Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1130

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13773
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:13459 original size:12 final size:12

Alignment explanation


    Indices: 13442--13468  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

      13432 TTTCTTTTGC

                        
      13442 TTTTCAAAGGCT
          1 TTTTCAAAGGCT

                        
      13454 TTTTCAAAGGCT
          1 TTTTCAAAGGCT

               
      13466 TTT
          1 TTT

      13469 GCAAGTTCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48


Consensus pattern (12 bp):   
TTTTCAAAGGCT
Done.