genome.fa.s2493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3487
Parameters: 2 7 7 80 10 50 1000
Length:  35322

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650--1709	27	2.3	26	85	2	75	35	20	23	21	1.96
10195--10255	26	2.3	27	82	2	70	44	24	6	24	1.77
10216--10335	27	4.4	27	80	6	127	39	20	8	32	1.82
10357--10470	54	2.1	54	90	3	176	30	21	7	40	1.80
10355--10456	27	3.8	27	92	0	177	29	23	7	39	1.83
10422--10587	27	6.1	27	79	4	113	37	22	8	30	1.84
10463--10587	54	2.3	54	83	2	144	42	21	8	28	1.81
10590--10876	27	10.6	27	90	0	423	31	19	24	24	1.98
10519--10877	81	4.4	82	85	3	336	33	20	21	25	1.97
11223--11281	22	2.7	22	81	5	66	20	27	22	30	1.98
11649--11689	19	2.1	20	90	4	66	14	17	12	56	1.68
11657--11702	19	2.4	19	81	0	56	19	17	13	50	1.78
11669--11744	31	2.5	31	88	0	107	21	19	11	47	1.81
11694--11744	6	8.3	6	75	12	50	19	21	13	45	1.85
14455--14509	26	2.1	27	82	3	67	25	10	0	63	1.27
17386--17432	24	2.0	24	91	0	76	23	19	23	34	1.97
17387--17482	25	3.9	25	75	6	90	23	25	21	29	1.99
17380--17491	50	2.3	49	79	4	118	24	25	20	30	1.99
22664--22767	28	3.7	28	89	2	136	25	14	32	27	1.94
22686--22784	29	3.5	28	86	4	117	29	13	32	25	1.93
24585--24660	38	2.0	38	100	0	152	31	13	23	31	1.93
25849--25993	40	3.6	40	85	4	193	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32539--32591	26	2.0	27	89	10	83	24	18	15	41	1.89
33787--33931	40	3.6	40	85	4	193	25	24	26	23	2.00

Tables:   1

The End!