genome.fa.s249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3500
Parameters: 2 7 7 80 10 50 1000
Length:  74769

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1989--2487	47	10.4	47	92	2	737	32	9	29	29	1.88
2606--2684	37	2.1	37	90	0	122	24	18	31	25	1.98
8834--8904	29	2.5	29	86	2	99	59	7	5	28	1.47
8834--8912	29	2.8	29	81	9	83	59	6	6	27	1.46
10820--10881	23	2.7	24	85	5	74	35	1	4	58	1.29
10818--11159	26	13.5	26	70	13	128	32	6	3	57	1.39
12128--12162	18	1.9	18	88	0	52	45	8	8	37	1.65
12280--12345	33	2.0	33	100	0	132	45	6	21	27	1.75
12541--12583	17	2.4	18	92	7	79	48	0	4	46	1.22
12612--12643	17	1.9	17	93	6	57	18	3	3	75	1.08
13227--13296	29	2.3	29	80	4	77	27	10	12	50	1.72
15373--15450	37	2.1	37	85	0	102	34	14	6	44	1.70
16410--16501	33	2.7	33	75	9	87	29	20	13	36	1.90
18755--18823	27	2.6	27	88	6	104	42	15	0	42	1.47
21878--22045	77	2.2	79	93	4	276	38	7	5	48	1.55
26837--26897	30	2.0	31	100	0	108	21	32	6	39	1.79
36915--36993	35	2.3	34	76	10	79	34	21	20	24	1.97
37580--37613	16	2.0	18	88	11	54	17	38	20	23	1.93
39982--40060	37	2.1	37	88	4	115	25	30	18	25	1.98
40179--40701	47	11.1	47	94	0	884	28	29	8	32	1.88
40179--40701	237	2.2	237	94	0	906	28	29	8	32	1.88
43257--43479	40	5.7	40	85	7	287	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43257--43479	78	2.8	80	85	7	287	25	27	22	24	2.00
47591--47781	40	4.8	40	88	2	251	23	23	29	24	1.99
53223--54012	289	2.7	289	95	0	1364	30	17	21	30	1.96
55636--55810	19	9.1	17	69	23	50	30	3	2	63	1.25
55641--55779	42	3.3	43	79	14	114	30	4	2	62	1.29
55670--55795	41	2.9	41	81	13	114	31	3	1	62	1.23
55698--55869	17	9.5	18	69	20	101	34	2	1	61	1.18
55764--55804	6	6.8	6	83	10	57	36	0	0	63	0.95
55700--55804	30	3.4	30	75	20	94	34	2	0	62	1.10
55699--55860	12	14.9	11	68	22	67	34	3	1	61	1.20
55720--55869	12	12.3	12	70	21	84	34	2	1	61	1.18
55944--56009	23	2.9	22	80	8	71	31	4	0	63	1.14
55981--56007	14	1.9	14	100	0	54	37	3	0	59	1.15
55988--56039	17	3.1	17	77	22	65	32	3	1	61	1.25
55972--56039	34	2.0	33	88	2	100	33	2	1	61	1.20
55970--56025	14	4.1	13	75	24	53	35	1	1	60	1.17
56158--56201	22	2.0	23	82	13	56	40	9	2	47	1.48
64316--64375	27	2.2	27	78	0	66	36	21	20	21	1.95
64538--64650	27	4.2	27	87	0	100	26	20	17	35	1.95
64538--64650	54	2.1	54	83	0	136	26	20	17	35	1.95
64897--64932	17	2.1	18	94	5	65	22	41	22	13	1.89
64899--64940	17	2.4	17	88	8	57	21	45	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69901--69979	37	2.1	37	88	4	115	25	30	18	25	1.98
70098--70476	47	8.1	47	92	0	580	28	29	9	32	1.89
73840--73891	25	2.0	26	85	3	70	28	30	7	32	1.85
74069--74170	39	2.6	39	87	3	134	23	26	23	26	2.00
74061--74211	78	1.9	79	83	4	198	24	25	22	27	2.00
74581--74682	42	2.5	42	87	12	158	29	31	12	26	1.93

Tables:   1

The End!