Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 107 of 196
Found at i:32266053 original size:41 final size:39
Alignment explanation
Indices: 32265958--32266053 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 39
32265948 AAAAAGAGAA
* *
32265958 TATTGAAATATTAT-AAAATTATTAAAGATTACAAAAAT
1 TATTTAAATATTATAAAAAATATTAAAGATTACAAAAAT
* *
32265996 AATTTATAAAATTTATAAAAAATATTAAAGAGTTACTAAAAAT
1 TATTTA-AATA-TTATAAAAAATATTAAAGA-TTAC-AAAAAT
32266039 TATTTAAATATTATA
1 TATTTAAATATTATA
32266054 GAACTTCTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
38 4 0.09
39 3 0.06
40 4 0.09
41 18 0.38
42 7 0.15
43 11 0.23
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (39 bp):
TATTTAAATATTATAAAAAATATTAAAGATTACAAAAAT
Found at i:32266126 original size:19 final size:18
Alignment explanation
Indices: 32266102--32266154 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
32266092 AAAAAAATAG
32266102 TTATAAAATTATAGAAAAA
1 TTATAAAATTAT-GAAAAA
*
32266121 TTATAAAA--ATGAGAAA
1 TTATAAAATTATGAAAAA
32266137 TTATAGAAATTATGAAAA
1 TTATA-AAATTATGAAAA
32266155 TTCTACAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 10 0.34
17 5 0.17
19 14 0.48
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (18 bp):
TTATAAAATTATGAAAAA
Found at i:32270635 original size:12 final size:13
Alignment explanation
Indices: 32270618--32270646 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32270608 GTTTTGATTC
32270618 TTTAATTCTTT-A
1 TTTAATTCTTTAA
32270630 TTTAATTCTTTAA
1 TTTAATTCTTTAA
32270643 TTTA
1 TTTA
32270647 GTGGAAAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTAATTCTTTAA
Found at i:32282678 original size:20 final size:22
Alignment explanation
Indices: 32282655--32282695 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32282645 AATTAAGGAA
32282655 ATATA-TCAAAAA-TTTAAAAG
1 ATATATTCAAAAATTTTAAAAG
*
32282675 ATATATTTAAAAATTTTAAAA
1 ATATATTCAAAAATTTTAAAA
32282696 AATAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATATTCAAAAATTTTAAAAG
Found at i:32283372 original size:21 final size:21
Alignment explanation
Indices: 32283348--32283404 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
32283338 CTTGAATGTC
32283348 AAGTCTTGAAACTTGACCTAT
1 AAGTCTTGAAACTTGACCTAT
* *
32283369 AAGT-TTTAATACTTAACCTAT
1 AAGTCTTGAA-ACTTGACCTAT
* *
32283390 AAGTCTAGAGACTTG
1 AAGTCTTGAAACTTG
32283405 GCTTGTTTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 4 0.14
21 22 0.79
22 2 0.07
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (21 bp):
AAGTCTTGAAACTTGACCTAT
Found at i:32285954 original size:44 final size:44
Alignment explanation
Indices: 32285889--32286062 Score: 181
Period size: 44 Copynumber: 3.9 Consensus size: 44
32285879 TGAGTTCAGA
* *
32285889 AAATGAGAAATACCATGGTTGAAAGATA-TCATGGCATTATACCG
1 AAATGAGAAAGACCATAGTTGAAAGATACT-ATGGCATTATACCG
* *
32285933 AAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACCA
1 AAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACCG
* * * * * * *
32285977 AAATGGGTAAGACCTTAGTTAAAAGATACTACGACACTATACCGG
1 AAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC-G
*
32286022 AAAATGA-ACAAGACCATAGTTGAAAAGATACTATGACATTA
1 -AAATGAGA-AAGACCATAGTTG-AAAGATACTATGGCATTA
32286063 AATATGATTG
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
44 73 0.69
45 1 0.01
46 16 0.15
47 16 0.15
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.22
Consensus pattern (44 bp):
AAATGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACCG
Found at i:32291114 original size:59 final size:59
Alignment explanation
Indices: 32291042--32291160 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
32291032 ACATAATAGT
*
32291042 AAAATACTACAGAACATACAAGCATAATAGACATATTCATAACAGTAATATACCACATA
1 AAAATACTACAGAACATACAAGCATAACAGACATATTCATAACAGTAATATACCACATA
32291101 AAAATACTACAGAACATACAAGCATAACAGACATATTCATAACAGTAATATACCACATA
1 AAAATACTACAGAACATACAAGCATAACAGACATATTCATAACAGTAATATACCACATA
32291160 A
1 A
32291161 CTATTACATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.53, C:0.19, G:0.07, T:0.21
Consensus pattern (59 bp):
AAAATACTACAGAACATACAAGCATAACAGACATATTCATAACAGTAATATACCACATA
Found at i:32291160 original size:33 final size:31
Alignment explanation
Indices: 32291079--32291250 Score: 112
Period size: 33 Copynumber: 5.7 Consensus size: 31
32291069 TAGACATATT
*
32291079 CATAACAGTAATATACCACAT-A-AAA-ATA
1 CATAACAATAATATACCACATAACAAACATA
* * * *
32291107 C-T-AC-AGAACATACAAGCATAACAGACATA
1 CATAACAATAATATACCA-CATAACAAACATA
* *
32291136 TTCATAACAGTAATATACCACATAACTATTACATA
1 --CATAACAATAATATACCACATAAC-A-AACATA
* **
32291171 CATAACAACAATATACCATGTAACAAACATA
1 CATAACAATAATATACCACATAACAAACATA
*
32291202 CATAACAATAATAT---ACATAACATACATA
1 CATAACAATAATATACCACATAACAAACATA
* *
32291230 CATAACAACAATA-ACAACATA
1 CATAACAATAATATACCACATA
32291251 CATAACAGTA
Statistics
Matches: 110, Mismatches: 20, Indels: 26
0.71 0.13 0.17
Matches are distributed among these distances:
25 7 0.06
26 5 0.05
27 2 0.02
28 26 0.24
29 3 0.03
30 5 0.05
31 19 0.17
32 2 0.02
33 28 0.25
34 8 0.07
35 5 0.05
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.22
Consensus pattern (31 bp):
CATAACAATAATATACCACATAACAAACATA
Found at i:32291204 original size:31 final size:28
Alignment explanation
Indices: 32291166--32291242 Score: 109
Period size: 28 Copynumber: 2.6 Consensus size: 28
32291156 CATAACTATT
32291166 ACATACATAACAACAATATACCATGTAACAA
1 ACATACATAACAACAATATA-CA--TAACAA
* *
32291197 ACATACATAACAATAATATACATAACAT
1 ACATACATAACAACAATATACATAACAA
32291225 ACATACATAACAACAATA
1 ACATACATAACAACAATA
32291243 ACAACATACA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 22 0.51
30 2 0.05
31 19 0.44
ACGTcount: A:0.57, C:0.21, G:0.01, T:0.21
Consensus pattern (28 bp):
ACATACATAACAACAATATACATAACAA
Found at i:32291221 original size:9 final size:9
Alignment explanation
Indices: 32291196--32291275 Score: 62
Period size: 9 Copynumber: 8.8 Consensus size: 9
32291186 CCATGTAACA
32291196 AACATACAT
1 AACATACAT
32291205 AACAATA-AT
1 AAC-ATACAT
32291214 ATACATAACAT
1 A-ACAT-ACAT
32291225 -ACATACAT
1 AACATACAT
32291233 AACA-ACAAT
1 AACATAC-AT
32291242 AACA-ACAT
1 AACATACAT
32291250 -ACATAACAGT
1 AACAT-ACA-T
*
32291260 AATATACAT
1 AACATACAT
32291269 AACATAC
1 AACATAC
32291276 TTTGGTAAAG
Statistics
Matches: 59, Mismatches: 2, Indels: 20
0.73 0.02 0.25
Matches are distributed among these distances:
7 3 0.05
8 8 0.14
9 33 0.56
10 10 0.17
11 5 0.08
ACGTcount: A:0.57, C:0.20, G:0.01, T:0.21
Consensus pattern (9 bp):
AACATACAT
Found at i:32291243 original size:31 final size:30
Alignment explanation
Indices: 32291155--32291254 Score: 100
Period size: 28 Copynumber: 3.3 Consensus size: 30
32291145 GTAATATACC
32291155 ACATAACTATTACATACATAACAACAAT-ATA
1 ACATAAC-A-TACATACATAACAACAATAATA
* * *
32291186 CCATGTAACAAACATACATAACAATAAT-AT-
1 ACA--TAACATACATACATAACAACAATAATA
*
32291216 ACATAACATACATACATAACAACAATAACA
1 ACATAACATACATACATAACAACAATAATA
32291246 ACAT-ACATA
1 ACATAACATA
32291255 ACAGTAATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
28 21 0.36
29 6 0.10
30 6 0.10
31 20 0.34
32 1 0.02
33 4 0.07
ACGTcount: A:0.56, C:0.21, G:0.01, T:0.22
Consensus pattern (30 bp):
ACATAACATACATACATAACAACAATAATA
Found at i:32291263 original size:21 final size:22
Alignment explanation
Indices: 32291196--32291275 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 22
32291186 CCATGTAACA
*
32291196 AACATACATAACAATAATATAC-AT
1 AACATACAT-AC-ATAACA-ACAAT
32291220 AACATACATACATAACAACAAT
1 AACATACATACATAACAACAAT
**
32291242 AACA-ACATACATAACAGTAAT
1 AACATACATACATAACAACAAT
32291263 ATACATAACATAC
1 A-ACAT-ACATAC
32291276 TTTGGTAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
21 18 0.37
22 14 0.29
23 2 0.04
24 15 0.31
ACGTcount: A:0.57, C:0.20, G:0.01, T:0.21
Consensus pattern (22 bp):
AACATACATACATAACAACAAT
Found at i:32291408 original size:31 final size:29
Alignment explanation
Indices: 32291372--32291437 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 29
32291362 GAATGCCAAC
32291372 AAAAAAAAATTGAAGTAAGATATAATACGA
1 AAAAAAAAATTGAAGTAAGATATAATAC-A
* **
32291402 ATAAAAAAATTTGAAGTCTGATATAATACA
1 A-AAAAAAAATTGAAGTAAGATATAATACA
32291432 AAAAAA
1 AAAAAA
32291438 TACAAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 5 0.16
30 3 0.09
31 24 0.75
ACGTcount: A:0.62, C:0.05, G:0.11, T:0.23
Consensus pattern (29 bp):
AAAAAAAAATTGAAGTAAGATATAATACA
Found at i:32291563 original size:54 final size:57
Alignment explanation
Indices: 32291462--32291569 Score: 143
Period size: 55 Copynumber: 1.9 Consensus size: 57
32291452 AATATCAAAC
* *
32291462 TAGAAAAATTTGTTTTCCCAAACCCTAAACCAAAAAACTAAATGTTCC-AAAAAGAA
1 TAGAAAAATTTGTTTTCCCAAACCATAAACCAAAAAACCAAATGTTCCTAAAAAGAA
* *
32291518 TAGAAAAA-TTG-TTTCCCTAAACCATATACCAAAAAACCGAA-GTTCCTAAAAA
1 TAGAAAAATTTGTTTTCCC-AAACCATAAACCAAAAAACCAAATGTTCCTAAAAA
32291570 ATTGTCAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
54 11 0.24
55 27 0.59
56 8 0.17
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.23
Consensus pattern (57 bp):
TAGAAAAATTTGTTTTCCCAAACCATAAACCAAAAAACCAAATGTTCCTAAAAAGAA
Found at i:32305178 original size:28 final size:29
Alignment explanation
Indices: 32305138--32305204 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 29
32305128 AATTTAAAAC
* * *
32305138 GAGAAAGTTGAGAGAG-TTGAGAGGGTTT
1 GAGAGAGTTGAGAGAGTTTGAGAGAGTTG
32305166 GAGAGAGTTGAGAGAGTTTGAGAGAGTTG
1 GAGAGAGTTGAGAGAGTTTGAGAGAGTTG
32305195 GA-AGAGTTGA
1 GAGAGAGTTGA
32305205 AAGAAGGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 23 0.66
29 12 0.34
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.24
Consensus pattern (29 bp):
GAGAGAGTTGAGAGAGTTTGAGAGAGTTG
Found at i:32305202 original size:19 final size:19
Alignment explanation
Indices: 32305145--32305194 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
32305135 AACGAGAAAG
*
32305145 TTGAGAGAGTTGAGAGGGT
1 TTGAGAGAGTTGAGAGAGT
32305164 TTGAGAGAGTTGAGAGAGT
1 TTGAGAGAGTTGAGAGAGT
32305183 TTGAGAGAGTTG
1 TTGAGAGAGTTG
32305195 GAAGAGTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.44, T:0.28
Consensus pattern (19 bp):
TTGAGAGAGTTGAGAGAGT
Found at i:32305208 original size:9 final size:9
Alignment explanation
Indices: 32305138--32305204 Score: 82
Period size: 9 Copynumber: 7.2 Consensus size: 9
32305128 AATTTAAAAC
*
32305138 GAGAAAGTT
1 GAGAGAGTT
32305147 GAGAGAGTT
1 GAGAGAGTT
*
32305156 GAGAGGGTTT
1 GAGAGAG-TT
32305166 GAGAGAGTT
1 GAGAGAGTT
32305175 GAGAGAGTTT
1 GAGAGAG-TT
32305185 GAGAGAGTT
1 GAGAGAGTT
32305194 G-GAAGAGTT
1 GAG-AGAGTT
32305203 GA
1 GA
32305205 AAGAAGGATG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
8 1 0.02
9 33 0.65
10 17 0.33
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.24
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:32310960 original size:27 final size:26
Alignment explanation
Indices: 32310929--32311125 Score: 216
Period size: 27 Copynumber: 7.3 Consensus size: 26
32310919 TCATCTTCTA
**
32310929 GGGGTATAACAGTCATTTTACCCTAT
1 GGGGTATTTCAGTCATTTTACCCTAT
* *
32310955 GAGGGTATTTCGGTCATTTTACCCCAT
1 G-GGGTATTTCAGTCATTTTACCCTAT
* *
32310982 GGGGTATTTCACTCATTCTACCCTAT
1 GGGGTATTTCAGTCATTTTACCCTAT
*
32311008 GGGGGTATTCCAGTCATTTTACCCTAT
1 -GGGGTATTTCAGTCATTTTACCCTAT
32311035 GGGGATATTTCAGTCATTTTACCCTAT
1 GGGG-TATTTCAGTCATTTTACCCTAT
* * *
32311062 AGGGGTATTTCGGTTATTTTATCCTAT
1 -GGGGTATTTCAGTCATTTTACCCTAT
* *
32311089 GGGGGTATTTC-GCTCATTTTATCTTAT
1 -GGGGTATTTCAG-TCATTTTACCCTAT
32311116 GGGGGTATTT
1 -GGGGTATTT
32311126 TGGTTATTTT
Statistics
Matches: 148, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
26 27 0.18
27 117 0.79
28 4 0.03
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGGTATTTCAGTCATTTTACCCTAT
Found at i:32311067 original size:54 final size:53
Alignment explanation
Indices: 32310929--32311137 Score: 249
Period size: 54 Copynumber: 3.9 Consensus size: 53
32310919 TCATCTTCTA
** * *
32310929 GGGGTATAACAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCCAT
1 GGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT
* * * *
32310982 GGGGTATTTCACTCATTCTACCCTATGGGGGTATTCCAGTCATTTTACCCTAT
1 GGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT
* * *
32311035 GGGGATATTTCAGTCATTTTACCCTATAGGGGTATTTCGGTTATTTTATCCTAT
1 GGGG-TATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT
* * * *
32311089 GGGGGTATTTC-GCTCATTTTATCTTATGGGGGTATTTTGGTTATTTTAC
1 -GGGGTATTTCAG-TCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
32311138 TCATTTTAGG
Statistics
Matches: 133, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 50 0.38
54 79 0.59
55 4 0.03
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (53 bp):
GGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT
Found at i:32311135 original size:81 final size:80
Alignment explanation
Indices: 32310929--32311137 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 80
32310919 TCATCTTCTA
** *
32310929 GGGGTATAACAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCCATGGGGTATTTCAC
1 GGGGTATTCCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCCATGGGGTATTTCAC
32310994 TCATTCTACCCTATG
66 TCATTCTACCCTATG
* * * *
32311009 GGGGTATTCCAGTCATTTTACCCTATGGGGATATTTCAGTCATTTTACCCTATAGGGGTATTTCG
1 GGGGTATTCCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCCAT-GGGGTATTTCA
* * * *
32311074 GTTATTTTATCCTATG
65 CTCATTCTACCCTATG
* * * * *
32311090 GGGGTATTTC-GCTCATTTTATCTTATGGGGGTATTTTGGTTATTTTAC
1 GGGGTATTCCAG-TCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
32311138 TCATTTTAGG
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 48 0.44
81 61 0.56
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (80 bp):
GGGGTATTCCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCCATGGGGTATTTCAC
TCATTCTACCCTATG
Found at i:32318518 original size:12 final size:12
Alignment explanation
Indices: 32318501--32318534 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32318491 TTAGAGCAAT
32318501 TGCAAGAACAGA
1 TGCAAGAACAGA
**
32318513 TGCAAGCCCAGA
1 TGCAAGAACAGA
32318525 TGCAAGAACA
1 TGCAAGAACA
32318535 ACTAGAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.09
Consensus pattern (12 bp):
TGCAAGAACAGA
Found at i:32320760 original size:5 final size:5
Alignment explanation
Indices: 32320747--32320788 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
32320737 AGAATGTTCA
* *
32320747 AAAAA AAAAG AAAAG AAAA- AATA- AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
32320789 AGGAGAGGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
4 6 0.18
5 27 0.82
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:32320767 original size:18 final size:18
Alignment explanation
Indices: 32320746--32320789 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
32320736 AAGAATGTTC
32320746 AAAAAAAAAAGAAAAGAA
1 AAAAAAAAAAGAAAAGAA
*
32320764 AAAATAAAAAGAAAAGAA
1 AAAAAAAAAAGAAAAGAA
32320782 AAGAAAAA
1 AA-AAAAA
32320790 GGAGAGGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAGAA
Found at i:32320772 original size:23 final size:23
Alignment explanation
Indices: 32320746--32320789 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
32320736 AAGAATGTTC
32320746 AAAAAAAAAAGAAAAGAAAAAAT
1 AAAAAAAAAAGAAAAGAAAAAAT
*
32320769 AAAAAGAAAAGAAAAGAAAAA
1 AAAAAAAAAAGAAAAGAAAAA
32320790 GGAGAGGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.02
Consensus pattern (23 bp):
AAAAAAAAAAGAAAAGAAAAAAT
Found at i:32321255 original size:108 final size:108
Alignment explanation
Indices: 32321064--32321265 Score: 314
Period size: 108 Copynumber: 1.9 Consensus size: 108
32321054 TTCATCTTAT
* * * *
32321064 TATCTTAGCAAAATTTGGTATCTTGATTAATTTATTCATTTCGAGCTTTGCACTCAATAAAATTC
1 TATCTTAGCAAAATTTGCTATATTGATTAATTTATTCATTTCGAGCCTTACACTCAATAAAATTC
32321129 CATCTTATCCATTGTGATAATATTTTTCATCTTATTCAGTTCG
66 CATCTTATCCATTGTGATAATATTTTTCATCTTATTCAGTTCG
* **
32321172 TATCTTAGCAAAATTTGCTATATTGATTAATTTATTCATTTTGAGCCTTATTCTCAATAAAATTC
1 TATCTTAGCAAAATTTGCTATATTGATTAATTTATTCATTTCGAGCCTTACACTCAATAAAATTC
* * *
32321237 CATCTTGTCCATTTTGATAATCTTTTTCA
66 CATCTTATCCATTGTGATAATATTTTTCA
32321266 AGCATATTTC
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
108 84 1.00
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (108 bp):
TATCTTAGCAAAATTTGCTATATTGATTAATTTATTCATTTCGAGCCTTACACTCAATAAAATTC
CATCTTATCCATTGTGATAATATTTTTCATCTTATTCAGTTCG
Found at i:32321778 original size:24 final size:24
Alignment explanation
Indices: 32321733--32321787 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
32321723 ATGTCCCAAA
*
32321733 ATTACAGTGGACTTAACCTTGAAG
1 ATTACAGCGGACTTAACCTTGAAG
*
32321757 ATTACAGCGGA-TTGAACTTTGAAG
1 ATTACAGCGGACTT-AACCTTGAAG
32321781 ATTACAG
1 ATTACAG
32321788 TGGGGGCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (24 bp):
ATTACAGCGGACTTAACCTTGAAG
Found at i:32322470 original size:44 final size:44
Alignment explanation
Indices: 32322421--32322720 Score: 148
Period size: 44 Copynumber: 6.8 Consensus size: 44
32322411 AAGCACCAGC
* * *
32322421 CTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTGTAGAT
1 CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * * * * *
32322465 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAAT
1 CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * ** *****
32322509 CTTATCTTCCC--AAGA-TAGTAGGAAGCAGATTTAAGCCACCAG-T
1 CTTATC-TCCCTGAGGAGCAGT-GG-AGCAGATCGAAGATTGTAGAT
* * * * * *
32322552 CCTATCTCCCTGAGTAGCAGCGGAGTAGGTCAAAGATTGTAGAT
1 CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * * * * *
32322596 CTTGTCTTCCTGTACTG-GCAGTGAAGCAGATCGAAAGCA--CTAG-C
1 CTTATCTCCCTG-A-GGAGCAGTGGAGCAGATCG-AAG-ATTGTAGAT
* * * *
32322640 CTTATCTCCTTGAGGAGCAGTGGAGTAGGTTGAAGATTGTAGAT
1 CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGATTGTAGAT
* * *
32322684 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGAT
32322721 GGCGAATCTT
Statistics
Matches: 180, Mismatches: 61, Indels: 30
0.66 0.23 0.11
Matches are distributed among these distances:
41 1 0.01
42 12 0.07
43 36 0.20
44 106 0.59
45 21 0.12
46 3 0.02
47 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAGGAGCAGTGGAGCAGATCGAAGATTGTAGAT
Found at i:32322565 original size:219 final size:219
Alignment explanation
Indices: 32322116--32323088 Score: 1492
Period size: 219 Copynumber: 4.5 Consensus size: 219
32322106 CATCATATCA
** *
32322116 AGTCCTATCTCCCTGAGCAGCAATGGAGTAGGTCGAAGATTGCAGATCTTGTCTTCCTGTACTGG
1 AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
* * * *
32322181 CAGTGAAGTAGATTGAAAGCACCACCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTG
66 CAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
* * * * *
32322246 CAG-----ATCTCCCTAAGAAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCAAGAT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGAT
32322306 AGTAGGAAGCAGATTTAAGCCACC
196 AGTAGGAAGCAGATTTAAGCCACC
* *
32322330 AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCTAAGATTATAGATCTTGTCTTCCTGTACTGG
1 AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
*
32322395 CAGTGAAGCAGATCAAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
66 CAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
*
32322460 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCCAAGAT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGAT
32322525 AGTAGGAAGCAGATTTAAGCCACC
196 AGTAGGAAGCAGATTTAAGCCACC
* *
32322549 AGTCCTATCTCCCTGAGTAGCAGCGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTGTACTGG
1 AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
* *
32322614 CAGTGAAGCAGATCGAAAGCACTAGCCTTATCTCCTTGAGGAGCAGTGGAGTAGGTTGAAGATTG
66 CAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
*
32322679 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGAT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGAT
*
32322744 AGTAGGAAGTAGATTTAAGCCACC
196 AGTAGGAAGCAGATTTAAGCCACC
* * *
32322768 AGTCCTATCTCCTTGAGCAGTAGCGAAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
1 AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
* * * *
32322833 CAATGAAGCAGATCAAAAGCACCAGCCTTATCTCCCTGAAGAGCAGTGGAGTAGATTGAAGATTG
66 CAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
* * ** *
32322898 TAGATCTTATCTCCCGAGGCAGTAGTGGAGCAGATTAAAGATGGCGAATCTTATCTTCCCAAGGT
131 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGAT
* * **
32322963 AGTAGGGAAGTAGATTTAAGCGATT
196 AGTA-GGAAGCAGATTTAAGCCACC
* * * *
32322988 AG-CCTTATCTCCCTAAGCAGTAGTGGAGTAGGTCGATGATTGTAGATCTTGTCTTCCTGTACTG
1 AGTCC-TATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTG
*
32323052 GCAGTGAAGCAGATTGAAAGCACCAGCCTTATC-CCCT
65 GCAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCT
32323089 AAAGTTGCAG
Statistics
Matches: 699, Mismatches: 53, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
214 122 0.17
219 474 0.68
220 103 0.15
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (219 bp):
AGTCCTATCTCCCTGAGCAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTGTCTTCCTGTACTGG
CAGTGAAGCAGATCGAAAGCACCAGCCTTATCTCCCTGAGGAGCAGTGGAGTAGGTTGAAGATTG
TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGAT
AGTAGGAAGCAGATTTAAGCCACC
Found at i:32322925 original size:44 final size:43
Alignment explanation
Indices: 32322859--32323037 Score: 125
Period size: 44 Copynumber: 4.1 Consensus size: 43
32322849 AAGCACCAGC
*
32322859 CTTATCTCCCTGAAG-AGCAGTGGAGTAGATTGAAGATTGTAGAT
1 CTTATCTCCC-GAAGCAGTAGTGGAGTAGATTGAAGA-TGTAGAT
* * * **
32322903 CTTATCTCCCGAGGCAGTAGTGGAGCAGATTAAAGATGGCGAAT
1 CTTATCTCCCGAAGCAGTAGTGGAGTAGATTGAAGATGTAG-AT
* * *
32322947 CTTATCTTCCC-AAGGTAGTAG-GGAAGTAGATTTAAGCGAT-TAG-C
1 CTTATC-TCCCGAA-GCAGTAGTGG-AGTAGATTGAA--GATGTAGAT
* * * *
32322991 CTTATCTCCCTAAGCAGTAGTGGAGTAGGTCGATGATTGTAGAT
1 CTTATCTCCCGAAGCAGTAGTGGAGTAGATTGAAGA-TGTAGAT
32323035 CTT
1 CTT
32323038 GTCTTCCTGT
Statistics
Matches: 104, Mismatches: 19, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 26 0.25
44 52 0.50
45 19 0.18
46 1 0.01
47 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (43 bp):
CTTATCTCCCGAAGCAGTAGTGGAGTAGATTGAAGATGTAGAT
Found at i:32325370 original size:18 final size:18
Alignment explanation
Indices: 32325329--32325367 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32325319 TTATTTTATT
*
32325329 TTTATTTTTATAATTTTA
1 TTTATTTTCATAATTTTA
*
32325347 TTTATTTTCATTATTGTTA
1 TTTATTTTCATAATT-TTA
32325366 TT
1 TT
32325368 ATTGTCTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTATTTTCATAATTTTA
Found at i:32327351 original size:31 final size:30
Alignment explanation
Indices: 32327297--32327358 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
32327287 ATTTTAAAAA
* * *
32327297 TAAAAATAAAAAAGTATTTTAAAAATATAT
1 TAAAAATAAAAAAATATTATAAAAAAATAT
*
32327327 TAAAATTAAAAAAATATATATAAAAAAATAT
1 TAAAAATAAAAAAATAT-TATAAAAAAATAT
32327358 T
1 T
32327359 TATTATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (30 bp):
TAAAAATAAAAAAATATTATAAAAAAATAT
Found at i:32327885 original size:15 final size:16
Alignment explanation
Indices: 32327859--32327890 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
32327849 AATTTCTATA
32327859 TAATCAAGTTAAAATT
1 TAATCAAGTTAAAATT
32327875 TAATC-AGTTAAAATT
1 TAATCAAGTTAAAATT
32327890 T
1 T
32327891 GATATTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
TAATCAAGTTAAAATT
Found at i:32328361 original size:27 final size:27
Alignment explanation
Indices: 32328322--32328399 Score: 77
Period size: 29 Copynumber: 2.8 Consensus size: 27
32328312 TCATGTTAGC
*
32328322 AATTAATTAATTTTTTAAAATT-AAAA
1 AATTAATAAATTTTTTAAAATTCAAAA
*
32328348 AATTACATAAATTTTTTAGAAATTCAAAG
1 AATTA-ATAAATTTTTTA-AAATTCAAAA
* * *
32328377 AAGTATATATATATTTTAAAATT
1 AATTA-ATAAATTTTTTAAAATT
32328400 TAAATAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
26 5 0.12
27 11 0.26
28 10 0.23
29 17 0.40
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTAATAAATTTTTTAAAATTCAAAA
Found at i:32328418 original size:21 final size:21
Alignment explanation
Indices: 32328389--32328464 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 21
32328379 GTATATATAT
*
32328389 ATTTTAAAATTTAAATAAAAA
1 ATTTAAAAATTTAAATAAAAA
* *
32328410 ATTTCAAAATTCAGAA-AAAATA
1 ATTTAAAAATTTA-AATAAAA-A
*
32328432 ATTTAAAAGCATATAAATAAAAAA
1 ATTTAAAA--ATTTAAAT-AAAAA
*
32328456 ATATAAAAA
1 ATTTAAAAA
32328465 ATATTTTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
21 15 0.35
22 11 0.26
23 2 0.05
24 11 0.26
25 4 0.09
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (21 bp):
ATTTAAAAATTTAAATAAAAA
Found at i:32330746 original size:21 final size:21
Alignment explanation
Indices: 32330721--32330762 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32330711 ATCCGCCCTC
*
32330721 TCTTTTTTC-TCAATTTGTGTT
1 TCTTTTTCCTTCAATTT-TGTT
32330742 TCTTTTTCCTTCAATTTTGTT
1 TCTTTTTCCTTCAATTTTGTT
32330763 CAATTACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.10, C:0.17, G:0.07, T:0.67
Consensus pattern (21 bp):
TCTTTTTCCTTCAATTTTGTT
Found at i:32334780 original size:43 final size:41
Alignment explanation
Indices: 32334688--32334836 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 41
32334678 GTTACTCTGT
* * *
32334688 GGAATCAGCACTTAACAACCACC-TTATATTC-AGTGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTTACAATCAAG-GATACGG
*
32334729 GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCCCTTT-ACAATCAAGGATACGG
* ** *
32334771 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACC-CCTTTACAATCAAGGATACGG
*
32334814 GGAATCAACACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCCCT
32334837 CAAGGAATCT
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
40 2 0.02
41 23 0.25
42 30 0.32
43 33 0.35
44 5 0.05
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCTTTACAATCAAGGATACGG
Found at i:32334828 original size:42 final size:42
Alignment explanation
Indices: 32334688--32334833 Score: 170
Period size: 42 Copynumber: 3.5 Consensus size: 42
32334678 GTTACTCTGT
* * * *
32334688 GGAATCAGCACTTAACAACCACC-TTATATTCAGTGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
* *
32334729 GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAATGATACGG
* * *
32334771 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
*
32334814 GGAATCAACACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
32334834 CCTCAAGGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
40 2 0.02
41 20 0.22
42 31 0.35
43 31 0.35
44 5 0.06
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
Found at i:32334893 original size:67 final size:68
Alignment explanation
Indices: 32334772--32334903 Score: 187
Period size: 67 Copynumber: 2.0 Consensus size: 68
32334762 AGGATACGGT
32334772 GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAACACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAACACTTAGCAACCCCT
32334837 CAA
66 CAA
* * * * **
32334840 GGAATCTGCACTTAGCAACC-CCTTTTTG-ATCAGTGATTCGGGGAATCTGCACTTAGCAACCCC
1 GGAATCAGCACTTAGCAACCACC-TTTAGAATCAATAATTCGGGGAATCAACACTTAGCAACCCC
32334903 T
65 T
32334904 TACATCCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
67 34 0.60
68 23 0.40
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (68 bp):
GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAACACTTAGCAACCCCT
CAA
Found at i:32339420 original size:25 final size:25
Alignment explanation
Indices: 32339375--32339425 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
32339365 ACTTTTCTCA
* *
32339375 TCTCTTCAGTTCTCTCTCATTTTTC
1 TCTCTTCAGTTCCCTCTCATTATTC
*
32339400 TCTCTTCATTTCCCT-TCCATTATTC
1 TCTCTTCAGTTCCCTCT-CATTATTC
32339425 T
1 T
32339426 TCATTTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.10, C:0.33, G:0.02, T:0.55
Consensus pattern (25 bp):
TCTCTTCAGTTCCCTCTCATTATTC
Found at i:32341589 original size:30 final size:30
Alignment explanation
Indices: 32341551--32341716 Score: 126
Period size: 30 Copynumber: 5.5 Consensus size: 30
32341541 TTCAACTATC
32341551 AATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGTGATGACCATCA
* * * *
32341581 ACTTATGAAAAGGGATGGCT--TCGGCTAT-T
1 AATTATGAAAAGGGATGG-TGAT-GACCATCA
* * * * *
32341610 GATATCTGAAAAGGGATGGCT-TTGGCTATCA
1 AAT-TATGAAAAGGGATGG-TGATGACCATCA
*
32341641 AATTATGAAAAGGAATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGTGATGACCATCA
** * *
32341671 AAAAAT-AGAAAGGAATGGTGAAGACCATCA
1 AATTATGA-AAAGGGATGGTGATGACCATCA
32341701 AATTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
32341717 AGCTTCAGCT
Statistics
Matches: 108, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.04
30 99 0.92
31 5 0.05
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGATGACCATCA
Found at i:32341743 original size:60 final size:59
Alignment explanation
Indices: 32341526--32341746 Score: 173
Period size: 60 Copynumber: 3.7 Consensus size: 59
32341516 TCATCAACGA
* * *
32341526 ATGAAAATGGATAGCTTCAACTATC-AATTATGAAAAGGGATGGTGATGACCATCAACTT
1 ATGAAAAGGGATAGCTTCAGCTATCGAA-TATGAAAAGGGATGGTGATGACCATCAAATT
* * * * * * *
32341585 ATGAAAAGGGATGGCTTCGGCTATTGATATCTGAAAAGGGATGGCT-TTGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCAGCTATCGA-ATATGAAAAGGGATGG-TGATGACCATCAAATT
* * * * * * * *
32341645 ATGAAAAGGAAT-G-GTGATGACCATCAAAAAAT-AGAAAGGAATGGTGAAGACCATCAAATT
1 ATGAAAAGGGATAGCTTCA-G-CTATC-GAATATGA-AAAGGGATGGTGATGACCATCAAATT
32341705 ATGAAAAGGGATAGCTTCAGCTATCGAACTATGAAAAGGGAT
1 ATGAAAAGGGATAGCTTCAGCTATCGAA-TATGAAAAGGGAT
32341747 AACTTCGTTT
Statistics
Matches: 119, Mismatches: 31, Indels: 23
0.69 0.18 0.13
Matches are distributed among these distances:
58 1 0.01
59 26 0.22
60 84 0.71
61 6 0.05
62 2 0.02
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCAGCTATCGAATATGAAAAGGGATGGTGATGACCATCAAATT
Found at i:32341771 original size:30 final size:30
Alignment explanation
Indices: 32341701--32341773 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
32341691 AAGACCATCA
*
32341701 AATTATGAAAAGGGATAGCTTCAGCTATCG
1 AATTATGAAAAGGGATAACTTCAGCTATCG
* *
32341731 AACTATGAAAAGGGATAACTTC-GTTTATCG
1 AATTATGAAAAGGGATAACTTCAG-CTATCG
*
32341761 AATTACGAAAAGG
1 AATTATGAAAAGG
32341774 AATATGTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.03
30 36 0.97
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (30 bp):
AATTATGAAAAGGGATAACTTCAGCTATCG
Found at i:32341772 original size:120 final size:120
Alignment explanation
Indices: 32341559--32341776 Score: 294
Period size: 120 Copynumber: 1.8 Consensus size: 120
32341549 TCAATTATGA
* * * * * * *
32341559 AAAGGGATGGTGATGACCATCAACTTATGAAAAGGGATGGCTTCGGCTATTGATATCTGAAAAGG
1 AAAGGAATGGTGAAGACCATCAAATTATGAAAAGGGATAGCTTCAGCTATCGATATATGAAAAGG
** * *
32341624 GATGGCTTTGGCTATCAAATTATGAAAAGGAATGGTGATGACCATCAAAAAATAG
66 GATAACTTCGGCTATCAAATTACGAAAAGGAATGGTGATGACCATCAAAAAATAG
32341679 AAAGGAATGGTGAAGACCATCAAATTATGAAAAGGGATAGCTTCAGCTATCGA-ACTATGAAAAG
1 AAAGGAATGGTGAAGACCATCAAATTATGAAAAGGGATAGCTTCAGCTATCGATA-TATGAAAAG
** *
32341743 GGATAACTTCGTTTATCGAATTACGAAAAGGAAT
65 GGATAACTTCGGCTATCAAATTACGAAAAGGAAT
32341777 ATGTCAACCA
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
119 1 0.01
120 82 0.99
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (120 bp):
AAAGGAATGGTGAAGACCATCAAATTATGAAAAGGGATAGCTTCAGCTATCGATATATGAAAAGG
GATAACTTCGGCTATCAAATTACGAAAAGGAATGGTGATGACCATCAAAAAATAG
Found at i:32353739 original size:43 final size:43
Alignment explanation
Indices: 32353692--32353775 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
32353682 TATGTGATTT
32353692 ATATTGAAATGGAAAAA-ATGAAAAATGAATATGAGATGAGAAA
1 ATATTGAAAT-GAAAAATATGAAAAATGAATATGAGATGAGAAA
* *
32353735 ATATTGAAATGAAAAATATGATAAATGATTATGAGATGAGA
1 ATATTGAAATGAAAAATATGAAAAATGAATATGAGATGAGA
32353776 TATGAGATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 6 0.16
43 32 0.84
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (43 bp):
ATATTGAAATGAAAAATATGAAAAATGAATATGAGATGAGAAA
Found at i:32353750 original size:15 final size:16
Alignment explanation
Indices: 32353707--32353762 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
32353697 GAAATGGAAA
32353707 AAATGAAAAATGAATATG
1 AAATGAAAAAT--ATATG
*
32353725 AGATGAGAAAATAT-TG
1 AAATGA-AAAATATATG
32353741 AAATGAAAAATATGAT-
1 AAATGAAAAATAT-ATG
32353757 AAATGA
1 AAATGA
32353763 TTATGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 3 0.09
18 5 0.15
19 5 0.15
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (16 bp):
AAATGAAAAATATATG
Found at i:32357833 original size:54 final size:54
Alignment explanation
Indices: 32357763--32357921 Score: 147
Period size: 54 Copynumber: 3.1 Consensus size: 54
32357753 TATTATAAAG
* *
32357763 AATTTTATGAAATCATATATTATTATTAAATTATATTTAATAATAATTATTTTA
1 AATTGTATCAAATCATATATTATTATTAAATTATATTTAATAATAATTATTTTA
* *
32357817 AATTGTA-CAAATTCATATA--A-GA--AAATT-TA-TTAGTAATAATTATTTTA
1 AATTGTATCAAA-TCATATATTATTATTAAATTATATTTAATAATAATTATTTTA
* * * * * *
32357864 AATTTTATTAAAGCATATATT-TTAATTAAAATATATTTAATAATTATTATTTCA
1 AATTGTATCAAATCATATATTATT-ATTAAATTATATTTAATAATAATTATTTTA
32357918 AATT
1 AATT
32357922 ATATTTTATA
Statistics
Matches: 83, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
47 29 0.35
48 5 0.06
49 5 0.06
50 1 0.01
51 1 0.01
52 5 0.06
53 5 0.06
54 32 0.39
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (54 bp):
AATTGTATCAAATCATATATTATTATTAAATTATATTTAATAATAATTATTTTA
Found at i:32357930 original size:59 final size:58
Alignment explanation
Indices: 32357865--32358279 Score: 212
Period size: 59 Copynumber: 6.9 Consensus size: 58
32357855 ATTATTTTAA
*
32357865 ATTTTATTAAAGCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTAT
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTT-AAATTAT
* * * * * * *
32357924 ATTTTA-TAGTATCATATACTATGATTTTAGTAAAT-TCATATAAGAA-TATTGA-TT-AATAAG
1 ATTTTATTA-AATCATATA-TTTTA-ATTA--AAATAT-ATTTAATAATTATT-ATTTAAATTA-
*
32357984 A
58 T
32357985 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTAT
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTT-AAATTAT
* * * * * * *
32358044 ATTTTA-TAGTATCATATATTATGATTTTAGTAAAT-TCATATAAGAA-TATTGATTATTAA-GA
1 ATTTTATTA-AATCATATATT-TTA-ATTA--AAATAT-ATTTAATAATTATT-ATT-TAAATTA
32358105 -
58 T
* * *
32358105 ATTTTATTAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAATTAT
* * * * * * *
32358164 ATTTTA-TAGTATCATATATTATGATTTTAGTAAAT-TCATATAAGAA-TATTGATTATTAA-GA
1 ATTTTATTA-AATCATATATT-TTA-ATTA--AAATAT-ATTTAATAATTATT-ATT-TAAATTA
32358225 -
58 T
* * *
32358225 ATTTTATTAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAA
32358280 ATATGATTAA
Statistics
Matches: 263, Mismatches: 53, Indels: 82
0.66 0.13 0.21
Matches are distributed among these distances:
57 44 0.17
58 24 0.09
59 52 0.20
60 22 0.08
61 51 0.19
62 25 0.10
63 44 0.17
64 1 0.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (58 bp):
ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTAAATTAT
Found at i:32358279 original size:120 final size:120
Alignment explanation
Indices: 32357864--32358273 Score: 723
Period size: 120 Copynumber: 3.4 Consensus size: 120
32357854 AATTATTTTA
* *
32357864 AATTTTATTAAAGCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
* *
32357929 ATAGTATCATATACTATGATTTTAGTAAATTCATATAAGAATATTGATTAATAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
32357984 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
32358049 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
* *
32358104 AATTTTATTAATTTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
32358168 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
* *
32358224 AATTTTATTAATTTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
32358274 GTTAAAATAT
Statistics
Matches: 283, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 281 0.99
121 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:32358508 original size:45 final size:44
Alignment explanation
Indices: 32358417--32358513 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 44
32358407 CTATTACACC
*
32358417 TCCATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
*
32358461 TCCATTACATTCAACCAAA-A-AATTGAATTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACAA--GAA-TACTATTACGCCTCTAT
32358506 TCCATTAC
1 TCCATTAC
32358514 GTCTCTATTC
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 2 0.04
43 1 0.02
44 21 0.44
45 24 0.50
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
Found at i:32358514 original size:16 final size:16
Alignment explanation
Indices: 32358493--32358557 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
32358483 TTGAATTGCT
32358493 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
32358509 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
32358525 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
32358541 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
32358557 A
1 A
32358558 ATACAGCGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.20, C:0.35, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:32365608 original size:18 final size:18
Alignment explanation
Indices: 32365585--32365620 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32365575 TACGGTGTGC
*
32365585 GAAACTATTTTTATGCTT
1 GAAACTATTTTGATGCTT
32365603 GAAACTATTTTGATGCTT
1 GAAACTATTTTGATGCTT
32365621 CCTATTCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (18 bp):
GAAACTATTTTGATGCTT
Found at i:32368993 original size:40 final size:40
Alignment explanation
Indices: 32368895--32369064 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 40
32368885 TCCTCGTTCA
* * * *
32368895 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
32368934 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
32368974 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * *
32369014 AATGCCTTCGGGACTTAACCCGGA-TTAAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAA-TAACTCGCACG
*
32369054 AAGGCCTTCGG
1 AATGCCTTCGG
32369065 ATCTTAATCC
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 38 0.32
40 79 0.68
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:32369037 original size:80 final size:79
Alignment explanation
Indices: 32368893--32369117 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 79
32368883 GCTCCTCGTT
* * * * * *
32368893 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
32368958 TTTAA-CAACTCGCA
66 -TTAAGCAACTCGCA
* *
32368972 CGACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
* *
32369037 ATTAAGTATCTCGCA
65 ATTAAGCAACTCGCA
* * * * * * * *
32369052 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCG
32369116 GA
64 GA
32369118 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 41 0.34
80 76 0.62
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTAAGCAACTCGCA
Found at i:32369071 original size:40 final size:39
Alignment explanation
Indices: 32368893--32369117 Score: 186
Period size: 40 Copynumber: 5.7 Consensus size: 39
32368883 GCTCCTCGTT
* * * * * *
32368893 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGGGACTTAACCCGG-ATTAATAACTCGCA
* * *
32368933 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCA
* **
32368972 CGACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCA
* * *
32369012 CGAATGCCTTCGGGACTTAACCCGGATTAAGTATCTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTAA-TAACTCGCA
* * * *
32369052 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAAGGCCTTCGGGA-CTTAACCCGGAT-TAATAAC-TCGCA
*
32369093 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGA
32369118 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 40 0.25
40 106 0.67
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTAATAACTCGCA
Found at i:32374392 original size:30 final size:30
Alignment explanation
Indices: 32374356--32374417 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
32374346 AATCCCTAAT
32374356 TCCCCAAATTCTCTCAAATCTTTCAAAACC
1 TCCCCAAATTCTCTCAAATCTTTCAAAACC
32374386 TCCCCAAATTCTCTCAAATCTTTCAAAACC
1 TCCCCAAATTCTCTCAAATCTTTCAAAACC
32374416 TC
1 TC
32374418 TTAAACCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.31
Consensus pattern (30 bp):
TCCCCAAATTCTCTCAAATCTTTCAAAACC
Found at i:32379981 original size:19 final size:20
Alignment explanation
Indices: 32379943--32379987 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
32379933 AAGGATCAAA
32379943 TTGGAACAAAATAGAAAATT
1 TTGGAACAAAATAGAAAATT
**
32379963 TTGGAACAACTTA-AAAATT
1 TTGGAACAAAATAGAAAATT
32379982 TTGGAA
1 TTGGAA
32379988 GTAGGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.29
Consensus pattern (20 bp):
TTGGAACAAAATAGAAAATT
Found at i:32389150 original size:15 final size:15
Alignment explanation
Indices: 32389130--32389158 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32389120 GTAATCAGAT
32389130 ATCTTTGTTCAAACC
1 ATCTTTGTTCAAACC
32389145 ATCTTTGTTCAAAC
1 ATCTTTGTTCAAAC
32389159 TGGGTACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (15 bp):
ATCTTTGTTCAAACC
Found at i:32395598 original size:39 final size:39
Alignment explanation
Indices: 32395540--32395677 Score: 224
Period size: 39 Copynumber: 3.5 Consensus size: 39
32395530 AACATGTTTT
* *
32395540 TGAGTATTGTGATAGATGCTTGAATGTTATGTGATTAAA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
32395579 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
32395618 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
32395657 T-ATGTAATGTGATATATGCTT
1 TGA-GTATTGTGATATATGCTT
32395678 AAAAGTGCAT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 93 0.99
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:32395611 original size:22 final size:22
Alignment explanation
Indices: 32395586--32395657 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
32395576 AAATGAGTAT
32395586 TGTGATATATGCTTGAATGTTA
1 TGTGATATATGCTTGAATGTTA
*
32395608 TGTGAT-TAT--ATG-A-G-TA
1 TGTGATATATGCTTGAATGTTA
*
32395624 TTGTGATATATGCTTAAATGTTA
1 -TGTGATATATGCTTGAATGTTA
32395647 TGTGATTATAT
1 TGTGA-TATAT
32395658 ATGTAATGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 15
0.68 0.05 0.26
Matches are distributed among these distances:
16 2 0.05
17 7 0.18
18 4 0.10
19 2 0.05
20 1 0.03
21 4 0.10
22 12 0.31
23 7 0.18
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (22 bp):
TGTGATATATGCTTGAATGTTA
Found at i:32395678 original size:39 final size:39
Alignment explanation
Indices: 32395540--32395694 Score: 222
Period size: 39 Copynumber: 3.9 Consensus size: 39
32395530 AACATGTTTT
* * *
32395540 TGAGTATTGTGATAGATGCTTGAATGTTATGTGATTAAA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
32395579 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
32395618 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
32395657 T-ATGTAATGTGATATATGCTTAAAAGTGCATGTGATTA
1 TGA-GTATTGTGATATATGCTTAAATGT-TATGTGATTA
32395695 CCATGTAAAT
Statistics
Matches: 108, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 98 0.91
40 9 0.08
ACGTcount: A:0.31, C:0.03, G:0.23, T:0.43
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:32398604 original size:20 final size:20
Alignment explanation
Indices: 32398576--32398643 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
32398566 CTTACGTGCT
*
32398576 CCTATTTGTACTTCGATACC
1 CCTAATTGTACTTCGATACC
* *
32398596 CCTGATTGTACTTGCG-TGCC
1 CCTAATTGTACTT-CGATACC
*
32398616 CCTAATTGTACTTCAATACC
1 CCTAATTGTACTTCGATACC
*
32398636 CCTTATTG
1 CCTAATTG
32398644 CAGTTACGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 1 0.03
20 36 0.92
21 2 0.05
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.38
Consensus pattern (20 bp):
CCTAATTGTACTTCGATACC
Found at i:32398614 original size:40 final size:40
Alignment explanation
Indices: 32398558--32398686 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 40
32398548 AATTATACCA
* *
32398558 TGATTGCACTTACGTGCTCCTATTTGTACTTCGATACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCAATACCCC
* * *
32398598 TGATTGTACTTGCGTGCCCCTAATTGTACTTCAATACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCAATACCCC
* * * * *
32398638 TTATTGCAGTTACGTGCCCCTGTTTGTACTTCAGTACCCT
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCAATACCCC
*
32398678 TGAATGCAC
1 TGATTGCAC
32398687 ATCGGTGCCC
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTTCAATACCCC
Found at i:32398714 original size:20 final size:20
Alignment explanation
Indices: 32398651--32398716 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
32398641 TTGCAGTTAC
* *
32398651 GTGCCCCTGTTTGTACTTCA
1 GTGCCCATGTTTGCACTTCA
* * ** * *
32398671 GTACCCTTGAATGCACATCG
1 GTGCCCATGTTTGCACTTCA
32398691 GTGCCCATGTTTGCACTTCA
1 GTGCCCATGTTTGCACTTCA
32398711 GTGCCC
1 GTGCCC
32398717 CTAGTTGCAC
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.32, G:0.21, T:0.32
Consensus pattern (20 bp):
GTGCCCATGTTTGCACTTCA
Found at i:32403764 original size:18 final size:18
Alignment explanation
Indices: 32403738--32403778 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
32403728 TTTGAAGCAT
32403738 GATGCTGGTTTTGATGAA
1 GATGCTGGTTTTGATGAA
*
32403756 GATGTTGGTTTTGATGAA
1 GATGCTGGTTTTGATGAA
32403774 GATGC
1 GATGC
32403779 AATCTTAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.22, C:0.05, G:0.34, T:0.39
Consensus pattern (18 bp):
GATGCTGGTTTTGATGAA
Found at i:32411273 original size:18 final size:18
Alignment explanation
Indices: 32411250--32411287 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32411240 AATTTGAAAT
32411250 AAAACAAAAAATTTTGGA
1 AAAACAAAAAATTTTGGA
**
32411268 AAAACATGAAATTTTGGA
1 AAAACAAAAAATTTTGGA
32411286 AA
1 AA
32411288 CAGAGGTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (18 bp):
AAAACAAAAAATTTTGGA
Found at i:32413927 original size:41 final size:41
Alignment explanation
Indices: 32413867--32413944 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
32413857 CTCACTTATC
32413867 GAAATCATGGTCCCAAAACCATTATTTCTGACACCACCGAA
1 GAAATCATGGTCCCAAAACCATTATTTCTGACACCACCGAA
* *
32413908 GAAATCATGGTCCCGAAACCATTATTTCTGGCACCAC
1 GAAATCATGGTCCCAAAACCATTATTTCTGACACCAC
32413945 TGAAAATGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.23
Consensus pattern (41 bp):
GAAATCATGGTCCCAAAACCATTATTTCTGACACCACCGAA
Found at i:32418800 original size:20 final size:19
Alignment explanation
Indices: 32418776--32418823 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
32418766 TTTTTAACCC
* *
32418776 AAATTAATTATTTTCTCTA
1 AAATTAATTAATTACTCTA
* *
32418795 ATAATTATTTAATTACTTTA
1 A-AATTAATTAATTACTCTA
32418815 AAATTAATT
1 AAATTAATT
32418824 TTCCCAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (19 bp):
AAATTAATTAATTACTCTA
Found at i:32419649 original size:37 final size:37
Alignment explanation
Indices: 32419599--32419673 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
32419589 AGAGTATGAG
* *
32419599 TACAGTGGACGACATCCCTTAGTATTCCTGCTAGGGT
1 TACAGTGGACGACACCCCTTAGTATTCCTCCTAGGGT
32419636 TACAGTGGACGACACCCCTTAGTATTCCTCCTAGGGT
1 TACAGTGGACGACACCCCTTAGTATTCCTCCTAGGGT
32419673 T
1 T
32419674 GTTGCCCCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (37 bp):
TACAGTGGACGACACCCCTTAGTATTCCTCCTAGGGT
Found at i:32420065 original size:12 final size:12
Alignment explanation
Indices: 32420042--32420077 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
32420032 GCAAATATAT
32420042 CATTTCTCATTTC
1 CATTT-TCATTTC
32420055 CATTTTCATTTC
1 CATTTTCATTTC
*
32420067 CATTTCCATTT
1 CATTTTCATTT
32420078 TGAGAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:32420072 original size:18 final size:19
Alignment explanation
Indices: 32420041--32420078 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
32420031 TGCAAATATA
32420041 TCATTTCTCATTTCCATTT
1 TCATTTCTCATTTCCATTT
32420060 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
32420078 T
1 T
32420079 GAGAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:32427195 original size:40 final size:40
Alignment explanation
Indices: 32427150--32427436 Score: 346
Period size: 40 Copynumber: 7.2 Consensus size: 40
32427140 CGGAATTTGG
* *
32427150 CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
32427190 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
32427230 CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
32427270 CCGG-TAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
32427309 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
32427349 CCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
32427389 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32427429 CCGGATAT
1 CCGGATAT
32427437 CATTCAAATG
Statistics
Matches: 204, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.16
40 165 0.81
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32427391 original size:80 final size:80
Alignment explanation
Indices: 32427150--32427436 Score: 468
Period size: 80 Copynumber: 3.6 Consensus size: 80
32427140 CGGAATTTGG
* * * * * * *
32427150 CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
32427215 CCTTCGGATCTTAGT
66 CCTTCGGGTCTTAGC
* *
32427230 CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
32427294 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
32427309 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
32427374 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
32427389 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
32427437 CATTCAAATG
Statistics
Matches: 195, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 73 0.37
80 122 0.63
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
CCTTCGGGTCTTAGC
Found at i:32435382 original size:79 final size:82
Alignment explanation
Indices: 32435271--32435455 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32435261 GCTACTCGTT
* * *
32435271 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32435334 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
32435351 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32435414 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32435431 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32435456 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32435455 original size:40 final size:40
Alignment explanation
Indices: 32435252--32435455 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
32435242 CGGAATTTAA
** *
32435252 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
32435292 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32435332 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32435371 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32435411 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32435451 CCGGA
1 CCGGA
32435456 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32437395 original size:10 final size:10
Alignment explanation
Indices: 32437382--32437408 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
32437372 GAAAAACCAT
32437382 AAAAAAAGAA
1 AAAAAAAGAA
32437392 AAAAAAAGAA
1 AAAAAAAGAA
32437402 AAAAAAA
1 AAAAAAA
32437409 ACAACAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:32437396 original size:11 final size:11
Alignment explanation
Indices: 32437382--32437419 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32437372 GAAAAACCAT
32437382 AAAAAAAG-AA
1 AAAAAAAGAAA
32437392 AAAAAAAGAAA
1 AAAAAAAGAAA
*
32437403 AAAAAAACAACA
1 AAAAAAAGAA-A
32437415 AAAAA
1 AAAAA
32437420 CCAGCAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 8 0.32
11 11 0.44
12 6 0.24
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:32449367 original size:6 final size:6
Alignment explanation
Indices: 32449345--32449397 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
32449335 GAAAGTATAA
* * *
32449345 AAAAAT AATAAT AAAAAAT AAAAGT AACAAGAA AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT -AAAAAT AAAAAT AA-AA-AT AAAAAT AAAAAT AAAAAT
32449396 AA
1 AA
32449398 CTATAAAAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 27 0.71
7 9 0.24
8 2 0.05
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:32449405 original size:12 final size:12
Alignment explanation
Indices: 32449345--32449397 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
32449335 GAAAGTATAA
*
32449345 AAAAATAATAAT
1 AAAAATAAAAAT
*
32449357 AAAAAATAAAAGT
1 -AAAAATAAAAAT
*
32449370 AACAAGAAAAAAAT
1 AA-AA-ATAAAAAT
32449384 AAAAATAAAAAT
1 AAAAATAAAAAT
32449396 AA
1 AA
32449398 CTATAAAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 11 0.33
13 14 0.42
14 8 0.24
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:32451208 original size:4 final size:4
Alignment explanation
Indices: 32451201--32451239 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
32451191 ACAAAACAGT
*
32451201 TTTA TTTA -ATA TTCTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTT
32451240 CAATTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 2 0.06
4 25 0.81
5 4 0.13
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:32452777 original size:15 final size:15
Alignment explanation
Indices: 32452757--32452793 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
32452747 GTCGCCCTTT
*
32452757 TTATTTTTTATTTTA
1 TTATTTTTTATATTA
32452772 TTATTTTTTATATTA
1 TTATTTTTTATATTA
32452787 TGTATTT
1 T-TATTT
32452794 AATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTTTTATATTA
Found at i:32453921 original size:44 final size:44
Alignment explanation
Indices: 32453629--32454706 Score: 539
Period size: 44 Copynumber: 23.9 Consensus size: 44
32453619 GATTCATCGT
* * ** *
32453629 TTTAAT-TCGCTCCACTGCAACTTCAAGGAGATAGGATTAATAGC
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
32453673 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * **
32453717 TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
32453761 TTTAATATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-G--TATC
* * *
32453810 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTATC
* * * * *
32453856 TTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTC
1 TTTAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
32453900 TTTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--TATC
* * * *
32453946 TTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGGTTTG-A--
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * *
32453987 TATGATTTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--C
* * * **
32454038 TTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCACTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATC
* * * * * * *
32454083 TTCAGTCTGTTCCATTGCAGCTTCAGGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * *
32454127 TTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * * *
32454168 TATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T----TGTAT--C
* * * * * * *
32454219 TTCAATATGTTCCACTGCAACTTCAAGAAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
** * * * * * * *
32454264 TCCAGTCTGTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
32454308 TTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * ** *
32454349 TATGATTTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T----TGTAT--C
* ** * * * *
32454400 TTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * * * *
32454445 TTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTGTAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
32454489 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * *
32454530 TATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T--TGTAT--C
* ** * * * *
32454581 TTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * * * * **
32454626 TTCAGTCTGCTCCACT-TAACTTCAGAGAGATAAGACTAGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
32454669 TTCAATCTGCTCCACTGCAACTTCAGGGGGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
32454707 CGCCATGATG
Statistics
Matches: 774, Mismatches: 204, Indels: 112
0.71 0.19 0.10
Matches are distributed among these distances:
41 115 0.15
42 2 0.00
43 19 0.02
44 282 0.36
45 115 0.15
46 75 0.10
47 14 0.02
48 3 0.00
49 38 0.05
50 2 0.00
51 109 0.14
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
Found at i:32453923 original size:139 final size:134
Alignment explanation
Indices: 32453640--32454166 Score: 474
Period size: 137 Copynumber: 3.9 Consensus size: 134
32453630 TTAATTCGCT
* * ** *
32453640 CCACTGCAACTTCAAGGAGATAGGA-TT-AATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
32453703 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
*
32453768 TGCT
131 TGCC
*
32453772 CCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGG
1 CCACTGCAACTTCAGGGAGATAAGATTTGT---CTATCTTCAATCTGCTCCACTGCAACTTCAGG
* * * * * * *
32453837 GAGATAAGATTGGTTTATTTTTAACTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTT
63 GAGATAAGATTGG--TATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTT
*
32453902 TAATCTGCC
126 TAATATGCC
* * * * * *
32453911 CCACTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * ** * * * * *
32453976 ATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTAATTTATAGC
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG----G---TTTGTGGC
* **
32454038 TTTAATCTGTT
124 TTTAATATGCC
* * ** * * * *
32454049 CCACTGCAACTTTAGGGAAATAAGA-TTCACTATCTTCAGTCTGTTCCATTGCAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * *
32454113 ATAAGACTT-GTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGGTTTG
66 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG
32454167 CTATGATCTG
Statistics
Matches: 319, Mismatches: 58, Indels: 35
0.77 0.14 0.08
Matches are distributed among these distances:
131 24 0.08
132 23 0.07
133 7 0.02
135 1 0.00
136 38 0.12
137 80 0.25
138 40 0.13
139 80 0.25
140 26 0.08
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (134 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
TGCC
Found at i:32453932 original size:90 final size:89
Alignment explanation
Indices: 32453683--32454660 Score: 392
Period size: 92 Copynumber: 10.8 Consensus size: 89
32453673 TTCAATCTGC
* * *
32453683 TCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * *** *
32453748 TAAGGTT-TGTGGCTTTAA-TATGC
66 TAAGATTGTTTATTTTTAACT-TGT
*
32453771 TCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGT-G----TCTTCAATCTGCTCCACTGCAACTTCAG
32453836 GGAGATAAGATTGGTTTATTTTTAACTTGT
61 GGAGATAAGATT-GTTTATTTTTAACTTGT
* * * * *
32453866 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
32453931 TAAGATTTGTTTATTTTTAACCTGT
66 TAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * * *
32453956 TCCACTGCAGCTTCAGGGAGATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
32454018 TAAGATTTGTAATTTATAGCTTTAA-TCTGT
66 TAAGA-TTG---TTTAT--TTTTAACT-TGT
* * ** * * * * *
32454048 TCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCATTGCAGCTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATT-TGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
32454113 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * *
32454137 TCCACTGCAACTTCTGAGAGATAAG-GTT-TG-CTAT-GATCTGTTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* *
32454198 ATAAGATCTGAAATTTATAGCTTCAA-TATGT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * * * * * * *
32454229 TCCACTGCAACTTCAAGAAAATAAGATTCGCTATCTCCAGTCTGTTCTACTGCAGCTTCAAGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
32454294 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * **
32454318 TCCATTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATTTGCTCTACTGCAACTTCAAAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * *
32454379 ATAAGATCTGCAATTTATAGCTTCAA-TCTAT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * * * *
32454410 TCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTTAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * **
32454475 ATAAGACTTG--TAGCTTCAACCTAC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * *
32454499 TCCACTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATCTGCTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * *
32454560 ATAAGATCTGTAATTTATAGCTTCAA-TCTAT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * * * *
32454591 TCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACT-TAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
32454655 ATAAGA
65 ATAAGA
32454661 CTAGTGGCTT
Statistics
Matches: 676, Mismatches: 145, Indels: 131
0.71 0.15 0.14
Matches are distributed among these distances:
84 3 0.00
85 91 0.13
86 5 0.01
87 31 0.05
88 33 0.05
89 88 0.13
90 90 0.13
91 8 0.01
92 119 0.18
93 41 0.06
94 3 0.00
95 62 0.09
96 100 0.15
97 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTGTTTATTTTTAACTTGT
Found at i:32454066 original size:92 final size:89
Alignment explanation
Indices: 32453814--32454660 Score: 533
Period size: 92 Copynumber: 9.4 Consensus size: 89
32453804 CCTATCTTCA
* * * * * * *
32453814 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTAT--TTTTAACTTGTTCCAGTGCAAC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCAAC
** * *
32453877 TTCAGGGGGATAAGGTTTGTGTCTTTA
66 TTCAGGGAAATAAGG-TT-TG-CTATG
* * * * * *
32453904 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTAT--TTTTAACCTGTTCCACTGCAGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCAAC
* *
32453967 TTCAGGGAGATAAGGTTTGATATG
66 TTCAGGGAAATAAGGTTTGCTATG
* * * *
32453991 ATTTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG---TTTATAGCTTCAACCTGTTCCACTGC
* * ** *
32454056 AACTTTAGGGAAATAAGATTCACTATCTTC
63 AACTTCAGGGAAATAAGGTTTGCTA---TG
* * * * * * *
32454086 AGTCTGTTCCATTGCAGCTTCAGGGAGATAAGACTTG--TA-A-CTTCAACCTGCTCCACTGCAA
1 A-TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCAA
* * *
32454147 CTTCTGAGAGATAAGGTTTGCTATG
65 CTTCAGGGAAATAAGGTTTGCTATG
* * * **
32454172 ATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG---TTTATAGCTTCAACCTGTTCCACTGC
* * * * *
32454237 AACTTCAAGAAAATAAGATTCGCTATCTCC
63 AACTTCAGGGAAATAAGGTTTGCTA--T-G
* * * * *
32454267 AGTCTGTTCTACTGCAGCTTCA-AGGAGATAAGACTTG--TA-A-CTTCAACCTGCTCCATTGCA
1 A-TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCA
*
32454327 ACTTCAGGGAGATAAGGTTTGCTATG
64 ACTTCAGGGAAATAAGGTTTGCTATG
* * * * * * *
32454353 ATTTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCAATTTATAGCTTCAATCTATTCCAATAC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG---TTTATAGCTTCAACCTGTTCCACTGC
* * *
32454418 AACTTCAGGGAAATAAGATTCGCTATCTTC
63 AACTTCAGGGAAATAAGGTTTGCTA---TG
* * * * * **
32454448 AGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTG----TAGCTTCAACCTACTCCACTGCAA
1 A-TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCAA
*
32454509 CTTCAGGGAGATAAGGTTTGCTATG
65 CTTCAGGGAAATAAGGTTTGCTATG
* * * * *
32454534 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTATTCCATTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGAT-T-T-GTTTATAGCTTCAACCTGTTCCACTGC
* * * *
32454599 AACTTTAGGGAAATAAGATTCGCTATCTTC
63 AACTTCAGGGAAATAAGGTTTGCTA---TG
* *
32454629 AGTCTGCTCCACT-TAACTTCAGAGAGATAAGA
1 A-TCTGCTCTACTGCAACTTCAGAGAGATAAGA
32454661 CTAGTGGCTT
Statistics
Matches: 592, Mismatches: 121, Indels: 83
0.74 0.15 0.10
Matches are distributed among these distances:
85 82 0.14
86 7 0.01
87 35 0.06
88 2 0.00
89 111 0.19
90 83 0.14
91 6 0.01
92 145 0.24
94 1 0.00
95 27 0.05
96 93 0.16
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (89 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTTATAGCTTCAACCTGTTCCACTGCAAC
TTCAGGGAAATAAGGTTTGCTATG
Found at i:32454096 original size:227 final size:228
Alignment explanation
Indices: 32453639--32454166 Score: 566
Period size: 227 Copynumber: 2.3 Consensus size: 228
32453629 TTTAATTCGC
* * * * *
32453639 TCCACTGCAACTTCAAGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
1 TCCAGTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
32453703 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
65 ATAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * *
32453767 ATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACT
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACT
* *** * *
32453832 TCAGGGAGATAAGATTGGTTTATTTTTAACTTGT
195 TCAGGGAAATAAGATTGCACTATCTTCAACTTGT
* ** ** * *
32453866 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
32453931 TAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGG-TT-T-GATATGAT
66 TAAGATTTG-GTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * * ** * *
32453993 TTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTAT--CTTCAATCTGCTCCACTGCAA
* *
32454058 CTTTAGGGAAATAAGATT-CACTATCTTC-AGTCTGT
193 CTTCAGGGAAATAAGATTGCACTATCTTCAACT-TGT
* * * * *
32454093 TCCATTGCAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
32454158 TAAGGTTTG
66 TAAGATTTG
32454167 CTATGATCTG
Statistics
Matches: 246, Mismatches: 49, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
226 41 0.17
227 127 0.52
228 42 0.17
229 36 0.15
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (228 bp):
TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAATA
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACTT
CAGGGAAATAAGATTGCACTATCTTCAACTTGT
Found at i:32454163 original size:181 final size:181
Alignment explanation
Indices: 32453668--32454703 Score: 1181
Period size: 181 Copynumber: 5.7 Consensus size: 181
32453658 GATAGGATTA
** * * **
32453668 ATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GGTATCTTCAACCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
** ** * ** *
32453732 TGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGA
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG-
* * * * * *
32453797 TTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG--GTTT
130 GTT-T-G-CTA---T-GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * ** * * * * * *
32453853 AT--TTTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTG-TGTCTTTAATCTGCCCCA
1 ATAGCTTCAATC-TATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
* ** * * *
32453914 CTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATA
65 CTGCAACTTCAGGGAGATAAGACTTG--TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
* * *
32453979 AGGTTTGATATGATTTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTAATTT
128 AGGTTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * * *
32454033 ATAGCTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCAT
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * *
32454098 TGCAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* *
32454163 TTTGCTATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * * * *
32454214 ATAGCTTCAATATGTTCCACTGCAACTTCAAGAAAATAAGATTCGCTATCTCCAGTCTGTTCTAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * *
32454279 TGCAGCTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* * * *
32454344 TTTGCTATGATTTGCTCTACTGCAACTTCAAAGAGATAAGATCTGCAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * *
32454395 ATAGCTTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * *
32454460 TGCAACTTTAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
32454525 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* *
32454576 ATAGCTTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * * ** * *
32454641 T-TAACTTCAGAGAGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGGGATAAG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
32454704 ATTCGCCATG
Statistics
Matches: 735, Mismatches: 105, Indels: 27
0.85 0.12 0.03
Matches are distributed among these distances:
177 29 0.04
178 3 0.00
180 59 0.08
181 467 0.64
182 33 0.04
183 108 0.15
184 3 0.00
185 33 0.04
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (181 bp):
ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
Found at i:32459091 original size:50 final size:50
Alignment explanation
Indices: 32458983--32459221 Score: 239
Period size: 50 Copynumber: 4.7 Consensus size: 50
32458973 ATTTGGGTAA
* *
32458983 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGTATCATTGAGGCTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG---CACTGA-G--ATG
* * *
32459039 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* ** * * *
32459089 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * * *
32459139 AGA-ACTCCCATGTAAGACCATATCTGGGACATGACATTGGCAGT-ACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* *
32459188 AAACATCCCATGTAAGACCATGTCTGGGACATGG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGG
32459222 TTTTGGCATA
Statistics
Matches: 156, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
49 32 0.21
50 82 0.53
52 1 0.01
53 5 0.03
56 36 0.23
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:32460553 original size:12 final size:12
Alignment explanation
Indices: 32460523--32460580 Score: 62
Period size: 12 Copynumber: 4.6 Consensus size: 12
32460513 AGTATAAAAT
*
32460523 AATAATAATAAC
1 AATAAAAATAAC
*
32460535 AAATAAAAGTAAC
1 -AATAAAAATAAC
*
32460548 AATAAAAAAATAAA
1 AAT--AAAAATAAC
32460562 AATAAAAATAAC
1 AATAAAAATAAC
32460574 AATAAAA
1 AATAAAA
32460581 GAGTAATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 18 0.47
13 10 0.26
14 10 0.26
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (12 bp):
AATAAAAATAAC
Found at i:32460566 original size:26 final size:27
Alignment explanation
Indices: 32460511--32460580 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
32460501 AGAAAACATG
* *
32460511 AAAGTATAAAATAATAATAATAACAAATA
1 AAAGTA-ACAATAA-AAAAATAACAAATA
32460540 AAAGTAACAATAAAAAAATAA-AAATA
1 AAAGTAACAATAAAAAAATAACAAATA
*
32460566 AAAATAACAATAAAA
1 AAAGTAACAATAAAA
32460581 GAGTAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.50
27 7 0.18
28 6 0.16
29 6 0.16
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAGTAACAATAAAAAAATAACAAATA
Found at i:32462156 original size:23 final size:24
Alignment explanation
Indices: 32462101--32462199 Score: 89
Period size: 23 Copynumber: 4.3 Consensus size: 24
32462091 AGTGTTATTG
* * *
32462101 ATCAGTGGCAGCTTCAGTTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
** *
32462125 -TCAACGGTAGCTACGGCTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
**
32462148 A-CAGTGGTAGCTTCAACTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
*
32462170 ATCAGTGGTAGCTTTGGCTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
32462193 ATCAGTG
1 ATCAGTG
32462200 TGACACTTAT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
22 2 0.03
23 57 0.97
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATCAGTGGTAGCTTCGGCTACATT
Found at i:32462199 original size:46 final size:46
Alignment explanation
Indices: 32462101--32462199 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 46
32462091 AGTGTTATTG
** *
32462101 ATCAGTGGCAGCTTCAGTTACATTTCAACGGTAGCTACGGCTACAT
1 ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
* ** **
32462147 -TACAGTGGTAGCTTCAACTACATATCAGTGGTAGCTTTGGCTACAT
1 AT-CAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
32462193 ATCAGTG
1 ATCAGTG
32462200 TGACACTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.02
46 41 0.95
47 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (46 bp):
ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
Found at i:32462449 original size:23 final size:25
Alignment explanation
Indices: 32462403--32462449 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
32462393 GAAATTGCTA
* *
32462403 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
32462428 AGAAATG-TTAATT-GTTAAATGA
1 AGAAATGTTTAATTAGTTAAATGA
32462450 ATATTTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:32469763 original size:25 final size:22
Alignment explanation
Indices: 32469733--32469844 Score: 91
Period size: 25 Copynumber: 4.6 Consensus size: 22
32469723 CTTGAGCTAT
32469733 ATAACGGGAAGCTCATGTGAGCC
1 ATAACGGGAAGCTCATG-GAGCC
32469756 ATGCAACGGGAAGCTCATAGGAGCC
1 AT--AACGGGAAGCTCAT-GGAGCC
*
32469781 ATAATCAGGAAGCTCATGCGAGCC
1 ATAA-CGGGAAGCTCATG-GAGCC
* *
32469805 AAGAACGGGTAGCTC-TGAAGAGCC
1 -ATAACGGGAAGCTCATG--GAGCC
32469829 ATTAATCGGGAAGCTC
1 A-TAA-CGGGAAGCTC
32469845 CGAATAGTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
23 8 0.11
24 31 0.42
25 33 0.45
26 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.29, T:0.16
Consensus pattern (22 bp):
ATAACGGGAAGCTCATGGAGCC
Found at i:32469804 original size:49 final size:49
Alignment explanation
Indices: 32469739--32469844 Score: 135
Period size: 49 Copynumber: 2.2 Consensus size: 49
32469729 CTATATAACG
* * *
32469739 GGAAGCTCATGTGAGCCATGCAACGGGAAGCTCAT-AGGAGCCA-TAATCA
1 GGAAGCTCATGCGAGCCAAG-AACGGGAAGCTC-TGAAGAGCCATTAATCA
* *
32469788 GGAAGCTCATGCGAGCCAAGAACGGGTAGCTCTGAAGAGCCATTAATCG
1 GGAAGCTCATGCGAGCCAAGAACGGGAAGCTCTGAAGAGCCATTAATCA
32469837 GGAAGCTC
1 GGAAGCTC
32469845 CGAATAGTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
47 1 0.02
48 18 0.36
49 31 0.62
ACGTcount: A:0.31, C:0.23, G:0.30, T:0.16
Consensus pattern (49 bp):
GGAAGCTCATGCGAGCCAAGAACGGGAAGCTCTGAAGAGCCATTAATCA
Found at i:32469818 original size:24 final size:23
Alignment explanation
Indices: 32469735--32469819 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 23
32469725 TGAGCTATAT
*
32469735 AACGGGAAGCTCATGTGAGCCATG
1 AACGGGAAGCTCATG-GAGCCAAG
32469759 CAACGGGAAGCTCATAGGAGCCATA-
1 -AACGGGAAGCTCAT-GGAGCCA-AG
* *
32469784 ATCAGGAAGCTCATGCGAGCCAAG
1 AACGGGAAGCTCATG-GAGCCAAG
*
32469808 AACGGGTAGCTC
1 AACGGGAAGCTC
32469820 TGAAGAGCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
23 2 0.04
24 27 0.54
25 20 0.40
26 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.31, T:0.14
Consensus pattern (23 bp):
AACGGGAAGCTCATGGAGCCAAG
Found at i:32472087 original size:25 final size:25
Alignment explanation
Indices: 32472049--32472129 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
32472039 AAGTTTAAGC
32472049 GAGCCA-T-ATTAGGAAGCTCCAAA
1 GAGCCATTAATTAGGAAGCTCCAAA
*
32472072 GAGCCATTAATTAGGAAGCTCACATCA
1 GAGCCATTAATTAGGAAGCTC-CA-AA
* ** *
32472099 -AGCCTTTAATCGGGAAGCTCCGAA
1 GAGCCATTAATTAGGAAGCTCCAAA
32472123 GAGCCAT
1 GAGCCAT
32472130 ATATCGGGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
23 6 0.13
24 2 0.04
25 18 0.39
26 19 0.41
27 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
GAGCCATTAATTAGGAAGCTCCAAA
Found at i:32490010 original size:22 final size:21
Alignment explanation
Indices: 32489977--32490027 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
32489967 TAATATTTCA
32489977 AAAGAAAA-AAAATTAG-TAAT
1 AAAGAAAATAAAA-TAGATAAT
*
32489997 CAAGCAAAATAAAATAGATAAT
1 AAAG-AAAATAAAATAGATAAT
32490019 AAAGAAAAT
1 AAAGAAAAT
32490028 GTTACTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 11 0.42
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.18
Consensus pattern (21 bp):
AAAGAAAATAAAATAGATAAT
Found at i:32492525 original size:12 final size:12
Alignment explanation
Indices: 32492504--32492538 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
32492494 CACATGGCCA
*
32492504 TGTCCCTGCCCG
1 TGTCCTTGCCCG
32492516 TGTCCTTGCCCG
1 TGTCCTTGCCCG
32492528 TGTCCTTGCCC
1 TGTCCTTGCCC
32492539 ATGTAACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31
Consensus pattern (12 bp):
TGTCCTTGCCCG
Found at i:32492598 original size:54 final size:54
Alignment explanation
Indices: 32492513--32492695 Score: 235
Period size: 54 Copynumber: 3.4 Consensus size: 54
32492503 ATGTCCCTGC
** * * *
32492513 CCGTGTCCTTGCCCGTGTC-CTTGCCCATGTAACATTCGAACTAGAGACACATGC
1 CCGTGTCCCAGCCCGTGTCTC-TGACCATGTAACATTCGAACTAGAGACACACGG
* ** *
32492567 CCGTGTCCCAGCTCGTGTCTCTGACTGTGTAACATTCTAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
* * *
32492621 TCGTGTCCCAGCCCGTGTCTCTGCCCATGTAACATTTGAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
32492675 CCGTGT-CCAGCCCGTGTCTCT
1 CCGTGTCCCAGCCCGTGTCTCT
32492696 ACCCGTCTAA
Statistics
Matches: 111, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
53 15 0.14
54 95 0.86
55 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.26
Consensus pattern (54 bp):
CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
Found at i:32492745 original size:108 final size:108
Alignment explanation
Indices: 32492525--32492746 Score: 247
Period size: 108 Copynumber: 2.1 Consensus size: 108
32492515 GTGTCCTTGC
* *
32492525 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACATGCCCGTGTCCCAGCTCGTGTCTCTG
1 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGCCCGTGTCCCAGCCCGTGTCTCTG
* * * * *
32492590 ACTGTGTAACATTCTAACTAGAGACACACGGTCGTGTCCCAGC
66 ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
* *
32492633 CCGTGT-CTCTGCCCATGTAACATTTGAACTAGAGACACACGGCCGTGT-CCAGCCCGTGTCTCT
1 CCGTGTCCT-TGCCCATGTAACATTCGAACTAGAGACACACGCCCGTGTCCCAGCCCGTGTCTCT
* * * *
32492696 -ACCCGTCTAAC-TCACTAAGTAGGGTCACATGG-CTGTGTCACACGA
65 GA-CCGTCTAACAT-ACTAACTAGAGACACACGGTC-GTGTCACA-GA
32492741 CCGTGT
1 CCGTGT
32492747 GCTAGGTCGT
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
106 3 0.03
107 44 0.46
108 49 0.51
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (108 bp):
CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGCCCGTGTCCCAGCCCGTGTCTCTG
ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
Found at i:32494628 original size:20 final size:20
Alignment explanation
Indices: 32494593--32494641 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
32494583 ATCATGGTCT
*
32494593 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTTTTTACTTAC
32494612 TCT-CTTACTTTTTTACTTAC
1 T-TGCTTACTTTTTTACTTAC
32494632 TTGCTTACTT
1 TTGCTTACTT
32494642 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.04, T:0.59
Consensus pattern (20 bp):
TTGCTTACTTTTTTACTTAC
Found at i:32494967 original size:50 final size:49
Alignment explanation
Indices: 32494843--32494987 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 49
32494833 GATAATAACA
* *
32494843 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATGTT-TCATGTAC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATAC
* * * *
32494892 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-C
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
* **
32494940 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 --TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATA
32494988 AACTTAATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.05
49 37 0.46
50 40 0.49
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
Found at i:32499585 original size:40 final size:38
Alignment explanation
Indices: 32499523--32499635 Score: 145
Period size: 40 Copynumber: 2.9 Consensus size: 38
32499513 CGTCAGATAG
*
32499523 ACCGAACACACCAAACAGAAGCTCATAAAAGCTGGTCCA
1 ACCGAA-ACACCAAACAGAAGCTCATAAGAGCTGGTCCA
*
32499562 ACTGAAATACACCAAACAGAAGCTCATAAGAGCTGGTCCA
1 ACCG-AA-ACACCAAACAGAAGCTCATAAGAGCTGGTCCA
* **
32499602 CCCGAAACACGTGAACAGAAGCTCATAAGAGCTG
1 ACCGAAACAC-CAAACAGAAGCTCATAAGAGCTG
32499636 AACAGAAGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
38 4 0.06
39 26 0.40
40 35 0.54
ACGTcount: A:0.42, C:0.27, G:0.19, T:0.12
Consensus pattern (38 bp):
ACCGAAACACCAAACAGAAGCTCATAAGAGCTGGTCCA
Found at i:32499639 original size:21 final size:21
Alignment explanation
Indices: 32499613--32499657 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
32499603 CCGAAACACG
*
32499613 TGAACAGAAGCTCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
32499634 TGAACAGAAGATCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
32499655 TGA
1 TGA
32499658 TCCACCCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
TGAACAGAAGATCATAAGAGC
Found at i:32514418 original size:13 final size:13
Alignment explanation
Indices: 32514400--32514424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32514390 AAAATCTGAT
32514400 TTCAAGTGTATTC
1 TTCAAGTGTATTC
32514413 TTCAAGTGTATT
1 TTCAAGTGTATT
32514425 GTGTATAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCAAGTGTATTC
Found at i:32519729 original size:19 final size:20
Alignment explanation
Indices: 32519707--32519744 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
32519697 CACAATTTAT
*
32519707 CTTAAACATATTA-AAAGCA
1 CTTAAACACATTATAAAGCA
*
32519726 CTTATACACATTATAAAGC
1 CTTAAACACATTATAAAGC
32519745 TTACAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (20 bp):
CTTAAACACATTATAAAGCA
Found at i:32521512 original size:19 final size:19
Alignment explanation
Indices: 32521488--32521550 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
32521478 ATATATATAT
32521488 TAATAAATGATGAATTTAA
1 TAATAAATGATGAATTTAA
* *
32521507 TAATAATATG-TCAAGTTAAA
1 TAATAA-ATGATGAA-TTTAA
32521527 TTTAAT-AAT-ATGAATTTAA
1 --TAATAAATGATGAATTTAA
32521546 TAATA
1 TAATA
32521551 GTAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
17 4 0.12
19 13 0.38
20 12 0.35
21 1 0.03
22 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (19 bp):
TAATAAATGATGAATTTAA
Found at i:32523303 original size:45 final size:44
Alignment explanation
Indices: 32523254--32523338 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
32523244 ATTTGCTATT
*
32523254 CTCAGTCTACCCCACTGCAACTTCAAGGGGGATAAGACCTGTTTA
1 CTCAGTCTACCCCACTGCAACTTC-AGGGAGATAAGACCTGTTTA
* * **
32523299 CTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGACCTG
1 CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTG
32523339 ATGCGATCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTGTTTA
Found at i:32523409 original size:44 final size:44
Alignment explanation
Indices: 32523265--32523935 Score: 315
Period size: 44 Copynumber: 15.5 Consensus size: 44
32523255 TCAGTCTACC
* * * *
32523265 CCACTGCAACTTCAAGGGGGATAAGACCTGTTTAC-TCAGTCTGCT
1 CCACTGCAACTTC-AGGGAGATAAGATCT-ATTACTTCAATCTGCT
** * * * * **
32523310 CTGCTGCAACTTCAGGGAGATAAGA-C-CTGA-TGCGATCCACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
32523351 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * **
32523395 CCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* *** *
32523439 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCGATCTGC-
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * * **
32523483 CCTATTGTAACCTCA-GGAGGATAAGA-C--CTGCTGCGATCCACT
1 CC-ACTGCAACTTCAGGGA-GATAAGATCTATTACTTCAATCTGCT
* * * * *
32523525 CTACTGCAACTTCAGAGAGATAAGATTTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* **
32523569 CCACTACAACTTCAGGGAGAT-AGTAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAG-ATCTAT-TACTTCAATCTGCT
* * * *** * * *
32523613 CCACTGTAACTTTAGGGAGATAAGATTTGCCATCTTCGATCTACC
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * *
32523658 CCACTGCAACCTCAGGGGGATAATA-C--TTGCTACGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * * *
32523699 CTATTGCAACTTCAGAGAGGTAAGATCTATTACTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * **
32523743 CCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* ** * **
32523787 -CACTACTGCTT-AGGGAGATAAGATCTGCTT-CTTCGGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCAATCTGCT
* * * * * * *
32523829 CTACTGTAACCTCAGGGAGATAAGATC--TGA-TGCGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
32523870 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* *
32523914 CCACTACATCTTCAGGGAGATA
1 CCACTGCAACTTCAGGGAGATA
32523936 GGATTTGTGG
Statistics
Matches: 462, Mismatches: 133, Indels: 63
0.70 0.20 0.10
Matches are distributed among these distances:
41 115 0.25
42 28 0.06
43 31 0.07
44 218 0.47
45 70 0.15
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
Found at i:32523508 original size:174 final size:172
Alignment explanation
Indices: 32523321--32523957 Score: 938
Period size: 174 Copynumber: 3.7 Consensus size: 172
32523311 TGCTGCAACT
32523321 TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
32523386 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
*
32523451 CAGGGAGATAAGATTTGCCATCTTCGATCTGCCCTATTGTAACC
130 -AGGGAGATAAGATTTGCCATCTTCGATCTGCCCTACTGTAACC
* *
32523495 TCAGGAGGATAAGACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATTTATTACTT
1 TCAGG-GGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* *
32523560 TAATCCGCTCCACTACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTGCTCCACTGTAACTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAAC-T
* * *
32523625 TAGGGAGATAAGATTTGCCATCTTCGATCTACCCCACTGCAACC
129 TAGGGAGATAAGATTTGCCATCTTCGATCTGCCCTACTGTAACC
* * * * * * *
32523669 TCAGGGGGATAATACTTGCTACGATCTACTCTATTGCAACTTCAGAGAGGTAAGATCTATTACTT
1 TCA-GGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * **
32523734 TAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT-CACTACTGCTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
* * * *
32523798 AGGGAGATAAGATCTG-CTTCTTCGGTCTGCTCTACTGTAACC
130 AGGGAGATAAGATTTGCCATCTTCGATCTGCCCTACTGTAACC
* *
32523840 TCAGGGAGATAAGATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * *
32523905 TAATCCGCTCCACTACATCTTCAGGGAGATAGGATT-TGTGGCTTAAATCTGCT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAT-CGGCTTCAATCTGCT
32523958 TCCTTACTCT
Statistics
Matches: 419, Mismatches: 39, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
170 4 0.01
171 121 0.29
172 17 0.04
173 5 0.01
174 267 0.64
175 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (172 bp):
TCAGGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTTA
GGGAGATAAGATTTGCCATCTTCGATCTGCCCTACTGTAACC
Found at i:32523956 original size:345 final size:348
Alignment explanation
Indices: 32523313--32523957 Score: 1003
Period size: 345 Copynumber: 1.9 Consensus size: 348
32523303 GTCTGCTCTG
* *
32523313 CTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATACGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
32523378 TATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
66 TATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
* * *
32523443 TGCAACTTCAGGGAGATAAGATTTGCCATCTTCGATCTGCCCTATTGTAACCTCAGGAGGATAAG
131 TACAACTTCAGGGAGATAAGATCTGCCATCTTCGATCTGCCCTACTGTAACCTCAGGAGGATAAG
* *
32523508 ACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATTTATTACTTTAATCCGCTCCAC
196 ACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCAC
* *
32523573 TACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGA
261 TACAACTTCAGGGAGATAGGATTATCGGCTTAAATCTGCTCCACTGTAACTTTAGGGAGATAAGA
32523638 TTTGCCATCTTCGATCTACCCCA
326 TTTGCCATCTTCGATCTACCCCA
* * * * * * *
32523661 CTGCAACCTCAGGGGGATAATACTTGCTACGATCTACTCTATTGCAACTTCAGAGAGGTAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATACGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
*
32523726 TATTACTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT-CAC
66 TATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
** * * *
32523790 TACTGCTT-AGGGAGATAAGATCTG-CTTCTTCGGTCTGCTCTACTGTAACCTCAGG-GAGATAA
131 TACAACTTCAGGGAGATAAGATCTGCCATCTTCGATCTGCCCTACTGTAACCTCAGGAG-GATAA
* *
32523852 GATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCA
195 GACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCA
* *
32523917 CTACATCTTCAGGGAGATAGGATT-TGTGGCTTAAATCTGCT
260 CTACAACTTCAGGGAGATAGGATTAT-CGGCTTAAATCTGCT
32523958 TCCTTACTCT
Statistics
Matches: 269, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
344 2 0.01
345 128 0.48
346 15 0.06
347 8 0.03
348 116 0.43
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (348 bp):
CTGCAACCTCAGGGAGATAAGACCTGATACGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
TATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
TACAACTTCAGGGAGATAAGATCTGCCATCTTCGATCTGCCCTACTGTAACCTCAGGAGGATAAG
ACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCAC
TACAACTTCAGGGAGATAGGATTATCGGCTTAAATCTGCTCCACTGTAACTTTAGGGAGATAAGA
TTTGCCATCTTCGATCTACCCCA
Found at i:32524076 original size:129 final size:129
Alignment explanation
Indices: 32523926--32524330 Score: 684
Period size: 129 Copynumber: 3.1 Consensus size: 129
32523916 ACTACATCTT
* * * **
32523926 CAGGGAGATAGGATTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTTACCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
*
32523991 GATCTGCTCTGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
*
32524055 TAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
32524120 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGAAATTTCCCAACCTATTCCACTGTTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* *
32524184 CAGGGATATAGGACTTGTGGCTTAAATTTGATTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * *
32524249 GATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGTACTTTCCCAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
32524313 CAGGGATATAGGACTTGT
1 CAGGGATATAGGACTTGT
32524331 AATCTTCAAC
Statistics
Matches: 259, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 259 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (129 bp):
CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
Found at i:32524342 original size:44 final size:44
Alignment explanation
Indices: 32524293--32524626 Score: 431
Period size: 44 Copynumber: 7.6 Consensus size: 44
32524283 TGTACTTTCC
** *
32524293 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGCAATCTT
* * * *
32524337 CAACCTATTCCATTGATGGTTAGGGAGT-TAGGATTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGA-TATAGGACTTGCAATCTT
* *
32524381 CTACCTATTCCACTACTGGTCAGGGAGT-TAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGA-TATAGGACTTGCAATCTT
32524425 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGA-TATAGGACTTGCAATCTT
* * * *
32524469 CTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGCAATCTT
* * * * *
32524513 CTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTACAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGCAATCTT
** *
32524557 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTACAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGCAATCTT
32524601 CAACCTATTCCACTGCTGGTCAGGGA
1 CAACCTATTCCACTGCTGGTCAGGGA
32524627 GCTAGGTTTT
Statistics
Matches: 260, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
44 259 1.00
45 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (44 bp):
CAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGCAATCTT
Found at i:32524457 original size:132 final size:132
Alignment explanation
Indices: 32524293--32524637 Score: 507
Period size: 132 Copynumber: 2.6 Consensus size: 132
32524283 TGTACTTTCC
* *
32524293 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTAATCTTCAACCTATTCCATTGATGGTT
1 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGATGGTC
* * *
32524358 AGGGAGTTAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATC
66 AGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACAATC
32524423 TT
131 TT
** *
32524425 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTTCTACCTATTCC-TCT-ACTG
1 CAACCTATTCCACTGCTGACCAGGGA-TATAGGACTTGCAATCTTCAACCTATTCCAT-TGA-TG
* *
32524487 GTCAGGGAGATAGGACTTGCAATCTTCTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTACA
63 GTCAGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACA
32524552 ATCTT
128 ATCTT
* * *
32524557 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
1 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGATGGTC
* *
32524622 AGGGAGCTAGGTTTTG
66 AGGGAGATAGGATTTG
32524638 TGGTTTTACC
Statistics
Matches: 188, Mismatches: 19, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
131 3 0.02
132 184 0.98
133 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (132 bp):
CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGATGGTC
AGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACAATC
TT
Found at i:32525872 original size:14 final size:14
Alignment explanation
Indices: 32525845--32525904 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
32525835 TTAGCCTCTC
*
32525845 TATTTTTACTTTTT
1 TATTTTTATTTTTT
32525859 TATTTTT-TTATTTT
1 TATTTTTATT-TTTT
*
32525873 TCATTTTCATTTTTT
1 T-ATTTTTATTTTTT
*
32525888 CATTTTTCATATTTTT
1 TATTTTT-AT-TTTTT
32525904 T
1 T
32525905 CCGACTTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
13 1 0.03
14 17 0.47
15 11 0.31
16 7 0.19
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTTTATTTTTT
Found at i:32525872 original size:15 final size:16
Alignment explanation
Indices: 32525847--32525879 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32525837 AGCCTCTCTA
*
32525847 TTTTTACTTTTTTATT
1 TTTTTACTTTTTCATT
32525863 TTTTTA-TTTTTCATT
1 TTTTTACTTTTTCATT
32525878 TT
1 TT
32525880 CATTTTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTACTTTTTCATT
Found at i:32525887 original size:15 final size:16
Alignment explanation
Indices: 32525869--32525905 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
32525859 TATTTTTTTA
32525869 TTTTTCA-TTTTC-AT
1 TTTTTCATTTTTCAAT
32525883 TTTTTCATTTTTCATAT
1 TTTTTCATTTTTCA-AT
32525900 TTTTTC
1 TTTTTC
32525906 CGACTTAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 7 0.35
15 5 0.25
17 8 0.40
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTCATTTTTCAAT
Found at i:32526796 original size:19 final size:18
Alignment explanation
Indices: 32526761--32526801 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
32526751 TCATTTTTCA
*
32526761 TTTTCTTTTTCTCTTTAT
1 TTTTCTTTTTATCTTTAT
*
32526779 TTTTCATTTTTATTTTTAT
1 TTTTC-TTTTTATCTTTAT
32526798 TTTT
1 TTTT
32526802 TTCATTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTTATCTTTAT
Found at i:32526802 original size:13 final size:13
Alignment explanation
Indices: 32526753--32526801 Score: 59
Period size: 12 Copynumber: 4.0 Consensus size: 13
32526743 TTGGCCTCTC
32526753 ATTTTTCA-TTTT
1 ATTTTTCATTTTT
* *
32526765 CTTTTTC-TCTTT
1 ATTTTTCATTTTT
32526777 ATTTTTCATTTTT
1 ATTTTTCATTTTT
32526790 ATTTTT-ATTTTT
1 ATTTTTCATTTTT
32526802 TTCATTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (13 bp):
ATTTTTCATTTTT
Found at i:32526861 original size:6 final size:6
Alignment explanation
Indices: 32526848--32526916 Score: 111
Period size: 6 Copynumber: 11.3 Consensus size: 6
32526838 TTTTCTTATT
* *
32526848 TTTTGA TTTAGA TTTAGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
32526896 TTTTGA TTTTGA TTTTTGA TT
1 TTTTGA TTTTGA -TTTTGA TT
32526917 GAATCTGAGC
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
6 54 0.90
7 6 0.10
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (6 bp):
TTTTGA
Done.