genome.fa.s246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2957
Parameters: 2 7 7 80 10 50 1000
Length:  77652

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1677--1755	36	2.2	37	86	6	108	26	29	18	25	1.98
1869--2157	47	6.2	47	88	4	390	29	28	8	33	1.88
1918--2156	95	2.5	93	91	3	383	30	27	7	33	1.86
2121--2188	31	2.2	31	97	0	127	26	32	10	30	1.90
2074--2234	78	2.1	78	92	2	270	29	28	9	32	1.88
2026--2282	125	2.0	126	94	2	455	29	28	8	32	1.88
2152--2336	47	4.0	47	94	2	329	30	29	8	31	1.87
2152--2336	92	2.0	92	96	2	343	30	29	8	31	1.87
1979--2327	173	2.0	170	93	2	601	29	28	8	32	1.87
1933--2335	220	1.8	218	94	2	675	30	28	8	32	1.87
5855--6014	40	4.0	40	83	3	171	26	26	21	25	1.99
6355--6433	29	2.7	29	86	5	106	27	32	15	24	1.95
6415--6517	43	2.4	43	95	0	188	27	34	14	23	1.94
9045--9359	39	8.1	39	91	0	504	20	25	30	23	1.99
15460--15585	46	2.7	46	96	0	225	20	22	27	29	1.98
17167--17279	59	1.9	59	96	0	208	39	19	8	31	1.82
17168--17260	27	3.3	27	66	24	73	40	18	8	32	1.81
19519--19564	23	2.1	22	88	11	69	34	10	13	41	1.79
23009--23263	55	4.8	52	77	8	205	36	15	25	22	1.93
23017--23216	108	1.8	110	83	4	271	34	16	26	23	1.95
23332--23376	23	1.9	24	95	4	83	44	11	22	22	1.84
23455--23485	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30744--30998	55	4.8	54	77	11	235	36	17	25	20	1.94
32530--32628	47	2.1	47	96	0	180	23	7	37	32	1.82
34559--34733	46	3.8	46	73	13	151	29	30	18	20	1.97
34566--34737	93	1.8	93	89	0	272	29	30	19	20	1.97
49652--49915	56	4.7	56	89	3	363	32	23	15	28	1.95
49652--49915	113	2.3	112	87	3	370	32	23	15	28	1.95
49708--49942	112	2.1	114	84	4	316	34	22	14	28	1.93
52109--52165	29	2.0	29	92	0	96	29	14	24	31	1.94
56738--56786	24	2.0	24	100	0	98	22	12	8	57	1.61
62594--62653	30	2.0	30	90	0	93	28	25	8	38	1.84
70811--71245	47	9.3	47	83	7	557	29	29	8	32	1.87
70811--71245	93	4.7	94	83	8	557	29	29	8	32	1.87
74664--74934	78	3.5	78	90	6	412	25	26	23	24	2.00
74610--74943	40	8.7	40	83	10	414	25	27	23	24	2.00
74610--74943	116	2.9	117	85	9	422	25	27	23	24	2.00
77186--77241	25	2.2	26	90	9	98	37	26	0	35	1.57
77215--77635	47	8.8	48	83	12	523	30	28	8	32	1.87
77213--77643	50	9.1	47	82	13	528	30	28	8	32	1.87
77213--77643	143	3.0	142	84	11	580	30	28	8	32	1.87

Tables:   1

The End!