Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2343

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17379
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32


Found at i:16087 original size:39 final size:40

Alignment explanation


    Indices: 15939--16118  Score: 269
    Period size: 40  Copynumber: 4.6  Consensus size: 40

      15929 TATTCGGATG

                                    *               
      15939 ATATCC-GGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT

                                        *           
      15978 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT

                                                    
      16018 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT

                *         *                 *        
      16058 ATATTCGGGC-AAGACCCGAAGGCATTTGTGCGAGTTG-CT
          1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT

                         *         
      16097 ATATCC-GGCTAATTCCCGAAGG
          1 ATATCCGGGCTAAGTCCCGAAGG

      16119 TACTTGGGTT


Statistics
Matches: 129,  Mismatches: 9, Indels: 6
        0.90            0.06        0.04

Matches are distributed among these distances:
  38    3  0.02
  39   45  0.35
  40   81  0.63

ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27


Consensus pattern (40 bp):   
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Done.