAAAA
* *
34529 TTTTAAAATACAAGAA
1 TTTTAAAACACAAAAA
34545 TTTTAGAAACACAAAAA
1 TTTTA-AAACACAAAAA
34562 TTTT
1 TTTT
34566 TTTTTTAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.31
Consensus pattern (16 bp):
TTTTAAAACACAAAAA
Found at i:34666 original size:16 final size:17
Alignment explanation
Indices: 34635--34670 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
34625 ACGAATCTTC
*
34635 TTTTTGAAACACGAAAA
1 TTTTTAAAACACGAAAA
34652 TTTTTAAAACA-GAAAA
1 TTTTTAAAACACGAAAA
34668 TTT
1 TTT
34671 GTTTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:34897 original size:53 final size:53
Alignment explanation
Indices: 34805--34980 Score: 137
Period size: 53 Copynumber: 3.3 Consensus size: 53
34795 AACGCGGAAA
* * * *
34805 TTTTTG-AAACACCAAAATTTTTTAAAAACACA-AAGATTTTCGAAACACAATAT
1 TTTTTGAAAACACGAAAA-ATTTTGAAAACA-AGAAAATTTTCGAAACACAATAT
* * * * *
34858 TTTTTGAAAACACGAAAAATTTTGAAAATAAGGAAATTTTCGATACAGGAGAATTT
1 TTTTTGAAAACACGAAAAATTTTGAAAACAAGAAAATTTTCGA-A-A-CACAATAT
* * *
34914 TTTTTG---ACACGAAAAATTTTGAAAACACGAAAATTTTTGAAACACGAGAAAT
1 TTTTTGAAAACACGAAAAATTTTGAAAACAAGAAAATTTTCGAAACAC-A-ATAT
*
34966 TTTTTTAAAACACGA
1 TTTTTGAAAACACGA
34981 TTTTTTTAAA
Statistics
Matches: 95, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
50 1 0.01
51 2 0.02
52 9 0.09
53 54 0.57
54 11 0.12
55 7 0.07
56 11 0.12
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (53 bp):
TTTTTGAAAACACGAAAAATTTTGAAAACAAGAAAATTTTCGAAACACAATAT
Found at i:34941 original size:18 final size:17
Alignment explanation
Indices: 34920--34968 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
34910 ATTTTTTTTG
34920 ACACGAAAAATTTTGAAA
1 ACACGAAAAATTTTG-AA
*
34938 ACACGAAAATTTTTGAA
1 ACACGAAAAATTTTGAA
*
34955 ACACGAGAAATTTT
1 ACACGAAAAATTTT
34969 TTTAAAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (17 bp):
ACACGAAAAATTTTGAA
Found at i:34969 original size:18 final size:17
Alignment explanation
Indices: 34718--35014 Score: 122
Period size: 18 Copynumber: 16.8 Consensus size: 17
34708 CACGAGGATT
*
34718 TTTTTGAAACATGAAAA
1 TTTTTGAAACACGAAAA
* *
34735 -TTTAGAAACACCG-AAG
1 TTTTTGAAACA-CGAAAA
*
34751 TTTTTGAAAGCACGAAGA
1 TTTTTGAAA-CACGAAAA
*
34769 TTTTTTAAATCATCTG--AA
1 TTTTTGAAA-CA-C-GAAAA
* *
34787 TTTTTAGAAACGCGGAAA
1 TTTTT-GAAACACGAAAA
*
34805 TTTTTGAAACACCAAAA
1 TTTTTGAAACACGAAAA
*
34822 TTTTTTAAAAACAC-AAAGA
1 -TTTTT-GAAACACGAAA-A
* *
34841 TTTTCGAAACAC-AATAT
1 TTTTTGAAACACGAA-AA
34858 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
* * * *
34876 ATTTTGAAAATAAGGAAA
1 TTTTTG-AAACACGAAAA
* * * *
34894 TTTTCGATACAGGAGAAT
1 TTTTTGAAACACGA-AAA
***
34912 TTTTTTTGACACGAAAA
1 TTTTTGAAACACGAAAA
*
34929 ATTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
34947 TTTTTGAAACACGAGAAA
1 TTTTTGAAACACGA-AAA
* **
34965 TTTTTTTAAAACACG-ATT
1 --TTTTTGAAACACGAAAA
* **
34983 TTTTTAAAACACGGGAA
1 TTTTTGAAACACGAAAA
35000 TTTTTGAAAACACGA
1 TTTTTG-AAACACGA
35015 TTTTATATTC
Statistics
Matches: 208, Mismatches: 50, Indels: 43
0.69 0.17 0.14
Matches are distributed among these distances:
16 25 0.12
17 56 0.27
18 101 0.49
19 13 0.06
20 13 0.06
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:34984 original size:34 final size:32
Alignment explanation
Indices: 34920--35051 Score: 90
Period size: 34 Copynumber: 3.9 Consensus size: 32
34910 ATTTTTTTTG
* * *
34920 ACACGAAAAATTTTGAAAACACGAAAATTTTTGAA
1 ACACGGAAATTTTTGAAAACACG---ATTTTTAAA
*
34955 ACACGAGAAATTTTTTTAAAACACGATTTTTTTAAA
1 ACACG-GAAA-TTTTTGAAAACACGA--TTTTTAAA
* *
34991 ACACGGGAATTTTTGAAAACACGA-TTTTATAT
1 ACACGGAAATTTTTGAAAACACGATTTTTA-AA
*
35023 TCAC-GAGAATTTTTG-AAACACGGATTTTT
1 ACACGGA-AATTTTTGAAAACAC-GATTTTT
35052 TTTAAAAGAA
Statistics
Matches: 80, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
31 12 0.15
32 14 0.17
33 4 0.05
34 15 0.19
35 8 0.10
36 15 0.19
37 12 0.15
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (32 bp):
ACACGGAAATTTTTGAAAACACGATTTTTAAA
Found at i:34985 original size:16 final size:16
Alignment explanation
Indices: 34964--35018 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
34954 AACACGAGAA
34964 ATTTTTTTAAAACACG
1 ATTTTTTTAAAACACG
34980 ATTTTTTTAAAACACGGG
1 ATTTTTTTAAAACAC--G
* *
34998 AATTTTTGAAAACACG
1 ATTTTTTTAAAACACG
35014 ATTTT
1 ATTTT
35019 ATATTCACGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 20 0.59
18 14 0.41
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (16 bp):
ATTTTTTTAAAACACG
Found at i:35038 original size:32 final size:33
Alignment explanation
Indices: 34920--35050 Score: 106
Period size: 32 Copynumber: 3.8 Consensus size: 33
34910 ATTTTTTTTG
* * *
34920 ACACGAAAAATTTTGAAAACACGAAAATTTT-TGAA
1 ACACGAGAATTTTTGAAAACACG---ATTTTATAAA
* *
34955 ACACGAGAAATTTTTTTAAAACACGATTTTTTTAAA
1 ACACGAG-AA-TTTTTGAAAACACGA-TTTTATAAA
* *
34991 ACACGGGAATTTTTGAAAACACGATTTTAT-AT
1 ACACGAGAATTTTTGAAAACACGATTTTATAAA
*
35023 TCACGAGAATTTTTG-AAACACGGATTTT
1 ACACGAGAATTTTTGAAAACAC-GATTTT
35051 TTTTAAAAGA
Statistics
Matches: 81, Mismatches: 10, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
31 6 0.07
32 20 0.25
33 5 0.06
34 15 0.19
35 12 0.15
36 11 0.14
37 12 0.15
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (33 bp):
ACACGAGAATTTTTGAAAACACGATTTTATAAA
Found at i:35772 original size:14 final size:14
Alignment explanation
Indices: 35749--35779 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35739 CTGCTGCTTC
*
35749 TTTCTTCTTCTTTT
1 TTTCTGCTTCTTTT
35763 TTTCTGCTTCTTTT
1 TTTCTGCTTCTTTT
35777 TTT
1 TTT
35780 GCTTTGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTCTGCTTCTTTT
Found at i:35925 original size:22 final size:21
Alignment explanation
Indices: 35896--35964 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 21
35886 TCTTTTTATT
35896 TTTTTATTTTCTTTTCTTTCC
1 TTTTTATTTTCTTTTCTTTCC
*
35917 TTTTCTA-TTT-TTTTCTCTCC
1 TTTT-TATTTTCTTTTCTTTCC
35937 TTTTT-TCTTTCTTTTTCTTTCTC
1 TTTTTAT-TTTC-TTTTCTTTC-C
35960 TTTTT
1 TTTTT
35965 CTTCTCTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 1 0.03
20 16 0.40
21 7 0.17
22 10 0.25
23 6 0.15
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTATTTTCTTTTCTTTCC
Found at i:35930 original size:20 final size:20
Alignment explanation
Indices: 35903--36012 Score: 73
Period size: 22 Copynumber: 5.1 Consensus size: 20
35893 ATTTTTTTAT
35903 TTTC-TTTTCTTTCCTTTTC
1 TTTCTTTTTCTTTCCTTTTC
*
35922 TATT-TTTTTCTCTCCTTTTTTC
1 T-TTCTTTTTCTTTCC--TTTTC
35944 TTTCTTTTTCTTTCTCTTTTTC
1 TTTCTTTTTCTTTC-C-TTTTC
*
35966 TTCTCTCTTTTTCTTCTCTTTTTTCC
1 -T-T-TCTTTTTCTT-TC-CTTTT-C
*
35992 TTTCTTTTTC-TTCCTCTTC
1 TTTCTTTTTCTTTCCTTTTC
36011 TT
1 TT
36013 CGGGCCGAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 22
0.74 0.05 0.22
Matches are distributed among these distances:
19 4 0.05
20 14 0.19
21 4 0.05
22 22 0.29
23 10 0.13
24 2 0.03
25 15 0.20
26 4 0.05
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTCTTTTTCTTTCCTTTTC
Found at i:35942 original size:12 final size:12
Alignment explanation
Indices: 35925--35984 Score: 50
Period size: 13 Copynumber: 4.8 Consensus size: 12
35915 CCTTTTCTAT
35925 TTTTTTCTCTCC
1 TTTTTTCTCTCC
*
35937 TTTTTTCT-TTC
1 TTTTTTCTCTCC
* *
35948 TTTTTCTTTCTCT
1 TTTTT-TCTCTCC
*
35961 TTTTCTTCTCTCT
1 TTTT-TTCTCTCC
35974 TTTTCTTCTCT
1 TTTT-TTCTCT
35985 TTTTTCCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 7 0.17
12 10 0.25
13 22 0.55
14 1 0.03
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTTCTCTCC
Found at i:35942 original size:13 final size:13
Alignment explanation
Indices: 35924--36009 Score: 96
Period size: 12 Copynumber: 7.2 Consensus size: 13
35914 TCCTTTTCTA
35924 TTTTT-TTCTCTC
1 TTTTTCTTCTCTC
* *
35936 CTTTT-TTCTTTC
1 TTTTTCTTCTCTC
35948 TTTTTCTT-TCTC
1 TTTTTCTTCTCTC
35960 TTTTTCTTCTCTC
1 TTTTTCTTCTCTC
35973 TTTTTCTTCTCT-
1 TTTTTCTTCTCTC
*
35985 TTTTTC--CTTTC
1 TTTTTCTTCTCTC
35996 TTTTTCTTC-CTC
1 TTTTTCTTCTCTC
36008 TT
1 TT
36010 CTTCGGGCCG
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
10 3 0.05
11 6 0.10
12 35 0.56
13 19 0.30
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTTCTTCTCTC
Found at i:35943 original size:37 final size:37
Alignment explanation
Indices: 35902--36004 Score: 108
Period size: 37 Copynumber: 2.8 Consensus size: 37
35892 TATTTTTTTA
*
35902 TTTTCTTTTCTTTCCTTT-TCTATTTTTTTCTCTCCTT
1 TTTTCTTTTCTTTCCTTTCTCT-TTTTCTTCTCTCCTT
* *
35939 TTTTC-TTTCTTTTTCTTTCTCTTTTTCTTCTCTCTTT
1 TTTTCTTTTC-TTTCCTTTCTCTTTTTCTTCTCTCCTT
35976 TTCTTCTCTTT-TTTCC-TT-TCTTTTTCTTC
1 TT-TTCT-TTTCTTTCCTTTCTCTTTTTCTTC
36005 CTCTTCTTCG
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
36 15 0.26
37 29 0.51
38 10 0.18
40 3 0.05
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (37 bp):
TTTTCTTTTCTTTCCTTTCTCTTTTTCTTCTCTCCTT
Found at i:35962 original size:48 final size:48
Alignment explanation
Indices: 35902--36009 Score: 134
Period size: 47 Copynumber: 2.3 Consensus size: 48
35892 TATTTTTTTA
*
35902 TTTTCTTT-TCTTTCCTT-TTCTATTTTTTTC-TCTCCTTTTTT-CTTTCT
1 TTTTCTTTCTCTTT--TTCTTCTATCTTTTTCTTCT-CTTTTTTCCTTTCT
*
35949 TTTTCTTTCTCTTTTTCTTCTCTCTTTTTCTTCTCTTTTTTCCTTTCT
1 TTTTCTTTCTCTTTTTCTTCTATCTTTTTCTTCTCTTTTTTCCTTTCT
*
35997 TTTTCTTCCTCTT
1 TTTTCTTTCTCTT
36010 CTTCGGGCCG
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
46 2 0.04
47 26 0.48
48 26 0.48
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (48 bp):
TTTTCTTTCTCTTTTTCTTCTATCTTTTTCTTCTCTTTTTTCCTTTCT
Found at i:36001 original size:11 final size:11
Alignment explanation
Indices: 35907--36000 Score: 86
Period size: 12 Copynumber: 8.3 Consensus size: 11
35897 TTTTATTTTC
*
35907 TTTTCTTTC-C
1 TTTTCTTTCTT
*
35917 TTTTCTAT-TT
1 TTTTCTTTCTT
*
35927 TTTTCTCTCCTT
1 TTTTCT-TTCTT
35939 TTTTCTTTC-T
1 TTTTCTTTCTT
35949 TTTTCTTTCTCT
1 TTTTCTTTCT-T
35961 TTTTCTTCTCTCT
1 TTTTCTT-TCT-T
35974 TTTTCTTCTCTT
1 TTTTCTT-TCTT
35986 TTTTCCTTTCTT
1 TTTT-CTTTCTT
35998 TTT
1 TTT
36001 CTTCCTCTTC
Statistics
Matches: 72, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
10 23 0.32
11 2 0.03
12 28 0.39
13 19 0.26
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:36566 original size:29 final size:30
Alignment explanation
Indices: 36533--36649 Score: 105
Period size: 30 Copynumber: 3.9 Consensus size: 30
36523 CGTAATTTTT
*
36533 AGAAAATTT-AGGATTAAAATGAAATTTAA
1 AGAAAATTTAAGGGTTAAAATGAAATTTAA
* * *
36562 TGAAAGTTTAAGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTAAGGGT-TAAAATGAAATTTAA
* *
36592 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTTAAGGGTTAAAATGAAATTTAA
* * * *
36621 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTAAGGGTTAAAATGAAATTT
36650 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.16
30 60 0.82
31 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.30
Consensus pattern (30 bp):
AGAAAATTTAAGGGTTAAAATGAAATTTAA
Found at i:36588 original size:30 final size:30
Alignment explanation
Indices: 36548--36649 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
36538 ATTTAGGATT
*
36548 AAAATGAAATTTAATGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAAGGGTC
* *
36578 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAAGGGTC
* *
36608 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAAGGGTC
*
36638 AAAATGCAATTT
1 AAAATGAAATTT
36650 TTATTTTTTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 2 0.03
30 61 0.97
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAAGGGTC
Found at i:37093 original size:54 final size:54
Alignment explanation
Indices: 36921--37141 Score: 320
Period size: 54 Copynumber: 4.0 Consensus size: 54
36911 CACGTGAACC
* *
36921 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AA
* *
36976 AAGGCTCAACTCACCTCTCGCAATATGAGTTGTTTTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTG--ATTTTTG-AAAACAGAAATTGAA
* *
37032 AAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAA
*
37086 AAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
37140 AA
1 AA
37142 TACCTCAACG
Statistics
Matches: 153, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
53 11 0.07
54 62 0.41
55 31 0.20
56 33 0.22
57 6 0.04
58 10 0.07
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
Found at i:37123 original size:111 final size:110
Alignment explanation
Indices: 36921--37123 Score: 327
Period size: 110 Copynumber: 1.8 Consensus size: 110
36911 CACGTGAACC
** *
36921 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAGGCTCAAC
1 AAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT-CAAAAGGCTCAAC
*
36986 TCACCTCTCGCAATATGAGTTGTTTTTTTTGAAAAATAGAAATTAA
65 TCACCTCTCGCAATACGAGTTGTTTTTTTTGAAAAATAGAAATTAA
*
37032 AAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTCAAAAGGCTCAAC
*
37096 TCACCTCTCGCAATACGAGTTGATTTTT
65 TCACCTCTCGCAATACGAGTTGTTTTTT
37124 GAAAACAGAA
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
110 38 0.45
111 37 0.44
112 10 0.12
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (110 bp):
AAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTCAAAAGGCTCAACT
CACCTCTCGCAATACGAGTTGTTTTTTTTGAAAAATAGAAATTAA
Found at i:37180 original size:72 final size:72
Alignment explanation
Indices: 37087--37759 Score: 1056
Period size: 72 Copynumber: 9.4 Consensus size: 72
37077 AGAAATTAAA
** * *
37087 AGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
37152 TGTCTTG
66 TGTCTTG
*
37159 AGGCTCAACTCATTTCTCGCAATATGAGTT-AATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
37223 TGTCTTG
66 TGTCTTG
* *
37230 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACCTCAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAAC
37295 GTGTCTTG
65 GTGTCTTG
* * *
37303 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
*
37368 TGTCCTG
66 TGTCTTG
37375 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCA-AAATTG-AAATACCTCAA-
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAAC
37437 -TGT-TTG
65 GTGTCTTG
*
37443 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
37508 TGTCTTG
66 TGTCTTG
* *
37515 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
37580 TGTCTTG
66 TGTCTTG
* * *
37587 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAAATACCTCAGCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
* **
37652 TGCCCCG
66 TGTCTTG
* *
37659 AGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTTGAAAACA-ACAATTAAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA-AATTGAAAATACCTCAAC
37722 GTGTCTTG
65 GTGTCTTG
*
37730 AGGCTCAACTCATCTCTCGCAATATGAGTT
1 AGGCTCAACTCATTTCTCGCAATATGAGTT
37760 TATTTCCTTG
Statistics
Matches: 558, Mismatches: 34, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
67 2 0.00
68 50 0.09
69 13 0.02
70 1 0.00
71 141 0.25
72 280 0.50
73 71 0.13
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
TGTCTTG
Found at i:37608 original size:284 final size:285
Alignment explanation
Indices: 37087--37764 Score: 1139
Period size: 284 Copynumber: 2.4 Consensus size: 285
37077 AGAAATTAAA
* * *
37087 AGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAATTG-AAATACCTCAAC-
37152 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTGAAAACAGAAATTGAAATTACC
63 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTGAAAACAGAAATTGAAATTACC
37217 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTG
128 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTG
*
37282 AAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA
193 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA
* * * *
37347 GAAATTGAAATTACCTCAGCATGTCCTG
258 AAAATTGAAAATACCTCAGCATGCCCCG
*
37375 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAATTGAAATACCTCAA-TG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAA-CAAAATTGAAATACCTCAACTG
37439 T-TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
65 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT-AATTTTGAAAACAGAAATTGAAATTACCT
37503 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGA
129 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGA
*
37567 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAA
194 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAA
37632 AAATTGAAAATACCTCAGCATGCCCCG
259 AAATTGAAAATACCTCAGCATGCCCCG
*
37659 AGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTTGAAAACAACAATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAA-AATT-GAAATACCTCAAC-
* *
37723 TGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTTATTT
63 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTT
37765 CCTTGAAAAG
Statistics
Matches: 369, Mismatches: 14, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
282 3 0.01
283 14 0.04
284 170 0.46
285 86 0.23
286 7 0.02
287 43 0.12
288 44 0.12
289 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (285 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAAAATTGAAATACCTCAACTGT
CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTGAAAACAGAAATTGAAATTACCTCA
ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAA
ATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAA
ATTGAAAATACCTCAGCATGCCCCG
Done.