Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2715
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41605
ACGTcount: A:0.22, C:0.31, G:0.41, T:0.06
Found at i:139 original size:42 final size:42
Alignment explanation
Indices: 93--341 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
83 ACTTTAGCTT
93 TGGTGCT-GAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCG-AGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
135 TGGTGCTCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* ** * *
177 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCG-
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* *
218 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
260 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
303 TGGTGGCT-GAGGCTCCCACACATCCGAGCCACCAAGGTG
1 TGGT-GCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTG
342 ATGGAGGCTC
Statistics
Matches: 174, Mismatches: 21, Indels: 23
0.80 0.10 0.11
Matches are distributed among these distances:
41 34 0.20
42 100 0.57
43 30 0.17
44 10 0.06
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.17
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:345 original size:83 final size:82
Alignment explanation
Indices: 93--345 Score: 241
Period size: 83 Copynumber: 3.0 Consensus size: 82
83 ACTTTAGCTT
93 TGGTGCT-GAAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGT-GCTCGAGGCTCCCGCA
1 TGGTGCTCG-AGGCTCCCGCACATCCAAGCACCAAGGTTGCCGATGGTGGCT-GAGGCTCCCGCA
* *
155 CATCATAGCACCGAGGTGCCGA
64 CATC-CAGCACCAAGGT--CGA
* ** * * * * *
177 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCG-TGGTGTCCGATGCTCCCGCAC
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCGATGGTGGCTGAGGCTCCCGCAC
239 ATCCATGCACCAAGGTGCCGA
65 ATCCA-GCACCAAGGT--CGA
* * *
260 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGGCTGAGGCTCCCACACA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCGATGGTGGCTGAGGCTCCCGCACA
325 TCCGAGCCACCAAGGT-GA
66 TCC-AG-CACCAAGGTCGA
343 TGG
1 TGG
346 AGGCTCTTGT
Statistics
Matches: 138, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
82 1 0.01
83 67 0.49
84 37 0.27
85 23 0.17
86 10 0.07
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (82 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCGATGGTGGCTGAGGCTCCCGCACA
TCCAGCACCAAGGTCGA
Found at i:8311 original size:43 final size:43
Alignment explanation
Indices: 8241--8333 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 43
8231 TCTTCTTTAG
*
8241 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* *
8285 CCCGCACAT-CCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
8327 CCCGCAC
1 CCCGCAC
8334 CTCCTAGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 19 0.41
43 18 0.39
44 9 0.20
ACGTcount: A:0.19, C:0.40, G:0.28, T:0.13
Consensus pattern (43 bp):
CCCGCACATCCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:8355 original size:25 final size:25
Alignment explanation
Indices: 8321--8369 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8311 GATGGTGTCC
* *
8321 GAGGCTCCCGCACCTCCTAGCCACT
1 GAGGCTCCCGCACATCCGAGCCACT
8346 GAGGCTCCCGCACATCCGAGCCAC
1 GAGGCTCCCGCACATCCGAGCCAC
8370 CAAGGTGCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.12
Consensus pattern (25 bp):
GAGGCTCCCGCACATCCGAGCCACT
Found at i:8394 original size:43 final size:41
Alignment explanation
Indices: 8346--9385 Score: 766
Period size: 43 Copynumber: 24.6 Consensus size: 41
8336 CCTAGCCACT
* * *
8346 GAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCC
1 GAGGCTCCCGCACA-CCAAG-CGCCTAGGTGCCGATGGTGCCC
*
8389 GAGGCTCCCGCACGACC-A------AGG-GCCGATGGTGGCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAGGTGCCGATGGTGCCC
* * ** *
8423 GAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTA-GGTGCCGATGGTGCCC
* * * * *
8466 GAGCCTCTCGCATGACCAAGGGTCTAGGTTGCCGATGGTGCCC
1 GAGGCTCCCGCA-CACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * * * * *
8509 GAGGTTCCGGCACATCCAAGCACCAAGGTGTCGATGGTGCTC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGGTGCCGATGGTGCCC
* * *
8551 GAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAG-GTGCCGATGGTGCCC
* * * * *
8594 GAGGCTCCCGCACATCCCAGCACCTAGGAGCCAATGGTGGCC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGGTGCCGATGGTGCCC
* **
8636 GAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTA-GGTGCCGATGGTGCCC
* * *
8679 GAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAG-GTGCCGATGGTGCCC
* * * * *
8722 GAGCCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCGC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * * * * *
8765 GAGGTTCTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGGTGCCGATGGTGCCC
* * ** *
8807 GAGGCTCCCGCACGCCAAGGGCCTAGGTTGCCGACAGTGTCC
1 GAGGCTCCCGCACACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * * * *
8849 GAGGCTCCCGCCCATCATAGCACCGAGGTGCCGATGGTGGCC
1 GAGGCTCCCGCACACCA-AGCGCCTAGGTGCCGATGGTGCCC
* * *
8891 GAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAG-GTGCCGATGGTGCCC
* ** *
8934 GAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGGCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTA-GGTGCCGATGGTGCCC
* * *
8977 GAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAG-GTGCCGATGGTGCCC
* * * * *
9020 GAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * * * *
9063 GAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGGTGCCGATGGTGCCC
* ** *
9105 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * *
9148 GAGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTGCCC
1 GAGGCTCCCGCACACCA-AGCGCCTAGGTGCCGATGGTGCCC
* *
9190 GAGGCTACCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 GAGGCTCCCGCAC-ACCAAGCGCCTAGG-TGCCGATGGTGCCC
* * * *
9233 GAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGGTGCCGATGGTGCCC
* * * * * *
9275 GAGGCTCCAGGCATACCAAGGGCTTAGTTTGCCGATGGTGTCC
1 GAGGCTCC-CGCACACCAAGCGCCTAG-GTGCCGATGGTGCCC
* * * *
9318 GGGGCTCCTGCACATCCTAGCACC-AGGTTGCCGATGGTGCCC
1 GAGGCTCCCGCACA-CCAAGCGCCTAGG-TGCCGATGGTGCCC
*
9360 GAGGCTCCCGCACGACCAAGGGCCTA
1 GAGGCTCCCGCAC-ACCAAGCGCCTA
9386 TGCTACCGGA
Statistics
Matches: 795, Mismatches: 161, Indels: 82
0.77 0.16 0.08
Matches are distributed among these distances:
34 28 0.04
35 4 0.01
41 11 0.01
42 275 0.35
43 476 0.60
44 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (41 bp):
GAGGCTCCCGCACACCAAGCGCCTAGGTGCCGATGGTGCCC
Found at i:8416 original size:34 final size:34
Alignment explanation
Indices: 8368--8446 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
8358 CATCCGAGCC
*
8368 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
1 ACCAAGG-GCCGATGGTGCCCGAGGCCCCCGCACG
*
8403 ACCAAGGGCCGATGGTGGCCGAGGCCCCCGCACG
1 ACCAAGGGCCGATGGTGCCCGAGGCCCCCGCACG
8437 ACCAAGGGCC
1 ACCAAGGGCC
8447 TATTTTACCG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.19, C:0.38, G:0.35, T:0.08
Consensus pattern (34 bp):
ACCAAGGGCCGATGGTGCCCGAGGCCCCCGCACG
Found at i:8596 original size:128 final size:128
Alignment explanation
Indices: 8375--9385 Score: 895
Period size: 128 Copynumber: 8.0 Consensus size: 128
8365 GCCACCAAGG
*
8375 TGCCGATGGTGCCCGAGGCTCCCG--C-A-C--G-ACCAAGG-GCCGATGGTGGC-CGAGGCCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGT-GCTCGAGGCTCC
* * * * * *
8431 CGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGCCTCTCGCATGACCAAGGGTCTAGGT
65 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
8495 TGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
* * **
8559 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG-
65 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * ** *** *
8622 AGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACC-AAGGTGCCGATGGTGCTCGAGGCTCC
* * *
8687 CGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
8751 TGTCGATGGTGCGCGAGGTTCTCGGAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
* ** * * * ** *
8815 CGCACG-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGC-CCATCATAGCACCGAGG-
65 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGT
* ** * *
8877 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTG-TCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAG-GTGCCGATGGTGCT-CGAGGCTC
* * * *
8941 CCGCACGACCAAGGGCCTATTTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
64 CCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** * * * * *
9006 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCC
** * * *
9071 CGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
65 CGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * * *
9134 TGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAGGTGCCGATGGTGCCCGAGGCTAC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
* * ** *
9198 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG-
65 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * ** ** * *
9261 TGCCGATGGCGCCCGAGGCTCCAGGCA-TACCAAGGGCTTAGTTTGCCGATGGTG-TCCGGGGCT
1 TGCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGCACCAAG-GTGCCGATGGTGCT-CGAGGCT
* * ** *
9324 CCTGCAC-ATCCTAGCACC-AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
63 CCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
9386 TGCTACCGGA
Statistics
Matches: 713, Mismatches: 143, Indels: 63
0.78 0.16 0.07
Matches are distributed among these distances:
120 22 0.03
122 2 0.00
124 1 0.00
126 36 0.05
127 202 0.28
128 351 0.49
129 99 0.14
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (128 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
GCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:8944 original size:298 final size:298
Alignment explanation
Indices: 8580--9314 Score: 1165
Period size: 298 Copynumber: 2.5 Consensus size: 298
8570 GGGCCTAGTT
* * ** ** * *
8580 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGGAGCCAATGGTGGCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCC
8644 CGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTT
65 CGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTT
* *
8709 GCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCGCGAGGTTCTC
130 GCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCTC
*
8774 GGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACG-CCAAGGGCCTAGGTTGC
195 GCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
8838 CGACAGTGTCCGAGGCTCCCGCCCATCATAGCACCGAGG
260 CGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGG
* *
8877 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-TTGCCGATGGTGCCCGAGGCTCC
*
8942 CGCACGACCAAGGGCCTATTTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCTTAGTTT
65 CGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTT
9007 GCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCTC
130 GCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCTC
9072 GCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
195 GCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
9137 CGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGG
260 CGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGG
*
9176 TGCCGATGGTGCCCGAGGCTACCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTGCCCGAGGCTCC
* ** * ** * * *
9241 CGCAC-ATCGAAGCACCGA-GGTGCCGATGGCGCCCGAGGCTCCAGGCA-TACCAAGGGCTTAGT
65 CGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCTTAGT
9303 TTGCCGATGGTG
128 TTGCCGATGGTG
9315 TCCGGGGCTC
Statistics
Matches: 406, Mismatches: 26, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
297 35 0.09
298 240 0.59
299 130 0.32
300 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (298 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTG
CCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCTCG
CACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
GACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGG
Found at i:9378 original size:85 final size:86
Alignment explanation
Indices: 8410--9385 Score: 851
Period size: 85 Copynumber: 11.5 Consensus size: 86
8400 ACGACCAAGG
* * ** * * *
8410 GCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGCCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ***
8475 GCATGA-CCAAGGGTCTAGGTT
66 GCA-CATCCAAGCACCTAGGTT
* * ** * * *
8496 GCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCTCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** *
8559 CGCACGA-CCAAGGGCCTAGTTT
65 CGCAC-ATCCAAGCACCTAGGTT
* * ** * * *
8581 GCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG-AGCCAATGGTGGCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** **
8644 CGCACGA-CCAAGGGCCTATTTT
65 CGCAC-ATCCAAGCACCTAGGTT
* * * *
8666 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
**
8731 GCACGA-CCAAGGGCCTAGGTT
66 GCAC-ATCCAAGCACCTAGGTT
* * * * * ** * *
8752 GTCGATGGTGCGCGAGGTTCTCGGAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* **
8815 CGCAC-GCCAAGGGCCTAGGTT
65 CGCACATCCAAGCACCTAGGTT
** * * * ** * *
8836 GCCGACAGTGTCCGAGGCTCCCGC-CCATCATAGCACCGAGG-TGCCGATGGTGGCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** *
8899 CGCACGA-CCAAGGGCCTAGTTT
65 CGCAC-ATCCAAGCACCTAGGTT
* ** *
8921 GCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGGCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
** * *
8986 GCACGA-CCAAGGGCTTAGTTT
66 GCAC-ATCCAAGCACCTAGGTT
* * * * * *
9007 GCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACGCGAGGTTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
*
9072 GCACATCCAAGCACCAAGG-T
66 GCACATCCAAGCACCTAGGTT
* ** *
9092 GCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
*
9157 GCACAT-CATAGCACCGAGG-T
66 GCACATCCA-AGCACCTAGGTT
*
9177 GCCGATGGTGCCCGAGGCTACCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
9242 GCACATCGAAGCACCGAGG-T
66 GCACATCCAAGCACCTAGGTT
* * * * * * *
9262 GCCGATGGCGCCCGAGGCTCCAGGCA-TACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCC
1 GCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
9326 TGCACATCCTAGCACC-AGGTT
65 CGCACATCCAAGCACCTAGGTT
9347 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
9386 TGCTACCGGA
Statistics
Matches: 748, Mismatches: 124, Indels: 37
0.82 0.14 0.04
Matches are distributed among these distances:
83 3 0.00
84 74 0.10
85 456 0.61
86 215 0.29
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (86 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACATCCAAGCACCTAGGTT
Found at i:9466 original size:24 final size:24
Alignment explanation
Indices: 9390--9468 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
9380 GGCCTATGCT
* *
9390 ACCGGAACGGTTCACCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
9414 GA-CGGGACGGTTCGCCGGAGCACC
1 -ACCGGGACGGTTCGCCGGAGCACC
* *
9438 GCCGGGACGGATCGCCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
9462 ACCGGGA
1 ACCGGGA
9469 ACCTAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.38, T:0.06
Consensus pattern (24 bp):
ACCGGGACGGTTCGCCGGAGCACC
Found at i:9732 original size:42 final size:42
Alignment explanation
Indices: 9677--9926 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
9667 ACTTTAGCTT
9677 TGGTGCT-GAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCG-AGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
9719 TGGTGCTCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* ** * * *
9761 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGG
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* *
9803 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
9845 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
9888 TGGTGGCT-GAGGCTCCCACACATCCGAGCCACCAAGGTG
1 TGGT-GCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTG
9927 ATGGAGGCTC
Statistics
Matches: 174, Mismatches: 23, Indels: 21
0.80 0.11 0.10
Matches are distributed among these distances:
41 14 0.08
42 108 0.62
43 42 0.24
44 10 0.06
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.17
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:13740 original size:25 final size:27
Alignment explanation
Indices: 13712--13765 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
13702 CCGAGCGGCG
*
13712 GACC-GGCGC-GCGCCGGGCCACAGCC
1 GACCGGGCGCAGCGCCGGCCCACAGCC
*
13737 GACCGGGGCGCAGCGCCGGCCCCCAGCC
1 GACC-GGGCGCAGCGCCGGCCCACAGCC
13765 G
1 G
13766 CGGCCCGCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
27 5 0.21
28 15 0.62
ACGTcount: A:0.11, C:0.48, G:0.41, T:0.00
Consensus pattern (27 bp):
GACCGGGCGCAGCGCCGGCCCACAGCC
Found at i:14676 original size:27 final size:29
Alignment explanation
Indices: 14646--14701 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
14636 GACGGGCCCC
*
14646 GGCGGGCGGGGCGAGGC-CGGGG-CGCGA
1 GGCGCGCGGGGCGAGGCGCGGGGCCGCGA
* *
14673 GGCGCGCGGGGGGGGGCGCGGGGCCGCGA
1 GGCGCGCGGGGCGAGGCGCGGGGCCGCGA
14702 AGAGGGGGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.58
28 5 0.21
29 5 0.21
ACGTcount: A:0.05, C:0.27, G:0.68, T:0.00
Consensus pattern (29 bp):
GGCGCGCGGGGCGAGGCGCGGGGCCGCGA
Found at i:17854 original size:40 final size:43
Alignment explanation
Indices: 17765--18863 Score: 603
Period size: 41 Copynumber: 26.2 Consensus size: 43
17755 CGCGGCGGGA
*
17765 GCCCGCACAGCCCAGGCACCAAGGGGCCGAGGGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
17808 GCCCGCACAG-CCAAGCACCAA-GGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * ** * * * * *
17848 GCCCGCACCG-CCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGG
1 GCCCGCACAGCCCAAG-CACCAAGG-GGCCG---AG--GGGGC-CCGAGGC
* * *
17898 GCCGAGGGGGCCCGAGGCGCC-CGCACGACCAAG-GGCCGAGGGGG-CCGAGGC
1 GCC-----CGCAC-A-GC-CCAAGCAC---CAAGGGGCCGAGGGGGCCCGAGGC
* * ** * *
17949 CCCCGCAC-GACCAAGGGCCGAGGGGACCGAGGGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCACCAAGGGG-CCGAGGGGGCCCGAGGC
* * *** * *
17992 GCGCGCAC-GACCAAGGGGCGAGGGGCCGAGGGGGCCCGAGGG
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* *
18034 GCCGGCACAG-CCAAGCACCAAGGGG-CGAGGGGGCGCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** *
18075 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * *
18116 GCCCGCACAGCCC-AGCACCGAGGAGCCAAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** *
18157 GCCCGCAC-GACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGGCCGAGGGGGCCCGAGGC
* ** ** *
18200 GCCCGCAC-GACCAAGGGCGGAGGGGCCGA-GGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * ** * * * *
18241 GCGCGCAC-GACCAAGGGCCGAGGGGGCGAGGGGGCGCGAGGG
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * *
18283 GCGCGGACAG-CCAAGCACCAAGGGGCC----GGGCGCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
** * *
18321 GCCCGCAC-G-CCAAGGGCCGAGGGGCCGACAGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGA-GGGGGCCCGAGGC
* *
18362 GCCCGCCCAG--CAGAGCACCGA-GGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCA-AGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** *
18402 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** *
18443 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** ** *
18484 GCCCGCAC-GACCAAGGGCGGAGGGGCCGA-GGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * ** * * * *
18525 GCGCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGACGCGAGGG
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* *
18567 GCGCGCACAG-CCAAGCACCAAGGGGCCGAGGGGGCGCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* ** * *
18609 GCCCGCAC-GACCAAGGGCCGAGGGGGCCGACAGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGGCCGA-GGGGGCCCGAGGC
*
18652 GCCCGCACAG--CAGAGCACCGA-GGGCCGA-GGGGCCCGAGGC
1 GCCCGCACAGCCCA-AGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * ** *
18692 GACCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * *
18734 GCCCGCACAG-CGAAGCACCGA-GGGCCGAGGGCGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* * * ** ** *
18775 GCCAG-GCAGACCAAGGGCGGAGGGGCCGAGGGGG-CCGGGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
* *
18816 GCCGGCACAG-CCGAGCACC-AGGGGCCGA-GGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
18856 GCCCGCAC
1 GCCCGCAC
18864 GACCAAGGGC
Statistics
Matches: 857, Mismatches: 136, Indels: 129
0.76 0.12 0.11
Matches are distributed among these distances:
37 15 0.02
38 16 0.02
39 10 0.01
40 100 0.12
41 345 0.40
42 223 0.26
43 101 0.12
44 5 0.01
46 5 0.01
48 2 0.00
50 8 0.01
51 7 0.01
53 2 0.00
55 5 0.01
57 4 0.00
58 5 0.01
59 2 0.00
60 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.46, T:0.00
Consensus pattern (43 bp):
GCCCGCACAGCCCAAGCACCAAGGGGCCGAGGGGGCCCGAGGC
Found at i:17873 original size:25 final size:25
Alignment explanation
Indices: 17843--17891 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
17833 CGAGGGGGCC
*
17843 GAGGCGCCCGCACCGCCGAGCCACG
1 GAGGCGCCCGCACAGCCGAGCCACG
17868 GAGGCGCCCGCACAGCCGAGCCAC
1 GAGGCGCCCGCACAGCCGAGCCAC
17892 CAAGGGGCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.47, G:0.35, T:0.00
Consensus pattern (25 bp):
GAGGCGCCCGCACAGCCGAGCCACG
Found at i:17954 original size:33 final size:33
Alignment explanation
Indices: 17890--17980 Score: 146
Period size: 33 Copynumber: 2.7 Consensus size: 33
17880 CAGCCGAGCC
*
17890 ACCAAGGGGCCGAGGGGGCCCGAGGCGCCCGCACG
1 ACCAA-GGGCCGAGGGGG-CCGAGGCCCCCGCACG
17925 ACCAAGGGCCGAGGGGGCCGAGGCCCCCGCACG
1 ACCAAGGGCCGAGGGGGCCGAGGCCCCCGCACG
*
17958 ACCAAGGGCCGAGGGGACCGAGG
1 ACCAAGGGCCGAGGGGGCCGAGG
17981 GGGCCCGAGC
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 37 0.69
34 12 0.22
35 5 0.09
ACGTcount: A:0.20, C:0.35, G:0.45, T:0.00
Consensus pattern (33 bp):
ACCAAGGGCCGAGGGGGCCGAGGCCCCCGCACG
Found at i:18073 original size:41 final size:41
Alignment explanation
Indices: 17930--18878 Score: 1034
Period size: 41 Copynumber: 23.0 Consensus size: 41
17920 GCACGACCAA
*
17930 GGGCCGAGGGGGCCGAGGCCCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * *
17971 GGGACCGAGGGGGCCCGAGCCGCGCGCACGACCAAGGGGCGAG
1 GGG-CCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCCGAG
* * ** *
18014 GGGCCGAGGGGGCCCGAGGGGCCGGCAC-AGCCAAGCACCAAG
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGA-CCAAGGGCCGAG
18056 GGG-CGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGACCAAGGGCCGAG
* **
18097 GGGCCGAGGGGGCCGAGGCGCCCGCAC-AGCCCAGCACCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGA-CCAAGGGCCGAG
* *
18138 GAGCCAAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGA-G
*
18180 GGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAG
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCCGAG
* * *
18222 GGGCCGAGGGGCCCGAGCCGCGCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * * ** *
18263 GGGGCGAGGGGGCGCGAGGGGCGCGGAC-AGCCAAGCACCAAG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGA-CCAAGGGCCGAG
*
18305 GGGCC--GGGCG-CGAGGCGCCCGCACG-CCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * **
18342 GGGCCGACAGGGGCCGAGGCGCCCGC-CCAGCAGAGCACCGA-
1 GGGCCGA-GGGGGCCGAGGCGCCCGCACGACCA-AGGGCCGAG
18383 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
18424 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
*
18465 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCGGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * *
18506 GGGCCGAGGGGCCCGAGCCGCGCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * ** *
18547 GGGCCGAGGGGACGCGAGGGGCGCGCAC-AGCCAAGCACCAAG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGA-CCAAGGGCCGAG
18589 GGGCCGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGACCAAGGGCCGA-G
* * **
18632 GGGCCGACAGGGGCCGAGGCGCCCGCAC-AGCAGAGCACCGA-
1 GGGCCGA-GGGGGCCGAGGCGCCCGCACGACCA-AGGGCCGAG
* *
18673 GGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* **
18714 GGGCCGAGGGGGCCCGAGGCGCCCGCAC-AGCGAAGCACCGA-
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGA-CCAAGGGCCGAG
* * *
18755 GGGCCGAGGGCGCCCGAGGCGCCAGGCA-GACCAAGGGCGGAG
1 GGGCCGAGGG-GGCCGAGGCGCC-CGCACGACCAAGGGCCGAG
* * * **
18797 GGGCCGAGGGGGCCGGGGCGCCGGCAC-AGCCGAGCACC-AG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGA-CCAAGGGCCGAG
*
18837 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
18878 G
1 G
18879 CGACCGGAAC
Statistics
Matches: 760, Mismatches: 109, Indels: 78
0.80 0.12 0.08
Matches are distributed among these distances:
37 14 0.02
38 11 0.01
40 93 0.12
41 354 0.47
42 199 0.26
43 84 0.11
44 5 0.01
ACGTcount: A:0.18, C:0.34, G:0.47, T:0.00
Consensus pattern (41 bp):
GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
Found at i:18423 original size:24 final size:24
Alignment explanation
Indices: 18392--18506 Score: 87
Period size: 24 Copynumber: 5.4 Consensus size: 24
18382 AGGGCCGAGG
18392 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
**
18416 GGGCCGAGG-G---GC-CGA--GG
1 GGGCCGAGGCGCCCGCACGACCAA
18433 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
**
18457 GGGCCGAGG-G---GC-CGA--GG
1 GGGCCGAGGCGCCCGCACGACCAA
18474 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
*
18498 GGGCGGAGG
1 GGGCCGAGG
18507 GGCCGAGGGG
Statistics
Matches: 68, Mismatches: 9, Indels: 28
0.65 0.09 0.27
Matches are distributed among these distances:
17 18 0.26
18 2 0.03
19 6 0.09
20 4 0.06
21 4 0.06
22 6 0.09
23 2 0.03
24 26 0.38
ACGTcount: A:0.17, C:0.34, G:0.49, T:0.00
Consensus pattern (24 bp):
GGGCCGAGGCGCCCGCACGACCAA
Found at i:18957 original size:24 final size:24
Alignment explanation
Indices: 18881--18959 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
18871 GGCCGAGGCG
* *
18881 ACCGGAACGGGGCACCGGAGCACC
1 ACCGGGACGGGGCGCCGGAGCACC
18905 GA-CGGGACGGGGCGCCGGAGCACC
1 -ACCGGGACGGGGCGCCGGAGCACC
* *
18929 GCCGGGACGGAGCGCCGGAGCACC
1 ACCGGGACGGGGCGCCGGAGCACC
18953 ACCGGGA
1 ACCGGGA
18960 ACCGAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.44, T:0.00
Consensus pattern (24 bp):
ACCGGGACGGGGCGCCGGAGCACC
Found at i:19324 original size:123 final size:124
Alignment explanation
Indices: 19166--19397 Score: 371
Period size: 123 Copynumber: 1.9 Consensus size: 124
19156 GAACGGGGGC
19166 GCCGAGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGC
1 GCCGAGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGC
* *
19231 ACAG-CAGAGCACCGAGGGGCCGAGGGGCGCCGAGGCGCCC-CACAACCAAGGGCCGAGGG
66 ACAGCCA-AGCACCAAGGGACCGAGGGG-GCCGAGGCGCCCACACAACCAAGGGCCGAGGG
* *
19290 GCCGGGGGGC-CGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGC
1 GCCGAGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGC
* *
19354 ACAGCCAAGCAGCAAGGGACCGAGGGGGCGGAGGCGCCCACACA
66 ACAGCCAAGCACCAAGGGACCGAGGGGGCCGAGGCGCCCACACA
19398 GCCGAGCCAC
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
122 11 0.11
123 78 0.78
124 11 0.11
ACGTcount: A:0.20, C:0.35, G:0.44, T:0.00
Consensus pattern (124 bp):
GCCGAGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGC
ACAGCCAAGCACCAAGGGACCGAGGGGGCCGAGGCGCCCACACAACCAAGGGCCGAGGG
Found at i:19400 original size:41 final size:42
Alignment explanation
Indices: 19166--19414 Score: 332
Period size: 42 Copynumber: 6.0 Consensus size: 42
19156 GAACGGGGGC
19166 GCCGA-GGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGG
1 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGG
*
19207 GCCGAGGGGGCGCGAGGCGCCCGCACAG-CAGAGCACCGAGGG
1 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCA-AGCACCAAGGG
* ** *
19249 GCCGA-GGGGCGCCGAGGCGCCC-CACAACCAAGGGCCGAGGG
1 GCCGAGGGGGCG-CGAGGCGCCCGCACAGCCAAGCACCAAGGG
*
19290 GCCG-GGGGGC-CGAGGCGCCCGCACAGCCAGGCACCAAGGG
1 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGG
*
19330 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGG
1 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGG
* * *
19372 ACCGAGGGGGCG-GAGGCGCCCACACAGCCGAGCCACCAAGGG
1 GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAG-CACCAAGGG
19414 G
1 G
19415 AGGGAGGCGC
Statistics
Matches: 183, Mismatches: 16, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
39 10 0.05
40 18 0.10
41 59 0.32
42 96 0.52
ACGTcount: A:0.20, C:0.35, G:0.44, T:0.00
Consensus pattern (42 bp):
GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGG
Found at i:19418 original size:81 final size:80
Alignment explanation
Indices: 19171--19425 Score: 293
Period size: 83 Copynumber: 3.1 Consensus size: 80
19161 GGGGCGCCGA
*
19171 GGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCGCGAGGCGCCCGCACAGC
1 GGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGGCCGAGGGGGCG-GAGGCGCCCGCACAGC
* * *
19236 AGAGCACCGAGGGGCCG
65 CGAGCACCAAGGGG-AG
* * * *
19253 AGGGGCGCCGAGGCGCCC-CACAACCAAG-GGCCGAGGGGCCG-GGGGGCCGAGGCGCCCGCACA
1 -GGGGCG-CGAGGCGCCCGCACAGCCAAGCAG-CAAGGGGCCGAGGGGGCGGAGGCGCCCGCACA
19315 GCC-AGGCACCAAGGGGCCGAG
63 GCCGA-GCACCAA-GGG--GAG
* *
19336 GGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGACCGAGGGGGCGGAGGCGCCCACACAGCC
1 GGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGGCCGAGGGGGCGGAGGCGCCCGCACAGCC
19401 GAGCCACCAAGGGGAG
66 GAG-CACCAAGGGGAG
19417 GGAGGCGCG
1 GG-GGCGCG
19426 GGGGCAAAAG
Statistics
Matches: 146, Mismatches: 14, Indels: 25
0.79 0.08 0.14
Matches are distributed among these distances:
80 1 0.01
81 37 0.25
82 38 0.26
83 52 0.36
84 18 0.12
ACGTcount: A:0.20, C:0.35, G:0.45, T:0.00
Consensus pattern (80 bp):
GGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGGCCGAGGGGGCGGAGGCGCCCGCACAGCC
GAGCACCAAGGGGAG
Found at i:20517 original size:22 final size:21
Alignment explanation
Indices: 20475--20517 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
20465 CCAGAGGCCC
20475 CGACGGCGGGGCGGCAAGCGGG
1 CGACGGCGGGGCGGC-AGCGGG
20497 CGACGGGCGCGGGCGGC-GCGG
1 CGAC-GGCG-GGGCGGCAGCGG
20518 CGAGCCCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.09, C:0.30, G:0.60, T:0.00
Consensus pattern (21 bp):
CGACGGCGGGGCGGCAGCGGG
Found at i:23095 original size:145 final size:146
Alignment explanation
Indices: 22815--23109 Score: 551
Period size: 145 Copynumber: 2.0 Consensus size: 146
22805 AGGGCACCAG
22815 CGGGCGGCCCGACAGGCAGGCGCGCACGCGAACCCGGCGCAGAAGAGCAAGGGCGGGCGGGCGGG
1 CGGGCGGCCCGACAGGCAGGCGCGCACGCGAACCCGGCGCAGAAGAGCAAGGGCGGGCGGGCGGG
22880 GCACCCGCGAGGGAGCCCGCCAAGCAGCGGCCGGGCGCCGGACGGGGGCGGAGCCCGGGGACGCG
66 GCACCCGCGAGGGAGCCCGCCAAGCAGCGGCCGGGCGCCGGACGGGGGCGGAGCCCGGGGACGCG
22945 CACACAGGGCAGACGC
131 CACACAGGGCAGACGC
22961 CGGGCGGGCCCGACAGGCAGGCGCGCACGCGAACCCGGCGCAGAAGAGCAAGGGCGGGC-GGCGG
1 CGGGC-GGCCCGACAGGCAGGCGCGCACGCGAACCCGGCGCAGAAGAGCAAGGGCGGGCGGGCGG
23025 GGCACCCGCGAGGGAGCCCG-CAAGCAGCGGCCGGGCGCCGGACGGGGG-GCGAGCCCGGGGACG
65 GGCACCCGCGAGGGAGCCCGCCAAGCAGCGGCCGGGCGCCGGACGGGGGCG-GAGCCCGGGGACG
23088 CGCACACAGGGCAGACGC
129 CGCACACAGGGCAGACGC
23106 CGGG
1 CGGG
23110 GCCGGGGGCA
Statistics
Matches: 147, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
144 1 0.01
145 63 0.43
146 30 0.20
147 53 0.36
ACGTcount: A:0.18, C:0.35, G:0.48, T:0.00
Consensus pattern (146 bp):
CGGGCGGCCCGACAGGCAGGCGCGCACGCGAACCCGGCGCAGAAGAGCAAGGGCGGGCGGGCGGG
GCACCCGCGAGGGAGCCCGCCAAGCAGCGGCCGGGCGCCGGACGGGGGCGGAGCCCGGGGACGCG
CACACAGGGCAGACGC
Found at i:23655 original size:28 final size:28
Alignment explanation
Indices: 23622--23675 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
23612 GCGCCAGGAG
23622 GCGGCGAGGA-CGCGAAGGGAGGCCAACC
1 GCGGCGAGGAGCGC-AAGGGAGGCCAACC
* *
23650 GCGGCGGGGAGCGCACGGGAGGCCAA
1 GCGGCGAGGAGCGCAAGGGAGGCCAA
23676 GGGCCGCCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.22, C:0.28, G:0.50, T:0.00
Consensus pattern (28 bp):
GCGGCGAGGAGCGCAAGGGAGGCCAACC
Found at i:27186 original size:25 final size:25
Alignment explanation
Indices: 27157--27205 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
27147 GGGCCGGGCC
*
27157 GAGGCGCCCGCACCGCCGAGCCACG
1 GAGGCGCCCGCACAGCCGAGCCACG
27182 GAGGCGCCCGCACAGCCGAGCCAC
1 GAGGCGCCCGCACAGCCGAGCCAC
27206 CAAGGGGCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.47, G:0.35, T:0.00
Consensus pattern (25 bp):
GAGGCGCCCGCACAGCCGAGCCACG
Found at i:27272 original size:32 final size:34
Alignment explanation
Indices: 27204--27285 Score: 141
Period size: 32 Copynumber: 2.4 Consensus size: 34
27194 CAGCCGAGCC
27204 ACCAAGGGGCCGAGGGGGCCCGAGGCGCCCGCACG
1 ACCAA-GGGCCGAGGGGGCCCGAGGCGCCCGCACG
27239 ACCAAGGGCCGAGGGGG-CCGAGGC-CCCGCACG
1 ACCAAGGGCCGAGGGGGCCCGAGGCGCCCGCACG
27271 ACCAAGGGCCGAGGG
1 ACCAAGGGCCGAGGG
27286 ACCGAGGGGG
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
32 23 0.49
33 7 0.15
34 12 0.26
35 5 0.11
ACGTcount: A:0.20, C:0.35, G:0.45, T:0.00
Consensus pattern (34 bp):
ACCAAGGGCCGAGGGGGCCCGAGGCGCCCGCACG
Found at i:27409 original size:41 final size:42
Alignment explanation
Indices: 27342--27432 Score: 141
Period size: 41 Copynumber: 2.2 Consensus size: 42
27332 CGCGGCGGGA
*
27342 GCCCGCACAGCCCAGGCACCAAGGGCC-GAGGGGCCCGAGGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGGAGGGGCCCGA-GGC
*
27384 GCCCGCACAG-CCAAGCACCAAGGGCCGGAGGGGGCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGGAGGGGCCCGAGGC
27425 GCCCGCAC
1 GCCCGCAC
27433 CGCCGAGCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 26 0.57
42 20 0.43
ACGTcount: A:0.20, C:0.41, G:0.40, T:0.00
Consensus pattern (42 bp):
GCCCGCACAGCCCAAGCACCAAGGGCCGGAGGGGCCCGAGGC
Found at i:27448 original size:25 final size:25
Alignment explanation
Indices: 27420--27468 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
27410 GGAGGGGGCC
*
27420 GAGGCGCCCGCACCGCCGAGCCACG
1 GAGGCGCCCGCACAGCCGAGCCACG
27445 GAGGCGCCCGCACAGCCGAGCCAC
1 GAGGCGCCCGCACAGCCGAGCCAC
27469 CAAGGGGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.47, G:0.35, T:0.00
Consensus pattern (25 bp):
GAGGCGCCCGCACAGCCGAGCCACG
Found at i:27533 original size:29 final size:32
Alignment explanation
Indices: 27467--27542 Score: 122
Period size: 29 Copynumber: 2.5 Consensus size: 32
27457 CAGCCGAGCC
*
27467 ACCAAGGGGCGAGGGGCCCGGGCGCCCGCACG
1 ACCAAGGGCCGAGGGGCCCGGGCGCCCGCACG
27499 ACCAAGGGCCGAGGGG-CC-GGC-CCCGCACG
1 ACCAAGGGCCGAGGGGCCCGGGCGCCCGCACG
27528 ACCAAGGGCCGAGGG
1 ACCAAGGGCCGAGGG
27543 ACCGAGGGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
29 23 0.53
30 3 0.07
31 2 0.05
32 15 0.35
ACGTcount: A:0.18, C:0.37, G:0.45, T:0.00
Consensus pattern (32 bp):
ACCAAGGGCCGAGGGGCCCGGGCGCCCGCACG
Found at i:27550 original size:265 final size:260
Alignment explanation
Indices: 27029--27553 Score: 856
Period size: 263 Copynumber: 2.0 Consensus size: 260
27019 GGCGGCAAGA
27029 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACACCAGGCAC
1 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACACCAGGCAC
27094 CAAGGCAGGGCCCGAGGGCCGGGCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGGGCCGA
66 CAA-G-AGGGCCCGA-GG-CGGGCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGGGCCGA
27159 GGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGGCC
127 GGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGGCC
27224 CGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGCCCCGCACGACCAAGGGCCGAGGGACC
192 CGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCC-AGGCCCCGCACGACCAAGGGCCGAGGGACC
27289 GAGGG
256 GAGGG
27294 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACAGCCCAGGC
1 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACA--CCAGGC
27359 ACC-A-AGGG-CCGA-G-GGGCCCGAGGGCGCCCGCACAGCCAAGCACCAA-GGGCCGGAGGGGG
64 ACCAAGAGGGCCCGAGGCGGGCCCGA-GGCGCCCGCACAGCCAAGCACCAAGGGGCC-----GGG
27418 CCGAGGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGG-CGA-GG
123 CCGAGGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGG
27481 GGCCCG-GGCGCCCGCACGACCAAGGGCCGA-GGGGCC-GGCCCCGCACGACCAAGGGCCGAGGG
188 GGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCAGGCCCCGCACGACCAAGGGCCGAGGG
27543 ACCGAGGG
253 ACCGAGGG
27551 GGC
1 GGC
27554 CCGAGCCGCG
Statistics
Matches: 252, Mismatches: 0, Indels: 24
0.91 0.00 0.09
Matches are distributed among these distances:
257 37 0.15
258 13 0.05
259 30 0.12
260 25 0.10
261 8 0.03
262 7 0.03
263 65 0.26
265 57 0.23
266 1 0.00
267 9 0.04
ACGTcount: A:0.20, C:0.37, G:0.43, T:0.00
Consensus pattern (260 bp):
GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACACCAGGCAC
CAAGAGGGCCCGAGGCGGGCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGGGCCGAGGCG
CCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGGCCCGAG
GCGCCCGCACGACCAAGGGCCGAGGGGGCCAGGCCCCGCACGACCAAGGGCCGAGGGACCGAGGG
Found at i:27650 original size:259 final size:259
Alignment explanation
Indices: 27029--27690 Score: 797
Period size: 259 Copynumber: 2.5 Consensus size: 259
27019 GGCGGCAAGA
* * * *
27029 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACA--CCAGGC
1 GGCGACCAGGAACCAGGCGACGGGCCG-AAGGGGGACACGCGGAGGGAGCCCGCACAGCCCAAGC
27092 ACCAAGGCAGGGCCCGAGGGCCGGGCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCC----G
65 ACC-A---AGGG-CCGA--G--GGGCCCGAGGCGCCCGCACAGCCAAGCACCAA-GGGCCGAGGG
27153 GGCCGAGGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAG
120 GGCCGAGGCGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAG
27218 GGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGCCCCGCACGACCAAGGGCCGA
185 GGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCC-AGGCCCCGCACGACCAAGGGCCGA
27283 GGGACCGAGGG
249 GGGACCGAGGG
* * * *
27294 GGCGACCAGGAAGCAGGCGACGGGCGGAAAGGGGGACACGCGGCGGGAGCCCGCACAGCCCAGGC
1 GGCGACCAGGAACCAGGCGACGGGCCG-AAGGGGGACACGCGGAGGGAGCCCGCACAGCCCAAGC
27359 ACCAAGGGCCGAGGGGCCCGAGGGCGCCCGCACAGCCAAGCACCAAGGGCCGGAGGGGGCCGAGG
65 ACCAAGGGCCGAGGGGCCCGA-GGCGCCCGCACAGCCAAGCACCAAGGGCC-GAGGGGGCCGAGG
27424 CGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGG-CGA-GGGGCCCG
128 CGCCCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGGCCCG
27487 -GGCGCCCGCACGACCAAGGGCCGA-GGGGCC-GGCCCCGCACGACCAAGGGCCGAGGGACCGAG
193 AGGCGCCCGCACGACCAAGGGCCGAGGGGGCCAGGCCCCGCACGACCAAGGGCCGAGGGACCGAG
27549 GG
258 GG
* *
27551 GGCCCGAGCCGCGCGCAGGACCAAGGGGCGA-GGGCCG-AGGGGG-C-C-C-GAGGG-GCCGGCA
1 GG--CGA-CC-AG-G-A--ACC-A--GGCGACGGGCCGAAGGGGGACACGCGGAGGGAGCCCGCA
* * ** *
27609 CAG-CCAAGCACCAAGGGGCGAGGGGGCGCGAGGCGCCCGCAC-GACCAAGGGCCGAGGGCCGAG
55 CAGCCCAAGCACCAAGGGCCGA-GGGGCCCGAGGCGCCCGCACAG-CCAAGCACCAAGGGCCGAG
27672 GGGGCCGAGGCGCCCGCAC
118 GGGGCCGAGGCGCCCGCAC
27691 AGCCCAGCAC
Statistics
Matches: 365, Mismatches: 11, Indels: 49
0.86 0.03 0.12
Matches are distributed among these distances:
257 36 0.10
258 36 0.10
259 73 0.20
260 44 0.12
261 13 0.04
262 9 0.02
263 67 0.18
264 1 0.00
265 65 0.18
266 2 0.01
267 14 0.04
268 5 0.01
ACGTcount: A:0.20, C:0.36, G:0.44, T:0.00
Consensus pattern (259 bp):
GGCGACCAGGAACCAGGCGACGGGCCGAAGGGGGACACGCGGAGGGAGCCCGCACAGCCCAAGCA
CCAAGGGCCGAGGGGCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGCCGAGGGGGCCGAGGCGC
CCGCACCGCCGAGCCACGGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGGCCCGAGG
CGCCCGCACGACCAAGGGCCGAGGGGGCCAGGCCCCGCACGACCAAGGGCCGAGGGACCGAGGG
Found at i:27888 original size:244 final size:243
Alignment explanation
Indices: 27445--28337 Score: 1033
Period size: 244 Copynumber: 3.7 Consensus size: 243
27435 CCGAGCCACG
* * *
27445 GAGGCGCCCGCACAGCCGAGCCACCAAGGGGCGAGGGGCCCG-GGCGCCCGCACGACC-A-----
1 GAGGCGCCCGCACAGCCGAG-CACCGAGGGCCAAGGGG-CCGAGGCGCCCGCACGACCAAGGCCG
*
27503 AGGGCCGAGGGG-CC--GGC-CCCGCACGACCAAGGGCCGA-GGGACCGAGGGGGCCCGAGCCGC
64 AGGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGCCGC
* * *
27563 GCGCAGGACCAAGGGGCGA-GGGCCGAGGGGGCCCGAGGGGC-CGGCACAGCCAAGCACCAAGGG
129 CCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGGGCGCGG-ACAGCCAAGCACCAAGGG
*
27626 GCGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGGGCCGAGGGGGCC
193 CCGA-GGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGGGCCGAGGGGGCC
*
27678 GAGGCGCCCGCACAGCCCAGCACCGAGGAGCCAAGGGGCCGAGGCGCCCGCACGACCAAGGCCGA
1 GAGGCGCCCGCACAGCCGAGCACCGAGG-GCCAAGGGGCCGAGGCGCCCGCACGACCAAGGCCGA
*
27743 GGGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGA-GGGGCCGAGGGGGCCCGAGCCGC
65 -GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGCCGC
* * *
27807 GCGCACGACCAAGGGCCGAGGGGGCGAGGGGGCGCGAGGGGCGCGGACAGCCAAGCACCAAGGGC
129 CCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGGGCGCGGACAGCCAAGCACCAAGGGC
* **
27872 CGAGGGGCGAGAGGCGCCCGCACG-CCAAGGGCCGAGGGGCCGACAGGGCC
194 CGAGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGA-GGGCCGAGGGGGCC
* * *
27922 GAGGCGCCCGCCCAGCAGAGCACCGAGGGCCGAGGGGCCGAGGCGCCCGCACGACCAAGGGCCGA
1 GAGGCGCCCGCACAGCCGAGCACCGAGGGCCAAGGGGCCGAGGCGCCCGCACGACCAA-GGCCGA
* *
27987 GGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGG-CCGAGGCGC
65 -GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGCCGC
* ** * ** *
28051 CCGCACGACCAAGGGCGGAGGGGCCGA-GGGGCCCGAGCCGCGCGCAC-GACCAAGGGCCGAGGG
129 CCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGGGCGCGGACAG-CCAAGCACC-AAGG
* * ** *
28114 GCCGAGGGGACGCGAGGGGCGCGCAC-AGCCAAGCACCAAGGGCCGAGGGGGCGC
192 GCCGAGGGG-CGCGAGGCGCCCGCACGA-CCAAGGGCCGAGGGCCGAGGGGGC-C
* ** *
28168 GAGGCGCCCGCAC-GACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCAC-AGCAGAGC
1 GAGGCGCCCGCACAG-CCGAGCACCGA-GGGCC-A-AGGGGCCGAGGCGCCCGCACGACCA-AG-
* *
28231 ACCGAGGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAG
60 GCCGAGGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAG
* * ** *
28296 GCGCCCGCAC-AGCGAAGCACCGA-GGGCCGAGGGCGCCCGAGG
125 CCGCCCGCACGA-CCAAGGGCCGAGGGGCCGAGGGGGCCCGAGG
28338 CGCCAGAGCA
Statistics
Matches: 572, Mismatches: 55, Indels: 50
0.84 0.08 0.07
Matches are distributed among these distances:
232 10 0.02
233 41 0.07
234 1 0.00
239 1 0.00
240 11 0.02
241 2 0.00
242 1 0.00
243 66 0.12
244 204 0.36
245 79 0.14
246 31 0.05
247 5 0.01
248 64 0.11
249 56 0.10
ACGTcount: A:0.19, C:0.35, G:0.46, T:0.00
Consensus pattern (243 bp):
GAGGCGCCCGCACAGCCGAGCACCGAGGGCCAAGGGGCCGAGGCGCCCGCACGACCAAGGCCGAG
GGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGCCGCCC
GCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGGGCGCGGACAGCCAAGCACCAAGGGCCG
AGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGGGCCGAGGGGGCC
Found at i:28035 original size:9 final size:9
Alignment explanation
Indices: 28021--28047 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
28011 GCACGACCAA
28021 GGGCCGAGG
1 GGGCCGAGG
28030 GGGCCGAGG
1 GGGCCGAGG
28039 GGGCCGAGG
1 GGGCCGAGG
28048 CGCCCGCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.67, T:0.00
Consensus pattern (9 bp):
GGGCCGAGG
Found at i:28097 original size:83 final size:82
Alignment explanation
Indices: 27504--28443 Score: 937
Period size: 83 Copynumber: 11.5 Consensus size: 82
27494 GCACGACCAA
* * *
27504 GGGCCGAGGGG-CC--GGC-CCCGCACGACCAAGGGCCGAGGGACCGAGGGGGCCCGAGCCGCGC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGCGCCC
* *
27565 GCAGGACCAAGGGGCGA-
65 GCACGACCAAGGGCCGAG
* * ** *
27582 GGGCCGAGGGGGCCCGAGGGGCCGGCAC-AGCCAAGCACCAAGGGG-CGAGGGGGCGCGAGGCGC
1 GGGCCGA-GGGGCCCGAGGCGCCCGCACGA-CCAAGGGCCGAGGGGCCGAGGGGGC-CGAGGCGC
27645 CCGCACGACCAAGGGCCGA-
63 CCGCACGACCAAGGGCCGAG
* * ** * *
27664 GGGCCGAGGGGGCCGAGGCGCCCGCAC-AGCCCAGCACCGAGGAGCC-AAGGGGCCGAGGCGCCC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGA-CCAAGGGCCGAGGGGCCGAGGGGGCCGAGGCGCCC
27727 GCACGACCAA-GGCCGAG
65 GCACGACCAAGGGCCGAG
* * *
27744 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGCCGAGGGGGCCCGAGCCGCGC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGCGCCC
27809 GCACGACCAAGGGCCGAG
65 GCACGACCAAGGGCCGAG
* * * * * ** * *
27827 GGGGCGAGGGGGCGCGAGGGGCGCGGAC-AGCCAAGCACC-AAGGGCCGA-GGGGCGAGAGGCGC
1 GGGCCGA-GGGGCCCGAGGCGCCCGCACGA-CCAAGGGCCGAGGGGCCGAGGGGGC-CGAGGCGC
27889 CCGCACG-CCAAGGGCCGAG
63 CCGCACGACCAAGGGCCGAG
* * * **
27908 GGGCCGACAGGG-CCGAGGCGCCCGC-CCAGCAGAGCACCGA-GGGCCGA-GGGGCCGAGGCGCC
1 GGGCCGA-GGGGCCCGAGGCGCCCGCACGACCA-AGGGCCGAGGGGCCGAGGGGGCCGAGGCGCC
27969 CGCACGACCAAGGGCCGAG
64 CGCACGACCAAGGGCCGAG
*
27988 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCGAGGCGCCC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGA-GGGGCCGAGGGGGCCGAGGCGCCC
*
28053 GCACGACCAAGGGCGGAG
65 GCACGACCAAGGGCCGAG
* * * * *
28071 GGGCCGAGGGGCCCGAGCCGCGCGCACGACCAAGGGCCGAGGGGCCGAGGGGACGCGAGGGGCGC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGC-CGAGGCGCCC
** *
28136 GCAC-AGCCAAGCACC-AA
65 GCACGA-CCAAGGGCCGAG
* *
28153 GGGCCGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCC
1 GGGCCGA-GGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGA-GGGGGCCGAGGCGCC
* **
28218 CGCAC-AGCAGAGCACCGA-
64 CGCACGACCA-AGGGCCGAG
*
28236 GGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAGGGGGCCGAGGGGGCCCGAGGCGCC
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGA-GGGGCCGAGGGGG-CCGAGGCGCC
* **
28301 CGCAC-AGCGAAGCACCGA-
64 CGCACGA-CCAAGGGCCGAG
* * *
28319 GGGCCGAGGGCGCCCGAGGCGCCAG-AGCAGACCAAGGGCGGAGGGGCCGAGGGGGCCGGGGCGC
1 GGGCCGAGGG-GCCCGAGGCGCCCGCA-C-GACCAAGGGCCGAGGGGCCGAGGGGGCCGAGGCGC
* * **
28383 CGGCAC-AGCCGAGCACC-AG
63 CCGCACGA-CCAAGGGCCGAG
28402 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGG
1 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGG
28444 CGACCGGAAC
Statistics
Matches: 738, Mismatches: 85, Indels: 75
0.82 0.09 0.08
Matches are distributed among these distances:
78 7 0.01
79 30 0.04
80 126 0.17
81 85 0.12
82 158 0.21
83 266 0.36
84 54 0.07
85 12 0.02
ACGTcount: A:0.19, C:0.34, G:0.47, T:0.00
Consensus pattern (82 bp):
GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCGAGGCGCCCG
CACGACCAAGGGCCGAG
Found at i:28189 original size:34 final size:34
Alignment explanation
Indices: 28148--28286 Score: 102
Period size: 34 Copynumber: 3.7 Consensus size: 34
28138 ACAGCCAAGC
28148 ACCAAGGGCCGAGGGGGCGCGAGGCGCCCGCACG
1 ACCAAGGGCCGAGGGGGCGCGAGGCGCCCGCACG
28182 ACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCACAGCAGAG
1 ACCAAGGGCCGAGGGG--G-C----G-CGAGGCGCCCG--CA-C---G
* * *
28230 CACCGAGGGCCGA-GGGGCCCGAGGCGACCGCACG
1 -ACCAAGGGCCGAGGGGGCGCGAGGCGCCCGCACG
28264 ACCAAGGGCCGAGGGGGC-CGAGG
1 ACCAAGGGCCGAGGGGGCGCGAGG
28287 GGGCCCGAGG
Statistics
Matches: 85, Mismatches: 4, Indels: 33
0.70 0.03 0.27
Matches are distributed among these distances:
33 16 0.19
34 22 0.26
36 1 0.01
37 2 0.02
38 2 0.02
40 10 0.12
41 1 0.01
42 11 0.13
44 2 0.02
45 2 0.02
46 1 0.01
48 4 0.05
49 11 0.13
ACGTcount: A:0.20, C:0.34, G:0.46, T:0.00
Consensus pattern (34 bp):
ACCAAGGGCCGAGGGGGCGCGAGGCGCCCGCACG
Found at i:28382 original size:42 final size:41
Alignment explanation
Indices: 27504--28443 Score: 935
Period size: 41 Copynumber: 23.0 Consensus size: 41
27494 GCACGACCAA
27504 GGGCCGA-GGGGCC--GGC-CCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * * *
27541 GGACCGAGGGGGCCCGAGCCGCGCGCAGGACCAAGGGGCGA-
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCCGAG
* * ** *
27582 GGGCCGAGGGGGCCCGAGGGGCCGGCAC-AGCCAAGCACCAAG
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGA-CCAAGGGCCGAG
27624 GGG-CGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGA-
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGACCAAGGGCCGAG
* **
27664 GGGCCGAGGGGGCCGAGGCGCCCGCAC-AGCCCAGCACCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGA-CCAAGGGCCGAG
* *
27705 GAGCC-AAGGGGCCGAGGCGCCCGCACGACCAA-GGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* *
27744 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* *
27785 GGGCCGAGGGGGCCCGAGCCGCGCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * * ** *
27827 GGGGCGAGGGGGCGCGAGGGGCGCGGAC-AGCCAAGCACC-AA
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGA-CCAAGGGCCGAG
*
27868 GGGCCGA-GGGGCGAGAGGCGCCCGCACG-CCAAGGGCCGAG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGACCAAGGGCCGAG
** * * **
27908 GGGCCGACAGGGCCGAGGCGCCCGC-CCAGCAGAGCACCGA-
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCA-AGGGCCGAG
27948 GGGCCGA-GGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
27988 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGA-G
*
28030 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCGGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * *
28071 GGGCCGAGGGGCCCGAGCCGCGCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
* * * ** *
28112 GGGCCGAGGGGACGCGAGGGGCGCGCAC-AGCCAAGCACC-AA
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGA-CCAAGGGCCGAG
28153 GGGCCGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGC-CGAGGCGCCCGCACGACCAAGGGCCGAG
* * **
28195 GGGCCGACAGGGGCCGAGGCGCCCGCAC-AGCAGAGCACCGA-
1 GGGCCGA-GGGGGCCGAGGCGCCCGCACGACCA-AGGGCCGAG
* *
28236 GGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAGG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGA-G
* **
28278 GGGCCGAGGGGGCCCGAGGCGCCCGCAC-AGCGAAGCACCGA-
1 GGGCCGAGGGGG-CCGAGGCGCCCGCACGA-CCAAGGGCCGAG
* * *
28319 GGGCCGAGGGCGCCCGAGGCGCCAG-AGCAGACCAAGGGCGGAG
1 GGGCCGAGGG-GGCCGAGGCGCCCGCA-C-GACCAAGGGCCGAG
* * * **
28362 GGGCCGAGGGGGCCGGGGCGCCGGCAC-AGCCGAGCACC-AG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGA-CCAAGGGCCGAG
*
28402 GGGCCGAGGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAG
1 GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
28443 G
1 G
28444 CGACCGGAAC
Statistics
Matches: 743, Mismatches: 113, Indels: 90
0.79 0.12 0.10
Matches are distributed among these distances:
37 6 0.01
38 4 0.01
39 42 0.06
40 187 0.25
41 269 0.36
42 196 0.26
43 39 0.05
ACGTcount: A:0.19, C:0.34, G:0.47, T:0.00
Consensus pattern (41 bp):
GGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAG
Found at i:28486 original size:23 final size:23
Alignment explanation
Indices: 28455--28516 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
28445 GACCGGAACG
*
28455 GGGCACCGGAGCACCGACGGGAC
1 GGGCGCCGGAGCACCGACGGGAC
*
28478 GGGCGCCGGAGCACCGCCGGGAC
1 GGGCGCCGGAGCACCGACGGGAC
28501 GGAGCGCCGGAGCACC
1 GG-GCGCCGGAGCACC
28517 ACCGGGAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.64
24 13 0.36
ACGTcount: A:0.18, C:0.37, G:0.45, T:0.00
Consensus pattern (23 bp):
GGGCGCCGGAGCACCGACGGGAC
Found at i:28521 original size:24 final size:23
Alignment explanation
Indices: 28446--28523 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 23
28436 GGCCGAGGCG
* *
28446 ACCGGAACGGGGCACCGGAGCACC
1 ACCGGGAC-GGGCGCCGGAGCACC
28470 GA-CGGGACGGGCGCCGGAGCACC
1 -ACCGGGACGGGCGCCGGAGCACC
*
28493 GCCGGGACGGAGCGCCGGAGCACC
1 ACCGGGACGG-GCGCCGGAGCACC
28517 ACCGGGA
1 ACCGGGA
28524 ACCGAACCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
23 22 0.47
24 24 0.51
25 1 0.02
ACGTcount: A:0.21, C:0.36, G:0.44, T:0.00
Consensus pattern (23 bp):
ACCGGGACGGGCGCCGGAGCACC
Found at i:28772 original size:35 final size:39
Alignment explanation
Indices: 28768--29007 Score: 209
Period size: 41 Copynumber: 5.9 Consensus size: 39
28758 GGGCCGAGGG
28768 GGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
1 GGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
*
28807 GGGGGCGCGAGGCGCCCGCACAG-CAGAGCACCGA-GGGCCGA
1 ---GGCGCGAGGCGCCCGCACAGCCA-AGCACCAAGGGGCCGA
* ** * *
28848 GGGGCGCCGAGGCGCCC-CACAACCAAGGGCCGAGGGGCCGG
1 --GGCG-CGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
* *
28889 GGGGCCGAGGCGCCCGCACAGCCAGGCACCAA-GGGCCGA
1 GGCG-CGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
* *
28928 GGGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGACCGA
1 ---GGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
* * *
28970 GGGGGCGGAGGCGCCCACACAGCCGAGCCACCAAGGGG
1 -GGCGC-GAGGCGCCCGCACAGCCAAG-CACCAAGGGG
29008 AGGGAGGCGC
Statistics
Matches: 166, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
39 20 0.12
40 32 0.19
41 70 0.42
42 44 0.27
ACGTcount: A:0.21, C:0.36, G:0.43, T:0.00
Consensus pattern (39 bp):
GGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
Found at i:28779 original size:42 final size:42
Alignment explanation
Indices: 28723--29007 Score: 356
Period size: 42 Copynumber: 6.9 Consensus size: 42
28713 AACGGGAGCG
*
28723 GGGGGCG-GAAGGCGCCCGCGCAGCCAGGCACCAAGGGGCCGA
1 GGGGGCGCG-AGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
*
28765 GGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
*
28807 GGGGGCGCGAGGCGCCCGCACAG-CAGAGCACCGA-GGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAG-GCACCAAGGGGCCGA
* * *
28848 -GGGGCGCCGAGGCGCCC-CACAACCAAGG-GCCGAGGGGCCG-
1 GGGGGCG-CGAGGCGCCCGCACAGCC-AGGCACCAAGGGGCCGA
28888 GGGGGC-CGAGGCGCCCGCACAGCCAGGCACCAA-GGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
* * *
28928 GGGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGACCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
* *
28970 GGGGGCG-GAGGCGCCCACACAGCCGAGCCACCAAGGGG
1 GGGGGCGCGAGGCGCCCGCACAGCC-AGGCACCAAGGGG
29008 AGGGAGGCGC
Statistics
Matches: 213, Mismatches: 17, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
39 19 0.09
40 29 0.14
41 73 0.34
42 91 0.43
43 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.45, T:0.00
Consensus pattern (42 bp):
GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
Found at i:30107 original size:22 final size:21
Alignment explanation
Indices: 30065--30107 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
30055 CCAGAGGCCC
30065 CGACGGCGGGGCGGCAAGCGGG
1 CGACGGCGGGGCGGC-AGCGGG
30087 CGACGGGCGCGGGCGGC-GCGG
1 CGAC-GGCG-GGGCGGCAGCGG
30108 CGAGCCCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.09, C:0.30, G:0.60, T:0.00
Consensus pattern (21 bp):
CGACGGCGGGGCGGCAGCGGG
Found at i:32771 original size:25 final size:27
Alignment explanation
Indices: 32743--32796 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
32733 CCGAGCGGCG
*
32743 GACC-GGCGC-GCGCCGGGCCACAGCC
1 GACCGGGCGCAGCGCCGGCCCACAGCC
*
32768 GACCGGGGCGCAGCGCCGGCCCCCAGCC
1 GACC-GGGCGCAGCGCCGGCCCACAGCC
32796 G
1 G
32797 CGGCCCGCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
27 5 0.21
28 15 0.62
ACGTcount: A:0.11, C:0.48, G:0.41, T:0.00
Consensus pattern (27 bp):
GACCGGGCGCAGCGCCGGCCCACAGCC
Found at i:36876 original size:41 final size:42
Alignment explanation
Indices: 36796--37888 Score: 495
Period size: 41 Copynumber: 26.2 Consensus size: 42
36786 CGCGGCGGGA
*
36796 GCCCGCACAGCCCAGGCACCAAGGGCCGAGGGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
36838 GCCCGCACAG-CCAAGCACCAAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAA-GGGCCGAGGGGGCCCGAGGC
* * * * * * *
36879 GCCCGCACCG-CCGAGC-CACGAGGCGCCCGCACAGCCGAGCCACCAAGGG
1 GCCCGCACAGCCCAAGCAC-CAAGG-G-CCG---AG--GGGGC-CCGAGGC
* * *
36928 GCCGAGGGGCCCGAGGCGCC-CGCACGACCAAGGGCCGAGGGGG-CCGAGGC
1 GCC----CGCAC-A-GC-CCAAG--C-ACCAAGGGCCGAGGGGGCCCGAGGC
* * ** * *
36978 CCCCGCAC-GACCAAGGGCCGAGGGACCGA-GGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCACCAAGGG-CCGAGGGGGCCCGAGGC
* * ** * * *
37019 GCGCGCAC-GACCAAGGGGCGAGGGGCCGAGGGGGCCCGAGGG
1 GCCCGCACAGCCCAA-GCACCAAGGGCCGAGGGGGCCCGAGGC
* * *
37061 GCCGGCACAG-CCAAGCACCAAGGGGCGAGGGGGCGCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
* ** *
37102 GCCCGCAC-GACCAAGGGCCGAGGGGCCGA-GGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
*
37142 GCCCGCACAGCCC-AGCACCGAGGAGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGG-GCCGAGGGGGCCCGAGGC
* ** *
37183 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* ** * * *
37225 GCCCGCAC-GACCAAGGGCGGAGGGGGCCGA-GGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCAC-CA-AGGGCCGAGGGGGCCCGAGGC
* * ** * * * *
37267 GCGCGCAC-GACCAAGGGCCGAGGGGGCGAGGGGGCGCGAGGG
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* *
37309 GCGCGGACAG-CCAAGCACCAAGGGCCGAGGGGG--CGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
* ** * *
37348 GCCCGCAC-GACCAAGGGCCGAGGGGCCGACAGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGA-GGGGGCCCGAGGC
* *
37390 GCCCGCCCAG--CAGAGCACCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCA-AGCACC-AAGGGCCGAGGGGGCCCGAGGC
* ** *
37431 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* ** *
37472 GCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* ** * * *
37513 GCCCGCAC-GACCAAGGGCGGAGGGGGCC--GGGGGCCCGAGCC
1 GCCCGCACAGCCCAAGCAC-CA-AGGGCCGAGGGGGCCCGAGGC
* * ** * * * *
37554 GCGCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGACGCGAGGG
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* *
37596 GCGCGCACAG-CCAAGCACCAAGGGCCGAGGGGGCGCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
* ** * *
37637 GCCCGCAC-GACCAAGGGCCGAGGGGCCGACAGGGG-CCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGA-GGGGGCCCGAGGC
*
37679 GCCCGCACAG--CAGAGCACCGAGGGGCCGA-GGGGCCCGAGGC
1 GCCCGCACAGCCCA-AGCACC-AAGGGCCGAGGGGGCCCGAGGC
* * ** *
37720 GACCGCAC-GACCAAGGGCCGAGGGGCCGA-GGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACC-AAGGGCCGAGGGGGCCCGAGGC
* * *
37761 GCCCGCACAG-CGAAGCACCGAGGGCCGAGGGCGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
* ** * * *
37802 G-CCG--CAGACCAAGGGCGGAGGGGCCGAGGGGG-CCGGGGC
1 GCCCGCACAGCCCAAGCAC-CAAGGGCCGAGGGGGCCCGAGGC
* * *
37841 GCCGGCACAG-CCGAGCACCAGGGGCCGA-GGGGCCCGAGGC
1 GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
37881 GCCCGCAC
1 GCCCGCAC
37889 GACCAAGGGC
Statistics
Matches: 847, Mismatches: 131, Indels: 148
0.75 0.12 0.13
Matches are distributed among these distances:
38 4 0.00
39 36 0.04
40 111 0.13
41 392 0.46
42 242 0.29
43 19 0.02
45 2 0.00
46 3 0.00
47 2 0.00
49 8 0.01
50 7 0.01
52 2 0.00
53 3 0.00
54 2 0.00
55 1 0.00
56 1 0.00
57 5 0.01
58 2 0.00
59 4 0.00
60 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.46, T:0.00
Consensus pattern (42 bp):
GCCCGCACAGCCCAAGCACCAAGGGCCGAGGGGGCCCGAGGC
Found at i:36902 original size:24 final size:24
Alignment explanation
Indices: 36873--36921 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
36863 CCGAGGGGGC
*
36873 CGAGGCGCCCGCACCGCCGAGCCA
1 CGAGGCGCCCGCACAGCCGAGCCA
36897 CGAGGCGCCCGCACAGCCGAGCCA
1 CGAGGCGCCCGCACAGCCGAGCCA
36921 C
1 C
36922 CAAGGGGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.49, G:0.33, T:0.00
Consensus pattern (24 bp):
CGAGGCGCCCGCACAGCCGAGCCA
Found at i:36963 original size:33 final size:33
Alignment explanation
Indices: 36920--37014 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
36910 CAGCCGAGCC
*
36920 ACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCACG
1 ACCAA-GGGCCGAGGGGACCGAGGCGCCCGCACG
* *
36954 ACCAAGGGCCGAGGGGGCCGAGGCCCCCGCACG
1 ACCAAGGGCCGAGGGGACCGAGGCGCCCGCACG
*
36987 ACCAAGGGCCGA-GGGACCGAGGGGCCCG
1 ACCAAGGGCCGAGGGGACCGAGGCGCCCG
37015 AGCCGCGCGC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.23
33 38 0.68
34 5 0.09
ACGTcount: A:0.19, C:0.37, G:0.44, T:0.00
Consensus pattern (33 bp):
ACCAAGGGCCGAGGGGACCGAGGCGCCCGCACG
Found at i:36967 original size:66 final size:64
Alignment explanation
Indices: 36829--36952 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 64
36819 GGCCGAGGGG
* *
36829 GCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGGCCGAGGCGCCCGCACCGCCGA
1 GCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCACCGCCAA
*
36893 GCCACGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCAC
1 GCC-CGAGGCGCCCGCACAGCCAAG-CACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCAC
36953 GACCAAGGGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
64 3 0.05
65 20 0.36
66 33 0.59
ACGTcount: A:0.19, C:0.43, G:0.39, T:0.00
Consensus pattern (64 bp):
GCCCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCACCGCCAA
Found at i:37129 original size:8 final size:8
Alignment explanation
Indices: 37116--37140 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
37106 GCACGACCAA
37116 GGGCCGAG
1 GGGCCGAG
37124 GGGCCGAG
1 GGGCCGAG
37132 GGGCCGAG
1 GGGCCGAG
37140 G
1 G
37141 CGCCCGCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.64, T:0.00
Consensus pattern (8 bp):
GGGCCGAG
Found at i:37309 original size:248 final size:246
Alignment explanation
Indices: 36897--37888 Score: 1145
Period size: 248 Copynumber: 4.1 Consensus size: 246
36887 CGCCGAGCCA
* *
36897 CGAGGCGCCCGCACAGCCGAGCCACCAAGGGGCCGAGGGGCCCGAGGCGCCCGCACGACC-A---
1 CGAGGCGCCCGCACAGCCGAG-CACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGG
* *
36958 ---A-GGGCCGAGGGGGCCGAGGCCCCCGCACGACCAAGGGCCGAGGGACCGAGGGGCCCGAGCC
65 CCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGCCCGAGCC
* * *
37019 GCGCGCACGACCAAGGGGCGAGGGGCCGAGGGGGCCCGAGGGGCCGGCACAGCCAAGCACCAAGG
130 GCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGCGCCGGCACAGCCAAGCACCAAGG
**
37084 GG-CGAGGGGGCGCGAGGCGCCCGCAC-GACCAAGGGCCGAGGGGCCGAGGGGC
195 GGCCGAGGGGGCGCGAGGCGCCCGCACAG-CCAAGCACC-AGGGGCCGAGGGGC
* *
37136 CGAGGCGCCCGCACAGCCCAGCACCGAGGAGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGC
1 CGAGGCGCCCGCACAGCCGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGC
*
37201 CGAGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGC
66 CGAGGGGCCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCCGA-GGGGCCGAGGGGCCCGAGC
* * * *
37266 CGCGCGCACGACCAAGGGCCGAGGGGGCGAGGGGGCGCGAGGGGCGCGG-ACAGCCAAGCACCAA
129 CGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGCGC-CGGCACAGCCAAGCACCAA
**
37330 -GGGCCGA-GGGG-GCGAGGCGCCCGCAC-GACCAAGGGCCGAGGGGCCGACAGGGGC
193 GGGGCCGAGGGGGCGCGAGGCGCCCGCACAG-CCAAGCACC-AGGGGCCG--AGGGGC
* *
37384 CGAGGCGCCCGCCCAGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGC
1 CGAGGCGCCCGCACAGCCGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGC
* *
37449 CGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCGAGGCG
66 CGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGCCCGAGCCG
* * ** *
37514 CCCGCACGACCAAGGGCGGAGGGGGCC--GGGGGCCCGAGCCG-CGCGCAC-GACCAAGGGCCGA
131 CCCGCACGACCAAGGGCCGA-GGGGCCGAGGGGGCCCGAGGCGCCG-GCACAG-CCAAGCACCAA
* * * *
37575 GGGGCCGAGGGGACGCGAGGGGCGCGCACAGCCAAGCACCAAGGGCCGAGGGGGC
193 GGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAGGGGCCGA-GGGGC
* ** * *
37630 GCGAGGCGCCCGCAC-GACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCAC-AGCAGA
1 -CGAGGCGCCCGCACAG-CCGAGCACCGAGGGGCCGA-GGGGGCCGAGGCGCCCGCACGACCA-A
** * *
37693 GCACCGAGGGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAGGGGCCGAGGGGCCCGA
62 GGGCCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGCCCGA
* * ** * * ** *
37758 GGCGCCCGCAC-AGCGAAGCACCGA-GGGCCGAGGGCGCCCGAGGCGCC-GCAGA-CCAAGGGCG
127 GCCGCCCGCACGA-CCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGCGCCGGCACAGCCAAGCACC
* * * *
37819 GAGGGGCCGAGGGGGC-CGGGGCGCCGGCACAGCCGAGCACCAGGGGCCGAGGGGCC
191 AAGGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAGGGGCCGAGGGG-C
37875 CGAGGCGCCCGCAC
1 CGAGGCGCCCGCAC
37889 GACCAAGGGC
Statistics
Matches: 661, Mismatches: 59, Indels: 61
0.85 0.08 0.08
Matches are distributed among these distances:
238 35 0.05
239 21 0.03
243 2 0.00
244 20 0.03
245 52 0.08
246 125 0.19
247 110 0.17
248 291 0.44
249 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.47, T:0.00
Consensus pattern (246 bp):
CGAGGCGCCCGCACAGCCGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGC
CGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGGGCCCGAGCCG
CCCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCCCGAGGCGCCGGCACAGCCAAGCACCAAGGG
GCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAGGGGCCGAGGGGC
Found at i:37452 original size:24 final size:24
Alignment explanation
Indices: 37421--37535 Score: 87
Period size: 24 Copynumber: 5.4 Consensus size: 24
37411 GGGGCCGAGG
37421 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
**
37445 GGGCCGAGG-G---GC-CGA--GG
1 GGGCCGAGGCGCCCGCACGACCAA
37462 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
**
37486 GGGCCGAGG-G---GC-CGA--GG
1 GGGCCGAGGCGCCCGCACGACCAA
37503 GGGCCGAGGCGCCCGCACGACCAA
1 GGGCCGAGGCGCCCGCACGACCAA
*
37527 GGGCGGAGG
1 GGGCCGAGG
37536 GGGCCGGGGG
Statistics
Matches: 68, Mismatches: 9, Indels: 28
0.65 0.09 0.27
Matches are distributed among these distances:
17 18 0.26
18 2 0.03
19 6 0.09
20 4 0.06
21 4 0.06
22 6 0.09
23 2 0.03
24 26 0.38
ACGTcount: A:0.17, C:0.34, G:0.49, T:0.00
Consensus pattern (24 bp):
GGGCCGAGGCGCCCGCACGACCAA
Found at i:37470 original size:289 final size:289
Alignment explanation
Indices: 36924--37832 Score: 1238
Period size: 289 Copynumber: 3.2 Consensus size: 289
36914 CGAGCCACCA
*
36924 AGGGGCCGA-GGGGCCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGGCCGA--GG--C---CC-
1 AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGCCG
* * ** ** * *
36980 C-CGCACGACCAAGGGCCGAGGGACCGA-GGGGCCCGAGCCGCGCGCAC-GACCAAGGGGCGAGG
66 CGCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCGCGAGGGGCGCGCACAG-CCAA-GCACCAAG
* * ** * *
37042 GGCCGAGGGGGCCCGAGGGGCCGGCAC-AGCCAAGCACCAAGGGG-CGA-GGGGGCGCGAGGCGC
129 GGCCGAGGGGG--CGAGGCGCCCGCACGA-CCAAGGGCCGAGGGGCCGACAGGGGC-CGAGGCGC
* * ** * ** *
37104 CCGCACGACCA-AGGGCCGAGGGGCCGA-GGGGCCGAGGCGCCCGCAC-AGCCCAGCACCGAGGA
190 CCGC-CCAGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGA-CCAAGGGCCGAGGG
37166 GCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCG
253 GCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCG
37203 AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGCCG
1 AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGCCG
* *
37268 CGCGCACGACCAAGGGCCGAGGGGGCGAGGGGGCGCGAGGGGCGCGGACAGCCAAGCACCAAGGG
66 CGCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCGCGAGGGGCGCGCACAGCCAAGCACCAAGGG
37333 CCGAGGGGGCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCCC
131 CCGAGGGGGCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCCC
37398 AGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGG
196 AGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGG
37463 GGCCGAGGCGCCCGCACGACCAAGGGCCG
261 GGCCGAGGCGCCCGCACGACCAAGGGCCG
37492 AGGGGCCGAGGGGG-CCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCG-GGGGCCCGAGCCG
1 AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGCCG
*
37555 CGCGCACGACCAAGGGCCGAGGGGCCGAGGGGACGCGAGGGGCGCGCACAGCCAAGCACCAAGGG
66 CGCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCGCGAGGGGCGCGCACAGCCAAGCACCAAGGG
37620 CCGAGGGGGCGCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGC
131 CCGA-GGGG-GCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGC
* * *
37685 ACAGCAGAGCACCGAGGGGCCGAGGGGCCCGAGGCGACCGCACGACCAAGGGCCGAGGGGCCGAG
194 CCAGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAG
* * **
37750 GGGCCCGAGGCGCCCGCAC-AGCGAAGCACCG
259 GGGGCCGAGGCGCCCGCACGA-CCAAGGGCCG
*
37781 A-GGGCCGAGGGCGCCCGAGGCG-CCGCA-GACCAAGGGCGGA-GGGGCCGAGGGG
1 AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGG
37833 GCCGGGGCGC
Statistics
Matches: 571, Mismatches: 36, Indels: 38
0.89 0.06 0.06
Matches are distributed among these distances:
279 9 0.02
280 41 0.07
282 2 0.00
284 1 0.00
286 7 0.01
287 126 0.22
288 88 0.15
289 275 0.48
290 21 0.04
291 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.47, T:0.00
Consensus pattern (289 bp):
AGGGGCCGAGGGGGCCCGAGGCGCCCGCACGACCAAGGGCGGAGGGGGCCGAGGGGCCCGAGCCG
CGCGCACGACCAAGGGCCGAGGGGCCGAGGGGGCGCGAGGGGCGCGCACAGCCAAGCACCAAGGG
CCGAGGGGGCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGACAGGGGCCGAGGCGCCCGCCC
AGCAGAGCACCGAGGGGCCGAGGGGGCCGAGGCGCCCGCACGACCAAGGGCCGAGGGGCCGAGGG
GGCCGAGGCGCCCGCACGACCAAGGGCCG
Found at i:37982 original size:24 final size:24
Alignment explanation
Indices: 37906--37984 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
37896 GGCCGAGGCG
* *
37906 ACCGGAACGGGGCACCGGAGCACC
1 ACCGGGACGGGGCGCCGGAGCACC
37930 GA-CGGGACGGGGCGCCGGAGCACC
1 -ACCGGGACGGGGCGCCGGAGCACC
* *
37954 GCCGGGACGGAGCGCCGGAGCACC
1 ACCGGGACGGGGCGCCGGAGCACC
37978 ACCGGGA
1 ACCGGGA
37985 ACCGAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.44, T:0.00
Consensus pattern (24 bp):
ACCGGGACGGGGCGCCGGAGCACC
Found at i:38240 original size:41 final size:41
Alignment explanation
Indices: 38186--38479 Score: 324
Period size: 41 Copynumber: 7.2 Consensus size: 41
38176 AACGGGAGCG
*
38186 GGGGGCG-GAAGGCGCCCGCGCAGCCAGGCACCAAGGGCCGA
1 GGGGGCGCG-AGGCGCCCGCACAGCCAGGCACCAAGGGCCGA
*
38227 GGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAA-GGGCCGA
*
38269 -GGGGCGCGAGGCGCCCGCACAG-CAGAGCACCGAGGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAG-GCACCAAGGGCCGA
* * *
38309 -GGGGCGCCGAGGCGCCC-CACAACCAAGG-GCCGAGGGCCG-
1 GGGGGCG-CGAGGCGCCCGCACAGCC-AGGCACCAAGGGCCGA
38348 GGGGGC-CGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAA-GGGCCGA
* *
38389 -GGGGCGCGAGGCGCCCGCACAGCCAAGCAGCAAGGGGACCGA
1 GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAA-GGG-CCGA
* *
38431 GGGGGCG-GAGGCGCCCACACAGCCGAGCCACCAAGGG--GA
1 GGGGGCGCGAGGCGCCCGCACAGCC-AGGCACCAAGGGCCGA
38470 GGGAGGCGCG
1 GGG-GGCGCG
38480 GGGGCAAAAG
Statistics
Matches: 221, Mismatches: 15, Indels: 34
0.82 0.06 0.13
Matches are distributed among these distances:
38 13 0.06
39 14 0.06
40 49 0.22
41 100 0.45
42 33 0.15
43 12 0.05
ACGTcount: A:0.20, C:0.35, G:0.45, T:0.00
Consensus pattern (41 bp):
GGGGGCGCGAGGCGCCCGCACAGCCAGGCACCAAGGGCCGA
Found at i:38372 original size:120 final size:124
Alignment explanation
Indices: 38219--38451 Score: 370
Period size: 120 Copynumber: 1.9 Consensus size: 124
38209 CCAGGCACCA
38219 AGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCGCGAGGCGCC
1 AGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCGCGAGGCGCC
*
38284 CGCACAG-CAGAGCACCGA-GGG-CCGAGGGGCGCCGAGGCGCCC-CACAACCAAGGGCCG
66 CGCACAGCCA-AGCACCAAGGGGACCGAGGGG-GCCGAGGCGCCCACACAACCAAGGGCCG
*
38341 AGGGCCG-GGGGGC-CGAGGCGCCCGCACAGCCAGGCACCAAGGGGCCGAGGGGCGCGAGGCGCC
1 AGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCGCGAGGCGCC
* *
38404 CGCACAGCCAAGCAGCAAGGGGACCGAGGGGGCGGAGGCGCCCACACA
66 CGCACAGCCAAGCACCAAGGGGACCGAGGGGGCCGAGGCGCCCACACA
38452 GCCGAGCCAC
Statistics
Matches: 103, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
120 62 0.60
121 22 0.21
122 19 0.18
ACGTcount: A:0.21, C:0.35, G:0.44, T:0.00
Consensus pattern (124 bp):
AGGGCCGAGGGGGCGCGAGGCGCCCGCACAGCCAAGCACCAAGGGGCCGAGGGGCGCGAGGCGCC
CGCACAGCCAAGCACCAAGGGGACCGAGGGGGCCGAGGCGCCCACACAACCAAGGGCCG
Found at i:39544 original size:21 final size:21
Alignment explanation
Indices: 39520--39564 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
39510 CCAGAGGCCC
39520 CGAC-GGCG-GGGCGGCAAGCGG
1 CGACGGGCGCGGGCGGC--GCGG
39541 CGACGGGCGCGGGCGGCGCGG
1 CGACGGGCGCGGGCGGCGCGG
39562 CGA
1 CGA
39565 GCCCGGAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 11 0.50
22 4 0.18
23 7 0.32
ACGTcount: A:0.11, C:0.31, G:0.58, T:0.00
Consensus pattern (21 bp):
CGACGGGCGCGGGCGGCGCGG
Done.