Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 106 of 196
Found at i:31860165 original size:3 final size:3
Alignment explanation
Indices: 31860157--31860202 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
31860147 AAACGTAAAC
31860157 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
31860203 CAACAACAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:31867800 original size:16 final size:16
Alignment explanation
Indices: 31867775--31867812 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
31867765 AATAGAATGC
31867775 AAAAATT-AAATTAAA
1 AAAAATTAAAATTAAA
31867790 AAAATATTAAAATTAAA
1 AAAA-ATTAAAATTAAA
31867807 ATAAAA
1 A-AAAA
31867813 AATTGCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.20
16 3 0.15
17 10 0.50
18 3 0.15
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATTAAAATTAAA
Found at i:31869758 original size:18 final size:19
Alignment explanation
Indices: 31869735--31869775 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
31869725 TTTTATGTGT
*
31869735 TATAAATTATATAATAT-A
1 TATAAATAATATAATATAA
31869753 TATAAATAATATAATATAA
1 TATAAATAATATAATATAA
31869772 TATA
1 TATA
31869776 TTAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TATAAATAATATAATATAA
Found at i:31869766 original size:5 final size:5
Alignment explanation
Indices: 31869743--31869775 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
31869733 GTTATAAATT
31869743 ATATA ATAT- ATATA A-ATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
31869776 TTAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:31869780 original size:8 final size:10
Alignment explanation
Indices: 31869743--31869775 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
31869733 GTTATAAATT
31869743 ATATAATAT-
1 ATATAATATA
31869752 ATATAA-ATA
1 ATATAATATA
31869761 ATATAATATA
1 ATATAATATA
31869771 ATATA
1 ATATA
31869776 TTAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 12 0.55
10 8 0.36
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
ATATAATATA
Found at i:31870154 original size:2 final size:2
Alignment explanation
Indices: 31870112--31870137 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
31870102 CTGTTATAGA
31870112 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
31870138 GATTTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31870438 original size:15 final size:16
Alignment explanation
Indices: 31870408--31870440 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
31870398 ATAAATCTTA
31870408 TAAAATATGGAATAAAT
1 TAAAATAT-GAATAAAT
31870425 TAAAATAT-AATAAAT
1 TAAAATATGAATAAAT
31870440 T
1 T
31870441 GAGAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAATATGAATAAAT
Found at i:31870757 original size:25 final size:24
Alignment explanation
Indices: 31870695--31870762 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
31870685 TAAGTATATA
** *
31870695 ATAATTTAAAAATAATTAAA-ATT
1 ATAATTTTTAAATAATTAAATACT
*
31870718 A-AATTTTTTAA-AATTAAATTACT
1 ATAATTTTTAAATAATTAAA-TACT
31870741 ATAATTTTTAAATAATTTAAAT
1 ATAATTTTTAAATAA-TTAAAT
31870763 CAAATTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
21 7 0.20
22 7 0.20
23 4 0.11
24 9 0.26
25 3 0.09
26 5 0.14
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAATTTTTAAATAATTAAATACT
Found at i:31871829 original size:75 final size:75
Alignment explanation
Indices: 31871749--31871901 Score: 227
Period size: 75 Copynumber: 2.1 Consensus size: 75
31871739 ATATGTTTCT
* * * **
31871749 GTTTTTTTTTAATATTT-ATTTTTTAGTAGATGCAAGTAAGGTATGATCCCATTGAGTTTATTTA
1 GTTTTTTTTTAACATTTGATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTTA
31871813 TTTTTTGATA
66 TTTTTTGATA
* * *
31871823 GTTTTTTTTTAACATTTGTTTTTTTAGTAAATGCAAATAACATATGATCCTATTGAGTTTATTTG
1 GTTTTTTTTTAACATTTGATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTTA
31871888 TTTTTTGATA
66 TTTTTTGATA
31871898 GTTT
1 GTTT
31871902 ATGTTTCTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
74 16 0.23
75 54 0.77
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.55
Consensus pattern (75 bp):
GTTTTTTTTTAACATTTGATTTTTTAGTAAATGCAAATAACATATGATCCCATTGAGTTTATTTA
TTTTTTGATA
Found at i:31882719 original size:24 final size:24
Alignment explanation
Indices: 31882644--31882893 Score: 182
Period size: 24 Copynumber: 10.7 Consensus size: 24
31882634 CATTTATACA
*
31882644 TCAAATTGGACAGCATTTTAATATGC
1 TCAAATTGGACAGCA--TCAATATGC
* * *
31882670 TCAAAATGGACA--A-CATTATAC
1 TCAAATTGGACAGCATCAATATGC
*
31882691 ATCAAATTGGATAGCATCAATATGC
1 -TCAAATTGGACAGCATCAATATGC
* * *
31882716 TCAAAATGGACAG-A--ATTATAC
1 TCAAATTGGACAGCATCAATATGC
* *
31882737 ATCAAATTGGACAGCTTTAATATGC
1 -TCAAATTGGACAGCATCAATATGC
* *
31882762 TCAAATTGGA-A--ATCATTATAC
1 TCAAATTGGACAGCATCAATATGC
*
31882783 ATCAAATTGGACAACATCAATATGC
1 -TCAAATTGGACAGCATCAATATGC
* * * *
31882808 TTAAAATGGACA--A-CATTATCC
1 TCAAATTGGACAGCATCAATATGC
*
31882829 ATCAAATTGGACAGCATCAATATAC
1 -TCAAATTGGACAGCATCAATATGC
31882854 TCAAATTGGACAGCATCAATATGC
1 TCAAATTGGACAGCATCAATATGC
* *
31882878 TCAAAATGGATAGCAT
1 TCAAATTGGACAGCAT
31882894 TATAACATAT
Statistics
Matches: 175, Mismatches: 33, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
21 22 0.13
22 43 0.25
23 3 0.02
24 71 0.41
25 25 0.14
26 11 0.06
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (24 bp):
TCAAATTGGACAGCATCAATATGC
Found at i:31882734 original size:46 final size:46
Alignment explanation
Indices: 31882627--31882866 Score: 295
Period size: 46 Copynumber: 5.2 Consensus size: 46
31882617 TACCCTATTT
* *
31882627 TGGACAGCATTTATACATCAAATTGGACAGCATTTTAATATGCTCAAAA
1 TGGACAG-AATTATACATCAAATTGGACAGCA--TCAATATGCTCAAAA
*
31882676 TGGACA-ACATTATACATCAAATTGGATAGCATCAATATGCTCAAAA
1 TGGACAGA-ATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
31882722 TGGACAGAATTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACAGAATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* ** * *
31882768 TGGAAATCATTATACATCAAATTGGACAACATCAATATGCTTAAAA
1 TGGACAGAATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
31882814 TGGACA-ACATTATCCATCAAATTGGACAGCATCAATATACTCAAAT
1 TGGACAGA-ATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
31882860 TGGACAG
1 TGGACAG
31882867 CATCAATATG
Statistics
Matches: 165, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
46 136 0.82
47 2 0.01
48 21 0.13
49 6 0.04
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (46 bp):
TGGACAGAATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:31882801 original size:92 final size:92
Alignment explanation
Indices: 31882627--31882865 Score: 338
Period size: 92 Copynumber: 2.6 Consensus size: 92
31882617 TACCCTATTT
* *
31882627 TGGACAGCATTTATACATCAAATTGGACAGCATTTTAATATGCTCAAAATGGACAACATTATACA
1 TGGACAG-AATTATACATCAAATTGGACAGC--TTTAATATGCTCAAATTGGACAACATTATACA
* *
31882692 TCAAATTGGATAGCATCAATATGCTCAAAA
63 TCAAATTGGACAACATCAATATGCTCAAAA
31882722 TGGACAGAATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGA-AATCATTATACATC
1 TGGACAGAATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAA-CATTATACATC
*
31882786 AAATTGGACAACATCAATATGCTTAAAA
65 AAATTGGACAACATCAATATGCTCAAAA
* * * *
31882814 TGGACA-ACATTATCCATCAAATTGGACAGCATCAATATACTCAAATTGGACA
1 TGGACAGA-ATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACA
31882866 GCATCAATAT
Statistics
Matches: 132, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
91 3 0.02
92 99 0.75
93 1 0.01
94 22 0.17
95 7 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (92 bp):
TGGACAGAATTATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACAACATTATACATCA
AATTGGACAACATCAATATGCTCAAAA
Found at i:31882818 original size:70 final size:69
Alignment explanation
Indices: 31882638--31882887 Score: 217
Period size: 70 Copynumber: 3.6 Consensus size: 69
31882628 GGACAGCATT
* * * * *
31882638 TATACATCAAATTGGACAGCATTTTAATATGCTCAAAATGGACAACATTATACATCAAATTGGAT
1 TATAC-TCAAATTGGACAACA--TCAATATGCTCAAAATGGACAACAATATCCATCAAATTGGAC
31882703 AGCATCAA
63 A-CATCAA
* * * * * *
31882711 TATGCTCAAAATGGACAGA-AT---TATACATCAAATTGGACAGCTTTAATATGC-TCAAATTGG
1 TATACTCAAATTGGACA-ACATCAATATGC-TCAAAATGGACAAC---AATATCCATCAAATTGG
*
31882771 A-A-ATCAT
61 ACACATCAA
* *
31882778 TATACATCAAATTGGACAACATCAATATGCTTAAAATGGACAACATTATCCATCAAATTGGACAG
1 TATAC-TCAAATTGGACAACATCAATATGCTCAAAATGGACAACAATATCCATCAAATTGGACA-
31882843 CATCAA
64 CATCAA
*
31882849 TATACTCAAATTGGACAGCATCAATATGCTCAAAATGGA
1 TATACTCAAATTGGACAACATCAATATGCTCAAAATGGA
31882888 TAGCATTATA
Statistics
Matches: 143, Mismatches: 20, Indels: 31
0.74 0.10 0.16
Matches are distributed among these distances:
67 18 0.13
68 35 0.24
69 2 0.01
70 54 0.38
71 18 0.13
72 12 0.08
73 4 0.03
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (69 bp):
TATACTCAAATTGGACAACATCAATATGCTCAAAATGGACAACAATATCCATCAAATTGGACACA
TCAA
Found at i:31883631 original size:41 final size:40
Alignment explanation
Indices: 31883585--31883720 Score: 184
Period size: 41 Copynumber: 3.4 Consensus size: 40
31883575 ATTCCATCGT
* *
31883585 ATAGCCGAAGCTATTATAATCTCGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATT-TAATCTCGCACACTAAGTGCCATAA
* * *
31883626 ATAGCCGAAGCTATCTCAGTCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTAT-TTAATCTCGCACACTAAGTGCCATAA
*
31883667 ATAGCCGAAGCTATTTCAA-ATCGCACACTAAGTGCCATAA
1 ATAGCCGAAGCTATTT-AATCTCGCACACTAAGTGCCATAA
31883707 ATAGCCGAAGCTAT
1 ATAGCCGAAGCTAT
31883721 CTCAAATTTC
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
40 34 0.40
41 50 0.59
42 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
ATAGCCGAAGCTATTTAATCTCGCACACTAAGTGCCATAA
Found at i:31883702 original size:40 final size:40
Alignment explanation
Indices: 31883584--31883741 Score: 185
Period size: 40 Copynumber: 3.9 Consensus size: 40
31883574 TATTCCATCG
*
31883584 TATAGCCGAAGCTAT-T-ATAATCTCGCACACTAAGTGCCTTA
1 TATAGCCGAAGCTATCTCA-AA--TCGCACACTAAGTGCCATA
* **
31883625 CATAGCCGAAGCTATCTCAGTCTCGCACACTAAGTGCCATA
1 TATAGCCGAAGCTATCTCA-AATCGCACACTAAGTGCCATA
*
31883666 TATAGCCGAAGCTATTTCAAATCGCACACTAAGTGCCATA
1 TATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATA
* ** *
31883706 AATAGCCGAAGCTATCTCAAATTTCATACTAAGTGC
1 TATAGCCGAAGCTATCTCAAATCGCACACTAAGTGC
31883742 TAAACATAGC
Statistics
Matches: 101, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
40 50 0.50
41 49 0.49
42 1 0.01
43 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (40 bp):
TATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATA
Found at i:31890144 original size:46 final size:46
Alignment explanation
Indices: 31890076--31890356 Score: 402
Period size: 46 Copynumber: 6.1 Consensus size: 46
31890066 TACCTTGTTT
* *
31890076 TGGACATCATTTATACATCAAATTGGACAGCATTAATATGCTCAAAA
1 TGGACAACA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
31890123 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * * * * * *
31890169 TGGAGAGCATTATACATCAAATTAGATAGCTTTAATATGCTCAAAT
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
31890215 TGGACTGA-ATTATACATCAAATTAGACAACATCAATATGCTCAAAA
1 TGGAC-AACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
31890261 TGGACAGCATTATACATCGAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
*
31890307 TGGACAACATTATACATCAAATTGGGCAGCATCAATATGCTCAAAA
1 TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
31890353 TGGA
1 TGGA
31890357 GAATTATAAC
Statistics
Matches: 207, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
46 199 0.96
47 8 0.04
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (46 bp):
TGGACAACATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:31891121 original size:41 final size:41
Alignment explanation
Indices: 31891070--31891190 Score: 147
Period size: 41 Copynumber: 3.0 Consensus size: 41
31891060 AGTTATTATA
* * *
31891070 ATCTCGCACACTAAGTGCCTTACATAGCCGAAGCTATCT-T
1 ATCTCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCC
* * *
31891110 AGTCTCACACACTAAATGCCATATATAGCCGAAGCTAT-TCC
1 A-TCTCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCC
**
31891151 AAATCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTC
1 ATCTCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTC
31891191 GAATTTCATA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 33 0.49
41 35 0.51
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCC
Found at i:31891171 original size:40 final size:42
Alignment explanation
Indices: 31891073--31891208 Score: 138
Period size: 40 Copynumber: 3.4 Consensus size: 42
31891063 TATTATAATC
* * * **
31891073 TCGCACACTAAGTGCCTTACATAGCCGAAGCTA-TCTTAGTC
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
* * *
31891114 TCACACACTAAATGCCATATATAGCCGAAGCTATTC-CA-AA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
31891154 TCGCACACTAAGTGCCATAAATAGCCGAAGCTA-TCTC-GAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
** *
31891194 TTTCATACTAAGTGC
1 TCGCACACTAAGTGC
31891209 TAAACATAGC
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
39 2 0.03
40 45 0.57
41 30 0.38
42 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGCTATTCTCAGAA
Found at i:31896428 original size:43 final size:45
Alignment explanation
Indices: 31896381--31896465 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
31896371 TTCTAACTAA
* *
31896381 AAATTATAATTA-TTTTAAATGTGTAATTATCAAAA-TTTTTATT
1 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTTATT
31896424 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTT
1 AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTT
31896466 TATATCAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 12 0.32
44 21 0.55
45 5 0.13
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (45 bp):
AAATTATAATTATTTTTAAATGTATAATTATAAAAACTTTTTATT
Found at i:31896464 original size:24 final size:23
Alignment explanation
Indices: 31896382--31896464 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
31896372 TCTAACTAAA
** *
31896382 AATTATAATTATTTTAAATGTGT
1 AATTATAAAAATTTTAAATGTAT
* *
31896405 AATTATCAAAATTTT-TAT-TA-
1 AATTATAAAAATTTTAAATGTAT
* *
31896425 AATTATAATTATTTTTAAATGTAT
1 AATTATAA-AAATTTTAAATGTAT
31896449 AATTATAAAAACTTTT
1 AATTATAAAAA-TTTT
31896465 TTATATCAAC
Statistics
Matches: 44, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
20 7 0.16
21 6 0.14
22 4 0.09
23 15 0.34
24 12 0.27
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
AATTATAAAAATTTTAAATGTAT
Found at i:31898856 original size:21 final size:22
Alignment explanation
Indices: 31898816--31898856 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
31898806 ATATTTTCTA
* *
31898816 AATTATTAAAATTTTTAATTAG
1 AATTATTAAAATATTAAATTAG
31898838 AATT-TTAAAATATTAAATT
1 AATTATTAAAATATTAAATT
31898857 TTATGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTATTAAAATATTAAATTAG
Found at i:31902353 original size:40 final size:40
Alignment explanation
Indices: 31902316--31902540 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
31902306 GCTACTCGTT
* *
31902316 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
31902356 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
31902396 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
31902436 CAAATGCCTTCGGGACTT-ACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
31902475 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
31902516 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
31902541 CATCATTCAA
Statistics
Matches: 171, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
38 3 0.02
39 35 0.20
40 120 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:31941325 original size:39 final size:39
Alignment explanation
Indices: 31941268--31941488 Score: 259
Period size: 39 Copynumber: 5.6 Consensus size: 39
31941258 AAGTGAATAT
* * * * *
31941268 ATCCGGATTAAGAT-CCGAAGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGCATTCGTGCGAGTTATTAA
31941307 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAA-GCATTCGTGCGAGTTATTAA
31941347 ATCCGGGTTAAGTCCCGAAGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGCATTCGTGCGAGTTATTAA
* *
31941386 ATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAA-GCATTCGTGCGAGTTATTAA
* * *
31941426 ATCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAA-GCATTCGTGCGAGTTATTAA
* * *
31941464 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAA-GCATT
31941489 TGAATGAGGA
Statistics
Matches: 164, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 23 0.14
39 76 0.46
40 65 0.40
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGCATTCGTGCGAGTTATTAA
Found at i:31941348 original size:40 final size:40
Alignment explanation
Indices: 31941229--31941488 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
31941219 TTGAATGCTG
* * * * * *
31941229 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
31941269 TCCGGATTAAGAT-CCGAA-GCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
31941308 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
31941348 TCCGGGTTAAGTCCCGAA-GCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
31941387 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
31941427 TCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
31941465 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
31941489 TGAATGAGGA
Statistics
Matches: 193, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
38 23 0.12
39 83 0.43
40 86 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:31941365 original size:79 final size:78
Alignment explanation
Indices: 31941229--31941488 Score: 306
Period size: 79 Copynumber: 3.3 Consensus size: 78
31941219 TTGAATGCTG
* * * * * *
31941229 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCGAAGCCTTT
*
31941293 GTGCGAGATACTAAA
64 GTGCGAGTTACTAAA
* * *
31941308 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGCCTTTG
*
31941373 TGCGAGTTATTAAA
65 TGCGAGTTACTAAA
* * * * * *
31941387 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTATGTCCGAAGGCATTGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGCCTTTGT
*
31941452 GTGAGTTACTAAA
66 GCGAGTTACTAAA
* *
31941465 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
31941489 TGAATGAGGA
Statistics
Matches: 155, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
78 41 0.26
79 108 0.70
80 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGCCTTTGT
GCGAGTTACTAAA
Found at i:31943043 original size:18 final size:20
Alignment explanation
Indices: 31943020--31943059 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
31943010 AAGGTGGCAA
31943020 TTTTTC-TAT-CACTTCAAT
1 TTTTTCTTATGCACTTCAAT
31943038 TTTTTCTTTATGCACTTCAAT
1 TTTTTC-TTATGCACTTCAAT
31943059 T
1 T
31943060 CCTCTCTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTTCTTATGCACTTCAAT
Found at i:31961085 original size:32 final size:32
Alignment explanation
Indices: 31961049--31961111 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
31961039 GAAAAGGCAT
31961049 AATATCATTTCTCAACTTGGCATTCATAGTAA
1 AATATCATTTCTCAACTTGGCATTCATAGTAA
31961081 AATATCATTTCTCAACTTGGCATTCATAGTA
1 AATATCATTTCTCAACTTGGCATTCATAGTA
31961112 TGTGGGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (32 bp):
AATATCATTTCTCAACTTGGCATTCATAGTAA
Found at i:31964189 original size:25 final size:25
Alignment explanation
Indices: 31964151--31964198 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
31964141 TAACCTAATC
*
31964151 AAAGTTTAAGTGGGA-AAGTAAAAAT
1 AAAGTTTAACTGGGAGAAG-AAAAAT
31964176 AAAGTTTAACTGGGAGAAGAAAA
1 AAAGTTTAACTGGGAGAAGAAAA
31964199 GAAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.25, T:0.21
Consensus pattern (25 bp):
AAAGTTTAACTGGGAGAAGAAAAAT
Found at i:31970251 original size:27 final size:27
Alignment explanation
Indices: 31970181--31970240 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
31970171 GGAATCTATT
*
31970181 AGAATATGTCACAAAGGCTTTCCATTC
1 AGAATATGCCACAAAGGCTTTCCATTC
*
31970208 AGAATATGCCACAAAGGTTTTCCATTC
1 AGAATATGCCACAAAGGCTTTCCATTC
31970235 AGAATA
1 AGAATA
31970241 CTCCATAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (27 bp):
AGAATATGCCACAAAGGCTTTCCATTC
Found at i:31970340 original size:27 final size:27
Alignment explanation
Indices: 31970296--31970367 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
31970286 ACAAAGTTTG
* *
31970296 CCACAAAGGCATTC-CTTTAATATTTCA
1 CCACGAAGGC-TTCTCTTTAATATCTCA
* * *
31970323 CCACGAAGG-TTACTCTTTCATGTCTCG
1 CCACGAAGGCTT-CTCTTTAATATCTCA
31970350 CCACGAAGGCTTCTCTTT
1 CCACGAAGGCTTCTCTTT
31970368 CATGACATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
25 2 0.05
26 1 0.03
27 32 0.86
28 2 0.05
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (27 bp):
CCACGAAGGCTTCTCTTTAATATCTCA
Found at i:31981300 original size:13 final size:13
Alignment explanation
Indices: 31981282--31981314 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
31981272 GAATCAATTT
31981282 GAATTTCTTTTTC
1 GAATTTCTTTTTC
31981295 GAATTTCTTTTTC
1 GAATTTCTTTTTC
31981308 GAATTTC
1 GAATTTC
31981315 GAGTCCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.58
Consensus pattern (13 bp):
GAATTTCTTTTTC
Found at i:31981357 original size:9 final size:9
Alignment explanation
Indices: 31981340--31981376 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
31981330 TGAATTTTCA
31981340 AATTCGAAT
1 AATTCGAAT
*
31981349 AACTCGAAT
1 AATTCGAAT
*
31981358 AATTCAAAT
1 AATTCGAAT
31981367 AATTCGAAT
1 AATTCGAAT
31981376 A
1 A
31981377 TAAACTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:31986561 original size:29 final size:30
Alignment explanation
Indices: 31986529--31986593 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
31986519 TTTAAAAAAT
*
31986529 ATTTTTATACTTGTTAAATA-T-TTTTTATA
1 ATTTTTATA-TTGTTAAAAATTATTTTTATA
*
31986558 ATTTTT-TATTTTTAAAAATTATTTTTATA
1 ATTTTTATATTGTTAAAAATTATTTTTATA
31986587 ATTTTTA
1 ATTTTTA
31986594 AAATTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 8 0.26
28 3 0.10
29 20 0.65
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (30 bp):
ATTTTTATATTGTTAAAAATTATTTTTATA
Found at i:31986729 original size:29 final size:30
Alignment explanation
Indices: 31986690--31986753 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
31986680 TGATTTGACA
** *
31986690 AAAAATATAAATTTAAAAATTAAAAAAATG
1 AAAAATATAAATGAAAAAACTAAAAAAATG
**
31986720 AAAAAT-TAAATGAAAAAACTAAAATGATG
1 AAAAATATAAATGAAAAAACTAAAAAAATG
31986749 AAAAA
1 AAAAA
31986754 GTTGGAAGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (30 bp):
AAAAATATAAATGAAAAAACTAAAAAAATG
Found at i:31987302 original size:19 final size:20
Alignment explanation
Indices: 31987270--31987307 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
31987260 AAAAAACTTA
*
31987270 TAAAATTTATAAAATTATTT
1 TAAAATTTACAAAATTATTT
31987290 TAAAA-TTACAAAATTATT
1 TAAAATTTACAAAATTATT
31987308 AAAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAATTTACAAAATTATTT
Found at i:31987322 original size:28 final size:28
Alignment explanation
Indices: 31987251--31987323 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
31987241 AAAATGAAAA
** *
31987251 AAAATTATAAAAAAACTTATAAAATTTAT
1 AAAATTATTTAAAAA-TTACAAAATTTAT
*
31987280 AAAATTATTTTAAAATTACAAAA-TTATT
1 AAAATTATTTAAAAATTACAAAATTTA-T
31987308 AAAATTATTTAAAAAT
1 AAAATTATTTAAAAAT
31987324 ATAAAATAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 3 0.08
28 23 0.61
29 12 0.32
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (28 bp):
AAAATTATTTAAAAATTACAAAATTTAT
Found at i:31987586 original size:25 final size:25
Alignment explanation
Indices: 31987519--31987586 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
31987509 AAAAAAATAT
31987519 TAAAATTTCTA-ATTTTTTATTTTAA
1 TAAAATTT-TATATTTTTTATTTTAA
**
31987544 TAAAATTGTTATA-TTTTTATTTTTT
1 TAAAATT-TTATATTTTTTATTTTAA
*
31987569 TGAAATTTTATATTTTTT
1 TAAAATTTTATATTTTTT
31987587 TTCTATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 5 0.14
25 30 0.81
26 2 0.05
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (25 bp):
TAAAATTTTATATTTTTTATTTTAA
Found at i:31987594 original size:18 final size:17
Alignment explanation
Indices: 31987554--31987597 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
31987544 TAAAATTGTT
31987554 ATATTTTTATTTTTTTG
1 ATATTTTTATTTTTTTG
* *
31987571 AAATTTTATATTTTTTTT
1 ATATTTT-TATTTTTTTG
*
31987589 CTATTTTTA
1 ATATTTTTA
31987598 ATAATTTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (17 bp):
ATATTTTTATTTTTTTG
Found at i:31988166 original size:15 final size:16
Alignment explanation
Indices: 31988141--31988171 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
31988131 CTGCAGTTTC
31988141 AAAATATTAAAAATAT
1 AAAATATTAAAAATAT
31988157 AAAA-ATTAAAAATAT
1 AAAATATTAAAAATAT
31988172 CAATTGTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATATTAAAAATAT
Found at i:31989628 original size:30 final size:30
Alignment explanation
Indices: 31989588--31989652 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
31989578 TGGCAAAGAA
31989588 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
* *
31989618 CTCTTAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
31989648 CTCTC
1 CTCTC
31989653 TTTAATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.29, G:0.03, T:0.40
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAG
Found at i:31992577 original size:12 final size:12
Alignment explanation
Indices: 31992560--31992612 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
31992550 TCGAATAAGC
31992560 ATGTATATATAT
1 ATGTATATATAT
31992572 ATGTATATATAT
1 ATGTATATATAT
*
31992584 AATGCTAGAATATAT
1 -ATG-TA-TATATAT
**
31992599 ATACATATATAT
1 ATGTATATATAT
31992611 AT
1 AT
31992613 AAAAGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 4 0.12
15 6 0.18
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:31993327 original size:41 final size:41
Alignment explanation
Indices: 31993278--31993386 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
31993268 GACTTTAAGT
*
31993278 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
**
31993319 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGT
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
31993360 CTAGCAGGCTATGTGCCGTTGAATCTG
1 CTAGCAGGCTACGTGCCGGTG-ATCTG
31993387 TTTTAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
41 57 0.92
42 5 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:32000199 original size:12 final size:12
Alignment explanation
Indices: 32000182--32000234 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
32000172 TCGAATAAGC
32000182 ATGTATATATAT
1 ATGTATATATAT
32000194 ATGTATATATAT
1 ATGTATATATAT
*
32000206 AATGCTAGAATATAT
1 -ATG-TA-TATATAT
**
32000221 ATACATATATAT
1 ATGTATATATAT
32000233 AT
1 AT
32000235 TAAAGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 4 0.12
15 6 0.18
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:32001020 original size:41 final size:41
Alignment explanation
Indices: 32000900--32001033 Score: 205
Period size: 41 Copynumber: 3.3 Consensus size: 41
32000890 GACTTTAAGT
*
32000900 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTACAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
32000941 CTAACAGGTTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* * **
32000982 CTAGCAGGCTACGTGCCTGTGATCTGAATCAGGCTATAAGT
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
32001023 CTAGCAGGCTA
1 CTAGCAGGCTA
32001034 TGTGACGTTG
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 84 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:32001918 original size:18 final size:18
Alignment explanation
Indices: 32001895--32001929 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32001885 GCCAGGTGCA
*
32001895 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
32001913 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
32001930 ATTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:32001936 original size:18 final size:18
Alignment explanation
Indices: 32001894--32001936 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32001884 TGCCAGGTGC
*
32001894 ATATCCTAGCCCTTATAT
1 ATATCCTAACCCTTATAT
*
32001912 GTATCCTAACCCTTATAT
1 ATATCCTAACCCTTATAT
*
32001930 ATTTCCT
1 ATATCCT
32001937 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.42
Consensus pattern (18 bp):
ATATCCTAACCCTTATAT
Found at i:32002362 original size:24 final size:23
Alignment explanation
Indices: 32002335--32002391 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
32002325 CATTTAATAA
32002335 AATAAAAGTTATTTTTA-ATGTTTT
1 AATAAAA-TTATTTTTATAT-TTTT
32002359 AATAGTAAATTATTTTTATATTTTT
1 AATA--AAATTATTTTTATATTTTT
32002384 AATAAAAT
1 AATAAAAT
32002392 AGAATTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 4 0.13
25 17 0.57
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTTTT
Found at i:32005534 original size:125 final size:126
Alignment explanation
Indices: 32005304--32006446 Score: 1531
Period size: 125 Copynumber: 9.1 Consensus size: 126
32005294 GCCAAACATA
* * *
32005304 AACTACTATAGAAAAATAGCGTCGACGTGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTGCATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCATC
* * **
32005368 CTGCTTGAAGTGTTTTTTACACTATTTGTTCAGAATTGTCTTCTCAAAATTA-TTTTTCAGG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* *
32005429 AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTCTCAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
32005494 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGTACCGTCTTCTCAAAATTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * *
32005555 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAG--TTTTTCAATGATTTTGCTGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * ** * * *
32005618 TACTTGAGGTATTTTTGACACTATTTATTCA-AAACCGTCTTCTCAAAATTACTTTTTCATG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAA-CGTCTTCTCAAAATTATTTTTTCAGG
* * *
32005679 AACTACTGTAGAAAAAAAACGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCT-ACTAGTGCATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGAC-AGTGCATC
* * *
32005743 CTGTTTGAAGCATTTTTGACACTATTTGTTCAGAAATGTCTTCTCAAAATTA-TTTTTCAGG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * *
32005804 AACTACTGTAGAAAAAGAGCATCCAGGTGGGAGCTTTTTTCAGTAATTTTACTGACATTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
32005869 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTTAAAATTATTTTTT-AGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * **
32005929 AACTACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTATTGACAGTGCA
1 -A--ACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
*
32005994 TCCTGCTTGAAGCGTTTTTGACACTATTTGATT-AGAATCGTCTTCTCAAAATTATTTTTTCAGG
63 TCCTGCTTGAAGCGTTTTTGACACTATTTG-TTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * * * * *
32006058 AACTACTATAGAAAAAGAGTGTCTACGTAGGAGCTTTTTTTAGTCATTTTGCTGACAATGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
** * * *
32006123 TATTTTAAGCGTTTTTGACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTT-AGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* * * **
32006183 AACTACTGTAGAAAAAGAGCGTCCACCTGGGAG-TTTTTTTAGTAATGTTGCTGACAGTGCATTT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* *
32006247 TGCTTGAAGCGTTTTTTACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* *
32006308 AACTACTGTAGAAATA-AGCGTCCACGTGGGAGC-TTTTTCAGTCATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * *
32006371 TGCTTGAAGTGTTTTT-ACACTAATTGTTTAGAACCGTATTCTCAAAATTATTTTTTCAAG
66 TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
*
32006431 AACTACTGTAAAAAAA
1 AACTACTGTAGAAAAA
32006447 ACAAAATCCT
Statistics
Matches: 898, Mismatches: 103, Indels: 36
0.87 0.10 0.03
Matches are distributed among these distances:
123 53 0.06
124 238 0.27
125 268 0.30
126 219 0.24
127 3 0.00
128 112 0.12
129 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
Found at i:32006555 original size:34 final size:33
Alignment explanation
Indices: 32006504--32006615 Score: 136
Period size: 34 Copynumber: 3.4 Consensus size: 33
32006494 GCAGAATAAT
32006504 ATTTTTTAAAAA-ACTAAACCCTAATTTAATTA
1 ATTTTTTAAAAACACTAAACCCTAATTTAATTA
* * *
32006536 ATTTTCTTAAAAACTCTAAACTCTAATTTAATTT
1 ATTTT-TTAAAAACACTAAACCCTAATTTAATTA
* * *
32006570 ATTTATTTAAAACCCCTAAACCTTAATTTAATTA
1 ATTT-TTTAAAAACACTAAACCCTAATTTAATTA
*
32006604 ATTTTTAAAAAA
1 ATTTTTTAAAAA
32006616 GAACACTAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
32 5 0.07
33 13 0.19
34 48 0.72
35 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (33 bp):
ATTTTTTAAAAACACTAAACCCTAATTTAATTA
Found at i:32007926 original size:52 final size:52
Alignment explanation
Indices: 32007786--32007937 Score: 162
Period size: 52 Copynumber: 2.9 Consensus size: 52
32007776 GGTGTTGAAG
* * *
32007786 GACCATATTGTGTAAGATCGTAA-TTGATGGGTTATGACATCATATGGAAAGAA
1 GACCATATCGTGTAAGATCGTAACTAG-TGGGTTATG-GATCATATGGAAAGAA
* * * * * *
32007839 GGCCATATCGTGTAGGACCATTACTGGTGGGTTATGGATCATATGGAAAGAA
1 GACCATATCGTGTAAGATCGTAACTAGTGGGTTATGGATCATATGGAAAGAA
* **
32007891 GATCATATCGTGTAAGATCGTAACTAGTGTATTATGGCATCATATGG
1 GACCATATCGTGTAAGATCGTAACTAGTGGGTTATGG-ATCATATGG
32007938 GGAAGTTTAA
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
52 43 0.54
53 35 0.44
54 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GACCATATCGTGTAAGATCGTAACTAGTGGGTTATGGATCATATGGAAAGAA
Found at i:32008242 original size:29 final size:29
Alignment explanation
Indices: 32008210--32008313 Score: 122
Period size: 29 Copynumber: 3.7 Consensus size: 29
32008200 GGAATGGTAA
32008210 GCCTTTGTGGCAAATCTCTACAAGGAAAT
1 GCCTTTGTGGCAAATCTCTACAAGGAAAT
* * *
32008239 GCCTTCGTGGCAAATCTCTGCAAGAAAAT
1 GCCTTTGTGGCAAATCTCTACAAGGAAAT
* * *
32008268 GCCTTTGTGGAAAATCTTTATAAGG-AAT
1 GCCTTTGTGGCAAATCTCTACAAGGAAAT
* *
32008296 GACTTTATGGC-AATCTCT
1 GCCTTTGTGGCAAATCTCT
32008314 GTCAAAGGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
27 6 0.10
28 11 0.18
29 45 0.73
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (29 bp):
GCCTTTGTGGCAAATCTCTACAAGGAAAT
Found at i:32013975 original size:20 final size:20
Alignment explanation
Indices: 32013950--32013989 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32013940 CTTGTACGGG
*
32013950 TTTGCACTTCAGTGCCTCTA
1 TTTGCAATTCAGTGCCTCTA
**
32013970 TTTGCAATTTGGTGCCTCTA
1 TTTGCAATTCAGTGCCTCTA
32013990 CTTCCACTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.42
Consensus pattern (20 bp):
TTTGCAATTCAGTGCCTCTA
Found at i:32015919 original size:18 final size:18
Alignment explanation
Indices: 32015896--32015931 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32015886 GCTTGCTTAG
*
32015896 AAAACTTGCCATGTTTAA
1 AAAACTTACCATGTTTAA
32015914 AAAACTTACCATGTTTAA
1 AAAACTTACCATGTTTAA
32015932 GTTAGCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (18 bp):
AAAACTTACCATGTTTAA
Found at i:32016579 original size:14 final size:14
Alignment explanation
Indices: 32016543--32016571 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32016533 ATATTGTATA
32016543 TTCATTATTATTTT
1 TTCATTATTATTTT
32016557 TTCATTATTATTTT
1 TTCATTATTATTTT
32016571 T
1 T
32016572 CTCTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCATTATTATTTT
Found at i:32018071 original size:14 final size:14
Alignment explanation
Indices: 32018052--32018078 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32018042 TTCAATAAAA
32018052 TATAAATTCAGTAC
1 TATAAATTCAGTAC
32018066 TATAAATTCAGTA
1 TATAAATTCAGTA
32018079 ATTTTTTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (14 bp):
TATAAATTCAGTAC
Found at i:32048460 original size:11 final size:11
Alignment explanation
Indices: 32048440--32048481 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
32048430 ATAAGACCCT
32048440 CTCAATCATCC
1 CTCAATCATCC
*
32048451 CTCAAGCATCC
1 CTCAATCATCC
*
32048462 CTCAATCATTC
1 CTCAATCATCC
*
32048473 CTCATTCAT
1 CTCAATCAT
32048482 TCTCATCACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.26, C:0.40, G:0.02, T:0.31
Consensus pattern (11 bp):
CTCAATCATCC
Found at i:32060035 original size:43 final size:43
Alignment explanation
Indices: 32059987--32060072 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32059977 GGTTCTTGAG
32059987 AGGAAGCTTCAGCACCTGATGTGATTGTTGGTACATTTTCTAT
1 AGGAAGCTTCAGCACCTGATGTGATTGTTGGTACATTTTCTAT
32060030 AGGAAGCTTCAGCACCTGATGTGATTGTTGGTACATTTTCTAT
1 AGGAAGCTTCAGCACCTGATGTGATTGTTGGTACATTTTCTAT
32060073 CTTTGATACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.37
Consensus pattern (43 bp):
AGGAAGCTTCAGCACCTGATGTGATTGTTGGTACATTTTCTAT
Found at i:32073152 original size:29 final size:28
Alignment explanation
Indices: 32073116--32073193 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
32073106 TCATGAGATT
32073116 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
32073146 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
*
32073173 TGGCACTATGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
32073194 GATTATTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.12
29 34 0.81
30 3 0.07
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:32073455 original size:173 final size:174
Alignment explanation
Indices: 32073147--32073472 Score: 546
Period size: 173 Copynumber: 1.9 Consensus size: 174
32073137 AATTGTACAG
* * * *
32073147 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTATGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
* *
32073212 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
32073277 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
* * * *
32073321 CACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATGC
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
*
32073386 GTGC-AACCCTATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
32073450 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
32073473 ACCTTGAGTT
Statistics
Matches: 141, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 80 0.57
174 61 0.43
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (174 bp):
CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGC
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGA
Found at i:32078384 original size:50 final size:50
Alignment explanation
Indices: 32078308--32078494 Score: 218
Period size: 50 Copynumber: 3.8 Consensus size: 50
32078298 AGAGAATGTG
*
32078308 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAA
* * * *
32078358 GTCCCATGTAAGACCATGTCTGGGACATGGCATAGGCACCTATATGAGAA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAA
* * * * *
32078408 CTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGA--A-AC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCAAGATGAGAA
* * *
32078457 ATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32078495 TGTTATATTC
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
49 33 0.28
50 80 0.69
52 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAA
Found at i:32084105 original size:28 final size:28
Alignment explanation
Indices: 32084042--32084164 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
32084032 ATATTAAGTC
*
32084042 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32084069 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32084097 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32084125 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32084154 CGCACACTTAG
1 CGCACACTTAG
32084165 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32092291 original size:28 final size:28
Alignment explanation
Indices: 32092228--32092378 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
32092218 ATATTAAGTC
*
32092228 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32092255 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32092283 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32092311 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32092339 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32092368 CGCACACTTAG
1 CGCACACTTAG
32092379 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32096767 original size:50 final size:49
Alignment explanation
Indices: 32096659--32096827 Score: 142
Period size: 56 Copynumber: 3.3 Consensus size: 49
32096649 ATTTGGGTAA
* *
32096659 AGAGATCCCATGTAAGACCATGTCT-AGGACATGTCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGA-GACATGGC-TTGGCA-CA--GAG---ATG
32096715 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACAGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGC-TTGGCACAGAGATG
** * * * * * *
32096765 AGAGGTCCCCCGTAAGACCATATCTGGGATATGGCATGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCTTGGCACAGAGATG
**
32096814 AGAACTCCCATGTA
1 AGAGGTCCCATGTA
32096828 TTGGCAGTAC
Statistics
Matches: 97, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
49 21 0.22
50 33 0.34
53 3 0.03
55 2 0.02
56 37 0.38
57 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCTTGGCACAGAGATG
Found at i:32115509 original size:45 final size:45
Alignment explanation
Indices: 32115444--32115751 Score: 261
Period size: 45 Copynumber: 6.8 Consensus size: 45
32115434 TATACACCTA
* * * *
32115444 AAATGTGTAAGACTAGAGTTGAAAGATGTTATGACATCATGATAT
1 AAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCATGATAT
**
32115489 AAATGAGTAAGACCATAGTTGAAAGAT-CTTATGGA-ATCACCATA-
1 AAATGAGTAAGACCATAGTTGAAAGATGC-TAT-GACATCATGATAT
* * * * *
32115533 AAGATTAGTGAGACCATA-TATTAAAGATGCTATGGCATCATGCTAT
1 AA-ATGAGTAAGACCATAGT-TGAAAGATGCTATGACATCATGATAT
* *
32115579 AAATGAGTAAAACCATAGTTGAAAGATGCCAT-AGCATCATGATAT
1 AAATGAGTAAGACCATAGTTGAAAGATGCTATGA-CATCATGATAT
* * *
32115624 AAATGAGTAAGCCCATAGCTGAAAGATGCTATCG-CATCATGATAG
1 AAATGAGTAAGACCATAGTTGAAAGATGCTAT-GACATCATGATAT
* * * * * *
32115669 AAATGTGTAAGACCTTGGCTGAAAGATGCTATAACATCATGGTA-
1 AAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCATGATAT
* * * * *
32115713 ACCATTACTAAGACCATAGTTGAAAGACGCTATGCCATC
1 A-AATGAGTAAGACCATAGTTGAAAGATGCTATGACATC
32115752 CTAGTAGTCT
Statistics
Matches: 209, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
44 5 0.02
45 198 0.95
46 6 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCATGATAT
Found at i:32115694 original size:135 final size:135
Alignment explanation
Indices: 32115460--32115709 Score: 292
Period size: 135 Copynumber: 1.9 Consensus size: 135
32115450 GTAAGACTAG
** * *
32115460 AGTTGAAAGATGTTATGACATCATGATATAAATGAGTAAGACCATAGTTGAAAGATCTTATGGAA
1 AGTTGAAAGATGCCATGACATCATGATATAAATGAGTAAGACCATAGCTGAAAGATCTTATCGAA
* * * **
32115525 TCACCATAAAGATTAGTGAGACCATATATTAAAGATGCTATGGCATCATGCTATAAATGAGTAAA
66 TCACCATAAAGATTAGTAAGACCATAGATGAAAGATGCTATAACATCATGCTATAAATGAGTAAA
32115590 ACCAT
131 ACCAT
*
32115595 AGTTGAAAGATGCCAT-AGCATCATGATATAAATGAGTAAGCCCATAGCTGAAAGATGC-TATCG
1 AGTTGAAAGATGCCATGA-CATCATGATATAAATGAGTAAGACCATAGCTGAAAGAT-CTTATCG
* ** * * *
32115658 CATCATGATAGAA-ATGT-GTAAGACCTTGGCTGAAAGATGCTATAACATCATG
64 AATCACCATA-AAGAT-TAGTAAGACCATAGATGAAAGATGCTATAACATCATG
32115710 GTAACCATTA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
134 1 0.01
135 90 0.95
136 4 0.04
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (135 bp):
AGTTGAAAGATGCCATGACATCATGATATAAATGAGTAAGACCATAGCTGAAAGATCTTATCGAA
TCACCATAAAGATTAGTAAGACCATAGATGAAAGATGCTATAACATCATGCTATAAATGAGTAAA
ACCAT
Found at i:32118036 original size:20 final size:20
Alignment explanation
Indices: 32118011--32118051 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32118001 AAGAATGTAA
32118011 AAATAACTACGTCTGCATCT
1 AAATAACTACGTCTGCATCT
32118031 AAATAACTACGTCTGCATCT
1 AAATAACTACGTCTGCATCT
32118051 A
1 A
32118052 GGAAACAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (20 bp):
AAATAACTACGTCTGCATCT
Found at i:32130024 original size:2 final size:2
Alignment explanation
Indices: 32130017--32130050 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
32130007 CATTTCGAAG
* *
32130017 TA TA TA TA TA TA CA TA TA TA TG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32130051 AGTATGCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32130565 original size:28 final size:28
Alignment explanation
Indices: 32130525--32130677 Score: 263
Period size: 28 Copynumber: 5.5 Consensus size: 28
32130515 TAAATTGTAC
32130525 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
32130553 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32130581 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32130609 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32130637 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
32130664 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
32130678 AGACTTAATA
Statistics
Matches: 121, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.19
28 98 0.81
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:32130692 original size:56 final size:56
Alignment explanation
Indices: 32130500--32130677 Score: 268
Period size: 56 Copynumber: 3.2 Consensus size: 56
32130490 GAGATTGGCG
* * * * *
32130500 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32130557 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32130613 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
*
32130668 CTGAGTGTGC
1 CTAAGTGTGC
32130678 AGACTTAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 22 0.20
56 75 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
Found at i:32146487 original size:13 final size:13
Alignment explanation
Indices: 32146469--32146503 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
32146459 GCTCCTTCGT
32146469 TCCTTTGCTTTGC
1 TCCTTTGCTTTGC
32146482 TCCTTTGCTTTGC
1 TCCTTTGCTTTGC
32146495 TCCTTTGCT
1 TCCTTTGCT
32146504 GATGGCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.31, G:0.14, T:0.54
Consensus pattern (13 bp):
TCCTTTGCTTTGC
Found at i:32156106 original size:38 final size:38
Alignment explanation
Indices: 32156062--32156139 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
32156052 CACTATGAAC
*
32156062 CTAATTTCAAAATCCGAATCAAACTCTCGATTCACTAA
1 CTAATTTCAAAATCCAAATCAAACTCTCGATTCACTAA
* *
32156100 CTAATTTCAGAGTCCAAATCAAACTCTCGATTCACTAA
1 CTAATTTCAAAATCCAAATCAAACTCTCGATTCACTAA
32156138 CT
1 CT
32156140 CGATTATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.29
Consensus pattern (38 bp):
CTAATTTCAAAATCCAAATCAAACTCTCGATTCACTAA
Found at i:32157678 original size:69 final size:69
Alignment explanation
Indices: 32157586--32157813 Score: 345
Period size: 69 Copynumber: 3.3 Consensus size: 69
32157576 ATAAATTATT
* * * * *
32157586 TTATCGTGTTTTAGTTTATTTAATGTGCTGTTATGATATGGATTATTGGCTGTCTGAATTTGGAC
1 TTATAGTGTTTAAGTTGATTTAATGTGCTGTTATGATATGGATTATTGGCTGTCCGAATTAGGAC
32157651 ATAA
66 ATAA
32157655 TTATAGTGTTTAAGTTGATTTAATGTGCTGTTATGATATGG---ATTGGCTGTCCGAATTAGGAC
1 TTATAGTGTTTAAGTTGATTTAATGTGCTGTTATGATATGGATTATTGGCTGTCCGAATTAGGAC
32157717 ATAA
66 ATAA
* * *
32157721 TTATAGTGTTTAAGTTGATTTAATGCGCTGCTATGATATGGATTATTGGCTGTCCGAAGTAGGAC
1 TTATAGTGTTTAAGTTGATTTAATGTGCTGTTATGATATGGATTATTGGCTGTCCGAATTAGGAC
*
32157786 ATAT
66 ATAA
32157790 TTATAGTGTTTAAGTTGAATTTAA
1 TTATAGTGTTTAAGTTG-ATTTAA
32157814 ATGCTGTAAT
Statistics
Matches: 146, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
66 62 0.42
69 78 0.53
70 6 0.04
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.43
Consensus pattern (69 bp):
TTATAGTGTTTAAGTTGATTTAATGTGCTGTTATGATATGGATTATTGGCTGTCCGAATTAGGAC
ATAA
Found at i:32157834 original size:69 final size:66
Alignment explanation
Indices: 32157626--32157843 Score: 221
Period size: 69 Copynumber: 3.2 Consensus size: 66
32157616 TTATGATATG
* * * *
32157626 GATTATTGGCTGTCTGAATTTGGACATAATTATAGTGTTTAAGTTGATTTAATGTGCTGT-TATG
1 GATTATTGGCTGTCCGAATTAGGACATAATTATAGTGTTTAAGTTGATTTAA-ATGCTGTATGTG
32157690 -A
65 AA
* *
32157691 TATGGATTGGCTGTCCGAATTAGGACATAATTATAGTGTTTAAGTTGATTT-AATGCGCTGCTAT
1 GAT-TATTGGCTGTCCGAATTAGGACATAATTATAGTGTTTAAGTTGATTTAAAT--GCTG-TAT
*
32157755 GAT-ATG
62 G-TGA-A
* *
32157761 GATTATTGGCTGTCCGAAGTAGGACATATTTATAGTGTTTAAGTTGAATTTAAATGCTGTAATGT
1 GATTATTGGCTGTCCGAATTAGGACATAATTATAGTGTTTAAGTTG-ATTTAAATGCTGT-ATGT
32157826 GGAA
64 -GAA
*
32157830 GATTAAT-GCTGTCC
1 GATTATTGGCTGTCC
32157844 AAAGCATGCA
Statistics
Matches: 127, Mismatches: 13, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
64 1 0.01
65 3 0.02
66 48 0.38
67 1 0.01
68 10 0.08
69 54 0.43
70 7 0.06
71 3 0.02
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (66 bp):
GATTATTGGCTGTCCGAATTAGGACATAATTATAGTGTTTAAGTTGATTTAAATGCTGTATGTGA
A
Found at i:32158149 original size:5 final size:5
Alignment explanation
Indices: 32158139--32158165 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32158129 TGAGCGTTCG
32158139 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
32158166 GAAAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:32161122 original size:51 final size:51
Alignment explanation
Indices: 32160994--32161193 Score: 206
Period size: 51 Copynumber: 3.9 Consensus size: 51
32160984 TAAAAGTGAA
* * *
32160994 AGTAATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-
1 AGTATTGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
32161044 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
1 AGT-ATTGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
32161095 AGTTTTGATCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAT
1 AGTATTGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * * *
32161146 GGTAATGGTCACATGTATAGTACTATGTGTAGGCTACTATGTGAACCG
1 AGTATTGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
32161194 AACATCATTA
Statistics
Matches: 118, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
49 1 0.01
50 40 0.34
51 76 0.64
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
AGTATTGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
Found at i:32161122 original size:101 final size:102
Alignment explanation
Indices: 32161002--32161186 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
32160992 AAAGTAATGG
* * * *
32161002 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGG-ATGATAATGGTCACATGTATAGT
32161065 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTTGA
65 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTTGA
* *
32161103 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATGGTAATGGTCACATGTATAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATGATAATGGTCACATGTATAGTA
*
32161168 CTATGTGTAGGCTACTATG
66 CTATGTGCAGGCTACTATG
32161187 TGAACCGAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.52
102 32 0.43
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATGATAATGGTCACATGTATAGTA
CTATGTGCAGGCTACTATGCGTACCAGATAGTTTTGA
Found at i:32161281 original size:45 final size:45
Alignment explanation
Indices: 32161190--32161282 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
32161180 TACTATGTGA
* * * *
32161190 ACCGAACATCATTAATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTAATTACTAAGGTGGTTGCTATGTGCTAAATCC
*
32161235 ACCGGACATCATTAATTACTAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATTAATTACTAAGGTGGTTGCTATGTGCTAAATCC
32161280 ACC
1 ACC
32161283 AAGTATCTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTAATTACTAAGGTGGTTGCTATGTGCTAAATCC
Found at i:32162523 original size:42 final size:42
Alignment explanation
Indices: 32162476--32162559 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
32162466 ATTATGCATT
32162476 GAGATGGTAAATGTCTAGATGGAAATATGCTTATGATCATAA
1 GAGATGGTAAATGTCTAGATGGAAATATGCTTATGATCATAA
32162518 GAGATGGTAAATGTCTAGATGGAAATATGCTTATGATCATAA
1 GAGATGGTAAATGTCTAGATGGAAATATGCTTATGATCATAA
32162560 AAGGGTGGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (42 bp):
GAGATGGTAAATGTCTAGATGGAAATATGCTTATGATCATAA
Found at i:32164535 original size:25 final size:25
Alignment explanation
Indices: 32164500--32164572 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
32164490 TAGCTTCCTG
*
32164500 TTAATAGCTCTTCGGAGCTTCCCTA
1 TTAATAGCTCTTCGGAGCTTCCCAA
**
32164525 -TAACTAGCTCTTATGAGCTTCCCAA
1 TTAA-TAGCTCTTCGGAGCTTCCCAA
* *
32164550 TTAATGGCTCTCCGGAGCTTCCC
1 TTAATAGCTCTTCGGAGCTTCCC
32164573 GATATTGGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.08
25 33 0.85
26 3 0.08
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (25 bp):
TTAATAGCTCTTCGGAGCTTCCCAA
Found at i:32164638 original size:25 final size:25
Alignment explanation
Indices: 32164610--32164676 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
32164600 TATGGCTCTT
32164610 ATGAGCTTCCCATTATACAGCTCGA-
1 ATGAGCTTCCCATTATACAGCTC-AC
* * *
32164635 ATGAGCTTCCTATTACATAGCTCAC
1 ATGAGCTTCCCATTATACAGCTCAC
* *
32164660 ATGAACTTCCCGTTATA
1 ATGAGCTTCCCATTATA
32164677 AGGCTTGATA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCATTATACAGCTCAC
Found at i:32166640 original size:11 final size:11
Alignment explanation
Indices: 32166623--32166652 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
32166613 TAATTTTTTC
32166623 AAAAAAGAAAA
1 AAAAAAGAAAA
*
32166634 GAAAAAGAAAA
1 AAAAAAGAAAA
32166645 AAAAAAGA
1 AAAAAAGA
32166653 GGAAGGGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:32167737 original size:23 final size:23
Alignment explanation
Indices: 32167689--32167746 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
32167679 TAAAATTTTT
* *
32167689 AAATACTTTTTAATTTCTACAAA
1 AAATAATTTTTAATTACTACAAA
*
32167712 AAATAATTTTTAATTAACTA-ATA
1 AAATAATTTTTAATT-ACTACAAA
32167735 AAAT-ATTTTTAA
1 AAATAATTTTTAA
32167747 AATTAATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.26
23 20 0.65
24 3 0.10
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATAATTTTTAATTACTACAAA
Found at i:32169130 original size:16 final size:16
Alignment explanation
Indices: 32169109--32169140 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32169099 TGACCCTCTA
32169109 AATACAAGAAAAAATT
1 AATACAAGAAAAAATT
32169125 AATACAAGAAAAAATT
1 AATACAAGAAAAAATT
32169141 GGATATACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
AATACAAGAAAAAATT
Found at i:32176048 original size:76 final size:76
Alignment explanation
Indices: 32175922--32176077 Score: 312
Period size: 76 Copynumber: 2.1 Consensus size: 76
32175912 AATTAACCTA
32175922 ATTAGTTAACCTTACTTAAGATTAATCCAATCTCTATGACCTAACATAACATAAATTAGTGAAAT
1 ATTAGTTAACCTTACTTAAGATTAATCCAATCTCTATGACCTAACATAACATAAATTAGTGAAAT
32175987 GAATGGCCATG
66 GAATGGCCATG
32175998 ATTAGTTAACCTTACTTAAGATTAATCCAATCTCTATGACCTAACATAACATAAATTAGTGAAAT
1 ATTAGTTAACCTTACTTAAGATTAATCCAATCTCTATGACCTAACATAACATAAATTAGTGAAAT
32176063 GAATGGCCATG
66 GAATGGCCATG
32176074 ATTA
1 ATTA
32176078 ACACATGCCA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 80 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (76 bp):
ATTAGTTAACCTTACTTAAGATTAATCCAATCTCTATGACCTAACATAACATAAATTAGTGAAAT
GAATGGCCATG
Found at i:32176541 original size:39 final size:39
Alignment explanation
Indices: 32176487--32176562 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
32176477 AAGATAAAAG
*
32176487 TTTGATTTTTGGAGGTTTCTTTTTAAATTTTCCTTATAT
1 TTTGATTTTTGGAGGTTTCCTTTTAAATTTTCCTTATAT
32176526 TTTGATTTTTGGAGGTTTCCTTTTAAATTTTCCTTAT
1 TTTGATTTTTGGAGGTTTCCTTTTAAATTTTCCTTAT
32176563 CTTGAATCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.17, C:0.09, G:0.13, T:0.61
Consensus pattern (39 bp):
TTTGATTTTTGGAGGTTTCCTTTTAAATTTTCCTTATAT
Found at i:32180633 original size:79 final size:81
Alignment explanation
Indices: 32180497--32180681 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32180487 TTGAATGATG
* *
32180497 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32180561 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32180576 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32180638 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32180656 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32180682 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32180695 original size:40 final size:40
Alignment explanation
Indices: 32180498--32180681 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
32180488 TGAATGATGT
* * * *
32180498 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32180538 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32180578 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
32180616 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32180657 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32180682 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32180703 original size:79 final size:79
Alignment explanation
Indices: 32180550--32180714 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32180540 GGACTAAGAT
* * **
32180550 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32180615 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32180629 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32180692 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32180708 CCGAAGG
1 CCGAAGG
32180715 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32188576 original size:79 final size:81
Alignment explanation
Indices: 32188440--32188624 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32188430 TTGAATGATG
* *
32188440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32188504 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32188519 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32188581 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32188599 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32188625 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32188638 original size:40 final size:40
Alignment explanation
Indices: 32188441--32188624 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
32188431 TGAATGATGT
* * * *
32188441 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32188481 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32188521 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
32188559 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32188600 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32188625 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32188646 original size:79 final size:79
Alignment explanation
Indices: 32188493--32188657 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32188483 GGACTAAGAT
* * **
32188493 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32188558 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32188572 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32188635 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32188651 CCGAAGG
1 CCGAAGG
32188658 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32194120 original size:16 final size:16
Alignment explanation
Indices: 32194099--32194134 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
32194089 TAAAACATCC
32194099 TTATGTTCCACAATAA
1 TTATGTTCCACAATAA
32194115 TTATGTTCCACAATAA
1 TTATGTTCCACAATAA
32194131 TTAT
1 TTAT
32194135 TAACTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (16 bp):
TTATGTTCCACAATAA
Found at i:32198463 original size:82 final size:85
Alignment explanation
Indices: 32198364--32198547 Score: 198
Period size: 85 Copynumber: 2.2 Consensus size: 85
32198354 ATAAAATATG
* * * * * *
32198364 TTAAACGGCGAGAATAAATCCCGAAATAGA-AATATTTAA-TT-AAGTCT-TTGTTTGAAATAAA
1 TTAAACGACGGGAATAAATCCCGAAACAGATAATATTTAATTTAAAGTCTAAT-TTGGAAACAAA
*
32198425 TTAATATCGAATAAAATCTTC
65 TTAAAATCGAATAAAATCTTC
* * ** *
32198446 TTAAACGACGGGAATAAATCCTGAAACATATTTTATTTAATTTAAATTCTAATTTGGAAACAAAT
1 TTAAACGACGGGAATAAATCCCGAAACAGATAATATTTAATTTAAAGTCTAATTTGGAAACAAAT
*
32198511 TAAAATCGAATAAAATCTTG
66 TAAAATCGAATAAAATCTTC
32198531 TTAAACGGA-GGGAATAA
1 TTAAAC-GACGGGAATAA
32198548 TTTGGAAACA
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
82 25 0.30
83 7 0.08
84 2 0.02
85 47 0.56
86 3 0.04
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (85 bp):
TTAAACGACGGGAATAAATCCCGAAACAGATAATATTTAATTTAAAGTCTAATTTGGAAACAAAT
TAAAATCGAATAAAATCTTC
Found at i:32198554 original size:50 final size:50
Alignment explanation
Indices: 32198495--32198612 Score: 164
Period size: 50 Copynumber: 2.3 Consensus size: 50
32198485 ATTTAAATTC
* *
32198495 TAATTTGGAAACAAATTAAAATCGAATAAAATCTTGTTAAACGGAGGGAA
1 TAATTTGGAAACAAATTAAAATCGAATAAAATCTTATTAAACAGAGGGAA
** *
32198545 TAATTTGGAAACAAAACAAAATCGAATAAAATCTTATTAAACAGCGGGAA
1 TAATTTGGAAACAAATTAAAATCGAATAAAATCTTATTAAACAGAGGGAA
* *
32198595 TAAGTCTCGAAACAAATT
1 TAA-TTTGGAAACAAATT
32198613 TTATTTAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
50 48 0.83
51 10 0.17
ACGTcount: A:0.49, C:0.11, G:0.15, T:0.25
Consensus pattern (50 bp):
TAATTTGGAAACAAATTAAAATCGAATAAAATCTTATTAAACAGAGGGAA
Found at i:32198643 original size:84 final size:84
Alignment explanation
Indices: 32198545--32199537 Score: 859
Period size: 84 Copynumber: 12.0 Consensus size: 84
32198535 ACGGAGGGAA
* * * * * *
32198545 TAATTTGGAAACAAAACAAAATCGAATAAAATCTTATTAAACAGCGGGAATAAGTCTCGAAACAA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32198610 ATTTTATTTAATTTAATTC
66 ATTTTATTTAATTTAATTC
* * **
32198629 TAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAACGATGAGAATAAATCCCGAAACAA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32198694 ATTTTATTTAATTTAATTC
66 ATTTTATTTAATTTAATTC
* * *
32198713 TAATTTGGAAACAAAATAAAATAGAATAAAATCTTGTTAATCGGC-AGGAATAAATCCTGAAACA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGA-GAATAAATCCCGAAACA
*
32198777 GA-TTTATTTAATTTAATTC
65 AATTTTATTTAATTTAATTC
* ** * *
32198796 TAATTTTGAAACAAAATAAAATTAAATAAAATCTTGTTAAACGGCGGGAATAAATCCAGAAACAA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32198861 ATTTTATTTAATTTAATTC
66 ATTTTATTTAATTTAATTC
* * *
32198880 TAATTTGGAAACAAAATAAAATTGAATAAAATATTGTTAAACTGCGAGAATAAATCCCGAAACAA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32198945 ATTTTATTTAATTTAATTC
66 ATTTTATTTAATTTAATTC
* *
32198964 TAAATTT-GAAATAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAAAATAAATCCCGAAACA
1 T-AATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACA
32199028 AATTTTATTTAATTTAATTC
65 AATTTTATTTAATTTAATTC
* * * * * *
32199048 TAATTT----A-GAAAT--AA---AATAAAATCTTGTTAATCCGCGGGAATAAATCTCAAAACAA
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32199103 ATTTTATTTAATTTTAATTTC
66 ATTTTATTTAA-TTTAA-TTC
* * * * * * *
32199124 TCATTTTGGCAACAAAATCAAAAT-GTGATAAAATC-CGTTGAACGGCGAGATTAAATCTCGAAA
1 T-AATTTGGAAACAAAAT-AAAATCG-AATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAA
* *
32199187 TAGATTTTATTTAACTTTAATTTC
63 CAAATTTTATTTAA-TTTAA-TTC
** * * ** * * * * *
32199211 TTGTTT-GAAAAAAAATAAAAT-AAAGGAAA-CTTCCATTGAACAGCGGGAATAAATCCCAAAAC
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTT--GTTAAACGGCGAGAATAAATCCCGAAAC
* *
32199273 AATTTTTATTTTAATTTTAATAC
64 AAATTTTA-TTTAA-TTTAATTC
** * * * * *
32199296 TCGTTTTGGAAATAAAATCAAAATTGGAATAAAATC-CGTTGAACGAC-ATGAATAAATCCCGAA
1 T-AATTTGGAAACAAAAT-AAAA-TCGAATAAAATCTTGTTAAACGGCGA-GAATAAATCCCGAA
* **
32199359 ACAGATTTTATTCGA--T--TT-
62 ACAAATTTTATTTAATTTAATTC
* * * * *
32199377 TAATTTGGAAAC-----AAAATCGAATAAAAT-ATGTTAAACGACGGGAATAAATCCTGAAACAG
1 TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
32199436 ATTTTATTTAATTTTAATAT-
66 ATTTTATTTAA-TTTAAT-TC
** * * * * * *
32199456 TCGTTTGGAAATAAAAATAAAATAAAGAATAAAATC-TGTTGAACAGCGGGGAT-AATCCCGAAA
1 TAATTTGGAAA-CAAAATAAAAT--CGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAA
32199519 -AAGATTTTATTTAATTTAA
63 CAA-ATTTTATTTAATTTAA
32199538 AATTTTATTT
Statistics
Matches: 751, Mismatches: 111, Indels: 93
0.79 0.12 0.10
Matches are distributed among these distances:
73 45 0.06
74 50 0.07
75 5 0.01
76 5 0.01
77 6 0.01
78 1 0.00
79 14 0.02
80 9 0.01
81 2 0.00
82 6 0.01
83 85 0.11
84 307 0.41
85 56 0.07
86 36 0.05
87 77 0.10
88 40 0.05
89 1 0.00
90 5 0.01
91 1 0.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.33
Consensus pattern (84 bp):
TAATTTGGAAACAAAATAAAATCGAATAAAATCTTGTTAAACGGCGAGAATAAATCCCGAAACAA
ATTTTATTTAATTTAATTC
Found at i:32198691 original size:135 final size:135
Alignment explanation
Indices: 32198430--32198694 Score: 376
Period size: 135 Copynumber: 2.0 Consensus size: 135
32198420 ATAAATTAAT
* *
32198430 ATCGAATAAAATCTTCTTAAACGACGGGAATAAATCCTGAAACATATTTTATTTAATTTAAATTC
1 ATCGAATAAAATCTTATTAAACGACGGGAATAAATCCTGAAACAAATTTTATTTAATTTAAATTC
* * * * ***
32198495 TAATTTGGAAACAAATTAAAATCGAATAAAATCTTGTTAAACGGAGGGAATAATTTGGAAACAAA
66 TAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAACGGAGAGAATAATCCCGAAACAAA
32198560 ACAAA
131 ACAAA
*
32198565 ATCGAATAAAATCTTATTAAAC-AGCGGGAATAAGT-CTCGAAACAAATTTTATTTAATTT-AAT
1 ATCGAATAAAATCTTATTAAACGA-CGGGAATAAATCCT-GAAACAAATTTTATTTAATTTAAAT
32198627 TCTAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAAC-GATGAGAATAAATCCCGAAA
64 TCTAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAACGGA-GAGAAT-AATCCCGAAA
32198691 CAAA
127 CAAA
32198695 TTTTATTTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
133 2 0.02
134 52 0.45
135 62 0.53
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (135 bp):
ATCGAATAAAATCTTATTAAACGACGGGAATAAATCCTGAAACAAATTTTATTTAATTTAAATTC
TAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAACGGAGAGAATAATCCCGAAACAAA
ACAAA
Found at i:32198995 original size:251 final size:249
Alignment explanation
Indices: 32198545--32199537 Score: 857
Period size: 251 Copynumber: 4.0 Consensus size: 249
32198535 ACGGAGGGAA
* * * * *
32198545 TAATTTGGAAACAAAACAAAATCGAATAAAATCTTATTAAACAGCGGGAATAAGTCTC-GAAACA
1 TAATTTTGAAACAAAATAAAAT-AAATAAAATCTTGTTAAACAGCGGGAATAAATCTCAGAAACA
** * *
32198609 AATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATCAAATAAAATCTTATTAAACGAT
65 AATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATTGAATAAAAT-TTGTTAAACG-C
*
32198674 GAGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATAGAA
128 GAGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTT-GAAAAAAAATAAAATAGAA
* * * *
32198739 TAAAATCTTGTTAATCGGC-AGGAATAAATCCTGAAACAGA-TTTATTTAATTTAATTC
192 TAAAATCTTGTTAAACGGCGA-AAATAAATCCCGAAACAAATTTTATTTAATTTAATTC
*
32198796 TAATTTTGAAACAAAATAAAATTAAATAAAATCTTGTTAAACGGCGGGAATAAATC-CAGAAACA
1 TAATTTTGAAACAAAATAAAA-TAAATAAAATCTTGTTAAACAGCGGGAATAAATCTCAGAAACA
32198860 AATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATTGAATAAAATATTGTTAAACTGC
65 AATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATTGAATAAAAT-TTGTTAAAC-GC
* *
32198925 GAGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAAATTTGAAATAAAATAAAATCGAA
128 GAGAATAAATCCCGAAACAAATTTTATTTAATTTAATTCT-AATTTGAAAAAAAATAAAATAGAA
32198990 TAAAATCTTGTTAAACGGCGAAAATAAATCCCGAAACAAATTTTATTTAATTTAATTC
192 TAAAATCTTGTTAAACGGCGAAAATAAATCCCGAAACAAATTTTATTTAATTTAATTC
* * *
32199048 TAA-TTT---A-GAAAT---A-AAATAAAATCTTGTTAATCCGCGGGAATAAATCTCA-AAACAA
1 TAATTTTGAAACAAAATAAAATAAATAAAATCTTGTTAAACAGCGGGAATAAATCTCAGAAACAA
* * ** *
32199103 ATTTTATTTAATTTTAATTTCTCATTTTGGCAACAAAATCAAAATGTG-ATAAAATCCGTTGAAC
66 ATTTTATTTAA-TTTAA-TTCT-AATTTGGAAACAAAAT-AAAAT-TGAATAAAATTTGTTAAAC
* * * * **
32199167 GGCGAGATTAAATCTCGAAATAGATTTTATTTAACTTTAATTTCTTGTTTGAAAAAAAATAAAAT
126 -GCGAGAATAAATCCCGAAACAAATTTTATTTAA-TTTAA-TTCTAATTTGAAAAAAAATAAAAT
** * * * ** * * *
32199232 A-AAGGAAA-CTTCCATTGAACAGCGGGAATAAATCCCAAAACAATTTTTATTTTAATTTTAATA
188 AGAATAAAATCTT--GTTAAACGGCGAAAATAAATCCCGAAACAAATTTTA-TTTAA-TTTAATT
32199295 C
249 C
** * * * * ** *
32199296 TCGTTTTGGAAATAAAATCAAAATTGGAATAAAATC-CGTTGAAC-GACATGAATAAATC-CCGA
1 TAATTTT-GAAACAAAAT-AAAA-T-AAATAAAATCTTGTTAAACAG-CGGGAATAAATCTCAGA
* ** * *
32199358 AACAGATTTTATTCGA--T--TT-TAATTTGGAAAC-----AAAATCGAATAAAATATGTTAAAC
61 AACAAATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATTGAATAAAATTTGTTAAAC
* * * **
32199413 GACGGGAATAAATCCTGAAACAGATTTTATTTAATTTTAATAT-TCGTTTGGAAATAAAAATAAA
126 G-CGAGAATAAATCCCGAAACAAATTTTATTTAA-TTTAAT-TCTAATTT-GAAA-AAAAATAAA
* * ***
32199477 ATAAAGAATAAAATC-TGTTGAACAGCGGGGAT-AATCCCGAAA-AAGATTTTATTTAATTTAA
186 AT--AGAATAAAATCTTGTTAAACGGCGAAAATAAATCCCGAAACAA-ATTTTATTTAATTTAA
32199538 AATTTTATTT
Statistics
Matches: 623, Mismatches: 76, Indels: 92
0.79 0.10 0.12
Matches are distributed among these distances:
242 48 0.08
243 7 0.01
244 8 0.01
245 67 0.11
246 125 0.20
247 40 0.06
248 23 0.04
249 4 0.01
250 7 0.01
251 207 0.33
252 37 0.06
253 2 0.00
254 6 0.01
257 1 0.00
258 1 0.00
259 2 0.00
260 29 0.05
261 9 0.01
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.33
Consensus pattern (249 bp):
TAATTTTGAAACAAAATAAAATAAATAAAATCTTGTTAAACAGCGGGAATAAATCTCAGAAACAA
ATTTTATTTAATTTAATTCTAATTTGGAAACAAAATAAAATTGAATAAAATTTGTTAAACGCGAG
AATAAATCCCGAAACAAATTTTATTTAATTTAATTCTAATTTGAAAAAAAATAAAATAGAATAAA
ATCTTGTTAAACGGCGAAAATAAATCCCGAAACAAATTTTATTTAATTTAATTC
Found at i:32199194 original size:87 final size:86
Alignment explanation
Indices: 32199085--32199382 Score: 254
Period size: 87 Copynumber: 3.4 Consensus size: 86
32199075 TAATCCGCGG
* * * *
32199085 GAATAAATCTCAAAACAAATTTTATTTAATTTTAATTTCTCATTTTGGCAACAAAATCAAAATGT
1 GAATAAATCCCAAAACAGATTTTATTTAATTTTAATTTCTC-TTTTGGAAAAAAAATCAAAATGT
32199150 GATAAAATCCGTTGAACGGCGA
65 GATAAAATCCGTTGAACGGCGA
* * * * *
32199172 GATTAAATCTCGAAATAGATTTTATTTAACTTTAATTTCT-TGTTT-GAAAAAAAAT-AAAATAA
1 GAATAAATCCCAAAACAGATTTTATTTAATTTTAATTTCTCT-TTTGGAAAAAAAATCAAAAT--
** * * *
32199234 AG-GA-AACTTCCATTGAACAGCGG
63 -GTGATAAAATCCGTTGAACGGCGA
* *
32199257 GAATAAATCCCAAAACA-ATTTTTATTTTAATTTTAA-TACTCGTTTTGGAAATAAAATCAAAAT
1 GAATAAATCCCAAAACAGA-TTTTA-TTTAATTTTAATTTCTC-TTTTGGAAAAAAAATCAAAAT
*
32199320 -TGGAATAAAATCCGTTGAACGAC-A
63 GT-G-ATAAAATCCGTTGAACGGCGA
* **
32199344 TGAATAAATCCCGAAACAGATTTTATTCGATTTTAATTT
1 -GAATAAATCCCAAAACAGATTTTATTTAATTTTAATTT
32199383 GGAAACAAAA
Statistics
Matches: 165, Mismatches: 29, Indels: 33
0.73 0.13 0.15
Matches are distributed among these distances:
84 6 0.04
85 44 0.27
86 19 0.12
87 56 0.34
88 39 0.24
89 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (86 bp):
GAATAAATCCCAAAACAGATTTTATTTAATTTTAATTTCTCTTTTGGAAAAAAAATCAAAATGTG
ATAAAATCCGTTGAACGGCGA
Found at i:32199404 original size:172 final size:172
Alignment explanation
Indices: 32198584--32199392 Score: 439
Period size: 167 Copynumber: 4.8 Consensus size: 172
32198574 AATCTTATTA
* * * *
32198584 AACAGCGGGAATAAGTCTCGAAACAAATTTTATTTAA-TTTAATT-CT-AATTTGGAAACAAAAT
1 AACAGCGGGAATAAATCCCAAAACAAATTTTATTTAATTTTAATTACTCATTTTGGAAACAAAAT
*** ** * * * *
32198646 -AAAATCAAATAAAATCTTATTAAACGATGAGAATAAATCCCGAAACAAATTTTATTTAA-TTTA
66 CAAAATGTGATAAAATC-CGTTGAACGACGAGAATAAATCCCGAAACAGATTTTATTCAACTTTA
* * * *
32198709 ATTCTAATTTGGAAACAAAATAAAATAGAAT-AA--AATCTT--GTT-
130 A-T-T--TCTGGAAACAAAA-AAAATAAAATAAAGGAAACTTCCATTG
* * ** * *
32198751 AATCGGCAGGAATAAATCCTGAAACAGA-TTTATTTAA-TTTAATT-CTAATTTT-GAAACAAAA
1 AA-CAGCGGGAATAAATCCCAAAACAAATTTTATTTAATTTTAATTACTCATTTTGGAAACAAAA
* * * * * * * *
32198812 T-AAAAT-TAAATAAAATCTTGTTAAACGGCGGGAATAAATCCAGAAACAAATTTTATTTAA-TT
65 TCAAAATGT-GATAAAATC-CGTTGAACGACGAGAATAAATCCCGAAACAGATTTTATTCAACTT
* ** * * *
32198874 TAATTCTAATTTGGAAACAAAATAAAATTGAATAAA--ATA-TT--GTTA
128 TAA-T-T--TCTGGAAACAAAA-AAAATAAAATAAAGGAAACTTCCATTG
* * * * * *
32198919 AACTGCGAGAATAAATCCCGAAACAAATTTTATTTAA-TTTAATT-CTAAATTT-GAAATAAAAT
1 AACAGCGGGAATAAATCCCAAAACAAATTTTATTTAATTTTAATTACTCATTTTGGAAACAAAAT
* * * * * * *
32198981 -AAAATCG-AATAAAATCTTGTTAAACGGCGAAAATAAATCCCGAAACAAATTTTATTTAA-TTT
66 CAAAAT-GTGATAAAATC-CGTTGAACGACGAGAATAAATCCCGAAACAGATTTTATTCAACTTT
*** * * *
32199043 AA-TTCT---AA-TTTAGAAATAAAAT-AA--AATCTT--GTT-
129 AATTTCTGGAAACAAAAAAAATAAAATAAAGGAAACTTCCATTG
* * * *
32199076 AATCCGCGGGAATAAATCTCAAAACAAATTTTATTTAATTTTAATTTCTCATTTTGGCAACAAAA
1 AA-CAGCGGGAATAAATCCCAAAACAAATTTTATTTAATTTTAATTACTCATTTTGGAAACAAAA
* * * * *
32199141 TCAAAATGTGATAAAATCCGTTGAACGGCGAGATTAAATCTCGAAATAGATTTTATTTAACTTTA
65 TCAAAATGTGATAAAATCCGTTGAACGACGAGAATAAATCCCGAAACAGATTTTATTCAACTTTA
* ****
32199206 ATTTCTTGTTTGAAAAAAAATAAAATAAAGGAAACTTCCATTG
130 ATTTCTGGAAACAAAAAAAATAAAATAAAGGAAACTTCCATTG
* * *
32199249 AACAGCGGGAATAAATCCCAAAACAATTTTTATTTTAATTTTAA-TACTCGTTTTGGAAATAAAA
1 AACAGCGGGAATAAATCCCAAAACAAATTTTA-TTTAATTTTAATTACTCATTTTGGAAACAAAA
* *
32199313 TCAAAAT-TGGAATAAAATCCGTTGAACGAC-ATGAATAAATCCCGAAACAGATTTTATTCGATT
65 TCAAAATGT-G-ATAAAATCCGTTGAACGACGA-GAATAAATCCCGAAACAGATTTTATTCAACT
32199376 TTAA-TT-TGGAAACAAAA
127 TTAATTTCTGGAAACAAAA
32199393 TCGAATAAAA
Statistics
Matches: 533, Mismatches: 78, Indels: 58
0.80 0.12 0.09
Matches are distributed among these distances:
157 5 0.01
158 43 0.08
159 8 0.02
160 8 0.02
161 44 0.08
162 18 0.03
163 6 0.01
165 1 0.00
167 151 0.28
168 121 0.23
170 5 0.01
171 7 0.01
172 56 0.11
173 60 0.11
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (172 bp):
AACAGCGGGAATAAATCCCAAAACAAATTTTATTTAATTTTAATTACTCATTTTGGAAACAAAAT
CAAAATGTGATAAAATCCGTTGAACGACGAGAATAAATCCCGAAACAGATTTTATTCAACTTTAA
TTTCTGGAAACAAAAAAAATAAAATAAAGGAAACTTCCATTG
Found at i:32202090 original size:21 final size:22
Alignment explanation
Indices: 32202065--32202118 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 22
32202055 GTTTTTTTAT
*
32202065 TTTTATATTATAATAA-TATAA
1 TTTTATATTAAAATAATTATAA
32202086 TTTTATCCAATTAAAATAATTATAA
1 TTTTAT---ATTAAAATAATTATAA
32202111 TTTT-TATT
1 TTTTATATT
32202119 TTTTTAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
21 9 0.32
24 10 0.36
25 9 0.32
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTATATTAAAATAATTATAA
Found at i:32203346 original size:17 final size:17
Alignment explanation
Indices: 32203321--32203360 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
32203311 ACATTAAACA
32203321 ATAAATAAAAAACATAT
1 ATAAATAAAAAACATAT
* *
32203338 ATAATTAAAAAATATAT
1 ATAAATAAAAAACATAT
*
32203355 TTAAAT
1 ATAAAT
32203361 GAATTGATGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAATAAAAAACATAT
Found at i:32209236 original size:30 final size:30
Alignment explanation
Indices: 32209191--32209255 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
32209181 ACTGCAGGGG
*
32209191 TCACACGGCCGTATGACCAGGCCGTGTGGC
1 TCACACGGCCGTATGACCAAGCCGTGTGGC
* *
32209221 TCACTCGGTCGTATGACCAAGCCGTGTGGC
1 TCACACGGCCGTATGACCAAGCCGTGTGGC
32209251 TCACA
1 TCACA
32209256 TGGCTAAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.20
Consensus pattern (30 bp):
TCACACGGCCGTATGACCAAGCCGTGTGGC
Found at i:32210892 original size:7 final size:7
Alignment explanation
Indices: 32210880--32210904 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32210870 AGAGAGCATT
32210880 GATACGA
1 GATACGA
32210887 GATACGA
1 GATACGA
32210894 GATACGA
1 GATACGA
32210901 GATA
1 GATA
32210905 GTAGTGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (7 bp):
GATACGA
Found at i:32216553 original size:26 final size:26
Alignment explanation
Indices: 32216505--32216566 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
32216495 CCTGTAAGTG
*
32216505 TTCTAAAACTGATACATGCTATGATA
1 TTCTGAAACTGATACATGCTATGATA
* * *
32216531 TTCTGAAACTTATATATGTTATGATA
1 TTCTGAAACTGATACATGCTATGATA
32216557 TTCTGAAACT
1 TTCTGAAACT
32216567 ACTGTAGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (26 bp):
TTCTGAAACTGATACATGCTATGATA
Found at i:32223472 original size:40 final size:40
Alignment explanation
Indices: 32223427--32223581 Score: 231
Period size: 40 Copynumber: 3.9 Consensus size: 40
32223417 AACACACTAG
* * *
32223427 ACAGAAGCTTATAAGAGTTGATCCAACTGAAACACGTCAA
1 ACAGAAGCTCATAAGAGCTGATCCAACTGAAACACGCCAA
* *
32223467 ACAGAAGCTCATAAGAGTTGATCCAACTGAAACTCGCCAA
1 ACAGAAGCTCATAAGAGCTGATCCAACTGAAACACGCCAA
*
32223507 ACAAAAGCTCATAAGAGCT-AGTCCAACTGAAACACGCCAA
1 ACAGAAGCTCATAAGAGCTGA-TCCAACTGAAACACGCCAA
*
32223547 ACAGAAGCTCATAAGAGCTGATCCAACCGAAACAC
1 ACAGAAGCTCATAAGAGCTGATCCAACTGAAACAC
32223582 ACCAGACAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.43, C:0.25, G:0.17, T:0.15
Consensus pattern (40 bp):
ACAGAAGCTCATAAGAGCTGATCCAACTGAAACACGCCAA
Found at i:32223591 original size:80 final size:80
Alignment explanation
Indices: 32223411--32223591 Score: 249
Period size: 80 Copynumber: 2.3 Consensus size: 80
32223401 ATCATTAGAT
* * * * *
32223411 CAACCG-AACACACTAGACAGAAGCTTATAAGAGTTGATCCAACTGAAACACGTCAAACAGAAGC
1 CAACCGAAACACACCAGACAAAAGCTCATAAGAGTAGATCCAACTGAAACACGCCAAACAGAAGC
*
32223475 TCATAAGAGTTGATC
66 TCATAAGAGCTGATC
* * * *
32223490 CAACTGAAACTCGCCAAACAAAAGCTCATAAGAGCTAG-TCCAACTGAAACACGCCAAACAGAAG
1 CAACCGAAACACACCAGACAAAAGCTCATAAGAG-TAGATCCAACTGAAACACGCCAAACAGAAG
32223554 CTCATAAGAGCTGATC
65 CTCATAAGAGCTGATC
32223570 CAACCGAAACACACCAGACAAA
1 CAACCGAAACACACCAGACAAA
32223592 GAGTATAACA
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 5 0.06
80 79 0.92
81 2 0.02
ACGTcount: A:0.44, C:0.27, G:0.16, T:0.14
Consensus pattern (80 bp):
CAACCGAAACACACCAGACAAAAGCTCATAAGAGTAGATCCAACTGAAACACGCCAAACAGAAGC
TCATAAGAGCTGATC
Found at i:32224550 original size:42 final size:42
Alignment explanation
Indices: 32224491--32224574 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
32224481 CAACCCCTTG
32224491 AAGAAGAAAACCATTATGTTTTCTTATATTTAAACCTTTTAT
1 AAGAAGAAAACCATTATGTTTTCTTATATTTAAACCTTTTAT
*
32224533 AAGAAGAAAACCGTTATGTTTTCTTATATTTAAACCTTTTAT
1 AAGAAGAAAACCATTATGTTTTCTTATATTTAAACCTTTTAT
32224575 TCTTTTATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (42 bp):
AAGAAGAAAACCATTATGTTTTCTTATATTTAAACCTTTTAT
Found at i:32224578 original size:21 final size:19
Alignment explanation
Indices: 32224553--32224605 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
32224543 CCGTTATGTT
32224553 TTCTTATATTTAAACCTTTTA
1 TTCTTATATTTAAA--TTTTA
* *
32224574 TTCTTTTATTTTAATTTTA
1 TTCTTATATTTAAATTTTA
32224593 TTACTTAT-TTTAA
1 TT-CTTATATTTAA
32224606 TTATTTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 11 0.41
20 4 0.15
21 12 0.44
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.64
Consensus pattern (19 bp):
TTCTTATATTTAAATTTTA
Found at i:32231842 original size:21 final size:21
Alignment explanation
Indices: 32231818--32231860 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32231808 TAATAGCAAA
* *
32231818 ATTTTACCATTAAATAAAATT
1 ATTTTAACAATAAATAAAATT
32231839 ATTTTAACAATAAATAAAATT
1 ATTTTAACAATAAATAAAATT
32231860 A
1 A
32231861 AATCGATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTTAACAATAAATAAAATT
Found at i:32234854 original size:43 final size:43
Alignment explanation
Indices: 32234787--32234991 Score: 301
Period size: 43 Copynumber: 4.8 Consensus size: 43
32234777 GCGTCGCTAA
32234787 CTTTAGCGGCG--TTTCTCCATCAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTC-CCA-CAAACGCCGCTAAAGACCAAGAC
* *
32234830 CTTCAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* *
32234873 CTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAGATCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
*
32234916 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA--ATAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-AGAC
*
32234958 CTTTAGCGGCGCTTTTCACACAAACGCCGCTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
32234992 AAATATCTTT
Statistics
Matches: 149, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.01
42 36 0.24
43 105 0.70
44 3 0.02
45 4 0.03
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:32235309 original size:43 final size:43
Alignment explanation
Indices: 32235261--32235351 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
32235251 ACATATGCAA
* * *
32235261 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
*
32235304 GGTAATAAAATATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
32235347 -GTAAT
1 GGTAAT
32235352 GAACTCAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 5 0.11
43 39 0.89
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (43 bp):
GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:32247054 original size:14 final size:14
Alignment explanation
Indices: 32247030--32247069 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
32247020 ACATATCTTG
32247030 CCATA-GGTCTTAA
1 CCATATGGTCTTAA
32247043 CCATATGGTCTTAA
1 CCATATGGTCTTAA
*
32247057 CCACATGGTCTTA
1 CCATATGGTCTTA
32247070 CACACATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (14 bp):
CCATATGGTCTTAA
Found at i:32248824 original size:49 final size:49
Alignment explanation
Indices: 32248757--32248981 Score: 132
Period size: 50 Copynumber: 4.4 Consensus size: 49
32248747 GCTATGTCCT
* * *
32248757 AGACATAGTCTTATATGGGATGTTTCT-TATA-CTGCCAATGTCATATCCC
1 AGACATGGTCTTACATGGGA-G-TTCTATATAGCTGCCAATGCCATATCCC
* * * *
32248806 AGATATGGTCTTACATGGGAGTTCTAATATAGGTGCCCATGCCATGTCCC
1 AGACATGGTCTTACATGGGAGTTCT-ATATAGCTGCCAATGCCATATCCC
** ** * * * * * *
32248856 AGACATGGTCTTACGGGGGACCTCTCGTCTTGATGCCAACGCCAT-GCCC
1 AGACATGGTCTTACATGGGAGTTCT-ATATAGCTGCCAATGCCATATCCC
* * * *
32248905 AAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCC
1 -AGACATGGTCTTACATGGGA-GT-TC-T-ATAT--A-GCTGCCAATGCCATATCCC
32248962 AGACATGGTCTTACATGGGA
1 AGACATGGTCTTACATGGGA
32248982 TCTCTTTACC
Statistics
Matches: 137, Mismatches: 28, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
47 4 0.03
48 1 0.01
49 24 0.18
50 65 0.47
51 1 0.01
52 2 0.01
53 4 0.03
56 33 0.24
57 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (49 bp):
AGACATGGTCTTACATGGGAGTTCTATATAGCTGCCAATGCCATATCCC
Found at i:32248864 original size:50 final size:51
Alignment explanation
Indices: 32248789--32248981 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 51
32248779 TTTCTTATAC
* * * * *
32248789 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGA-GTTCTAATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTAATATAGA
* ** ** * *
32248839 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACC-TCTCGTCTTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTAATATAGA
* *
32248889 TGCCAACGCCATG-CCCAAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGACCT-TC-TAATAT--A-GA
32248945 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
32248982 TCTCTTTACC
Statistics
Matches: 114, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
49 3 0.03
50 68 0.60
52 2 0.02
53 4 0.04
56 34 0.30
57 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTAATATAGA
Found at i:32252578 original size:11 final size:12
Alignment explanation
Indices: 32252551--32252575 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32252541 GAAATTGTGT
32252551 AATAATTATGAA
1 AATAATTATGAA
32252563 AATAATTATGAA
1 AATAATTATGAA
32252575 A
1 A
32252576 TAAGAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AATAATTATGAA
Found at i:32253187 original size:7 final size:7
Alignment explanation
Indices: 32253175--32253236 Score: 124
Period size: 7 Copynumber: 8.9 Consensus size: 7
32253165 TAGTAAACAA
32253175 TAATATT
1 TAATATT
32253182 TAATATT
1 TAATATT
32253189 TAATATT
1 TAATATT
32253196 TAATATT
1 TAATATT
32253203 TAATATT
1 TAATATT
32253210 TAATATT
1 TAATATT
32253217 TAATATT
1 TAATATT
32253224 TAATATT
1 TAATATT
32253231 TAATAT
1 TAATAT
32253237 AGTATGTATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 55 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAATATT
Found at i:32254519 original size:29 final size:31
Alignment explanation
Indices: 32254455--32254528 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 31
32254445 ACTACCAAAA
*
32254455 TAGTCACTTTTGTTTGGCACAAGTTACATTT
1 TAGTCACTTATGTTTGGCACAAGTTACATTT
*
32254486 TAGTCACTTATGTTT-G-A-AATGTTACGTTT
1 TAGTCACTTATGTTTGGCACAA-GTTACATTT
32254515 TAGTCACTTATGTT
1 TAGTCACTTATGTT
32254529 ATCACGTTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 2 0.05
29 23 0.57
30 1 0.03
31 14 0.35
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (31 bp):
TAGTCACTTATGTTTGGCACAAGTTACATTT
Found at i:32254550 original size:31 final size:29
Alignment explanation
Indices: 32254480--32254553 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
32254470 GGCACAAGTT
* *
32254480 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
32254509 ACGTTTTAGTCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
32254540 ACATTTTAGTCACT
1 ACATTTTAGTCACT
32254554 GAGCCGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:32265249 original size:45 final size:46
Alignment explanation
Indices: 32265158--32265250 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
32265148 GAACATATGT
32265158 TAGGTGAGAGTTCAGTTTAGTTGATTCATGCAGCTACACTAGGACC
1 TAGGTGAGAGTTCAGTTTAGTTGATTCATGCAGCTACACTAGGACC
32265204 TAGGTGAGAGTTCAGTTTAGTTGATT-ATGCAGCTACACTAGGACC
1 TAGGTGAGAGTTCAGTTTAGTTGATTCATGCAGCTACACTAGGACC
32265249 TA
1 TA
32265251 TCCTAGGGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 21 0.45
46 26 0.55
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (46 bp):
TAGGTGAGAGTTCAGTTTAGTTGATTCATGCAGCTACACTAGGACC
Found at i:32266046 original size:22 final size:20
Alignment explanation
Indices: 32265972--32266042 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
32265962 GAAATATTAT
32265972 AAAATTATTAAAGATTAC-A
1 AAAATTATTAAAGATTACTA
* *
32265991 AAAATAATTTATAAAATTTA-TA
1 AAAATTA-TTA-AAGA-TTACTA
*
32266013 AAAAATATTAAAGAGTTACTA
1 AAAATTATTAAAGA-TTACTA
32266034 AAAATTATT
1 AAAATTATT
32266043 TAAATATTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
19 6 0.15
20 9 0.22
21 16 0.40
22 9 0.22
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (20 bp):
AAAATTATTAAAGATTACTA
Done.