Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 109 of 196
Found at i:32807538 original size:51 final size:51
Alignment explanation
Indices: 32807478--32807580 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
32807468 CTAACATAAC
*
32807478 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
1 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGAAAGATTTT
32807529 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGAAAGATTTT
1 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGAAAGATTTT
32807580 A
1 A
32807581 AGTATCGCAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (51 bp):
ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGAAAGATTTT
Found at i:32810230 original size:21 final size:21
Alignment explanation
Indices: 32810206--32810246 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32810196 TTTTACAATT
*
32810206 TAATCTTTATGTTTTAATTAA
1 TAATCTTTATGATTTAATTAA
* *
32810227 TAATTTTTTTGATTTAATTA
1 TAATCTTTATGATTTAATTA
32810247 TTCAACCTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
TAATCTTTATGATTTAATTAA
Found at i:32814498 original size:21 final size:21
Alignment explanation
Indices: 32814457--32814499 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32814447 AATAAAGTAG
*
32814457 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
32814478 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
32814499 A
1 A
32814500 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:32814791 original size:16 final size:17
Alignment explanation
Indices: 32814770--32814809 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
32814760 TGAATTACTG
*
32814770 ATTACAGT-TTTATTCA
1 ATTACAGTCTCTATTCA
32814786 ATTACA-TCTCTATTCA
1 ATTACAGTCTCTATTCA
32814802 ATTACAGT
1 ATTACAGT
32814810 GAACCAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (17 bp):
ATTACAGTCTCTATTCA
Found at i:32815012 original size:20 final size:22
Alignment explanation
Indices: 32814987--32815026 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32814977 GGCTGCGTAC
32814987 TGTTT-GG-GAGTTGATTTTAT
1 TGTTTGGGCGAGTTGATTTTAT
32815007 TGTTTGGGCGAGTTGATTTT
1 TGTTTGGGCGAGTTGATTTT
32815027 GTGTAATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.53
Consensus pattern (22 bp):
TGTTTGGGCGAGTTGATTTTAT
Found at i:32824968 original size:20 final size:20
Alignment explanation
Indices: 32824943--32824987 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32824933 TTAAATTTTA
32824943 AATCAAGTTAAAATGATTTC
1 AATCAAGTTAAAATGATTTC
* **
32824963 AATCAAGTTAGAATTTTTTC
1 AATCAAGTTAAAATGATTTC
32824983 AATCA
1 AATCA
32824988 GTAAAATTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (20 bp):
AATCAAGTTAAAATGATTTC
Found at i:32831534 original size:73 final size:73
Alignment explanation
Indices: 32831410--32831585 Score: 239
Period size: 73 Copynumber: 2.4 Consensus size: 73
32831400 AAAATAAGAA
* ** * *
32831410 TTAGCGGCATTTTCCAGAAAGCGCCGCCAAGA-ACCTAAGCCCAACGACGCCGTTTACC-GAGCT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTT-CCTGAGCT
*
32831473 TTTGGGGAT
65 TTCGGGGAT
** * *
32831482 TTAGCGGCGTTTTTGGGAAAGCGCTGCTAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTTCCTGAGCTT
32831547 TCGGGGAT
66 TCGGGGAT
32831555 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAA
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAA
32831586 GCTCAAGGAT
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
72 27 0.30
73 63 0.70
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (73 bp):
TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTTCCTGAGCTT
TCGGGGAT
Found at i:32831633 original size:114 final size:114
Alignment explanation
Indices: 32831481--32832170 Score: 790
Period size: 114 Copynumber: 6.0 Consensus size: 114
32831471 CTTTTGGGGA
* * * * * *
32831481 TTTAGCGGCGTTTTTGGGAAAGCGCTGCTAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGAGCT
1 TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
* * *
32831546 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGCTCAAGGA
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * ** * ** * *
32831595 TTTATCGTCATTTTTTGGAAAGCGCCGGTAAAAAACCTAAGCACAACTACGTCGTTTTCTCAGCT
1 TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
* * * * * *
32831660 TTCGAGGATATAGCGGCGCTTTCAAGAAAGCGCCACTAATGTTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* ** * * *
32831709 TTTAGCGGC-GTTTTTAAAAAGCGCCGCAAAAAAGCCTAAGCCCAATGGCACCGTTTTCTGAGCT
1 TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
* * * *
32831773 TTCGGGGATTTACCGGCGTTTGTACGAAAGCGCCGCTAATGCTCAGGTC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * * *
32831822 TTTAGCGGCATTCTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCT
1 TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
* * * *
32831887 TTCGGGGATTAAGCAGCGTTTTTAATAAAGCGCCGCTAATGCTCGGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* ** * *
32831936 TTTAGCGGCGTTTTTTAAAAAGCGCTGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCT
1 TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
* * * *
32832001 TTCGGGGATTTAGTGGCGTTTTTATGAAAGCACCGCTAATGATCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
** * *
32832050 TTTTAGCGGTGTTTTTTGGGAAAGCGCCGCAAAAAAAAACTAAGCCCAACGGCGCCGTTTTCGGT
1 -TTTAGCGGCATTTTTT-GGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGGCGCCGTTTTCTG-
* * * * *
32832115 A-CTTTCGGGGATTTAGCGGCATTTTTTAGAAAACGCCTCTAATGCTCAGGGA
62 AGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
32832167 TTTA
1 TTTA
32832171 AAATAATTTA
Statistics
Matches: 473, Mismatches: 98, Indels: 8
0.82 0.17 0.01
Matches are distributed among these distances:
113 90 0.19
114 282 0.60
115 15 0.03
116 13 0.03
117 72 0.15
118 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (114 bp):
TTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:32831919 original size:227 final size:226
Alignment explanation
Indices: 32831481--32832170 Score: 837
Period size: 227 Copynumber: 3.0 Consensus size: 226
32831471 CTTTTGGGGA
** * * *
32831481 TTTAGCGGCGTTTTTGGGAAAGCGCTGC-TAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGAGC
1 TTTAGCGGCGTTTTT-AAAAAGCGCTGCAAAAAAG-CCTAAGCCCAACGGCACCGTTTTCTGAGC
* * * *
32831545 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGCTCAAGGATTTATCGTCATTTTT
64 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTC-AGGCTTTAGCGGCATTTTT
* ** * * ** * * *
32831610 TGGAAAGCGCCGGTAAAAAACCTAAGCACAACTACGTCGTTTTCTCAGCTTTCGAGGA-TATAGC
128 GGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCTTTCGGGGATTA-AGC
* * *
32831674 GGCGCTTTCAAGAAAGCGCCACTAATGTTCAGGGC
192 GGCGTTTTTAAGAAAGCGCCACTAATGCTCAGGGC
* *
32831709 TTTAGCGGCGTTTTTAAAAAGCGCCGCAAAAAAGCCTAAGCCCAATGGCACCGTTTTCTGAGCTT
1 TTTAGCGGCGTTTTTAAAAAGCGCTGCAAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGCTT
* * * *
32831774 TCGGGGATTTACCGGCGTTTGTACGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTCTTGG
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGG-CTTTAGCGGCATTTTTGG
* *
32831839 GAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGATTAAGCAGC
130 GAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCTTTCGGGGATTAAGCGGC
* * *
32831904 GTTTTTAATAAAGCGCCGCTAATGCTCGGGGC
195 GTTTTTAAGAAAGCGCCACTAATGCTCAGGGC
*
32831936 TTTAGCGGCGTTTTTTAAAAAGCGCTGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCT
1 TTTAGCGGCG-TTTTTAAAAAGCGCTGCAAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGCT
* * * * **
32832001 TTCGGGGATTTAGTGGCGTTTTTATGAAAGCACCGCTAATGATCAGGGCTTTTAGCGGTGTTTTT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCA-GGC-TTTAGCGG-CATTTT
* *
32832066 TGGGAAAGCGCCGCAAAAAAAAACTAAGCCCAACGGCGCCGTTTTCGGTA-CTTTCGGGGATTTA
127 TGGGAAAGCGCCGC-AAAAAAAACTAAGCCCAACGGCGCCGTTTTCTG-AGCTTTCGGGGATTAA
* * * * *
32832130 GCGGCATTTTTTAGAAAACGCCTCTAATGCTCAGGGA
190 GCGGCGTTTTTAAGAAAGCGCCACTAATGCTCAGGGC
32832167 TTTA
1 TTTA
32832171 AAATAATTTA
Statistics
Matches: 397, Mismatches: 56, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
226 3 0.01
227 176 0.44
228 113 0.28
229 10 0.03
230 17 0.04
231 77 0.19
232 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (226 bp):
TTTAGCGGCGTTTTTAAAAAGCGCTGCAAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGCTTTAGCGGCATTTTTGGG
AAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAGCTTTCGGGGATTAAGCGGCG
TTTTTAAGAAAGCGCCACTAATGCTCAGGGC
Found at i:32832463 original size:37 final size:36
Alignment explanation
Indices: 32832405--32832492 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 36
32832395 GGATTTAAGG
* *
32832405 TTTATGGGTTAGGTGTTATGCTTTAGGGGTTAGGAGA
1 TTTA-GGGTTAGGGGTTATGCTTTAGAGGTTAGGAGA
*
32832442 TTTAGGGATTAGGGGTTATGCTTTAGAGGTTAGGGGA
1 TTTAGGG-TTAGGGGTTATGCTTTAGAGGTTAGGAGA
32832479 TTTAAGGGTTAGGG
1 TTT-AGGGTTAGGG
32832493 TTTCAACGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
36 3 0.07
37 39 0.85
38 4 0.09
ACGTcount: A:0.20, C:0.02, G:0.40, T:0.38
Consensus pattern (36 bp):
TTTAGGGTTAGGGGTTATGCTTTAGAGGTTAGGAGA
Found at i:32832584 original size:7 final size:7
Alignment explanation
Indices: 32832574--32832607 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
32832564 TAATGTCTAT
32832574 GGTTTAG
1 GGTTTAG
*
32832581 GGTTTAA
1 GGTTTAG
32832588 GGTTTAG
1 GGTTTAG
32832595 GGTTTAG
1 GGTTTAG
32832602 GGTTTA
1 GGTTTA
32832608 TGGTATAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:32832586 original size:21 final size:21
Alignment explanation
Indices: 32832562--32832607 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
32832552 AAATTTAAGA
* *
32832562 TTTAATGTCTATGGTTTAGGG
1 TTTAAGGTCTAGGGTTTAGGG
*
32832583 TTTAAGGTTTAGGGTTTAGGG
1 TTTAAGGTCTAGGGTTTAGGG
32832604 TTTA
1 TTTA
32832608 TGGTATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (21 bp):
TTTAAGGTCTAGGGTTTAGGG
Found at i:32832591 original size:14 final size:14
Alignment explanation
Indices: 32832574--32832621 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
32832564 TAATGTCTAT
32832574 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
32832588 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAA
* *
32832602 GGTTTATGGTATAA
1 GGTTTAGGGTTTAA
*
32832616 TGTTTA
1 GGTTTA
32832622 TTAATTTGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:32832620 original size:21 final size:21
Alignment explanation
Indices: 32832574--32832621 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
32832564 TAATGTCTAT
* *
32832574 GGTTTAGGGTTTAAGGTTTAG
1 GGTTTAGGGTTTAAGGTATAA
*
32832595 GGTTTAGGGTTTATGGTATAA
1 GGTTTAGGGTTTAAGGTATAA
*
32832616 TGTTTA
1 GGTTTA
32832622 TTAATTTGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGGTATAA
Found at i:32832971 original size:15 final size:15
Alignment explanation
Indices: 32832953--32832986 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
32832943 GTTGGTTGTT
*
32832953 GGTTTTAGGGTTTAG
1 GGTTTAAGGGTTTAG
32832968 GGTTTAAGGGTTTAG
1 GGTTTAAGGGTTTAG
32832983 GGTT
1 GGTT
32832987 AGATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (15 bp):
GGTTTAAGGGTTTAG
Found at i:32832977 original size:8 final size:7
Alignment explanation
Indices: 32832956--32832986 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
32832946 GGTTGTTGGT
32832956 TTTAGGG
1 TTTAGGG
32832963 TTTAGGG
1 TTTAGGG
32832970 TTTAAGGG
1 TTT-AGGG
32832978 TTTAGGG
1 TTTAGGG
32832985 TT
1 TT
32832987 AGATTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:32833042 original size:15 final size:16
Alignment explanation
Indices: 32833024--32833056 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32833014 AGATAAATAT
*
32833024 AAAATAT-TATTTCAA
1 AAAATATATATATCAA
32833039 AAAATATATATATCAA
1 AAAATATATATATCAA
32833055 AA
1 AA
32833057 TGGGTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATATATATATCAA
Found at i:32833873 original size:115 final size:114
Alignment explanation
Indices: 32833382--32833964 Score: 923
Period size: 114 Copynumber: 5.1 Consensus size: 114
32833372 GCGCTTCAGC
* * *
32833382 AAAAACGCCGCTAAAGGTGATGTATTACCAGCATTTTATGAAGAAACGCTGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* *
32833447 GCGTAACAGAGACGGTGCCTTTTTTTGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* * *
32833496 AAAAACGCCACTTAAGGTGATGTATTATCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* * *
32833561 GTGTAACAGAGATGGTGTCGTTTTTTGTTTTCTTTTAGTGGCGCCTTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* *
32833610 AAAAATGCCGCTAAAGGTGATGTATTACCGGCGTTTAATGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
*
32833675 GTGTAATAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* * *
32833724 AAAAACGCCGTTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCACAAATTTCCTTTAG
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
32833789 GTGTAACAGAGACGGTGCCGTTTTTATGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTT-TGTTTTCTTTTAGTGGCGCATTTT
* * * *
32833839 AAAAATGCTGCTAAAGGTGATGTATTACCGGCGTTTTACGAAGAAGCGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* ** *
32833904 GTGTAACAAAGACGGTGACATTTTTTTGTTTTCTTTTAGTGGCGCATTTA
66 GTGTAACAGAGACGGTG-CCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
32833954 AAAAACGCCGC
1 AAAAACGCCGC
32833965 AAATATTTAT
Statistics
Matches: 428, Mismatches: 39, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
114 292 0.68
115 130 0.30
116 6 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (114 bp):
AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
Found at i:32834478 original size:173 final size:175
Alignment explanation
Indices: 32834168--32834500 Score: 544
Period size: 173 Copynumber: 1.9 Consensus size: 175
32834158 TATTATATCG
* * * *
32834168 AAACTTAAACGCCAACTTAAACGTGACTTATCCCTCAAAATTCCATCCTCCCCCAAATCCCTAAA
1 AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCAAAA
*
32834233 ATTTCCTCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
66 ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
*
32834298 CACCGTCTCCGTCCGTTGGTCTCCTCTGCCCCATACATTTTACCA
131 CACCGTCTCCGTCCGTCGGTCTCCTCTGCCCCATACATTTTACCA
* * *
32834343 AAACTTAAACCCCAAC-T-ATCGTGACTTATCCCCCAAAATCCCATTCTCCCCCAAGTCCCAAAA
1 AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCAAAA
* * *
32834406 ATTTCCCCTAATCCATATTTCCCCAAACTCGACCTCTTGCGACGTTGCCGTTTCCTCTGGCGCAT
66 ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
32834471 CACCGTCTCCGTCCGTCGGTCTCCTCTGCC
131 CACCGTCTCCGTCCGTCGGTCTCCTCTGCC
32834501 GTAACATTCG
Statistics
Matches: 146, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
173 130 0.89
174 1 0.01
175 15 0.10
ACGTcount: A:0.23, C:0.39, G:0.11, T:0.27
Consensus pattern (175 bp):
AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCAAAA
ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
CACCGTCTCCGTCCGTCGGTCTCCTCTGCCCCATACATTTTACCA
Found at i:32835559 original size:9 final size:9
Alignment explanation
Indices: 32835545--32835603 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
32835535 CTTAATTTAA
*
32835545 TACATAATT
1 TACATAACT
32835554 TACATAACT
1 TACATAACT
*
32835563 CACATAACT
1 TACATAACT
* *
32835572 TACAAAAGT
1 TACATAACT
* *
32835581 CACAT-ACA
1 TACATAACT
32835589 TACATAACT
1 TACATAACT
32835598 TA-ATAA
1 TACATAA
32835604 ATGGTACATA
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
8 9 0.24
9 29 0.76
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (9 bp):
TACATAACT
Found at i:32835730 original size:9 final size:9
Alignment explanation
Indices: 32835716--32835975 Score: 176
Period size: 9 Copynumber: 28.4 Consensus size: 9
32835706 TATTGACACA
32835716 TTACATAAC
1 TTACATAAC
32835725 TTACATAAC
1 TTACATAAC
*
32835734 CTACATAA-
1 TTACATAAC
*
32835742 -AACATAAC
1 TTACATAAC
*
32835750 CTACATAAC
1 TTACATAAC
*
32835759 TTATATAAC
1 TTACATAAC
32835768 TTACATAA-
1 TTACATAAC
32835776 -TACATAAC
1 TTACATAAC
*
32835784 TTAAATAA-
1 TTACATAAC
*
32835792 ATACATAAC
1 TTACATAAC
32835801 TTACATAATAAC
1 TTAC---ATAAC
*
32835813 TTACATAGC
1 TTACATAAC
*
32835822 TTATATAAC
1 TTACATAAC
32835831 TTACATAAC
1 TTACATAAC
*
32835840 TTACATATC
1 TTACATAAC
**
32835849 TTTTATAA-
1 TTACATAAC
32835857 TATATGCATAAC
1 T-TA--CATAAC
*
32835869 TTACATAAT
1 TTACATAAC
*
32835878 TTACTTAA-
1 TTACATAAC
32835886 -TACATAAC
1 TTACATAAC
*
32835894 TTACATATAT
1 TTACATA-AC
*
32835904 TATATCTTAAC
1 T-TA-CATAAC
*
32835915 TTACATAATAAT
1 TTAC---ATAAC
*
32835927 TTACATAGC
1 TTACATAAC
*
32835936 TTATATAAC
1 TTACATAAC
32835945 TTACATAAC
1 TTACATAAC
*
32835954 TTATATAAC
1 TTACATAAC
*
32835963 TTACATAAT
1 TTACATAAC
32835972 TTAC
1 TTAC
32835976 TTAATACATA
Statistics
Matches: 195, Mismatches: 36, Indels: 40
0.72 0.13 0.15
Matches are distributed among these distances:
7 19 0.10
8 7 0.04
9 135 0.69
10 4 0.02
11 10 0.05
12 20 0.10
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:32835746 original size:25 final size:25
Alignment explanation
Indices: 32835718--32835808 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
32835708 TTGACACATT
* *
32835718 ACATAACTTACATAACCTACATAAA
1 ACATAACTTACATAACTTAAATAAA
* * *
32835743 ACATAACCTACATAACTTATATAACTT
1 ACATAACTTACATAACTTAAATAA--A
32835770 ACATAA--TACATAACTTAAATAAA
1 ACATAACTTACATAACTTAAATAAA
32835793 TACATAACTTACATAA
1 -ACATAACTTACATAA
32835809 TAACTTACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
24 6 0.11
25 36 0.65
26 7 0.13
27 6 0.11
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.29
Consensus pattern (25 bp):
ACATAACTTACATAACTTAAATAAA
Found at i:32835748 original size:16 final size:16
Alignment explanation
Indices: 32835727--32835808 Score: 83
Period size: 16 Copynumber: 4.9 Consensus size: 16
32835717 TACATAACTT
*
32835727 ACATAACCTACATAAA
1 ACATAACTTACATAAA
* *
32835743 ACATAACCTACATAACTT
1 ACATAACTTACATAA--A
* *
32835761 ATATAACTTACATAAT
1 ACATAACTTACATAAA
*
32835777 ACATAACTTAAATAAA
1 ACATAACTTACATAAA
32835793 TACATAACTTACATAA
1 -ACATAACTTACATAA
32835809 TAACTTACAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
16 29 0.52
17 14 0.25
18 13 0.23
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.28
Consensus pattern (16 bp):
ACATAACTTACATAAA
Found at i:32835760 original size:34 final size:34
Alignment explanation
Indices: 32835717--32835838 Score: 128
Period size: 34 Copynumber: 3.7 Consensus size: 34
32835707 ATTGACACAT
*
32835717 TACATAACTTACATAACCTACATAAAACATAACC
1 TACATAACTTACATAACTTACATAAAACATAACC
* * *
32835751 TACATAACTTATATAACTTACATAATACATAACT
1 TACATAACTTACATAACTTACATAAAACATAACC
* * *
32835785 TAAATAA-ATACATAACTTACAT---A-ATAACT
1 TACATAACTTACATAACTTACATAAAACATAACC
* *
32835814 TACATAGCTTATATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
32835839 CTTACATATC
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
29 11 0.15
30 14 0.19
33 13 0.18
34 36 0.49
ACGTcount: A:0.49, C:0.19, G:0.01, T:0.31
Consensus pattern (34 bp):
TACATAACTTACATAACTTACATAAAACATAACC
Found at i:32835931 original size:114 final size:110
Alignment explanation
Indices: 32835753--32835956 Score: 318
Period size: 114 Copynumber: 1.8 Consensus size: 110
32835743 ACATAACCTA
*
32835753 CATAACTTATATAACTTACATAATACATAACTTAAATAAATACATAACTTACATAATAACTTACA
1 CATAACTTACATAACTTACATAATACATAACTTAAATAAATACATAACTTACATAATAACTTACA
32835818 TAGCTTATATAACTTACATAACTTACATATCTTTTATAATATATG
66 TAGCTTATATAACTTACATAACTTACATATCTTTTATAATATATG
* * * * *
32835863 CATAACTTACATAATTTACTTAATACATAACTTACATATATTATATCTTAACTTACATAATAATT
1 CATAACTTACATAACTTACATAATACATAACTTA-A-ATA-AATA-CATAACTTACATAATAACT
32835928 TACATAGCTTATATAACTTACATAACTTA
62 TACATAGCTTATATAACTTACATAACTTA
32835957 TATAACTTAC
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
110 31 0.37
111 1 0.01
112 3 0.04
113 3 0.04
114 46 0.55
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.39
Consensus pattern (110 bp):
CATAACTTACATAACTTACATAATACATAACTTAAATAAATACATAACTTACATAATAACTTACA
TAGCTTATATAACTTACATAACTTACATATCTTTTATAATATATG
Found at i:32835971 original size:114 final size:110
Alignment explanation
Indices: 32835720--32835971 Score: 314
Period size: 114 Copynumber: 2.3 Consensus size: 110
32835710 GACACATTAC
* * ** *
32835720 ATAACTTACATAACCTACATAA--AACATAACCTA--CATAACTTATATAACTTACATAATACAT
1 ATAACTTACATAACTTACATAACTTACATAATATATGCATAACTTACATAACTTACATAATACAT
32835781 AACTTAAATAAATACATAACTTACATAATAACTTACATAGCTTAT
66 AACTTAAATAAATACATAACTTACATAATAACTTACATAGCTTAT
* ** * *
32835826 ATAACTTACATAACTTACATATCTTTTATAATATATGCATAACTTACATAATTTACTTAATACAT
1 ATAACTTACATAACTTACATAACTTACATAATATATGCATAACTTACATAACTTACATAATACAT
* * *
32835891 AACTTACATATATTATATCTTAACTTACATAATAATTTACATAGCTTAT
66 AACTTA-A-ATA-AATA-CATAACTTACATAATAACTTACATAGCTTAT
*
32835940 ATAACTTACATAACTTATATAACTTACATAAT
1 ATAACTTACATAACTTACATAACTTACATAAT
32835972 TTACTTAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
106 20 0.17
108 6 0.05
110 31 0.26
111 1 0.01
112 3 0.02
113 3 0.02
114 57 0.47
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (110 bp):
ATAACTTACATAACTTACATAACTTACATAATATATGCATAACTTACATAACTTACATAATACAT
AACTTAAATAAATACATAACTTACATAATAACTTACATAGCTTAT
Found at i:32836022 original size:12 final size:12
Alignment explanation
Indices: 32836005--32836030 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32835995 TATTATATCT
32836005 TAACTTACATAA
1 TAACTTACATAA
32836017 TAACTTACATAA
1 TAACTTACATAA
32836029 TA
1 TA
32836031 CATAACTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
TAACTTACATAA
Found at i:32838358 original size:43 final size:43
Alignment explanation
Indices: 32838293--32838606 Score: 145
Period size: 42 Copynumber: 7.4 Consensus size: 43
32838283 CTAAAAGGCG
* * * *
32838293 TGTTCTATAGTGGTGTTTGTGAAGAAAGCGCCGCTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
* *
32838336 T-TTCTTTTAGCGGCGTTCGTGAAGAAAGCGTCGCTAAAGATCA
1 TGTTC-TTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
* ******
32838379 TGTTCTTTAGCGGCGTT-TTTCTTCTAGCGCCGCTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
* * ******
32838421 TGATCTTTAGCGGCGTT-TTTCTTCTAGCGCCGCTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
* * * * *** *
32838463 TGATCTTTAGAGGCG-TCTTTATTTTAAGCGCCACTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGA-AGAAAGCGCCGCTAAAGAACA
* * ****** *
32838506 TGATCTTTAGCGGCGTT-TTTCTTCTAGCGCCACTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
* * * ***
32838548 TGATCTTTAGCGGCG-TCTTTATTTTAAGCGCCGCTAAAGAACA
1 TGTTCTTTAGCGGCGTTCGTGA-AGAAAGCGCCGCTAAAGAACA
**
32838591 TGACCTTTAGCGGCGT
1 TGTTCTTTAGCGGCGT
32838607 CTATTTTCGT
Statistics
Matches: 233, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
41 2 0.01
42 114 0.49
43 113 0.48
44 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTTCTTTAGCGGCGTTCGTGAAGAAAGCGCCGCTAAAGAACA
Found at i:32838428 original size:42 final size:42
Alignment explanation
Indices: 32838362--32838606 Score: 355
Period size: 42 Copynumber: 5.8 Consensus size: 42
32838352 TCGTGAAGAA
* * *
32838362 AGCGTCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTCTTCT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
32838404 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
* * * *
32838446 AGCGCCGCTAAAGAACATGATCTTTAGAGGCGTCTTTATTTT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
*
32838488 AAGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
1 -AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
* * * *
32838531 AGCGCCACTAAAGAACATGATCTTTAGCGGCGTCTTTATTTT
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
*
32838573 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGT
1 -AGCGCCGCTAAAGAACATGATCTTTAGCGGCGT
32838607 CTATTTTCGT
Statistics
Matches: 184, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
42 116 0.63
43 68 0.37
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
Found at i:32838432 original size:85 final size:85
Alignment explanation
Indices: 32838362--32838606 Score: 393
Period size: 85 Copynumber: 2.9 Consensus size: 85
32838352 TCGTGAAGAA
* * * * * *
32838362 AGCGTCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTCTTCT-AGCGCCGCTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGATC
32838426 TTTAGCGGCGTTTTTCTTCT
66 TTTAGCGGCGTTTTTCTTCT
* *
32838446 AGCGCCGCTAAAGAACATGATCTTTAGAGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGATC
32838511 TTTAGCGGCGTTTTTCTTCT
66 TTTAGCGGCGTTTTTCTTCT
* *
32838531 AGCGCCACTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGACC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGATC
32838596 TTTAGCGGCGT
66 TTTAGCGGCGT
32838607 CTATTTTCGT
Statistics
Matches: 148, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 35 0.24
85 113 0.76
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (85 bp):
AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTCTTCT
Found at i:32841465 original size:10 final size:10
Alignment explanation
Indices: 32841452--32841611 Score: 68
Period size: 10 Copynumber: 16.2 Consensus size: 10
32841442 AATTTAGTAC
32841452 AATTATAAAA
1 AATTATAAAA
32841462 AATTAT-AAA
1 AATTATAAAA
32841471 AA-TATATAAA
1 AATTATA-AAA
*
32841481 AATGAATAAATA
1 AAT-TATAAA-A
32841493 AAGCTTATAAAA
1 AA--TTATAAAA
**
32841505 AATCCT-AAA
1 AATTATAAAA
**
32841514 AATCCTAAAA
1 AATTATAAAA
*
32841524 TATT-T-AAA
1 AATTATAAAA
*
32841532 AATTATATAA
1 AATTATAAAA
*
32841542 ACTTATAAAA
1 AATTATAAAA
*
32841552 AA-TA-GAAA
1 AATTATAAAA
*
32841560 AATTAGGAAAA
1 AATTA-TAAAA
*
32841571 AATCATAAAA
1 AATTATAAAA
32841581 AA-TAT-AAA
1 AATTATAAAA
* *
32841589 TATTATCAAA
1 AATTATAAAA
*
32841599 ACTTATAACAA
1 AATTATAA-AA
32841610 AA
1 AA
32841612 AATAAAAATA
Statistics
Matches: 113, Mismatches: 21, Indels: 31
0.68 0.13 0.19
Matches are distributed among these distances:
8 18 0.16
9 25 0.22
10 43 0.38
11 12 0.11
12 9 0.08
13 5 0.04
14 1 0.01
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (10 bp):
AATTATAAAA
Found at i:32841473 original size:9 final size:9
Alignment explanation
Indices: 32841452--32841620 Score: 70
Period size: 9 Copynumber: 17.3 Consensus size: 9
32841442 AATTTAGTAC
32841452 AATTATAAAA
1 AATTAT-AAA
32841462 AATTATAAA
1 AATTATAAA
32841471 AATATATAAA
1 AAT-TATAAA
*
32841481 AATGAATAAATA
1 AAT-TAT-AA-A
32841493 AAGCTTATAAAA
1 AA--TTAT-AAA
**
32841505 AATCCTAAA
1 AATTATAAA
**
32841514 AATCCTAAA
1 AATTATAAA
32841523 ATATT-TAAA
1 A-ATTATAAA
32841532 AATTATATAA
1 AATTATA-AA
*
32841542 ACTTATAAA
1 AATTATAAA
* *
32841551 AAATAGAAA
1 AATTATAAA
*
32841560 AATTAGGAAAA
1 AATTA--TAAA
*
32841571 AATCATAAA
1 AATTATAAA
*
32841580 AAATATAAA
1 AATTATAAA
*
32841589 TATTATCAAA
1 AATTAT-AAA
*
32841599 ACTTATAACA
1 AATTATAA-A
**
32841609 AAAAATAAA
1 AATTATAAA
32841618 AAT
1 AAT
32841621 ATTTAAATTA
Statistics
Matches: 123, Mismatches: 24, Indels: 25
0.72 0.14 0.15
Matches are distributed among these distances:
8 3 0.02
9 57 0.46
10 42 0.34
11 9 0.07
12 6 0.05
13 5 0.04
14 1 0.01
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (9 bp):
AATTATAAA
Found at i:32841481 original size:19 final size:19
Alignment explanation
Indices: 32841455--32841620 Score: 53
Period size: 19 Copynumber: 8.6 Consensus size: 19
32841445 TTAGTACAAT
32841455 TATA-AAAAATTATAAAAA
1 TATATAAAAATTATAAAAA
*
32841473 TATATAAAAATGAATAAATAA
1 TATATAAAAAT-TATAAA-AA
**
32841494 -AGCTTATAAAAAATCCTAAAAA
1 TA---TAT-AAAAATTATAAAAA
* *
32841516 TCCTA-AAATATT-TAAAAA
1 T-ATATAAAAATTATAAAAA
*
32841534 T-TATATAAACTTATAAAAA
1 TATATA-AAAATTATAAAAA
* *
32841553 -ATAGAAAAATTAGGAAAAA
1 TATATAAAAATTA-TAAAAA
* *
32841572 -ATCATAAAAAATATAAATA
1 TAT-ATAAAAATTATAAAAA
*
32841591 T-TATCAAAACTTATAACAAA
1 TATAT-AAAAATTATAA-AAA
*
32841611 -AAATAAAAAT
1 TATATAAAAAT
32841621 ATTTAAATTA
Statistics
Matches: 109, Mismatches: 20, Indels: 37
0.66 0.12 0.22
Matches are distributed among these distances:
16 2 0.02
17 1 0.01
18 23 0.21
19 46 0.42
20 18 0.17
21 4 0.04
22 2 0.02
23 7 0.06
24 6 0.06
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (19 bp):
TATATAAAAATTATAAAAA
Found at i:32841594 original size:57 final size:58
Alignment explanation
Indices: 32841511--32841620 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 58
32841501 AAAAAATCCT
* * * *
32841511 AAAAATCCTAAAATATTTAAAAATTAT-ATAAACTTATAA-AAAATAGAAAAATTAGGA
1 AAAAATCATAAAAAATATAAAAATTATCA-AAACTTATAACAAAAAAGAAAAATTAGGA
* *
32841568 AAAAATCATAAAAAATATAAATATTATCAAAACTTATAACAAAAAATAAAAAT
1 AAAAATCATAAAAAATATAAAAATTATCAAAACTTATAACAAAAAAGAAAAAT
32841621 ATTTAAATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 33 0.73
58 12 0.27
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (58 bp):
AAAAATCATAAAAAATATAAAAATTATCAAAACTTATAACAAAAAAGAAAAATTAGGA
Found at i:32841599 original size:29 final size:28
Alignment explanation
Indices: 32841511--32841620 Score: 85
Period size: 29 Copynumber: 3.9 Consensus size: 28
32841501 AAAAAATCCT
* * *
32841511 AAAAATCCTAAAATATTTAAAAATTATA
1 AAAAATCATAAAAAATATAAAAATTATA
* * * * *
32841539 TAAACTTATAAAAAATAGAAAAATTAGGA
1 AAAAATCATAAAAAATATAAAAATTA-TA
* *
32841568 AAAAATCATAAAAAATATAAATATTATC
1 AAAAATCATAAAAAATATAAAAATTATA
* * *
32841596 AAAACTTATAACAAAAAATAAAAAT
1 AAAAATCATAA-AAAATATAAAAAT
32841621 ATTTAAATTA
Statistics
Matches: 61, Mismatches: 19, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
28 28 0.46
29 33 0.54
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (28 bp):
AAAAATCATAAAAAATATAAAAATTATA
Found at i:32846757 original size:44 final size:44
Alignment explanation
Indices: 32846709--32846798 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
32846699 ATATCTCAAG
*
32846709 GTCCATGTTTATAACATGGAAATGAAGGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGAAATGAAGAAAGAATTGACGGAAAA
* * *
32846753 GTCCATGTTTATAACATGGCAATTAAGAAATAATTGACGGAAAA
1 GTCCATGTTTATAACATGGAAATGAAGAAAGAATTGACGGAAAA
32846797 GT
1 GT
32846799 ACCTTGGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGAAATGAAGAAAGAATTGACGGAAAA
Found at i:32846897 original size:50 final size:50
Alignment explanation
Indices: 32846822--32847068 Score: 307
Period size: 50 Copynumber: 4.9 Consensus size: 50
32846812 CATGTCAACA
* *
32846822 CGAGATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
*
32846872 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGTCATTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * ** *
32846922 TGAGATGAGAGGTCTCC-TGTAAGACCATGTCTGGCACATGGTGTTGGAAC
1 CGAGATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * * *
32846972 CGAGATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGACATGGGCAT
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* ** * * * *
32847022 CGATATGAGAACTCCCATGTAAGACCATTTCTAGGATATGACATTGG
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
32847069 GAGTACAGGA
Statistics
Matches: 170, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 2 0.01
50 166 0.98
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
Found at i:32852686 original size:44 final size:44
Alignment explanation
Indices: 32852638--32852727 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
32852628 ATATCTCAAG
* * *
32852638 GTCCATGTTTATAACATGGCAATGAAGGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACAGAAAA
*
32852682 GTCCATGTTTATAACATGGCAATTAAGAAAGAAATGACAGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACAGAAAA
32852726 GT
1 GT
32852728 ACCTTGGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.23
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACAGAAAA
Found at i:32852826 original size:50 final size:50
Alignment explanation
Indices: 32852751--32852997 Score: 282
Period size: 50 Copynumber: 4.9 Consensus size: 50
32852741 CATGTCAACA
* *
32852751 CGAGATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
*
32852801 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGTCATTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * ** * *
32852851 TGAGATGAGAGGTCTCC-TGTAAGACCATGTCTGGCACATGGTGTTAGAAC
1 CGAGATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * * * *
32852901 CGAGATGAGAGGTCCCCTGTAAGACCAT-TGCTGGGACATGACATGGGTAT
1 CGAGATGAGAGGTCCCATGTAAGACCATGT-CTGGGACATGGCATTGGCAC
* ** * * *
32852951 CGATATGAGAACTCCCATGTAAGACCATTTCTAGGATATGGCATTGG
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
32852998 GAGTATAGGA
Statistics
Matches: 166, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 3 0.02
50 160 0.96
51 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
Found at i:32856600 original size:26 final size:23
Alignment explanation
Indices: 32856583--32856632 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 23
32856573 ATTTTAATAG
32856583 ATTTAATATTAAATTTA-TT-AT
1 ATTTAATATTAAATTTATTTAAT
32856604 -TTTAATATTAAATTTAATTTAAT
1 ATTTAATATTAAATTT-ATTTAAT
32856627 ATTTAA
1 ATTTAA
32856633 CTTGTAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 15 0.60
21 1 0.04
22 2 0.08
23 2 0.08
24 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTTAATATTAAATTTATTTAAT
Found at i:32856841 original size:26 final size:24
Alignment explanation
Indices: 32856812--32856861 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
32856802 AATTGTAGAG
32856812 AGAAAATTCTCT-GAAGAAATTATTTC
1 AGAAAATT-TCTAG-AGAAATT-TTTC
32856838 AGAAAATTTCTAGAGAAATTTTTC
1 AGAAAATTTCTAGAGAAATTTTTC
32856862 TTATTTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.17
25 10 0.43
26 9 0.39
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (24 bp):
AGAAAATTTCTAGAGAAATTTTTC
Found at i:32860099 original size:33 final size:33
Alignment explanation
Indices: 32860032--32860099 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
32860022 TTAAAAGAGC
* * *
32860032 TTTAATGCGAAAGGTAAAATGACTAAGAGGCCT
1 TTTAATGCGAAAGGTAAAATGACCAACAGACCT
32860065 TTTAATGCGAAAGGTAAAA-GATCCAACCA-ACCT
1 TTTAATGCGAAAGGTAAAATGA-CCAA-CAGACCT
32860098 TT
1 TT
32860100 AGAACTTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
32 2 0.07
33 27 0.90
34 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (33 bp):
TTTAATGCGAAAGGTAAAATGACCAACAGACCT
Found at i:32860706 original size:15 final size:15
Alignment explanation
Indices: 32860686--32860717 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32860676 CATTTCACTA
*
32860686 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
32860701 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
32860716 TT
1 TT
32860718 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:32862633 original size:62 final size:61
Alignment explanation
Indices: 32862549--32862680 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 61
32862539 TTAATTTAAT
* * * *
32862549 ATTAAAGTAAGTATCTTAATATTAAATTTAATTTCATGTTTATCTTGTAGATAAATATTCTATTA
1 ATTAAA-TAAGTATCTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTA
*
32862614 ATTAAATAAG-AT-TTAATATTAAATTTAATCTAATATTTTTCTTGATAAATATTATATTA
1 ATTAAATAAGTATCTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTA
*
32862673 ATTTAATA
1 ATTAAATA
32862681 TTAAAGTGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
59 22 0.36
60 1 0.02
61 1 0.02
62 25 0.41
63 2 0.03
64 4 0.07
65 6 0.10
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (61 bp):
ATTAAATAAGTATCTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTA
Found at i:32863636 original size:12 final size:12
Alignment explanation
Indices: 32863621--32863645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32863611 AGAAAGAAAG
32863621 AAAAAGAATTAA
1 AAAAAGAATTAA
32863633 AAAAAGAATTAA
1 AAAAAGAATTAA
32863645 A
1 A
32863646 GTAAAATAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAAGAATTAA
Found at i:32864570 original size:30 final size:30
Alignment explanation
Indices: 32864496--32864583 Score: 98
Period size: 25 Copynumber: 3.1 Consensus size: 30
32864486 TCCATATTTA
32864496 TGGAAAGTCAAAGATATGGGTATC-AA-A-
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
32864523 T--AAAGTCAAATATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
32864551 TGGAAAG-CTAAAGATATGGGTATCGAGATAT
1 TGGAAAGTC-AAAGATATGGGTATC-AAATAT
32864582 TG
1 TG
32864584 ACATAAGAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
25 20 0.39
26 2 0.04
27 2 0.04
28 1 0.02
29 1 0.02
30 18 0.35
31 7 0.14
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:32869191 original size:25 final size:28
Alignment explanation
Indices: 32869156--32869242 Score: 108
Period size: 25 Copynumber: 3.1 Consensus size: 28
32869146 CATATTTATG
32869156 GAAAGTCAAAGATATGGGTATCAA-A-T
1 GAAAGTCAAAGATATGGGTATCAATATT
*
32869182 -AAAGTCAAAGGTATGGGTATCAATTATT
1 GAAAGTCAAAGATATGGGTATCAA-TATT
32869210 GGAAAGTCAAAGATATGGGTATCGAGATATT
1 -GAAAGTCAAAGATATGGGTATC-A-ATATT
32869241 GA
1 GA
32869243 CATAAGAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 22 0.42
27 1 0.02
28 1 0.02
30 22 0.42
31 5 0.10
32 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.26
Consensus pattern (28 bp):
GAAAGTCAAAGATATGGGTATCAATATT
Found at i:32869218 original size:30 final size:27
Alignment explanation
Indices: 32869153--32869232 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 27
32869143 ATCCATATTT
32869153 ATGGAAAGTCAAAGATATGGGTATCAA
1 ATGGAAAGTCAAAGATATGGGTATCAA
*
32869180 AT--AAAGTCAAAGGTATGGGTATCAA
1 ATGGAAAGTCAAAGATATGGGTATCAA
32869205 TTATTGGAAAGTCAAAGATATGGGTATC
1 --A-TGGAAAGTCAAAGATATGGGTATC
32869233 GAGATATTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
25 22 0.48
27 3 0.07
28 1 0.02
30 20 0.43
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.26
Consensus pattern (27 bp):
ATGGAAAGTCAAAGATATGGGTATCAA
Found at i:32870978 original size:17 final size:16
Alignment explanation
Indices: 32870951--32870982 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32870941 GAACTTATCC
32870951 TTGGTTTTGGATTGAT
1 TTGGTTTTGGATTGAT
32870967 TTGGTGTTTGGATTGA
1 TTGGT-TTTGGATTGA
32870983 AGTGCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.12, C:0.00, G:0.34, T:0.53
Consensus pattern (16 bp):
TTGGTTTTGGATTGAT
Found at i:32871968 original size:15 final size:15
Alignment explanation
Indices: 32871948--32871976 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32871938 GTTACCCCTA
32871948 CTATTGTACCTGTAC
1 CTATTGTACCTGTAC
32871963 CTATTGTACCTGTA
1 CTATTGTACCTGTA
32871977 TCGAGATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (15 bp):
CTATTGTACCTGTAC
Found at i:32890080 original size:24 final size:24
Alignment explanation
Indices: 32890048--32890097 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
32890038 AAGATAGATC
*
32890048 TTACAATGTATATTAATATATTTT
1 TTACAATGTATACTAATATATTTT
32890072 TTACAATGTATACTAATATATTTT
1 TTACAATGTATACTAATATATTTT
32890096 TT
1 TT
32890098 CTTTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (24 bp):
TTACAATGTATACTAATATATTTT
Found at i:32897584 original size:17 final size:17
Alignment explanation
Indices: 32897524--32897586 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
32897514 TTATTATGCG
*
32897524 AAAATAAAAA-ATTCCT
1 AAAATAAAAATAATCCT
*
32897540 AATA-AAAAATAATCCT
1 AAAATAAAAATAATCCT
*
32897556 AAAATATTAAATAA-CCT
1 AAAATA-AAAATAATCCT
32897573 AAGAATAAAAATAA
1 AA-AATAAAAATAA
32897587 AATAAAGTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 5 0.13
16 11 0.29
17 12 0.32
18 10 0.26
ACGTcount: A:0.65, C:0.10, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAATAAAAATAATCCT
Found at i:32899758 original size:30 final size:30
Alignment explanation
Indices: 32899701--32899759 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
32899691 GCCTTTTGAA
* *
32899701 AATATTTACAAAAAGAGTCATCTAATTTTT
1 AATATTTACAAAAAGAGTCACCAAATTTTT
*
32899731 AATATTTACAAAACGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGTC-ACCAAATTTT
32899760 GAAAACAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGTCACCAAATTTTT
Found at i:32900700 original size:16 final size:17
Alignment explanation
Indices: 32900669--32900701 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32900659 CATATTCTAG
32900669 CATATATCAAAACATAT
1 CATATATCAAAACATAT
*
32900686 CATATA-CAGAACATAT
1 CATATATCAAAACATAT
32900702 AACAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (17 bp):
CATATATCAAAACATAT
Found at i:32902223 original size:42 final size:43
Alignment explanation
Indices: 32902117--32902227 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
32902107 CTCGTACAAG
* * *
32902117 GCCAACGTCCCAGACGTGGTCTTACTTGGAAACAAATATCGAT
1 GCCAATGTCCCAGACATGGTCTTACATGGAAACAAATATCGAT
* * * * *
32902160 GTCACTGTCCCAGATAGGGTCTTACAT-GAAATCATATA-CGAT
1 GCCAATGTCCCAGACATGGTCTTACATGGAAA-CAAATATCGAT
*
32902202 GCCAATGTCCAAGACATGGTCTTACA
1 GCCAATGTCCCAGACATGGTCTTACA
32902228 CGTAAGTCTC
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 29 0.54
43 25 0.46
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACATGGAAACAAATATCGAT
Found at i:32908535 original size:16 final size:17
Alignment explanation
Indices: 32908507--32908539 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
32908497 CATATTCTAG
32908507 CATATATCAAAACATAT
1 CATATATCAAAACATAT
32908524 CATATA-CAAAACATAT
1 CATATATCAAAACATAT
32908540 AACAAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
CATATATCAAAACATAT
Found at i:32910141 original size:42 final size:43
Alignment explanation
Indices: 32910059--32910168 Score: 98
Period size: 42 Copynumber: 2.6 Consensus size: 43
32910049 TCTTACTTGT
* * * * *
32910059 AATCAAATATCGATGCCATTGTCCGAGACAGGGTCTTACACGA
1 AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACGA
* *
32910102 AATCATATAT-GATGCCAATGTCCCAAACATAGTCCTACACGTA
1 AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACG-A
* * *
32910145 AGTCTCAA-ATCGATGCCAACGTCC
1 AATC-AAATATCGATGCCAATGTCC
32910169 TAGCGTGGGC
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 25 0.47
43 15 0.28
44 13 0.25
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATGTCCCAAACAGAGTCCTACACGA
Found at i:32914270 original size:11 final size:11
Alignment explanation
Indices: 32914242--32914283 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
32914232 CTTCATTCAT
*
32914242 CATCCCCCAAG
1 CATCCCTCAAG
32914253 CATCCCTCAAG
1 CATCCCTCAAG
*
32914264 CATCCCTCAAT
1 CATCCCTCAAG
*
32914275 CATTCCTCA
1 CATCCCTCA
32914284 TTCATTCTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.26, C:0.48, G:0.05, T:0.21
Consensus pattern (11 bp):
CATCCCTCAAG
Found at i:32937065 original size:21 final size:21
Alignment explanation
Indices: 32937041--32937108 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
32937031 ACTCATATGA
32937041 GTTTCAGTTTAACCCTTTTGG
1 GTTTCAGTTTAACCCTTTTGG
* * *
32937062 GTTTCAGTTCAGCTCTTTTGAG
1 GTTTCAGTTTAACCCTTTTG-G
*
32937084 CTTT-AGTTTAA-CCTTTATGG
1 GTTTCAGTTTAACCCTTT-TGG
32937104 GTTTC
1 GTTTC
32937109 CATTTAGCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
20 8 0.22
21 24 0.67
22 4 0.11
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.49
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTTTGG
Found at i:32937163 original size:21 final size:21
Alignment explanation
Indices: 32937102--32937163 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
32937092 TAACCTTTAT
* *
32937102 GGGTTTCCATTTAGCACTTAT
1 GGGTTTCCGTTTAGCACTTAC
* * * *
32937123 GAGCTTCCGTTTAACCCTTAC
1 GGGTTTCCGTTTAGCACTTAC
*
32937144 GGGTTTTCGTTTAGCACTTA
1 GGGTTTCCGTTTAGCACTTA
32937164 TGTGCTTCTG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (21 bp):
GGGTTTCCGTTTAGCACTTAC
Found at i:32937171 original size:42 final size:42
Alignment explanation
Indices: 32937036--32937171 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
32937026 ACTTAACTCA
* * ** * *
32937036 TATGAGTTTCAGTTTAACCCTTTTGGGTTT-CAGTTCAGCTCT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCA-TTTAGCACT
* ** * *
32937078 TTTGAGCTTTAGTTTAACCTTTATGGGTTTCCATTTAGCACT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
* *
32937120 TATGAGCTTCCGTTTAACCCTTACGGGTTTTCGTTTAGCACT
1 TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
*
32937162 TATGTGCTTC
1 TATGAGCTTC
32937172 TGTGCAGCCT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 76 0.97
43 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TATGAGCTTCCGTTTAACCCTTACGGGTTTCCATTTAGCACT
Found at i:32941645 original size:18 final size:17
Alignment explanation
Indices: 32941625--32941658 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32941615 CATTTTTGGA
*
32941625 AAAACCTTTATTTTCGT
1 AAAACCTTGATTTTCGT
32941642 AAAACCTTGATTTTCGT
1 AAAACCTTGATTTTCGT
32941659 CAAATGCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (17 bp):
AAAACCTTGATTTTCGT
Found at i:32949442 original size:27 final size:27
Alignment explanation
Indices: 32949309--32949448 Score: 90
Period size: 27 Copynumber: 5.3 Consensus size: 27
32949299 AAAGGTTGTT
* * *
32949309 AAATGACAGTAATACCCCCA-TAAGGTA
1 AAATGACCGTAACA-CCCCAGTAGGGTA
* * * *
32949336 AAATGACTGAAATACCCCTGTAGGGT-
1 AAATGACCGTAACACCCCAGTAGGGTA
* ** ***
32949362 AAATGATCGTAATGCCATTGTAGGGTA
1 AAATGACCGTAACACCCCAGTAGGGTA
* * *
32949389 AAATGATCGTAATACCCCAGTAAGGTA
1 AAATGACCGTAACACCCCAGTAGGGTA
32949416 AAATGACCGTAACACCCCTAG-AGGGT-
1 AAATGACCGTAACACCCC-AGTAGGGTA
32949442 AAATGAC
1 AAATGAC
32949449 TATTTTTCCC
Statistics
Matches: 92, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
26 31 0.34
27 59 0.64
28 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
AAATGACCGTAACACCCCAGTAGGGTA
Found at i:32949780 original size:21 final size:21
Alignment explanation
Indices: 32949739--32949780 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32949729 TATCCCCACA
* *
32949739 TGGTGTGTTGGTTGGTATGGG
1 TGGTGTATTGGTTGATATGGG
32949760 TGGTGTATTGGTTTGAT-TGGG
1 TGGTGTATTGG-TTGATATGGG
32949781 CTGGATTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.07, C:0.00, G:0.48, T:0.45
Consensus pattern (21 bp):
TGGTGTATTGGTTGATATGGG
Found at i:32953880 original size:14 final size:14
Alignment explanation
Indices: 32953852--32953890 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
32953842 CTAGAAAAAG
*
32953852 AAACAATTTTCCAA
1 AAACCATTTTCCAA
* *
32953866 AAATCATTTTTCAA
1 AAACCATTTTCCAA
32953880 AAACCATTTTC
1 AAACCATTTTC
32953891 GGTCAAACAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACCATTTTCCAA
Found at i:32956802 original size:18 final size:19
Alignment explanation
Indices: 32956765--32956803 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
32956755 ATTAAAGAAT
*
32956765 AATTTAATTTTAGTGTTAA
1 AATTTAATTTTAGTGGTAA
*
32956784 AATTT-ATTTTTGTGGTAA
1 AATTTAATTTTAGTGGTAA
32956802 AA
1 AA
32956804 ATTTGACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (19 bp):
AATTTAATTTTAGTGGTAA
Found at i:32962384 original size:16 final size:16
Alignment explanation
Indices: 32962363--32962394 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32962353 AAATTGGTTG
*
32962363 ATTTTTAGTTTAATTA
1 ATTTTTAGGTTAATTA
32962379 ATTTTTAGGTTAATTA
1 ATTTTTAGGTTAATTA
32962395 GATTAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATTTTTAGGTTAATTA
Found at i:32967902 original size:27 final size:27
Alignment explanation
Indices: 32967790--32967917 Score: 96
Period size: 27 Copynumber: 4.7 Consensus size: 27
32967780 AATCCATTGG
** ** *
32967790 GACAGTAAATGTGGGGTAGCCCACTAG
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
32967817 GACAGTAAACATGGGGTAGCTCA-TCGA
1 GACAGTAAACATGGGGTAGTTCACT-AA
* * * * *
32967844 TACAATAAACACGGGGTAATTCACTGA
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
32967871 TACAGTAAACATGGGGTAGTTCGCTAA
1 GACAGTAAACATGGGGTAGTTCACTAA
* *
32967898 GACAGTAAACACGAGGTAGT
1 GACAGTAAACATGGGGTAGT
32967918 CTATTGGGAC
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.20
Consensus pattern (27 bp):
GACAGTAAACATGGGGTAGTTCACTAA
Found at i:32971337 original size:6 final size:6
Alignment explanation
Indices: 32971326--32971356 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
32971316 GTGATGATGT
32971326 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA A
32971357 TGGTTTCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:32992233 original size:50 final size:50
Alignment explanation
Indices: 32992151--32992428 Score: 324
Period size: 50 Copynumber: 5.6 Consensus size: 50
32992141 CGATCTCATA
* *
32992151 TAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
*
32992201 TAAGACCATG-CTTGGGACATGGCATTGGCACCGAGATGAGAGGTCTCATG
1 TAAGACCATGTC-TGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * * *
32992251 TAAGACCATCTCTGGGACATTGCGTTGGCACCAAGATGAGAGGTACCACG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * * *
32992301 TAAAACCATGTCTAGGACATGGCGTTGGCACCGGGATGATAGGTCCCCTG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* * * * * **
32992351 TAAGACCATGTTTGGGACATGACATGGGCACCGATATTAGATCTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
* *
32992401 TAAGACCATATCTGGGATATGGCATTGG
1 TAAGACCATGTCTGGGACATGGCATTGG
32992429 TAGTACAGGA
Statistics
Matches: 188, Mismatches: 38, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
49 1 0.01
50 186 0.99
51 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATG
Found at i:32994038 original size:23 final size:23
Alignment explanation
Indices: 32994000--32994050 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32993990 GGGAGAGAAA
*
32994000 TGTAATATCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
32994023 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
32994046 AGTAA
1 TGTAA
32994051 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:32998155 original size:52 final size:53
Alignment explanation
Indices: 32998082--32998188 Score: 144
Period size: 52 Copynumber: 2.0 Consensus size: 53
32998072 CCATGGCAAC
* * * * *
32998082 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGTCATCGGTGTG
1 ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
* *
32998135 ATGTGAT-TATGAGTTCCGTATAAAACCATATCTGGGATATGGCATTGGTGTG
1 ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
32998187 AT
1 AT
32998189 ATGTGCTACT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 40 0.85
53 7 0.15
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (53 bp):
ATGTGATATATGAGTTCCGTATAAAACCATAGCTGGGATATGGCATCGGTGTG
Found at i:32998303 original size:49 final size:50
Alignment explanation
Indices: 32998231--32998365 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 50
32998221 TGGCATCAGT
* *
32998231 GTGATTGCGTGTAAGACCATAGCTGGGCTATGGCATCAG-TAAGTGATAC
1 GTGATTACGTGTAAGACCATAGCTGGACTATGGCATCAGTTAAGTGATAC
* * * * * *
32998280 GTGATTCCGTGTAAGACCATAGCTGGACTATGTCAT-TGTTATGTGTTAT
1 GTGATTACGTGTAAGACCATAGCTGGACTATGGCATCAGTTAAGTGATAC
* **
32998329 GTAATTACGTGTAAGACCATAATTGGACTATGGCATC
1 GTGATTACGTGTAAGACCATAGCTGGACTATGGCATC
32998366 GAGAAAACGA
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.01
49 71 0.99
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
GTGATTACGTGTAAGACCATAGCTGGACTATGGCATCAGTTAAGTGATAC
Found at i:33003772 original size:16 final size:18
Alignment explanation
Indices: 33003740--33003772 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33003730 TACGAATTGC
33003740 ATAAAATATTACCTAAAA
1 ATAAAATATTACCTAAAA
33003758 ATAAAAT-TT-CCTAAA
1 ATAAAATATTACCTAAA
33003773 TATTCATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAAATATTACCTAAAA
Found at i:33004013 original size:15 final size:15
Alignment explanation
Indices: 33003993--33004022 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33003983 TGAATGTAAT
33003993 TCACTCATGAAGCTA
1 TCACTCATGAAGCTA
33004008 TCACTCATGAAGCTA
1 TCACTCATGAAGCTA
33004023 AGGCTTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (15 bp):
TCACTCATGAAGCTA
Found at i:33011486 original size:50 final size:50
Alignment explanation
Indices: 33011389--33011667 Score: 317
Period size: 50 Copynumber: 5.5 Consensus size: 50
33011379 GTGAGCTAGC
*
33011389 GTAAGACCATGTCTGGGACATGGCATTGGCACCGTTAAGATTATGAGAGGTCCCAT
1 GTAAGACCATGTCTGGGACATGGCGTTGGCACCG---AG---ATGAGAGGTCCCAT
* *
33011445 GTAAGACCATGTCTGGGACATGGCGTTTGCACTGAGATGAGAGGTCCCAT
1 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCAT
* * *
33011495 GTAAGACCATATCTGGGACATGGCGTTGGCACCAAGATGGGAGGTCCCAT
1 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCAT
* * * **
33011545 GTAAGACAATTTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCAT
* * * * * **
33011595 GTAAGAGCATGTCTGGGACATGGCATGGGCAGCGATATGAGAACTCCCA-
1 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCAT
* *
33011644 GTAAGACCATATCTGGGATATGGC
1 GTAAGACCATGTCTGGGACATGGC
33011668 AATGGCAGTA
Statistics
Matches: 194, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
49 21 0.11
50 140 0.72
53 2 0.01
56 31 0.16
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCAT
Found at i:33022146 original size:29 final size:29
Alignment explanation
Indices: 33022083--33022150 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
33022073 TAATCAACCA
33022083 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
33022112 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
33022141 CGCACACTTA
1 CGCACACTTA
33022151 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:33025541 original size:143 final size:145
Alignment explanation
Indices: 33025280--33025593 Score: 537
Period size: 143 Copynumber: 2.2 Consensus size: 145
33025270 CAACCGACTT
33025280 CCATGCATTTCAAGTTCGCACACTTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCA
1 CCATGCATTTCAAGTTCGCACACTTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCA
33025345 CCCTTAATGTAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTT-ATAATCAAC
66 CCCTTAATGTAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAAC
33025409 CGCGCACA-TTAGTG
131 CGCGCACACTTAGTG
*
33025423 CCATGCATTTCAAGTTCGGACAC-TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCA
1 CCATGCATTTCAAGTTCGCACACTTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCA
33025487 CCCTTAATGTAAATAATTTATAGAAAAATATATATT-GGTTCGCACACATAGTGCTTAATAATCA
66 CCCTTAATGT-AATAATTTATAG-AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCA
33025551 ACCGCGCACACTTAGTG
129 ACCGCGCACACTTAGTG
* * *
33025568 CCATGTACTTTAAACTTCGCACACTT
1 CCATGCA-TTTCAAGTTCGCACACTT
33025594 AGTGCTGTAC
Statistics
Matches: 160, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
142 51 0.32
143 54 0.34
144 29 0.18
145 12 0.08
146 13 0.08
147 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (145 bp):
CCATGCATTTCAAGTTCGCACACTTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCA
CCCTTAATGTAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAAC
CGCGCACACTTAGTG
Found at i:33025590 original size:30 final size:29
Alignment explanation
Indices: 33025550--33025628 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 29
33025540 CTTAATAATC
33025550 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCC-TGTACATTTA
*
33025580 AACTTCGCACACTTAGTG-CTGTACAATTTA
1 AAC-CCGCACACTTAGTGCCTGTAC-ATTTA
33025610 AACCCGCACACTTAGTGCC
1 AACCCGCACACTTAGTGCC
33025629 GAAAACCAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 5 0.12
29 14 0.33
30 24 0.56
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCTGTACATTTA
Found at i:33028536 original size:29 final size:29
Alignment explanation
Indices: 33028473--33028540 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
33028463 TAATCAACCA
33028473 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
33028502 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
33028531 CGCACACTTA
1 CGCACACTTA
33028541 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:33028826 original size:29 final size:29
Alignment explanation
Indices: 33028787--33028864 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
33028777 CTTAATAATC
33028787 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCC-TGTACATTTA
*
33028817 AACTCGCACACTTAGTG-CTGTACAATTTA
1 AACCCGCACACTTAGTGCCTGTAC-ATTTA
33028846 AACCCGCACACTTAGTGCC
1 AACCCGCACACTTAGTGCC
33028865 GAAAACCAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCTGTACATTTA
Found at i:33028830 original size:145 final size:145
Alignment explanation
Indices: 33028504--33028809 Score: 603
Period size: 145 Copynumber: 2.1 Consensus size: 145
33028494 TTTAAACTCA
33028504 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
33028569 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
33028634 TAATAATCAACCGCG
131 TAATAATCAACCGCG
*
33028649 CACACTTAGTGCCATGCATTTCAAGTTCGGACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
33028714 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
33028779 TAATAATCAACCGCG
131 TAATAATCAACCGCG
33028794 CACACTTAGTGCCATG
1 CACACTTAGTGCCATG
33028810 TACTTTAAAC
Statistics
Matches: 160, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 160 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (145 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAACCGCG
Found at i:33036790 original size:29 final size:29
Alignment explanation
Indices: 33036727--33036794 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
33036717 TAATCAACCA
33036727 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
33036756 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
33036785 CGCACACTTA
1 CGCACACTTA
33036795 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:33037080 original size:29 final size:30
Alignment explanation
Indices: 33037041--33037119 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
33037031 CTTAATAATC
33037041 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
33037071 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
33037100 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33037120 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:33037084 original size:145 final size:145
Alignment explanation
Indices: 33036758--33037063 Score: 603
Period size: 145 Copynumber: 2.1 Consensus size: 145
33036748 TTTAAACTCA
33036758 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
33036823 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
33036888 TAATAATCAACCGCG
131 TAATAATCAACCGCG
*
33036903 CACACTTAGTGCCATGCATTTCAAGTTCGGACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
33036968 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
33037033 TAATAATCAACCGCG
131 TAATAATCAACCGCG
33037048 CACACTTAGTGCCATG
1 CACACTTAGTGCCATG
33037064 TACTTTAAAC
Statistics
Matches: 160, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 160 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (145 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
TAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAACCGCG
Found at i:33042009 original size:22 final size:22
Alignment explanation
Indices: 33041981--33042022 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
33041971 ATCATTAGTC
*
33041981 GGTGATCGTTTTGTAAATTGTT
1 GGTGATCGATTTGTAAATTGTT
33042003 GGTGATCGATTTGTAAATTG
1 GGTGATCGATTTGTAAATTG
33042023 ATTTCTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (22 bp):
GGTGATCGATTTGTAAATTGTT
Found at i:33042148 original size:10 final size:10
Alignment explanation
Indices: 33042133--33042158 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
33042123 TTTTTAATTT
33042133 TAAAATTTTA
1 TAAAATTTTA
33042143 TAAAATTTTA
1 TAAAATTTTA
33042153 TAAAAT
1 TAAAAT
33042159 AAAAGACAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAAAATTTTA
Found at i:33049642 original size:50 final size:50
Alignment explanation
Indices: 33049530--33049878 Score: 225
Period size: 50 Copynumber: 6.6 Consensus size: 50
33049520 ATTTTGGTAA
* * * * *
33049530 AGAGATCCCATGTAAGATCATGTCTGAGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATG
*
33049586 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT--G
*
33049638 AGGTCCCATGTAAAGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATA
1 A-G----A-G----GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * * * *
33049698 AGAGGTCTCATGTAGGACCATGTCTTGGAGATGTCGTTAGCACCTAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
33049748 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * * *
33049798 AGAACTCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATG
* ** *
33049847 AAACATCCCATGTAAGACTATGTCTGGGACAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACAT
33049879 ATCTTTGGCA
Statistics
Matches: 235, Mismatches: 45, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
49 28 0.12
50 113 0.48
52 2 0.01
53 4 0.02
54 1 0.00
55 2 0.01
56 37 0.16
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
62 44 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:33049665 original size:62 final size:62
Alignment explanation
Indices: 33049590--33049711 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
33049580 ATTATGAGAG
*
33049590 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGGTCCCATGTAAA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATAAGAGGTCCCATGTAAA
* *
33049652 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCTCATGTA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATAAGAGGTCCCATGTA
33049712 GGACCATGTC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (62 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGCCACCGAGATAAGAGGTCCCATGTAAA
Found at i:33049753 original size:112 final size:116
Alignment explanation
Indices: 33049535--33049756 Score: 292
Period size: 112 Copynumber: 1.9 Consensus size: 116
33049525 GGTAAAGAGA
* *
33049535 TCCCATGTAAGATCATGTCTGAGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCA-CGAGATTA-GAGAGGTCCCATGTA
33049600 AGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGGTCCCATGTAAAG
64 AGACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGGTCCCATGTAAAG
* * * *
33049653 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGAGA-TA-AGAGGTCTCATGTAGG
1 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCACGAGATTAGAGAGGTCCCATGTAAG
* * * *
33049714 ACCATGTCTTGGAGATGTCGTTAG-CACCTAGATGAGAGGTCCC
66 ACCATGTCTGGGACATGGCGTT-GCCACCGAGATGAGAGGTCCC
33049757 CCGTAAGACC
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
112 51 0.55
113 1 0.01
114 2 0.02
115 4 0.04
117 1 0.01
118 34 0.37
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (116 bp):
TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCACGAGATTAGAGAGGTCCCATGTAAG
ACCATGTCTGGGACATGGCGTTGCCACCGAGATGAGAGGTCCCATGTAAAG
Found at i:33053984 original size:15 final size:15
Alignment explanation
Indices: 33053964--33053993 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33053954 ACCACGATAA
*
33053964 ATTTGTGAAATGTTG
1 ATTTGTAAAATGTTG
33053979 ATTTGTAAAATGTTG
1 ATTTGTAAAATGTTG
33053994 TATAGGCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (15 bp):
ATTTGTAAAATGTTG
Found at i:33057207 original size:22 final size:22
Alignment explanation
Indices: 33057177--33057220 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33057167 TTTAGGAGCT
*
33057177 GCATGTCTAGAGACATTAGGCA
1 GCATATCTAGAGACATTAGGCA
* *
33057199 GCATATCTAGGGACATTGGGCA
1 GCATATCTAGAGACATTAGGCA
33057221 AAATGTCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (22 bp):
GCATATCTAGAGACATTAGGCA
Found at i:33060542 original size:25 final size:25
Alignment explanation
Indices: 33060524--33060750 Score: 190
Period size: 25 Copynumber: 9.1 Consensus size: 25
33060514 AGGCTTTTTT
** **
33060524 GAGAATTTTCCACAAAGGCTTTTAA
1 GAGAATTCACCACAAAGGCTTTCCA
* * **
33060549 GAGGATTCGCTGCAAAGGCTTTCCA
1 GAGAATTCACCACAAAGGCTTTCCA
* * *
33060574 GAGAATTTACCACAAAGCCTTTCTA
1 GAGAATTCACCACAAAGGCTTTCCA
*
33060599 GAGGATTCACCACAAAGGCTTTCCA
1 GAGAATTCACCACAAAGGCTTTCCA
*
33060624 GAGAATTCACCACAAAGGCTTTTCA
1 GAGAATTCACCACAAAGGCTTTCCA
* *
33060649 GA-AGATTCGCCACAAAGGATTTCCA
1 GAGA-ATTCACCACAAAGGCTTTCCA
* * **
33060674 AATAATTTTCCACAAAGGCTGTT-CA
1 GAGAATTCACCACAAAGGCT-TTCCA
**
33060699 GA-AGATTCATGACAAAGGCTTTCCA
1 GAGA-ATTCACCACAAAGGCTTTCCA
* * *
33060724 GAGAATTCACCGCAAAGACTTTTCA
1 GAGAATTCACCACAAAGGCTTTCCA
33060749 GA
1 GA
33060751 CATCTGTGTT
Statistics
Matches: 159, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
24 4 0.03
25 151 0.95
26 4 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (25 bp):
GAGAATTCACCACAAAGGCTTTCCA
Found at i:33060588 original size:50 final size:50
Alignment explanation
Indices: 33060524--33060750 Score: 258
Period size: 50 Copynumber: 4.5 Consensus size: 50
33060514 AGGCTTTTTT
* * * **
33060524 GAGAATTTTCCACAAAGGCTTTTAAGAGGATTCGCTGCAAAGGCTTTCCA
1 GAGAATTTACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGCTTTCCA
* * *
33060574 GAGAATTTACCACAAA-GCCTTTCTAGAGGATTCACCACAAAGGCTTTCCA
1 GAGAATTTACCACAAAGGCTTTTC-AGAAGATTCGCCACAAAGGCTTTCCA
* *
33060624 GAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCCA
1 GAGAATTTACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGCTTTCCA
* * * * ***
33060674 AATAATTTTCCACAAAGGCTGTTCAGAAGATTCATGACAAAGGCTTTCCA
1 GAGAATTTACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGCTTTCCA
* * *
33060724 GAGAATTCACCGCAAAGACTTTTCAGA
1 GAGAATTTACCACAAAGGCTTTTCAGA
33060751 CATCTGTGTT
Statistics
Matches: 148, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 5 0.03
50 137 0.93
51 6 0.04
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (50 bp):
GAGAATTTACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGCTTTCCA
Found at i:33060687 original size:100 final size:100
Alignment explanation
Indices: 33060524--33060750 Score: 294
Period size: 100 Copynumber: 2.3 Consensus size: 100
33060514 AGGCTTTTTT
** * * ** * *
33060524 GAGAATTTTCCACAAAGGCTTTTAAGAGGATTCGCTGCAAAGGCTTTCCAGAGAATTTACCACAA
1 GAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCCAAAGAATTTACCACAA
*
33060589 AGCCT-TTCTAGAGGATTCACCACAAAGGCTTTCCA
66 AGCCTGTTC-AGAAGATTCACCACAAAGGCTTTCCA
* *
33060624 GAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCCAAATAATTTTCCACAA
1 GAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCCAAAGAATTTACCACAA
* **
33060689 AGGCTGTTCAGAAGATTCATGACAAAGGCTTTCCA
66 AGCCTGTTCAGAAGATTCACCACAAAGGCTTTCCA
* *
33060724 GAGAATTCACCGCAAAGACTTTTCAGA
1 GAGAATTCACCACAAAGGCTTTTCAGA
33060751 CATCTGTGTT
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 107 0.97
101 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (100 bp):
GAGAATTCACCACAAAGGCTTTTCAGAAGATTCGCCACAAAGGATTTCCAAAGAATTTACCACAA
AGCCTGTTCAGAAGATTCACCACAAAGGCTTTCCA
Found at i:33070541 original size:37 final size:35
Alignment explanation
Indices: 33070500--33070574 Score: 132
Period size: 37 Copynumber: 2.1 Consensus size: 35
33070490 TTCGATTTGT
33070500 GATAATTTTAAATGCATGCATGAAAGCTCTAGACATA
1 GATAATTTTAAATGCATGCATGAAAGCTCTA-A-ATA
33070537 GATAATTTTAAATGCATGCATGAAAGCTCTAAATA
1 GATAATTTTAAATGCATGCATGAAAGCTCTAAATA
33070572 GAT
1 GAT
33070575 TGGATTATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 6 0.16
36 1 0.03
37 31 0.82
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (35 bp):
GATAATTTTAAATGCATGCATGAAAGCTCTAAATA
Found at i:33075219 original size:27 final size:27
Alignment explanation
Indices: 33075189--33075242 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
33075179 ATATATAATT
33075189 ATTA-TAAAATAATTAAATTTTACTTAA
1 ATTATTAAAAT-ATTAAATTTTACTTAA
* * *
33075216 ATTATTAACATGTTGAATTTTACTTAA
1 ATTATTAAAATATTAAATTTTACTTAA
33075243 TTTTATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATTAAAATATTAAATTTTACTTAA
Found at i:33077225 original size:53 final size:54
Alignment explanation
Indices: 33077154--33077411 Score: 326
Period size: 53 Copynumber: 4.8 Consensus size: 54
33077144 AAATACCCTA
* *
33077154 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCC
1 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
** * * *
33077208 ATA-AATAAAATGACTGAAATACCCTCATATGGTAAAATGA-TCGAAATATCCCT
1 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACT-GAAATATCCCC
* * * * * *
33077261 ATCGGGTAAAATAACTTAATTACCCCCATAGGGTAAAATGACCGAATTATCCCC
1 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
* *
33077315 ATAGGGTAAAATGACTGAATTACCCCCATAAGGT-AAATGACTGAAATATCCCC
1 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
*
33077368 ATAGGGTAAAATGA-TCAAAATACCCCCATAGGGTAAAATGACTG
1 ATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATGACTG
33077412 TTATACCTCT
Statistics
Matches: 172, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.01
53 89 0.52
54 81 0.47
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22
Consensus pattern (54 bp):
ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGAAATATCCCC
Found at i:33077270 original size:80 final size:81
Alignment explanation
Indices: 33077144--33077411 Score: 321
Period size: 80 Copynumber: 3.3 Consensus size: 81
33077134 GTTATGACCA
*
33077144 AAATACCCTAATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCA
**
33077209 TA-AATAAAATGACTG
66 TAGGGTAAAATGACTG
* * * * * *
33077224 AAATACCCTCATATGGTAAAATGA-TCGAAATATCCCTATCGGGTAAAATAACTTAATTACCCCC
1 AAATACCCTCATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATAACTGAAATACCCCC
*
33077288 ATAGGGTAAAATGACCG
65 ATAGGGTAAAATGACTG
* * * * *
33077305 AATTATCCC-CATAGGGTAAAATGACTGAATTACCCCCATAAGGT-AAATGACTGAAATATCCCC
1 AAATA-CCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCC
*
33077368 ATAGGGTAAAATGA-TCA
65 ATAGGGTAAAATGACT-G
*
33077385 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCTCATAGGGTAAAATGACTG
33077412 TTATACCTCT
Statistics
Matches: 158, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
79 4 0.03
80 109 0.69
81 41 0.26
82 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (81 bp):
AAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCA
TAGGGTAAAATGACTG
Found at i:33077389 original size:134 final size:134
Alignment explanation
Indices: 33077154--33077406 Score: 375
Period size: 134 Copynumber: 1.9 Consensus size: 134
33077144 AAATACCCTA
*
33077154 ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAATAAAAT
1 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAATAAAAT
* * * * *
33077219 GACTGAAATACCCTCATATGGTAAAATGATCGAAATATCCCTATCGGGTAAAATAACTTAATTAC
66 GACTGAAATACCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATAACTTAATTAC
33077284 CCCC
131 CCCC
* * * * *
33077288 ATAGGGTAAAATGACCGAATTATCCCCATAGGGTAAAATGACTGAATTACCCCCATAAGGT-AAA
1 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAA-ATAAAA
33077352 TGACTGAAATATCCC-CATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAAT
65 TGACTGAAATA-CCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAAT
33077407 GACTGTTATA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
134 102 0.96
135 4 0.04
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (134 bp):
ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAAATAAAAT
GACTGAAATACCCTCATAGGGTAAAATGATCAAAATACCCCCATAGGGTAAAATAACTTAATTAC
CCCC
Found at i:33077418 original size:27 final size:27
Alignment explanation
Indices: 33077144--33077411 Score: 310
Period size: 27 Copynumber: 10.0 Consensus size: 27
33077134 GTTATGACCA
**
33077144 AAATACCCTAATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
33077171 AAATACCCCCATAGGGTAAAATAACTG
1 AAATACCCCCATAGGGTAAAATGACTG
**
33077198 AAATACCCCCATA-AATAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
33077224 AAATACCCTCATATGGTAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* * * * *
33077251 AAATATCCCTATCGGGTAAAATAACTT
1 AAATACCCCCATAGGGTAAAATGACTG
* *
33077278 AATTACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
33077305 AATTATCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
33077332 AATTACCCCCATAAGGT-AAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
33077358 AAATATCCCCATAGGGTAAAATGA-TCA
1 AAATACCCCCATAGGGTAAAATGACT-G
33077385 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
33077412 TTATACCTCT
Statistics
Matches: 202, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 47 0.23
27 153 0.76
28 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:33077613 original size:26 final size:26
Alignment explanation
Indices: 33077574--33077628 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
33077564 TGGAGAAAGT
* *
33077574 ATACTGTTAGTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTCGCTGCG
*
33077600 ATACTGTTACTGGCAGCTTCGCTGTG
1 ATACTGTTACTGGCAGCTTCGCTGCG
33077626 ATA
1 ATA
33077629 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.35
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTCGCTGCG
Found at i:33080031 original size:27 final size:26
Alignment explanation
Indices: 33080001--33080399 Score: 354
Period size: 27 Copynumber: 14.9 Consensus size: 26
33079991 TGTTATAACT
*
33080001 GAAATACACCCATAGGGTAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGA-C
* *
33080028 GAAATACCCCCAGAGGATAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGA-C
*
33080055 GAAATACCCTCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* * *
33080082 AAAATACCCCCATATGGTAAAATAAC
1 GAAATACCCCCATAGGGTAAAATGAC
** * *
33080108 AGAAATACCCCTTTATGTTAAAATGACC
1 -GAAATACCCCCATAGGGTAAAATGA-C
* * *
33080136 GAATTACCCCCATAAGGTAAAACGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* *
33080163 GAATTACCCCCACAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGA-C
* *
33080190 GAATTACCCCCACAGGGTAAAATGAC
1 GAAATACCCCCATAGGGTAAAATGAC
* *
33080216 TAAAATA-CCCCATTGGGTAAAATGATC
1 -GAAATACCCCCATAGGGTAAAATGA-C
* * * *
33080243 GAAATATCCCTATTGGGTAAAATAAC
1 GAAATACCCCCATAGGGTAAAATGAC
* * * *
33080269 TTAATTAGCCCAATAGGGTAAAATGAC
1 -GAAATACCCCCATAGGGTAAAATGAC
*
33080296 TACAATACCCCCATTA-GGTAAAATGAC
1 GA-AATACCCCCA-TAGGGTAAAATGAC
* *
33080323 TGAATTACCCCCATAAGGTAAAATGAC
1 -GAAATACCCCCATAGGGTAAAATGAC
*
33080350 AGAAATACCCCCATAGGGTAAAATGATT
1 -GAAATACCCCCATAGGGTAAAATGA-C
33080378 GAAATA-CCCCATAGGGTAAAAT
1 GAAATACCCCCATAGGGTAAAAT
33080400 AACTGTTATA
Statistics
Matches: 314, Mismatches: 47, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
26 44 0.14
27 266 0.85
28 4 0.01
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.21
Consensus pattern (26 bp):
GAAATACCCCCATAGGGTAAAATGAC
Found at i:33080605 original size:26 final size:26
Alignment explanation
Indices: 33080566--33080646 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
33080556 TGAAGGAAGT
* *
33080566 ATACTTTTAGTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* * * *
33080592 ATACTGTTACTGGCAGCTTCGTTGCA
1 ATACTATTACTGGCAGCTTTGCTGCG
*
33080618 ATACTACTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
33080644 ATA
1 ATA
33080647 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:33080790 original size:28 final size:28
Alignment explanation
Indices: 33080756--33080866 Score: 170
Period size: 28 Copynumber: 4.0 Consensus size: 28
33080746 CCGATACTGC
* *
33080756 ATTGGGCTAAGGCCCATAATGTTACTAT
1 ATTGGGCTAAGGCCCACATTGTTACTAT
33080784 ATTGGGCTAAGGCCCACATTGTTACTAT
1 ATTGGGCTAAGGCCCACATTGTTACTAT
* *
33080812 ATTGGGCTAAGGCCCACATTGTTATTGT
1 ATTGGGCTAAGGCCCACATTGTTACTAT
*
33080840 ATTGGGCTAAGGCCCACACTG-TACTAT
1 ATTGGGCTAAGGCCCACATTGTTACTAT
33080867 TTCTGAAAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
27 4 0.05
28 72 0.95
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (28 bp):
ATTGGGCTAAGGCCCACATTGTTACTAT
Found at i:33080885 original size:33 final size:33
Alignment explanation
Indices: 33080843--33080965 Score: 183
Period size: 33 Copynumber: 3.7 Consensus size: 33
33080833 TTATTGTATT
*
33080843 GGGCTAAGGCCCACACTGTACTATTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
*
33080876 GGGCTAAGGCCCACACTTTACTGTTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
*
33080909 GGGCTAAGGCCCACACTTTACTGTTTCTGAAAA
1 GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
* * *
33080942 GGACTTAGGCCCAGACTGTTACTG
1 GGGCTAAGGCCCACACTG-TACTG
33080966 CATGTTGTAT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
33 78 0.94
34 5 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (33 bp):
GGGCTAAGGCCCACACTGTACTGTTTCTGAAAA
Found at i:33098903 original size:29 final size:28
Alignment explanation
Indices: 33098852--33099157 Score: 308
Period size: 29 Copynumber: 10.6 Consensus size: 28
33098842 GACTATCGAC
33098852 TATGAAAA-GGATGGTGACGACCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
***
33098879 CTATGAAAAGGGATGGTGGTAACCATCGAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* *** * *
33098909 TATGAAAAGGGATAGTTTTGACTATCGAC
1 TATGAAAAGGGATGGTGACGACCATC-AA
*
33098938 TATGAAAAGGGATGGTGACGACCATAAA
1 TATGAAAAGGGATGGTGACGACCATCAA
* *
33098966 CTATGAAAAGAGAGGGTGACGACCATCAA
1 -TATGAAAAGGGATGGTGACGACCATCAA
*
33098995 CTATGAAAAGGGAGGGTGACGACCATCAA
1 -TATGAAAAGGGATGGTGACGACCATCAA
** *
33099024 TGAATGAAAAGGGATGGTTTCGACCAACGAA
1 T--ATGAAAAGGGATGGTGACGACCATC-AA
33099055 TATGAAAAGGGATGGTGACGACCATCGAA
1 TATGAAAAGGGATGGTGACGACCATC-AA
* *
33099084 TATGTAAAGGGATGGTGACGATCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
* * *
33099112 TTATGAAAATGAATGGTGATGACCATCGAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
*
33099142 AATGAAAAGGGATGGT
1 TATGAAAAGGGATGGT
33099158 TTCGGCCATC
Statistics
Matches: 233, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
28 12 0.05
29 193 0.83
30 25 0.11
31 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.28, T:0.20
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGACCATCAA
Found at i:33099061 original size:146 final size:145
Alignment explanation
Indices: 33098841--33099153 Score: 375
Period size: 146 Copynumber: 2.2 Consensus size: 145
33098831 GGGATAGTTT
* * * *
33098841 CGACTATCGACTATGAAAA-GGATGGTGACGACCATCAACTATGAAAAGGGATGGTGGTAACCAT
1 CGACCATCAACTATGAAAAGGGAGGGTGACGACCATCAACTATGAAAAGGGATGGTGGTAACCAA
*** * *
33098905 CGAATATGAAAAGGGATAGTTTTGACTATCGACTATGAAAAGGGATGGTGACGACCATAAACTAT
66 CGAATATGAAAAGGGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAACTAT
33098970 GAAAA-GAGAGGGTGA
131 GAAAATGA-AGGGTGA
* *
33098985 CGACCATCAACTATGAAAAGGGAGGGTGACGACCATCAA-TGAATGAAAAGGGATGGT-TTCGAC
1 CGACCATCAACTATGAAAAGGGAGGGTGACGACCATCAACT--ATGAAAAGGGATGGTGGT-AAC
* * * * *
33099048 CAACGAATATGAAAAGGGATGGTGACGACCATCGAATATGTAAAGGGATGGTGACGATCATCAAT
63 CAACGAATATGAAAAGGGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAAC
*
33099113 TATGAAAATGAATGGTGA
128 TATGAAAATGAAGGGTGA
* *
33099131 TGACCATCGAA-AATGAAAAGGGA
1 CGACCATC-AACTATGAAAAGGGA
33099154 TGGTTTCGGC
Statistics
Matches: 144, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
144 18 0.12
145 19 0.13
146 103 0.72
147 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (145 bp):
CGACCATCAACTATGAAAAGGGAGGGTGACGACCATCAACTATGAAAAGGGATGGTGGTAACCAA
CGAATATGAAAAGGGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACGACCATAAACTAT
GAAAATGAAGGGTGA
Found at i:33099166 original size:29 final size:29
Alignment explanation
Indices: 33098812--33099168 Score: 298
Period size: 29 Copynumber: 12.3 Consensus size: 29
33098802 ACGTATAGAT
* * * *
33098812 GACCATCGATTAATGGAAAGGGATAGTTTC
1 GACCATCGAAT-ATGAAAAGGGATGGTGTC
* * *
33098842 GACTATCGACTATGAAAA-GGATGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGTC
33098870 GACCATC-AACTATGAAAAGGGATGGTGGT-
1 GACCATCGAA-TATGAAAAGGGATGGT-GTC
* * * *
33098899 AACCATCGAATATGAAAAGGGATAGTTTT
1 GACCATCGAATATGAAAAGGGATGGTGTC
* * *
33098928 GACTATCGACTATGAAAAGGGATGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGTC
* * * *
33098957 GACCAT-AAACTATGAAAAGAGAGGGTGAC
1 GACCATCGAA-TATGAAAAGGGATGGTGTC
* *
33098986 GACCATC-AACTATGAAAAGGGAGGGTGAC
1 GACCATCGAA-TATGAAAAGGGATGGTGTC
*
33099015 GACCATC-AATGAATGAAAAGGGATGGTTTC
1 GACCATCGAAT--ATGAAAAGGGATGGTGTC
* *
33099045 GACCAACGAATATGAAAAGGGATGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGTC
* *
33099074 GACCATCGAATATGTAAAGGGATGGTGAC
1 GACCATCGAATATGAAAAGGGATGGTGTC
* * *
33099103 GATCATC-AATTATGAAAATGAATGGTGAT-
1 GACCATCGAA-TATGAAAAGGGATGGTG-TC
* *
33099132 GACCATCGAAAATGAAAAGGGATGGTTTC
1 GACCATCGAATATGAAAAGGGATGGTGTC
*
33099161 GGCCATCG
1 GACCATCG
33099169 TTTAGAACAC
Statistics
Matches: 269, Mismatches: 44, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.00
28 27 0.10
29 203 0.75
30 35 0.13
31 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.21
Consensus pattern (29 bp):
GACCATCGAATATGAAAAGGGATGGTGTC
Found at i:33099168 original size:87 final size:89
Alignment explanation
Indices: 33098968--33099157 Score: 244
Period size: 88 Copynumber: 2.2 Consensus size: 89
33098958 ACCATAAACT
* *
33098968 ATGAAAAGAGAGGGTGACGACCATC-AACTATGAAAAGGGAGGGTGACGACCATCAATGAATGAA
1 ATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGAGGGTGACGACCATCAATGAATGAA
* * *
33099032 AAGGGATGGTTTCGACCAACGAAT
66 AAGGAATGGTATCGACCAACGAAA
* * * *
33099056 ATGAAAAGGGATGGTGACGACCATCGAA-TATGTAAAGGGATGGTGACGATCATCAAT-TATGAA
1 ATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGAGGGTGACGACCATCAATGAATGAA
* *
33099119 AATGAATGGTGAT-GACCATCGAAA
66 AAGGAATGGT-ATCGACCAACGAAA
33099143 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
33099158 TTCGGCCATC
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 37 0.42
88 50 0.56
89 2 0.02
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.19
Consensus pattern (89 bp):
ATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGGAGGGTGACGACCATCAATGAATGAA
AAGGAATGGTATCGACCAACGAAA
Found at i:33105228 original size:33 final size:33
Alignment explanation
Indices: 33105186--33105252 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
33105176 TTAATATTTT
33105186 AATGTCTACAGCATGTTAATAATCTAGTATAAA
1 AATGTCTACAGCATGTTAATAATCTAGTATAAA
*
33105219 AATGTCTACAGCATGTTAGTAATCTAGTATAAA
1 AATGTCTACAGCATGTTAATAATCTAGTATAAA
33105252 A
1 A
33105253 TGACTAGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (33 bp):
AATGTCTACAGCATGTTAATAATCTAGTATAAA
Found at i:33105656 original size:26 final size:26
Alignment explanation
Indices: 33105620--33105673 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
33105610 TCATTGTAGC
33105620 TTAATCTAGCTAGCCCAGGGACTAAT
1 TTAATCTAGCTAGCCCAGGGACTAAT
33105646 TTAATCTAGCTAGCCCAGGGACTAAT
1 TTAATCTAGCTAGCCCAGGGACTAAT
33105672 TT
1 TT
33105674 GCAAAACTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
TTAATCTAGCTAGCCCAGGGACTAAT
Found at i:33106329 original size:30 final size:29
Alignment explanation
Indices: 33106254--33106481 Score: 233
Period size: 29 Copynumber: 7.8 Consensus size: 29
33106244 CGTATCGATT
* * * **
33106254 ACCATCGATTAATGAAATGGGATAGTTTCG
1 ACCATCGAAT-ATGAAAAGGGATGGTGACG
* * *
33106284 ACTATCGACTATGAAAAGGGATGGTGATG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
33106313 ACCATC-AACTGGTGAAAAGGAATGGTGACG
1 ACCATCGAA-T-ATGAAAAGGGATGGTGACG
* *
33106343 ACCATCGATTAATGAAAAGGGATGGTGGCG
1 ACCATCGAAT-ATGAAAAGGGATGGTGACG
*
33106373 ACCATCGAATATGAAAAGGGATGGTGATG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
33106402 ACCTTCGAATATGATAAGGGATGGTGACG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* * *
33106431 ACCATCAAACATGAAAAGGGATGATGACG
1 ACCATCGAATATGAAAAGGGATGGTGACG
* *
33106460 ACCATCGAAAATGAAAAAGGAT
1 ACCATCGAATATGAAAAGGGAT
33106482 TGTTTCGACC
Statistics
Matches: 164, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
28 1 0.01
29 106 0.65
30 56 0.34
31 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (29 bp):
ACCATCGAATATGAAAAGGGATGGTGACG
Found at i:33116935 original size:27 final size:27
Alignment explanation
Indices: 33116786--33116925 Score: 187
Period size: 27 Copynumber: 5.3 Consensus size: 27
33116776 AGAGGTCGGT
33116786 AAATGACCGAAATACCC-CATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
33116812 AAATGACCGAAATACCCT-ATAAGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
33116838 GAATGACCGAAATACACC-CATAGGGTA
1 AAATGACCGAAATAC-CCTCATAGGGTA
* * * *
33116865 AAATGATCGAAATATCCTTATGGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
33116892 AAATGACCGAATTACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
33116919 AAATGAC
1 AAATGAC
33116926 TATTATACCC
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
26 40 0.41
27 57 0.59
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCATAGGGTA
Found at i:33117338 original size:33 final size:33
Alignment explanation
Indices: 33117265--33117369 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
33117255 TGCATTATTG
* *
33117265 CACTGTACCGATACTGTATTGGGCTAAGG-CC-
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
* *
33117296 CA---TATTGTTACCGTATTGGGCTAAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
* * *
33117326 CACTGTACTGTTACTGAATAGGGCTCAGGCCCA
1 CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
*
33117359 GACTGTCACTG
1 CACTGT-ACTG
33117370 CTCGTTGTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
28 20 0.34
29 2 0.03
30 2 0.03
31 2 0.03
33 28 0.48
34 4 0.07
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.27
Consensus pattern (33 bp):
CACTGTACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:33120670 original size:40 final size:40
Alignment explanation
Indices: 33120433--33120656 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
33120423 TTGAATGATG
* * * * *
33120433 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
33120473 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33120512 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33120551 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACGAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33120591 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
33120632 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
33120657 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
38 24 0.14
39 23 0.14
40 110 0.66
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33152544 original size:12 final size:13
Alignment explanation
Indices: 33152527--33152558 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
33152517 TGAAAATAGA
33152527 ATATGAAAC-GTT
1 ATATGAAACGGTT
33152539 ATATG-AACGGTT
1 ATATGAAACGGTT
33152551 ATATGAAA
1 ATATGAAA
33152559 TAGATATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 13 0.72
13 2 0.11
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (13 bp):
ATATGAAACGGTT
Found at i:33154149 original size:39 final size:37
Alignment explanation
Indices: 33154093--33154214 Score: 138
Period size: 40 Copynumber: 3.1 Consensus size: 37
33154083 CACAAACTTA
33154093 CCGGATTAGTACTCGCACAAATGCCTTCGGGCTTAGC
1 CCGGATTAGTACTCGCACAAATGCCTTCGGGCTTAGC
* *
33154130 CCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGT
1 CCGG-ATTAGTA-CTCGCACAAATGCCTTCGG-GCTTAGC
* *
33154170 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGAT-TAGT-AC-TCGCACAAATGCCTTCGGG-CTTAGC
33154210 CCGGA
1 CCGGA
33154215 CATCATTCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
37 4 0.06
38 7 0.10
39 21 0.29
40 31 0.43
41 9 0.12
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (37 bp):
CCGGATTAGTACTCGCACAAATGCCTTCGGGCTTAGC
Found at i:33162005 original size:40 final size:40
Alignment explanation
Indices: 33161968--33162129 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 40
33161958 GCTACTCGTT
*
33161968 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
33162008 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
33162048 CAAATGCCTTCGGG-C-TTA-CC-GA-TTAGT-ACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
33162082 C-AA-GCCTTC-GG-C-TTAGCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
33162117 CAAATGCCTTCGG
1 CAAATGCCTTCGG
33162130 ATCTTAGTCC
Statistics
Matches: 108, Mismatches: 6, Indels: 18
0.82 0.05 0.14
Matches are distributed among these distances:
31 6 0.06
32 8 0.07
33 4 0.04
34 13 0.12
35 12 0.11
36 4 0.04
37 8 0.07
38 3 0.03
39 1 0.01
40 47 0.44
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:33169367 original size:39 final size:39
Alignment explanation
Indices: 33169314--33169456 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
33169304 ATATCCATAA
* *
33169314 ATATGA-TATTGTGATCTATGCTTAAATTTTATGTGATT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
*
33169352 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGGTT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
*
33169391 ATATGAGTATTGTGATATATACTTAAATGTTATGTGATT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
* **
33169430 ATATGTGTAAGGTGATATATGCTTAAA
1 ATATGAGTATTGTGATATATGCTTAAA
33169457 AGTGAATATG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 6 0.06
39 89 0.94
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.45
Consensus pattern (39 bp):
ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
Done.