Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 111 of 196
Found at i:33581601 original size:19 final size:18
Alignment explanation
Indices: 33581559--33581601 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
33581549 AACGAGCTTG
33581559 TTTTTTAGTATTTTTATA
1 TTTTTTAGTATTTTTATA
33581577 TGTTTTTAGTTCATTTTT-TA
1 T-TTTTTAG-T-ATTTTTATA
33581597 TTTTT
1 TTTTT
33581602 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 4 0.18
21 6 0.27
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTTTTAGTATTTTTATA
Found at i:33583447 original size:20 final size:20
Alignment explanation
Indices: 33583422--33583480 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
33583412 TTGTACGGGT
33583422 TTGCACTTCGGTGCCTCTT-A
1 TTGCACTTCGGTGCCT-TTGA
*
33583442 TTGCACTTTGGTGCCTTTGA
1 TTGCACTTCGGTGCCTTTGA
* *
33583462 TTGCAATTCTGTGCCTTTG
1 TTGCACTTCGGTGCCTTTG
33583481 CTAGCATTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTTTGA
Found at i:33586069 original size:16 final size:16
Alignment explanation
Indices: 33586048--33586078 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33586038 GTTAATTGGT
*
33586048 TAATTTTTAGTTTAAA
1 TAATTTTTAGGTTAAA
33586064 TAATTTTTAGGTTAA
1 TAATTTTTAGGTTAA
33586079 TTTAATTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (16 bp):
TAATTTTTAGGTTAAA
Found at i:33586084 original size:17 final size:16
Alignment explanation
Indices: 33586047--33586085 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33586037 TGTTAATTGG
*
33586047 TTAATTTTTAGTTTAA
1 TTAATTTTTAGGTTAA
*
33586063 ATAATTTTTAGGTTAA
1 TTAATTTTTAGGTTAA
33586079 TTTAATT
1 -TTAATT
33586086 CATTGATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAGGTTAA
Found at i:33590734 original size:18 final size:18
Alignment explanation
Indices: 33590698--33590734 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33590688 CTTCTTAAGA
*
33590698 TGAACAATGTCCTCTTTG
1 TGAACAATGTCCTCATTG
*
33590716 TGAACAATGTTCTCATTG
1 TGAACAATGTCCTCATTG
33590734 T
1 T
33590735 AAAAAGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (18 bp):
TGAACAATGTCCTCATTG
Found at i:33596684 original size:19 final size:19
Alignment explanation
Indices: 33596660--33596697 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33596650 GGCCCATTTC
33596660 ATTCTCCAAATTCCTTAGA
1 ATTCTCCAAATTCCTTAGA
33596679 ATTCTCCAAATTCCTTAGA
1 ATTCTCCAAATTCCTTAGA
33596698 GTTGCGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (19 bp):
ATTCTCCAAATTCCTTAGA
Found at i:33602550 original size:26 final size:26
Alignment explanation
Indices: 33602521--33602580 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
33602511 GAAAAGTTGT
*
33602521 TAAATGACCGTAATGCCCCT-AGAGGG
1 TAAATGACCATAATGCCCCTCA-AGGG
* **
33602547 TAAATGACTATTTTGCCCCTCAAGGG
1 TAAATGACCATAATGCCCCTCAAGGG
33602573 TAAATGAC
1 TAAATGAC
33602581 TGATTTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAAATGACCATAATGCCCCTCAAGGG
Found at i:33602581 original size:26 final size:27
Alignment explanation
Indices: 33602534--33602586 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
33602524 ATGACCGTAA
33602534 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
33602560 TGCCCCTCA-AGGGTAAATGACTGATTT
1 TGCCCCT-AGAGGGTAAATGACTGATTT
33602587 GTGCTATGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGACTGATTT
Found at i:33603887 original size:6 final size:6
Alignment explanation
Indices: 33603859--33603898 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
33603849 TATTTAACCC
*
33603859 AAATT- AAATT- AAATT- AGATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA A
33603899 TTATGTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 14 0.44
6 18 0.56
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (6 bp):
AAATTA
Found at i:33620636 original size:47 final size:47
Alignment explanation
Indices: 33620570--33621040 Score: 743
Period size: 47 Copynumber: 10.1 Consensus size: 47
33620560 GAAATGATAG
*
33620570 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
33620617 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
33620664 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
33620711 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33620758 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33620805 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33620851 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
33620897 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33620944 TAAGGCCTAA-ATGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATA-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
33620990 CAGGGCCGAGTGGCCAACGTGATGCATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33621037 TAAG
1 TAAG
33621041 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 129 0.32
47 270 0.68
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:33621215 original size:37 final size:37
Alignment explanation
Indices: 33621159--33621237 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33621149 CCGAGCTCTA
* * *
33621159 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
33621196 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33621233 AAGAC
1 AAGAC
33621238 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33623870 original size:14 final size:14
Alignment explanation
Indices: 33623851--33623877 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33623841 TAAGTTTCCT
33623851 TTCTTCTATTTTTC
1 TTCTTCTATTTTTC
33623865 TTCTTCTATTTTT
1 TTCTTCTATTTTT
33623878 GATTTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTCTATTTTTC
Found at i:33646961 original size:20 final size:20
Alignment explanation
Indices: 33646936--33647006 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
33646926 GGCAGCTTGA
33646936 CCACAATACTGGTGGTTTGT
1 CCACAATACTGGTGGTTTGT
* *
33646956 CCACAATTCTGGTAGTTTGT
1 CCACAATACTGGTGGTTTGT
** * *
33646976 CTGCAATAACTGGAGGCTTGT
1 CCACAAT-ACTGGTGGTTTGT
*
33646997 CCATAATACT
1 CCACAATACT
33647007 AGCAGTTTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 26 0.67
21 13 0.33
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (20 bp):
CCACAATACTGGTGGTTTGT
Found at i:33646998 original size:41 final size:40
Alignment explanation
Indices: 33646939--33647043 Score: 120
Period size: 41 Copynumber: 2.6 Consensus size: 40
33646929 AGCTTGACCA
* * * * *
33646939 CAATACTGGTGGTTTGTCCACAATTCTGGTAGTTTGTCTG
1 CAATACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
* *
33646979 CAATAACTGGAGGCTTGTCCATAATACTAGCAGTTTATCTG
1 CAAT-ACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
*
33647020 CAATTACTTGTGGCTTGTCCACAA
1 CAA-TACTGGTGGCTTGTCCACAA
33647044 CTTGTTTGTT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 4 0.08
41 48 0.91
42 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (40 bp):
CAATACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
Found at i:33647975 original size:22 final size:22
Alignment explanation
Indices: 33647933--33647975 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
33647923 TAGGATTTAT
* *
33647933 AGTTTAGTTCTATTTTCTTTTC
1 AGTTTAGTCCTATTTTATTTTC
33647955 AGTTTAGTCCT-TTTGTATTTT
1 AGTTTAGTCCTATTT-TATTTT
33647976 TGTTACTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.63
Consensus pattern (22 bp):
AGTTTAGTCCTATTTTATTTTC
Found at i:33650432 original size:29 final size:28
Alignment explanation
Indices: 33650396--33650473 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
33650386 TCATGAGATT
33650396 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
33650426 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
33650453 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
33650474 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:33650747 original size:173 final size:174
Alignment explanation
Indices: 33650426--33650752 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
33650416 AAATTGTACA
* *
33650426 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
33650491 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
33650556 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
33650600 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
33650665 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
33650729 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
33650753 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:33655835 original size:29 final size:28
Alignment explanation
Indices: 33655799--33655876 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
33655789 TCATGAGATT
33655799 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
33655829 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
33655856 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
33655877 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:33656150 original size:173 final size:174
Alignment explanation
Indices: 33655829--33656155 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
33655819 AAATTGTACA
* *
33655829 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
33655894 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
33655959 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
33656003 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
33656068 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
33656132 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
33656156 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:33657464 original size:5 final size:5
Alignment explanation
Indices: 33657454--33657479 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33657444 ATAGATACCA
33657454 AATTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AATTT AATTT A
33657480 TTAATTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:33658929 original size:26 final size:25
Alignment explanation
Indices: 33658890--33658948 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 25
33658880 AAAAATAACA
33658890 TTTCCTTTGAACACTTACCATTTCG
1 TTTCCTTTGAACACTTACCATTTCG
*
33658915 TTTCCTTCTGAACACTTACCATTTTG
1 TTTCCTT-TGAACACTTACCATTTCG
33658941 TTTCCTTT
1 TTTCCTTT
33658949 TCATACCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 8 0.25
26 24 0.75
ACGTcount: A:0.17, C:0.27, G:0.07, T:0.49
Consensus pattern (25 bp):
TTTCCTTTGAACACTTACCATTTCG
Found at i:33664143 original size:53 final size:53
Alignment explanation
Indices: 33664048--33664149 Score: 123
Period size: 53 Copynumber: 1.9 Consensus size: 53
33664038 CATGGAATAG
* **** *
33664048 CACATGGCCTGCGACATGGCCATGTGTTGTAAGTCAGAGAGTTACACAGTCTA
1 CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAGTCTA
* * *
33664101 CACATGGCCTACGACATGGCCGTGTGACCCAACTCAGTGAGTTATACAG
1 CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAG
33664150 CTAGAGATAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 40 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (53 bp):
CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAGTCTA
Found at i:33669525 original size:19 final size:21
Alignment explanation
Indices: 33669500--33669545 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
33669490 TTAAATTTTA
33669500 ATTTTTGG-ATGTT-TTTATTT
1 ATTTTTGGAAT-TTGTTTATTT
33669520 -TTTTTGGAATTTGTTTATTT
1 ATTTTTGGAATTTGTTTATTT
33669540 ATTTTT
1 ATTTTT
33669546 TGCTTTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.39
20 9 0.39
21 5 0.22
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (21 bp):
ATTTTTGGAATTTGTTTATTT
Found at i:33671335 original size:25 final size:25
Alignment explanation
Indices: 33671299--33671378 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
33671289 ATGTACATGC
*
33671299 ATGCTCATACGAGCTATGAATCGGT
1 ATGCTCATACGAGCTATAAATCGGT
*
33671324 ATGCTC-TCACGAGCTATAAATTGGT
1 ATGCTCAT-ACGAGCTATAAATCGGT
* * *
33671349 AAGCTCATATGAGCTA-AAATTGGT
1 ATGCTCATACGAGCTATAAATCGGT
*
33671373 AAGCTC
1 ATGCTC
33671379 TCAATAGTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
24 15 0.31
25 33 0.67
26 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
ATGCTCATACGAGCTATAAATCGGT
Found at i:33671373 original size:24 final size:24
Alignment explanation
Indices: 33671334--33671411 Score: 97
Period size: 24 Copynumber: 3.2 Consensus size: 24
33671324 ATGCTCTCAC
33671334 GAGCTATAAATTGGTAAGCTCATAT
1 GAGCTA-AAATTGGTAAGCTCATAT
33671359 GAGCTAAAATTGGTAAGCTC-TCAAT
1 GAGCTAAAATTGGTAAGCTCAT--AT
* *
33671384 -AGTTGAAATTGGTAAGCTCATAT
1 GAGCTAAAATTGGTAAGCTCATAT
33671407 GAGCT
1 GAGCT
33671412 GTGGTGTACC
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 3 0.07
24 34 0.74
25 9 0.20
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (24 bp):
GAGCTAAAATTGGTAAGCTCATAT
Found at i:33672566 original size:27 final size:26
Alignment explanation
Indices: 33672536--33672600 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
33672526 ATATATAATT
33672536 ATTATATAATAATTAAATTTTACTTAA
1 ATTATATAATAATTAAATTTTACTT-A
* * *
33672563 ATTAT-TAACATGTTTAATTTTACTTA
1 ATTATATAATA-ATTAAATTTTACTTA
*
33672589 ATTTTATAATAA
1 ATTATATAATAA
33672601 ATTTAGATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (26 bp):
ATTATATAATAATTAAATTTTACTTA
Found at i:33677340 original size:89 final size:89
Alignment explanation
Indices: 33677189--33677362 Score: 303
Period size: 89 Copynumber: 2.0 Consensus size: 89
33677179 TCTCAAGGTG
*
33677189 AGACTATTACTATTTCCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCATTGGAAGATC
1 AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAGTAGCATTGGAAGATC
*
33677254 AACACAATACAACATTCACCCCTT
66 AACACAAGACAACATTCACCCCTT
* * *
33677278 AGACTATTACTATTTTCTCAATGGATACTCGGGGTATAATCAGATTACATTAGGATTGGAAGATC
1 AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAGTAGCATTGGAAGATC
33677343 AACACAAGACAACATTCACC
66 AACACAAGACAACATTCACC
33677363 TGCCCATACG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 80 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (89 bp):
AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAGTAGCATTGGAAGATC
AACACAAGACAACATTCACCCCTT
Found at i:33680049 original size:16 final size:15
Alignment explanation
Indices: 33680022--33680055 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
33680012 ATAACTAGTA
*
33680022 TATAATTATATTTAT
1 TATAATTATATTAAT
33680037 TATAATATATATTAAT
1 TATAAT-TATATTAAT
33680053 TAT
1 TAT
33680056 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:33686161 original size:119 final size:120
Alignment explanation
Indices: 33685979--33686201 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
33685969 TCCTCGTTCA
*
33685979 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * * *
33686044 TTTGTAAC-TCGCACCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATGGTAACTTAGCA-CAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
33686099 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
33686161 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATGGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
33686202 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 69 0.78
120 16 0.18
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:33686201 original size:40 final size:40
Alignment explanation
Indices: 33685977--33686201 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
33685967 GCTCCTCGTT
* *
33685977 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
33686017 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
33686057 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33686097 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
33686136 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
33686177 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33686202 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:33694015 original size:79 final size:80
Alignment explanation
Indices: 33693912--33694134 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
33693902 GCTCCTCGTT
* *
33693912 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
33693977 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
*
33693992 C-AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
33694053 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
33694069 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
33694132 GGA
64 GGA
33694135 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
77 27 0.22
78 34 0.27
79 48 0.38
80 16 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:33694134 original size:40 final size:40
Alignment explanation
Indices: 33693912--33694134 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
33693902 GCTCCTCGTT
* *
33693912 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33693952 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33693992 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
33694031 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
33694069 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
33694110 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33694135 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 60 0.37
40 67 0.41
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:33695791 original size:42 final size:42
Alignment explanation
Indices: 33695732--33695815 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
33695722 CACACATTTG
* *
33695732 CTTATTAAAATTTGTTTAATCGGTTGATTTGACATAGAGATA
1 CTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGATA
* *
33695774 CTTATTAAAATTTGTTTAATTAGTTTAATTGACATAGAGATA
1 CTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGATA
33695816 TAGTCAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (42 bp):
CTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGATA
Found at i:33703089 original size:14 final size:14
Alignment explanation
Indices: 33703070--33703099 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33703060 TGTGTGCGTG
*
33703070 TTTTATTTTGTTTC
1 TTTTATCTTGTTTC
33703084 TTTTATCTTGTTTC
1 TTTTATCTTGTTTC
33703098 TT
1 TT
33703100 GAGGACAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.10, G:0.07, T:0.77
Consensus pattern (14 bp):
TTTTATCTTGTTTC
Found at i:33705300 original size:25 final size:23
Alignment explanation
Indices: 33705272--33705318 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
33705262 AACCATTCAT
*
33705272 TCTTCACTTCTCTATCACTTTTCTC
1 TCTTCACTGCTCT-TCA-TTTTCTC
*
33705297 TCTTCAGTGCTCTTCATTTTCT
1 TCTTCACTGCTCTTCATTTTCT
33705319 TCCCCATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.11, C:0.32, G:0.04, T:0.53
Consensus pattern (23 bp):
TCTTCACTGCTCTTCATTTTCTC
Found at i:33709399 original size:79 final size:81
Alignment explanation
Indices: 33709264--33709447 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
33709254 TGAATGATGT
*
33709264 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGATCAAATCCGGACTAAGATCCGAAGGCATTT
*
33709328 GTCCGAGATACTA-ATT
66 GTCCGAGATACTATA-A
* * * **
33709344 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGATC-AAATCCGGACTAAGAT-CCGAAGGCAT
* *
33709405 TTGTGCGAGTTACTATAA
64 TTGTCCGAGATACTATAA
*
33709423 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33709448 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.62
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGATCAAATCCGGACTAAGATCCGAAGGCATTT
GTCCGAGATACTATAA
Found at i:33709454 original size:40 final size:40
Alignment explanation
Indices: 33709263--33709447 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
33709253 TTGAATGATG
* * *
33709263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT-AAA
* * * *
33709303 TCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33709343 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33709382 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33709423 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33709448 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33709469 original size:79 final size:79
Alignment explanation
Indices: 33709316--33709480 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
33709306 GGACTAAGAT
** **
33709316 CCGAAGGCATTTGTCCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33709381 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
33709395 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTCCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33709458 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33709474 CCGAAGG
1 CCGAAGG
33709481 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33713735 original size:50 final size:50
Alignment explanation
Indices: 33713651--33713943 Score: 415
Period size: 50 Copynumber: 5.8 Consensus size: 50
33713641 ATTTGGGTAA
* * *
33713651 AGAGGTCCCATGTAATACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
* *
33713701 AGAGGTCCCATGTAAGACCATGTCTAGGATATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
33713751 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
* *
33713801 AGAGGTCTCATGTAAGACCATGTCTAGGACATGGCGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
** * * * * *
33713851 AGAGGTCCCCCGTAAGACCATGCCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
** * *
33713901 AGAACATCCCATGTAAGACCATGTCTAAGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCA
33713944 TGTTATTATC
Statistics
Matches: 217, Mismatches: 25, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
50 186 0.86
51 31 0.14
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
Found at i:33723977 original size:22 final size:23
Alignment explanation
Indices: 33723943--33723987 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
33723933 CAACCAAACA
33723943 TCCAACTAAACA-TCATTATAAG
1 TCCAACTAAACAGTCATTATAAG
* *
33723965 TCCACCTATACATGTCATTATAA
1 TCCAACTAAACA-GTCATTATAA
33723988 CCTTGGCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
24 9 0.47
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.31
Consensus pattern (23 bp):
TCCAACTAAACAGTCATTATAAG
Found at i:33726625 original size:40 final size:40
Alignment explanation
Indices: 33726449--33726671 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
33726439 TCCTCGTTCA
* * * * *
33726449 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33726488 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33726528 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33726568 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
33726608 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
33726648 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33726672 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33732484 original size:20 final size:21
Alignment explanation
Indices: 33732442--33732484 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
33732432 GAATCTTTCC
**
33732442 TCCCTTTTCTTCTTTCTCCTT
1 TCCCTTTTCTTCTCCCTCCTT
*
33732463 TCCCTTTT-TTCTCCCTCTTT
1 TCCCTTTTCTTCTCCCTCCTT
33732483 TC
1 TC
33732485 ACTCCTTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (21 bp):
TCCCTTTTCTTCTCCCTCCTT
Found at i:33735202 original size:50 final size:50
Alignment explanation
Indices: 33735134--33735271 Score: 159
Period size: 50 Copynumber: 2.8 Consensus size: 50
33735124 ACTGCCAATC
* * ** * * **
33735134 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACA
** *
33735184 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTACCAACA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACA
* *
33735234 CCATGTCCCAGACATGGTCCTACATAGGACCTCTCATA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
33735272 ATCTCAATGA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACA
Found at i:33737365 original size:6 final size:6
Alignment explanation
Indices: 33737354--33737420 Score: 134
Period size: 6 Copynumber: 11.2 Consensus size: 6
33737344 CATTTTTAAG
33737354 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
33737402 TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT T
33737421 GGAGAAAACC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (6 bp):
TCATTT
Found at i:33740819 original size:38 final size:39
Alignment explanation
Indices: 33740762--33740837 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
33740752 CCAACCCAAT
*
33740762 CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTAC
1 CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTAC
*
33740801 CCAATTA-CCAACCTAATAAAAATAAAACTAAAGTCTA
1 CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTA
33740838 ACTCTTAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.80
39 7 0.20
ACGTcount: A:0.51, C:0.26, G:0.03, T:0.20
Consensus pattern (39 bp):
CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTAC
Found at i:33741026 original size:37 final size:37
Alignment explanation
Indices: 33740970--33741044 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
33740960 TGTTAATTTC
* *
33740970 AAGAATTATATAATGTTTTTAATTATGTAGTGGTTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
* *
33741007 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
33741044 A
1 A
33741045 TTCGAGTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
Found at i:33741062 original size:9 final size:9
Alignment explanation
Indices: 33741043--33741091 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
33741033 GTAGTGATTC
*
33741043 AATTCGAGT
1 AATTCGGGT
*
33741052 AATTCAGGT
1 AATTCGGGT
33741061 AATTCGGGT
1 AATTCGGGT
33741070 AATTCGGGT
1 AATTCGGGT
*
33741079 AATTCGGTT
1 AATTCGGGT
33741088 AATT
1 AATT
33741092 TCGATTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (9 bp):
AATTCGGGT
Found at i:33741222 original size:28 final size:28
Alignment explanation
Indices: 33741164--33741222 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
33741154 TAATTAACCG
* * *** *
33741164 AAAAAATTTCGGTTCGGTTAATTTTTTA
1 AAAAAAATTCGGTTCAGTTAACGGTTAA
33741192 AAAAAAATTCGGTTCAGTTAACGGTTAA
1 AAAAAAATTCGGTTCAGTTAACGGTTAA
33741220 AAA
1 AAA
33741223 TTTTGGAAGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (28 bp):
AAAAAAATTCGGTTCAGTTAACGGTTAA
Found at i:33750180 original size:3 final size:3
Alignment explanation
Indices: 33750167--33750197 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
33750157 GAATATGAGC
*
33750167 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
33750198 TAAAGGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:33756233 original size:20 final size:20
Alignment explanation
Indices: 33756209--33756246 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33756199 TACGCACGTT
*
33756209 GTGTGTG-G-GGGCTACTGG
1 GTGTGTGCGTGGGGTACTGG
33756227 GTGTGTGCGTGGGGTACTGG
1 GTGTGTGCGTGGGGTACTGG
33756247 CCGAATGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 1 0.06
20 9 0.53
ACGTcount: A:0.05, C:0.11, G:0.55, T:0.29
Consensus pattern (20 bp):
GTGTGTGCGTGGGGTACTGG
Found at i:33756742 original size:31 final size:31
Alignment explanation
Indices: 33756684--33756743 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
33756674 GTCTTTTGAA
* *
33756684 AATATTTACAAAAAGAGACATCTAATTTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTTT
*
33756715 AATATTTACAAACAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
33756744 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (31 bp):
AATATTTACAAAAAGAGACACCAAATTTTTT
Found at i:33768131 original size:40 final size:40
Alignment explanation
Indices: 33768028--33768137 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
33768018 CTTTACTAGA
* * * *
33768028 ATTAGCGGCGGTTTTTAAAAAACGCTGC-AATAGATTGAGC
1 ATTAGCGGCGCTTTTT-GAAAACGCCGCTAATAGATCGAGC
* *
33768068 ATTAGCAGCGCTTGTTGAGAAACGCCGCTAA-AGATCGAGC
1 ATTAGCGGCGCTTTTTGA-AAACGCCGCTAATAGATCGAGC
33768108 ATTAGCGGCGCTTTTTGTAAAACGCCGCTA
1 ATTAGCGGCGCTTTTTG-AAAACGCCGCTA
33768138 TAGGTCAAGT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 55 0.93
41 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTTGAAAACGCCGCTAATAGATCGAGC
Found at i:33768352 original size:14 final size:15
Alignment explanation
Indices: 33768335--33768371 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
33768325 ATTGTTTATT
33768335 GTTTAAGGGTT-GGG
1 GTTTAAGGGTTAGGG
33768349 GTTTAAGGGTTAGGG
1 GTTTAAGGGTTAGGG
33768364 GTTTAAGG
1 GTTTAAGG
33768372 TTTATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (15 bp):
GTTTAAGGGTTAGGG
Found at i:33768546 original size:21 final size:21
Alignment explanation
Indices: 33768499--33768573 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 21
33768489 ATACATGTTA
* * * *
33768499 GGGGTTTAGGGATTATGGTTT
1 GGGGTTTAAGGTTTAAGGGTT
*
33768520 GTGGTTTAAGGTTTAAGGGTT
1 GGGGTTTAAGGTTTAAGGGTT
33768541 GGGGTTTAAGGTTT-AGGTGTT
1 GGGGTTTAAGGTTTAAGG-GTT
*
33768562 AGGGGTTAAAGG
1 -GGGGTTTAAGG
33768574 ATAGGGGTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
20 3 0.07
21 32 0.71
22 10 0.22
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.39
Consensus pattern (21 bp):
GGGGTTTAAGGTTTAAGGGTT
Found at i:33768668 original size:28 final size:29
Alignment explanation
Indices: 33768621--33768683 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
33768611 CAGTGTTTAG
33768621 GGGTTAGGGGTTTACAGTTTACGGT-TCAA
1 GGGTTAGGGGTTTACAGTTTA-GGTGTCAA
*
33768650 GGGTT-GGGGTTTA-AGGTTTAGGTGTTAA
1 GGGTTAGGGGTTTACA-GTTTAGGTGTCAA
33768678 GGGTTA
1 GGGTTA
33768684 ATGGATAGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
27 4 0.13
28 21 0.70
29 5 0.17
ACGTcount: A:0.19, C:0.05, G:0.40, T:0.37
Consensus pattern (29 bp):
GGGTTAGGGGTTTACAGTTTAGGTGTCAA
Found at i:33769042 original size:125 final size:125
Alignment explanation
Indices: 33768824--33769089 Score: 306
Period size: 125 Copynumber: 2.1 Consensus size: 125
33768814 CGTTTGGACA
* * * * *
33768824 AAAAACGCTGCAAAAGGTAGGCAATAGCGGTGTTTGGACTGAAAACGTCGCAACAGTGTTTTAAA
1 AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGGACTGAAAACGTCGCAACAATGTATTAAA
* * ** * *
33768889 AATTGTTCAAAACGACTCTGTTTTGTTACAG-GAATTTAATTTTTTAGTGGCGTTTTT-CT
66 AATTGTACAAAACGACGCAATTTCGTTACAGAGAA-TTAATTTTTTAATGGCGTTTTTGCT
** *
33768948 CAAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTT-GTTTGAAAATG-CTGCAACAATGTATTA
1 -AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGGACTGAAAACGTC-GCAACAATGTATTA
* *
33769011 AAAATTGTACAAAAATGGCGCAATTTCGTTACAGAGAATTAATTTTTTAATGGCGTTTTTGCT
64 AAAATTGTAC-AAAACGACGCAATTTCGTTACAGAGAATTAATTTTTTAATGGCGTTTTTGCT
* *
33769074 GAAAACGCCGTAAAAG
1 AAAAACGCCGCAAAAG
33769090 TTTACAATTA
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
123 1 0.01
124 29 0.24
125 84 0.71
126 5 0.04
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (125 bp):
AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGGACTGAAAACGTCGCAACAATGTATTAAA
AATTGTACAAAACGACGCAATTTCGTTACAGAGAATTAATTTTTTAATGGCGTTTTTGCT
Found at i:33771034 original size:123 final size:122
Alignment explanation
Indices: 33770800--33771508 Score: 453
Period size: 123 Copynumber: 5.9 Consensus size: 122
33770790 CTTTGAAGAA
* * *
33770800 TTAATATGTAACCTATATTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAGTTTT
1 TTAATATATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
33770865 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
*
33770922 TTAATATATAACCTATAGTAGTATGGATATATAACCTACATTTCAAATTCATTACTAGTAAATTT
1 TTAATATATAACCTATAGTAGTAT-GATATATAACCTACATTTCAAATTCATTACTAATAAATTT
* *
33770987 TTAAATTTATTAAATAATAATTGTAATTATTATA-TTTTAAAT-A-TTAAAACCTCTATTT
65 TTAAA-TT-TTAAA-AATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
* * * * * ** *
33771045 TTAATATATAACCTATATTTCA-AATTCAT-TACTAA--TA-AGTTTTTAAATTTTAAAAATAAT
1 TTAATATATAACCTATA-GT-AGTA-TGATATA-TAACCTACA--TTTCAAA-TTCATTACTAA-
* * * * *
33771105 TATAATTATTATATTTT--AAAT-ATTA-AA--ACCTATATTTTT-AGT-A--TATAACCTATAT
58 TA-AATTTTTAAATTTTAAAAATAATTATAATTA-TTATATTTTTAAATAACTTAAAACCTATAT
33771160 TT
121 TT
** * * * * * * * * *
33771162 CAAAT-TCATTA-CTA-A-TA-AATTATA-ATTA-TTATATTACTAATTATTATATTACTAAT-T
1 TTAATAT-ATAACCTATAGTAGTATGATATATAACCTACATTTC-AA--ATT-CATTACTAATAA
* * * * * * * * *
33771219 ATATTT-AA---TAATATTACTAATAAGTTTTTAAATTTTAAAAATAA-TTATAATTA-TTATAT
61 ATTTTTAAATTTTAAAAATAATTATAA-TTATTATATTTT-TAAATAACTTA-AA--ACCTATAT
33771278 TT
121 TT
* * * * * *
33771280 TTAAATAACTTAAAACCTATA-T-TTTTAATATATAACCTATATTTCAAATTCATTACTAATAAG
1 TT-AAT-A--TATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAA
*
33771343 TTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
62 TTTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
* * * *
33771404 TTAATATATAACCTATATTAGTATGGATATTTAACCTACATTTCAAATTCATCACTAATAAGTTT
1 TTAATATATAACCTATAGTAGTAT-GATATATAACCTACATTTCAAATTCATTACTAATAAATTT
*
33771469 TTAAATTTTAAAAATAATTATAATAATTATA-TTTTAAATA
65 TTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATA
33771509 TTATATCACT
Statistics
Matches: 451, Mismatches: 79, Indels: 114
0.70 0.12 0.18
Matches are distributed among these distances:
106 1 0.00
108 2 0.00
109 3 0.01
110 10 0.02
111 8 0.02
112 14 0.03
113 8 0.02
114 2 0.00
115 2 0.00
116 6 0.01
117 20 0.04
118 14 0.03
119 10 0.02
120 13 0.03
121 5 0.01
122 48 0.11
123 161 0.36
124 35 0.08
125 32 0.07
126 46 0.10
127 11 0.02
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (122 bp):
TTAATATATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
Found at i:33771063 original size:20 final size:21
Alignment explanation
Indices: 33771017--33771069 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
33771007 TTGTAATTAT
33771017 TATATTTTAAATATTAAAACC
1 TATATTTTAAATATTAAAACC
* * *
33771038 TCTATTTTTAATA-TATAACC
1 TATATTTTAAATATTAAAACC
*
33771058 TATATTTCAAAT
1 TATATTTTAAAT
33771070 TCATTACTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTTAAATATTAAAACC
Found at i:33771154 original size:97 final size:100
Alignment explanation
Indices: 33770948--33771182 Score: 395
Period size: 97 Copynumber: 2.4 Consensus size: 100
33770938 AGTAGTATGG
* * *
33770948 ATATATAACCTACATTTCAAATTCATTACTAGTAAATTTTTAAATTTATTAAATAATAATTGTAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
*
33771013 TTATTATATTTTAAATATTAAAACCTCTATTTTTA
66 TTATTATATTTTAAATATTAAAACCTATATTTTTA
*
33771048 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTTTAAA-TT-TTAAA-AATAATTATAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
33771110 TTATTATATTTTAAATATTAAAACCTATATTTTTA
66 TTATTATATTTTAAATATTAAAACCTATATTTTTA
*
33771145 GTATATAACCTATATTTCAAATTCATTACTAATAAATT
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATT
33771183 ATAATTATTA
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
97 80 0.62
98 5 0.04
99 2 0.02
100 41 0.32
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (100 bp):
ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
TTATTATATTTTAAATATTAAAACCTATATTTTTA
Found at i:33771204 original size:15 final size:15
Alignment explanation
Indices: 33771180--33771220 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
33771170 TTACTAATAA
33771180 ATTA-TAATTATTAT
1 ATTACTAATTATTAT
33771194 ATTACTAATTATTAT
1 ATTACTAATTATTAT
33771209 ATTACTAATTAT
1 ATTACTAATTAT
33771221 ATTTAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTACTAATTATTAT
Found at i:33771219 original size:12 final size:12
Alignment explanation
Indices: 33771189--33771239 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
33771179 AATTATAATT
33771189 ATTATATTACTAA
1 ATTATATTACT-A
33771202 TTATTATATTACTA
1 --ATTATATTACTA
33771216 ATTATATT--TA
1 ATTATATTACTA
*
33771226 ATAATATTACTA
1 ATTATATTACTA
33771238 AT
1 AT
33771240 AAGTTTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.27
12 12 0.36
14 1 0.03
15 11 0.33
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (12 bp):
ATTATATTACTA
Found at i:33771230 original size:223 final size:221
Alignment explanation
Indices: 33770825--33771511 Score: 582
Period size: 259 Copynumber: 2.9 Consensus size: 221
33770815 TATTAGTATG
33770825 ATATATAACCTACATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
1 ATATATAACCTACATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
* *
33770890 TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATAGTAGTATGGATATATA
66 TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATAGTAGAATGCATATATA
* *
33770955 ACCTACATTTCAAATTCATTACTAGTAAATTTTTAAATTTATTAAATAATAATTGTAATTATTAT
131 A-CTAAATTT-AAATTCATTACTAGTAAATTATTAAATTTATTAAATAATAATTGTAATTATTAT
33771020 ATTTTAAATATTAAAACCTCTATTTTTA
194 ATTTTAAATATTAAAACCTCTATTTTTA
*
33771048 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
1 ATATATAACCTACATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
* * *
33771113 TTATA-TTTTAAAT-A-TTAAAACCTATATTTTTAGTATATAACCTATATTTCA-AATTCAT-TA
66 TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATA-GT-AGAATGCATATA
* * * * *
33771173 CTAA-TAAATTATAATTATTATATTACTAATTATTATATTACTAATTATATTTAATAATATTACT
129 -TAACTAAATT-TAA--ATT-CATTACTAGTAAAT-TATTA--AATT-TATTAAATAATA--A-T
** * * ** *
33771237 AATAAGTTTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATAT
182 TGTAA-TTATTATATTTT--AAAT-A-T-T-A--A--A-A--CCTC-------T---A--T----
33771302 TTTTA
217 TTTTA
* *
33771307 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTA
1 ATATATAACCTACATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
* * * *
33771372 TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATATTAGTATGGATATTTA
66 TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATAGTAGAATGCATATATA
* * * * * * *
33771437 ACCTACATTTCAAATTCATCACTAATAAGTTTTTAAA-TT-TTAAA-AATAATTATAATAATTAT
131 A-CTAAATTT-AAATTCATTACTAGTAAATTATTAAATTTATTAAATAATAATTGTAATTATTAT
33771499 ATTTTAAATATTA
194 ATTTTAAATATTA
33771512 TATCACTCAA
Statistics
Matches: 375, Mismatches: 37, Indels: 84
0.76 0.07 0.17
Matches are distributed among these distances:
219 7 0.02
220 34 0.09
221 12 0.03
222 19 0.05
223 73 0.19
225 4 0.01
226 11 0.03
228 1 0.00
229 4 0.01
230 10 0.03
232 4 0.01
233 1 0.00
234 1 0.00
235 1 0.00
236 1 0.00
238 1 0.00
240 1 0.00
241 1 0.00
243 2 0.01
244 1 0.00
245 1 0.00
246 1 0.00
247 4 0.01
249 9 0.02
250 6 0.02
251 1 0.00
253 5 0.01
254 4 0.01
255 2 0.01
256 1 0.00
257 2 0.01
259 78 0.21
260 19 0.05
261 13 0.03
262 33 0.09
263 7 0.02
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (221 bp):
ATATATAACCTACATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
TTATATTTTTAAATAACTTAAAACCTATATTTTTAATATATAACCTATAGTAGAATGCATATATA
ACTAAATTTAAATTCATTACTAGTAAATTATTAAATTTATTAAATAATAATTGTAATTATTATAT
TTTAAATATTAAAACCTCTATTTTTA
Found at i:33771234 original size:15 final size:15
Alignment explanation
Indices: 33771183--33771234 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
33771173 CTAATAAATT
33771183 ATAATTATTATATTA
1 ATAATTATTATATTA
*
33771198 CTAATTATTATATTA
1 ATAATTATTATATTA
*
33771213 CTAATTA-TAT-TTA
1 ATAATTATTATATTA
33771226 ATAA-TATTA
1 ATAATTATTA
33771235 CTAATAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 2 0.06
13 8 0.24
14 3 0.09
15 21 0.62
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATTATTATATTA
Found at i:33771240 original size:12 final size:12
Alignment explanation
Indices: 33771169--33771241 Score: 55
Period size: 15 Copynumber: 5.9 Consensus size: 12
33771159 TTTCAAATTC
33771169 ATTACTAATAA-
1 ATTACTAATAAT
33771180 ATTA-TAATTATTAT
1 ATTACTAA-TA--AT
33771194 ATTACTAATTATTAT
1 ATTACTAA-TA--AT
*
33771209 ATTACTAATTAT
1 ATTACTAATAAT
33771221 ATT--TAATAAT
1 ATTACTAATAAT
33771231 ATTACTAATAA
1 ATTACTAATAA
33771242 GTTTTTAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
10 12 0.23
11 6 0.11
12 11 0.21
13 1 0.02
14 5 0.09
15 18 0.34
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTACTAATAAT
Found at i:33771341 original size:100 final size:100
Alignment explanation
Indices: 33771231--33771422 Score: 375
Period size: 100 Copynumber: 1.9 Consensus size: 100
33771221 ATTTAATAAT
*
33771231 ATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
33771296 CTATATTTTTAATATATAACCTATATTTCAAATTC
66 CTATATTTTTAATATATAACCTATATTTCAAATTC
33771331 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
33771396 CTATATTTTTAATATATAACCTATATT
66 CTATATTTTTAATATATAACCTATATT
33771423 AGTATGGATA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (100 bp):
ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
CTATATTTTTAATATATAACCTATATTTCAAATTC
Found at i:33771647 original size:9 final size:9
Alignment explanation
Indices: 33771579--33771657 Score: 52
Period size: 9 Copynumber: 8.8 Consensus size: 9
33771569 CCACATGACA
*
33771579 TACATAACT
1 TACATAATT
33771588 TACATAATT
1 TACATAATT
*
33771597 TACATAAATA
1 TACAT-AATT
* * *
33771607 TATATCATA
1 TACATAATT
* *
33771616 T-CAAAACT
1 TACATAATT
*
33771624 TACATAACT
1 TACATAATT
33771633 TACATAATT
1 TACATAATT
* *
33771642 TGCATATTT
1 TACATAATT
33771651 TACATAA
1 TACATAA
33771658 ATATATATGT
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
8 3 0.06
9 43 0.81
10 7 0.13
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (9 bp):
TACATAATT
Found at i:33772972 original size:56 final size:50
Alignment explanation
Indices: 33772881--33773069 Score: 193
Period size: 49 Copynumber: 3.7 Consensus size: 50
33772871 GGTGATGATA
*
33772881 TCCCATGTAAGACCATGT-TCGGGACATGGCATTGGCATCATTGAGACTATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
33772937 TCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * **
33772987 TCCC-CGTAAGACCATGTCTGGGACATGACATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * *
33773036 TCCCATGTAAGACCATATCTGGGATATGGAATTG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTG
33773070 ACAGTACAGG
Statistics
Matches: 114, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 41 0.36
50 35 0.31
53 3 0.03
55 1 0.01
56 33 0.29
57 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:33773371 original size:20 final size:20
Alignment explanation
Indices: 33773333--33773371 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33773323 TAAGCAAGCA
*
33773333 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
33773353 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
33773372 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:33775363 original size:78 final size:80
Alignment explanation
Indices: 33775199--33775381 Score: 196
Period size: 78 Copynumber: 2.3 Consensus size: 80
33775189 TGAATGATGT
* *
33775199 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
33775263 GTGCGAGATACTAATT
65 GTGCGAGATACTAATA
* * * * **
33775279 CTGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATT
*
33775341 GTGCGAGTTACT-ATAA
65 GTGCGAGATACTAAT-A
*
33775357 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
33775382 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
77 3 0.03
78 54 0.63
79 7 0.08
80 22 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAGATACTAATA
Found at i:33775388 original size:40 final size:40
Alignment explanation
Indices: 33775198--33775381 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
33775188 TTGAATGATG
* * * *
33775198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33775238 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33775278 TCTGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33775316 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33775357 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33775382 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33783226 original size:79 final size:81
Alignment explanation
Indices: 33783094--33783274 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
33783084 AATGATGTCC
* *
33783094 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
33783158 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
33783174 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTGT
*
33783236 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
33783253 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
33783275 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTATAACCG
Found at i:33783288 original size:40 final size:40
Alignment explanation
Indices: 33783094--33783274 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
33783084 AATGATGTCC
* * * *
33783094 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
33783134 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
33783174 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
* *
33783213 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
33783253 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
33783275 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:33783296 original size:79 final size:79
Alignment explanation
Indices: 33783143--33783307 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
33783133 GGACTAAGAT
* * **
33783143 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33783208 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33783222 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33783285 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33783301 CCGAAGG
1 CCGAAGG
33783308 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33785559 original size:9 final size:9
Alignment explanation
Indices: 33785529--33785828 Score: 184
Period size: 9 Copynumber: 34.7 Consensus size: 9
33785519 TATATCATAT
33785529 CATAACTTA
1 CATAACTTA
* **
33785538 CACAACTCG
1 CATAACTTA
33785547 CATAACTTA
1 CATAACTTA
33785556 CATAACTTA
1 CATAACTTA
33785565 CATAA--TA
1 CATAACTTA
*
33785572 CATAA-ATA
1 CATAACTTA
* * *
33785580 TATATCATA
1 CATAACTTA
33785589 TCATAACTTA
1 -CATAACTTA
33785599 CATAACTTA
1 CATAACTTA
**
33785608 TTTATACTTA
1 CATA-ACTTA
33785618 CATAA--TA
1 CATAACTTA
33785625 CATAACTTA
1 CATAACTTA
33785634 CATAACTTA
1 CATAACTTA
*
33785643 CATAATTTA
1 CATAACTTA
*
33785652 CATAA-ATA
1 CATAACTTA
* * *
33785660 TATATCATA
1 CATAACTTA
*
33785669 TCAAAACTTA
1 -CATAACTTA
*
33785679 CATAATTTA
1 CATAACTTA
*
33785688 CATAACTCA
1 CATAACTTA
33785697 CATAACTTA
1 CATAACTTA
33785706 CATAACTTA
1 CATAACTTA
33785715 CATAA--TA
1 CATAACTTA
*
33785722 CATAA-ATA
1 CATAACTTA
* * *
33785730 TATATCATA
1 CATAACTTA
* *
33785739 TCATAGCTGA
1 -CATAACTTA
33785749 CATAACTTA
1 CATAACTTA
**
33785758 TTTATACTTA
1 CATA-ACTTA
*
33785768 TATAA--TA
1 CATAACTTA
33785775 CATAACTTA
1 CATAACTTA
33785784 CATAA--TA
1 CATAACTTA
33785791 CATAA---A
1 CATAACTTA
*
33785797 TATAACTTA
1 CATAACTTA
*
33785806 CATAACTTT
1 CATAACTTA
33785815 CATAAC-TA
1 CATAACTTA
33785823 CATAAC
1 CATAAC
33785829 GTATTTATAC
Statistics
Matches: 230, Mismatches: 44, Indels: 35
0.74 0.14 0.11
Matches are distributed among these distances:
6 5 0.02
7 34 0.15
8 22 0.10
9 138 0.60
10 31 0.13
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:33785777 original size:141 final size:144
Alignment explanation
Indices: 33785529--33785800 Score: 410
Period size: 150 Copynumber: 1.9 Consensus size: 144
33785519 TATATCATAT
*
33785529 CATAACTTACACAACTCGCATAACTTACATAACTTACATAATACATAAATATATATCATATCATA
1 CATAACTTACACAACTCACATAACTTACATAACTTACATAATACATAAATATATATCATATCATA
*
33785594 ACTTACATAACTTATTTATACTTACATAATACATAACTTACATAACTTACATAATTTACATAAAT
66 ACTGACATAACTTATTTATACTT--ATAATA-ATAAC-TACATAACTTACATAA--TACATAAAT
33785659 ATATATCATATCAAAACTTA
125 ATATATCATATCAAAACTTA
* *
33785679 CATAATTTACATAACTCACATAACTTACATAACTTACATAATACATAAATATATATCATATCATA
1 CATAACTTACACAACTCACATAACTTACATAACTTACATAATACATAAATATATATCATATCATA
*
33785744 GCTGACATAACTTATTTATAC-T-T-AT-ATAA-TACATAACTTACATAATACATAAATATA
66 ACTGACATAACTTATTTATACTTATAATAATAACTACATAACTTACATAATACATAAATATA
33785801 ACTTACATAA
Statistics
Matches: 117, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
139 12 0.10
141 16 0.14
143 4 0.03
145 2 0.02
146 1 0.01
149 1 0.01
150 81 0.69
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (144 bp):
CATAACTTACACAACTCACATAACTTACATAACTTACATAATACATAAATATATATCATATCATA
ACTGACATAACTTATTTATACTTATAATAATAACTACATAACTTACATAATACATAAATATATAT
CATATCAAAACTTA
Found at i:33791136 original size:17 final size:17
Alignment explanation
Indices: 33791111--33791145 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33791101 TGCAAGCAAG
* *
33791111 CACAGTTGATCAAATTA
1 CACAATTGAGCAAATTA
33791128 CACAATTGAGCAAATTA
1 CACAATTGAGCAAATTA
33791145 C
1 C
33791146 TCAACTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (17 bp):
CACAATTGAGCAAATTA
Found at i:33797974 original size:20 final size:20
Alignment explanation
Indices: 33797951--33797991 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
33797941 AAATGTTTAA
33797951 AGAAAAAACAAATAAGTGAC
1 AGAAAAAACAAATAAGTGAC
33797971 AGAAAAAACAAATAAGTGAC
1 AGAAAAAACAAATAAGTGAC
33797991 A
1 A
33797992 TGATATGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.15, T:0.10
Consensus pattern (20 bp):
AGAAAAAACAAATAAGTGAC
Found at i:33798483 original size:27 final size:28
Alignment explanation
Indices: 33798450--33798504 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
33798440 TTGCCGCCAC
* *
33798450 CCTCCATTCCTTCTCCATC-TCACCGCT
1 CCTCCATTACTTCTCCATCGCCACCGCT
*
33798477 CCTCCATTATTTCTCCATCGCCACCGCT
1 CCTCCATTACTTCTCCATCGCCACCGCT
33798505 TATCTTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.13, C:0.49, G:0.05, T:0.33
Consensus pattern (28 bp):
CCTCCATTACTTCTCCATCGCCACCGCT
Found at i:33800634 original size:50 final size:50
Alignment explanation
Indices: 33800528--33800720 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 50
33800518 GGGAATGAGA
**
33800528 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A---TATGAGAGG
* *
33800584 TCCCATGTAAGACCATGTCAGGGACATGGCGTTGGCACCGAA-ATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC-AATATGAGAGG
** * * * * **
33800634 TCCCCCGTAAAACCATGTCTGGGACAAGACATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAGG
* *
33800684 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
33800721 ATACAGGAAC
Statistics
Matches: 113, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.02
50 74 0.65
54 1 0.01
56 35 0.31
57 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAGG
Found at i:33800993 original size:20 final size:20
Alignment explanation
Indices: 33800968--33801016 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
33800958 TGAGTTATTT
33800968 AAGTAAGCAAGGAAGTAAAA
1 AAGTAAGCAAGGAAGTAAAA
* *
33800988 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGGAAGTAAAA
33801008 AAG-AAGCAA
1 AAGTAAGCAA
33801017 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.59, C:0.04, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTAAGCAAGGAAGTAAAA
Found at i:33807794 original size:50 final size:50
Alignment explanation
Indices: 33807737--33807866 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
33807727 TACTGAGGTT
* ** *
33807737 ATGAGAGGTCCCATGTAAGACCATGTTTGGCACATGGTGTTGGCACCGAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGCACATGGCATGGGCACCGAA
* * *
33807787 ATGAGAGGTCCGC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCC-CATGTAAGACCATGTCTGGCACATGGCATGGGCACCGAA
** * *
33807837 ATGAGAACTCTCATGTAAGACCATATCTGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGG
33807867 GATATGACAT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.02
50 64 0.97
51 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGCACATGGCATGGGCACCGAA
Found at i:33808157 original size:20 final size:20
Alignment explanation
Indices: 33808132--33808180 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
33808122 TGAGTTATTT
33808132 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
33808152 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
33808172 AAG-AAGCAA
1 AAGTAAGCAA
33808181 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:33818455 original size:41 final size:41
Alignment explanation
Indices: 33818334--33818461 Score: 168
Period size: 41 Copynumber: 3.1 Consensus size: 41
33818324 AGATAGCGAT
* * **
33818334 TCAGGCTTTGTGCCTAGCATGCTTCTTGCTTGTGTATTG-A
1 TCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATTGTA
* *
33818374 TTCAGGCTTTGTGCCTAGCAGGTTTCGTGCCGGTGTATTGTA
1 -TCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATTGTA
* *
33818416 TCAGGCCTTGAGCCTAGCAAGCTTCGTGCCGGTGTATTGTA
1 TCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATTGTA
33818457 TCAGG
1 TCAGG
33818462 TAACTTGTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 76 0.99
42 1 0.01
ACGTcount: A:0.14, C:0.21, G:0.29, T:0.36
Consensus pattern (41 bp):
TCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATTGTA
Found at i:33827358 original size:45 final size:44
Alignment explanation
Indices: 33827275--33827359 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
33827265 AGATTAATTT
* * **
33827275 AAAAATATATTTTAATTTTAAATTTTTATTATTTATTTATATCA
1 AAAAATATATTTAAAATTTAAATTTGAATTATTTATTTATATCA
* *
33827319 AAAAATATATTTAAAATTTGAATTTGAATTTTATTATTTAT
1 AAAAATATATTTAAAATTTAAATTTGAATTAT-TTATTTAT
33827360 TATGGTTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 26 0.76
45 8 0.24
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (44 bp):
AAAAATATATTTAAAATTTAAATTTGAATTATTTATTTATATCA
Found at i:33832175 original size:3 final size:3
Alignment explanation
Indices: 33832167--33832197 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
33832157 TGTTTTGTAT
*
33832167 ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
33832198 ACTTGGGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33837825 original size:18 final size:18
Alignment explanation
Indices: 33837804--33837838 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33837794 CTCCATTAAA
33837804 AGTTTTTATT-TACAATAT
1 AGTTTTT-TTGTACAATAT
33837822 AGTTTTTTTGTACAATA
1 AGTTTTTTTGTACAATA
33837839 AAAACTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (18 bp):
AGTTTTTTTGTACAATAT
Found at i:33839865 original size:30 final size:31
Alignment explanation
Indices: 33839812--33839875 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
33839802 TTTTAGCTAT
*
33839812 ATTTGACCCTCAACCTATTAAAAAAAGTT-A
1 ATTTGACCATCAACCTATTAAAAAAAGTTGA
* *
33839842 ATTTGACCATCAA-CTTTTCAAAAAGAGTTGA
1 ATTTGACCATCAACCTATT-AAAAAAAGTTGA
33839873 ATT
1 ATT
33839876 GATTTTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 4 0.14
30 21 0.72
31 4 0.14
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (31 bp):
ATTTGACCATCAACCTATTAAAAAAAGTTGA
Found at i:33841643 original size:43 final size:43
Alignment explanation
Indices: 33841591--33841673 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
33841581 AAGAAGAACA
33841591 AAATCCGGAGTTAGACCCGGGAAAGAAAAAGGTTGAAGACATG
1 AAATCCGGAGTTAGACCCGGGAAAGAAAAAGGTTGAAGACATG
33841634 AAATCCGGAGTTAGACCCGGGAAAGAAAAAGGTTGAAGAC
1 AAATCCGGAGTTAGACCCGGGAAAGAAAAAGGTTGAAGAC
33841674 TAAAGTGCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.42, C:0.14, G:0.30, T:0.13
Consensus pattern (43 bp):
AAATCCGGAGTTAGACCCGGGAAAGAAAAAGGTTGAAGACATG
Found at i:33842010 original size:50 final size:50
Alignment explanation
Indices: 33841898--33842093 Score: 212
Period size: 50 Copynumber: 3.8 Consensus size: 50
33841888 ATTTGGTTAA
* * *
33841898 AGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATTAAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-TATG
* * *
33841954 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
* * *
33842004 AGAGGTCCCCTGTAAGACCTTGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
** * * *
33842054 AGAACTCCCATGTAAGACCATATCTGGGATATGACATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
33842094 TAGTACAGAA
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.66
51 2 0.02
55 1 0.01
56 38 0.32
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATG
Found at i:33849629 original size:75 final size:75
Alignment explanation
Indices: 33849535--33849692 Score: 190
Period size: 75 Copynumber: 2.1 Consensus size: 75
33849525 ATGCAACGAG
* * ** *
33849535 TCCCTCCCCAATCCCAAAGCTATAATTCATATATCATTACATGTTTGGTACCCAACAATGAATGA
1 TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCAGTACCCAACAATGAAAGA
33849600 ATCGTCCTGA
66 ATCGTCCTGA
* * * * * * * *
33849610 TCTCTCCCCAATTCTAAAGCTGGAATTCAGATATCGTTGCATGTTCAGTACCCAATAGTGAAAGA
1 TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCAGTACCCAACAATGAAAGA
*
33849675 ATCGTCCTGG
66 ATCGTCCTGA
33849685 TCCCTCCC
1 TCCCTCCC
33849693 TTTTTGCAAC
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (75 bp):
TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCAGTACCCAACAATGAAAGA
ATCGTCCTGA
Found at i:33851461 original size:22 final size:22
Alignment explanation
Indices: 33851428--33851470 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
33851418 TAGCTATTTC
33851428 TTTTCGTCTTTATCATT-TTAGT
1 TTTTCGTCTTTAT-ATTGTTAGT
33851450 TTTTC-TCTTTTATATTGTTAG
1 TTTTCGTC-TTTATATTGTTAG
33851471 AAGTCTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.12, G:0.09, T:0.65
Consensus pattern (22 bp):
TTTTCGTCTTTATATTGTTAGT
Found at i:33859121 original size:15 final size:15
Alignment explanation
Indices: 33859097--33859127 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33859087 AAATGAGTCC
*
33859097 ATTGCCATTGTAATA
1 ATTGCAATTGTAATA
33859112 ATTGCAATTGTAATA
1 ATTGCAATTGTAATA
33859127 A
1 A
33859128 GGCTAGGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTGCAATTGTAATA
Found at i:33861323 original size:17 final size:17
Alignment explanation
Indices: 33861301--33861334 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
33861291 AGCACCAATG
33861301 ACTCTTGACCTTTCATA
1 ACTCTTGACCTTTCATA
33861318 ACTCTTGACCTTTCATA
1 ACTCTTGACCTTTCATA
33861335 TAACATAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.06, T:0.41
Consensus pattern (17 bp):
ACTCTTGACCTTTCATA
Found at i:33873497 original size:27 final size:27
Alignment explanation
Indices: 33873481--33873555 Score: 141
Period size: 27 Copynumber: 2.8 Consensus size: 27
33873471 GCTACTAATT
33873481 GTGCCTCATAGGGAGGCGCCATTAAAA
1 GTGCCTCATAGGGAGGCGCCATTAAAA
33873508 GTGCCTCATAGGGAGGCGCCATTAAAA
1 GTGCCTCATAGGGAGGCGCCATTAAAA
*
33873535 GTGCCTTATAGGGAGGCGCCA
1 GTGCCTCATAGGGAGGCGCCA
33873556 ATGGGTAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.27, C:0.23, G:0.32, T:0.19
Consensus pattern (27 bp):
GTGCCTCATAGGGAGGCGCCATTAAAA
Found at i:33873625 original size:23 final size:22
Alignment explanation
Indices: 33873563--33873613 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
33873553 CCAATGGGTA
*
33873563 ATTTTGTATGAATATTGTAATT
1 ATTTTCTATGAATATTGTAATT
*
33873585 -TTTTGTATGAATATTGTAATT
1 ATTTTCTATGAATATTGTAATT
33873606 ATTTTCTA
1 ATTTTCTA
33873614 ATTAATTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (22 bp):
ATTTTCTATGAATATTGTAATT
Found at i:33873682 original size:61 final size:61
Alignment explanation
Indices: 33873585--33873731 Score: 251
Period size: 61 Copynumber: 2.4 Consensus size: 61
33873575 TATTGTAATT
* * *
33873585 TTTTGTATGAATATTGTAATTATTTTCTAATTAATTTTGTAGTTATAGTTTTTGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTAGATTAGTA
*
33873646 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTATTTATAGTTTTAGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTAGATTAGTA
33873707 TTTTGTATGAATATTGTAATT-TTTT
1 TTTTGTATGAATATTGTAATTATTTT
33873732 GTATGAATAT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
60 4 0.05
61 78 0.95
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (61 bp):
TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTAGATTAGTA
Found at i:33873733 original size:48 final size:48
Alignment explanation
Indices: 33873701--33873795 Score: 142
Period size: 46 Copynumber: 2.0 Consensus size: 48
33873691 TAGTTTTAGA
33873701 TTAGT-ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
1 TTAGTAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
* * *
33873748 TTTGTAATTTTGTATGATTATTGTAA--TTTTGTATGAATATTTTAAT
1 TTAGTAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
33873794 TT
1 TT
33873796 TGTATTTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 21 0.48
47 4 0.09
48 19 0.43
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (48 bp):
TTAGTAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAAT
Found at i:33873752 original size:19 final size:19
Alignment explanation
Indices: 33873706--33873941 Score: 124
Period size: 19 Copynumber: 13.2 Consensus size: 19
33873696 TTAGATTAGT
33873706 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
33873725 ATTTT-T-TG--TA-TG-A
1 ATTTTGTATGAATATTGTA
* *
33873738 ATATTG--T-AATTTTGTA
1 ATTTTGTATGAATATTGTA
*
33873754 ATTTTGTATGATTATTGTA
1 ATTTTGTATGAATATTGTA
*
33873773 ATTTTGTATGAATATTTTA
1 ATTTTGTATGAATATTGTA
*
33873792 ATTTTG--T--AT-TTAT-
1 ATTTTGTATGAATATTGTA
*
33873805 AGTTT-T-TG-AT-TTGT-
1 ATTTTGTATGAATATTGTA
33873819 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
*
33873838 ATTATTTTAT-AATTAATTTTGT-
1 ATT-TTGTATGAA-T-A--TTGTA
* * *
33873860 ATTTATAGTTTTGGAT-TAGT-
1 ATTT-T-G-TATGAATATTGTA
33873880 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
33873899 ATTTTTTGTATGAATATTGTA
1 A--TTTTGTATGAATATTGTA
33873920 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
33873939 ATT
1 ATT
33873942 ATTTTATAAT
Statistics
Matches: 170, Mismatches: 19, Indels: 56
0.69 0.08 0.23
Matches are distributed among these distances:
13 11 0.06
14 15 0.09
15 7 0.04
16 8 0.05
17 10 0.06
18 10 0.06
19 63 0.37
20 13 0.08
21 21 0.12
22 4 0.02
23 4 0.02
24 3 0.02
25 1 0.01
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (19 bp):
ATTTTGTATGAATATTGTA
Found at i:33873752 original size:67 final size:62
Alignment explanation
Indices: 33873585--33873794 Score: 236
Period size: 61 Copynumber: 3.3 Consensus size: 62
33873575 TATTGTAATT
* *
33873585 TTTTGTATGAATATTGTAATTATTTTCT-A-ATTAATTTTGTAGTTATAGTTTTTGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATATTAATTTTGTATTTATAG-TTTTGATTAGTA
33873646 TTTTGTATGAATATTGTAATTATTTTATAATA--AATTTTGTATTTATAGTTTTAGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATATTAATTTTGTATTTATAGTTTT-GATTAGTA
* *
33873707 TTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTGTAATTT-T-G-TATGATTAT
1 TTTTGTATGAATATTGTAATTATTT-TAT-AATA-T-TAATTTTGT-ATTTATAGTTTTGATTA-
33873769 TGTAA
60 -GT-A
*
33873774 TTTTGTATGAATATTTTAATT
1 TTTTGTATGAATATTGTAATT
33873795 TTGTATTTAT
Statistics
Matches: 131, Mismatches: 5, Indels: 20
0.84 0.03 0.13
Matches are distributed among these distances:
60 4 0.03
61 74 0.56
62 4 0.03
63 5 0.04
64 5 0.04
65 2 0.02
66 3 0.02
67 30 0.23
68 4 0.03
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (62 bp):
TTTTGTATGAATATTGTAATTATTTTATAATATTAATTTTGTATTTATAGTTTTGATTAGTA
Found at i:33873754 original size:8 final size:8
Alignment explanation
Indices: 33873741--33873780 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
33873731 TGTATGAATA
33873741 TTGTAATT
1 TTGTAATT
33873749 TTGTAATT
1 TTGTAATT
33873757 TTGTATGATT
1 TTGTA--ATT
33873767 ATTGTAATT
1 -TTGTAATT
33873776 TTGTA
1 TTGTA
33873781 TGAATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 18 0.62
9 3 0.10
10 3 0.10
11 5 0.17
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (8 bp):
TTGTAATT
Found at i:33873764 original size:27 final size:27
Alignment explanation
Indices: 33873728--33873780 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
33873718 TATTGTAATT
33873728 TTTTGTATGAATATTGTAATTTTGTAA
1 TTTTGTATGAATATTGTAATTTTGTAA
*
33873755 TTTTGTATGATTATTGTAATTTTGTA
1 TTTTGTATGAATATTGTAATTTTGTA
33873781 TGAATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.58
Consensus pattern (27 bp):
TTTTGTATGAATATTGTAATTTTGTAA
Found at i:33873812 original size:61 final size:62
Alignment explanation
Indices: 33873706--33873928 Score: 206
Period size: 61 Copynumber: 3.5 Consensus size: 62
33873696 TTAGATTAGT
* * *
33873706 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTG-TAATTTTGTATGATTATT
1 ATTTTGTATGAATATTGTAA--TTTTGTAT--TTATAGT--TTTTGTTAATTTTGTATGAATATT
33873770 GTA
60 GTA
* *
33873773 ATTTTGTATGAATATTTTAATTTTGTATTTATAGTTTTTGATTTGTATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTAATTTTGTATTTATAGTTTTTG--TT-AATTTTGTATGAATATTGTA
* *
33873838 ATTATT-T-T--ATAAT-TAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGT
1 ATT-TTGTATGAATATTGTAATTTTGTATTTATAGTTTTTG-TTA--ATTTTGTATGAATATTGT
33873898 A
62 A
33873899 ATTTTTTGTATGAATATTGTAATTTTGTAT
1 A--TTTTGTATGAATATTGTAATTTTGTAT
33873929 GAATATTGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 28
0.78 0.06 0.16
Matches are distributed among these distances:
60 2 0.02
61 47 0.36
62 6 0.05
63 8 0.06
64 3 0.02
65 30 0.23
66 6 0.05
67 30 0.23
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (62 bp):
ATTTTGTATGAATATTGTAATTTTGTATTTATAGTTTTTGTTAATTTTGTATGAATATTGTA
Found at i:33873821 original size:113 final size:110
Alignment explanation
Indices: 33873645--33873845 Score: 307
Period size: 113 Copynumber: 1.8 Consensus size: 110
33873635 TTTGATTAGT
*
33873645 ATTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTATTTATAGTTTTAGATTAGTATTT
1 ATTTTGTATGAATATTGTAATTATTGTATAATAAATTTTGTATTTATAGTTTTAGATTAGTATTT
33873710 TGTATGAATATTGTAATT-TTTTGTATGAATATTGTAATTTTGTA
66 TGTATGAATATTGTAATTATTTTGTATGAATATTGTAATTTTGTA
* * *
33873754 ATTTTGTATGATTATTGTAATT-TTGTATGAATATTTTAATTTTGTATTTATAGTTTTTGATTTG
1 ATTTTGTATGAATATTGTAATTATTGTAT-AATA----AATTTTGTATTTATAGTTTTAGATTAG
33873818 TATTTTGTATGAATATTGTAATTATTTT
61 TATTTTGTATGAATATTGTAATTATTTT
33873846 ATAATTAATT
Statistics
Matches: 82, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
108 5 0.06
109 25 0.30
113 48 0.59
114 4 0.05
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (110 bp):
ATTTTGTATGAATATTGTAATTATTGTATAATAAATTTTGTATTTATAGTTTTAGATTAGTATTT
TGTATGAATATTGTAATTATTTTGTATGAATATTGTAATTTTGTA
Found at i:33874002 original size:60 final size:60
Alignment explanation
Indices: 33873937--33874052 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
33873927 ATGAATATTG
* * * * * *
33873937 TAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTC
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
33873997 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
33874053 ATTAGTTTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (60 bp):
TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
Found at i:33874210 original size:15 final size:16
Alignment explanation
Indices: 33874174--33874210 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
33874164 CTCATTTAAT
*
33874174 TTTTATATAATGTAAC
1 TTTTATATAAAGTAAC
33874190 TTTTATATAAAGTAA-
1 TTTTATATAAAGTAAC
33874205 TTTTAT
1 TTTTAT
33874211 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (16 bp):
TTTTATATAAAGTAAC
Found at i:33885897 original size:9 final size:10
Alignment explanation
Indices: 33885867--33885900 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
33885857 AAAGTTGTAA
33885867 TATATTTTTCT
1 TATA-TTTTCT
33885878 TATATTTTCT
1 TATATTTTCT
33885888 TATA-TTTCT
1 TATATTTTCT
33885897 TATA
1 TATA
33885901 AAAAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 10 0.43
11 4 0.17
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (10 bp):
TATATTTTCT
Found at i:33893484 original size:16 final size:16
Alignment explanation
Indices: 33893463--33893497 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
33893453 TCAAAGGGCA
33893463 ATGGTCACCCTGTTTC
1 ATGGTCACCCTGTTTC
33893479 ATGGTCACCCTGTTTC
1 ATGGTCACCCTGTTTC
33893495 ATG
1 ATG
33893498 ACATGATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.29, G:0.20, T:0.37
Consensus pattern (16 bp):
ATGGTCACCCTGTTTC
Found at i:33897795 original size:98 final size:97
Alignment explanation
Indices: 33897661--33898142 Score: 332
Period size: 98 Copynumber: 5.0 Consensus size: 97
33897651 TACAGCGGAA
*
33897661 CAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
*
33897726 ATCTCTCTGAAGTTACTGTAGAGTAGATCGCAT
66 ATCTCTCTGAAGTTAC-ATAGAGTAGATCGCAT
* * * * * ** *
33897759 CAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCT--AGTAATC
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAAG-GATC
* *
33897822 CTATCTCCCTG-AGATTAC----AGT-G---G-A-
64 TTATCTCTCTGAAG-TTACATAGAGTAGATCGCAT
* * * * * * * * *
33897846 CATATTGAA-ATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGA
1 CAGATTGAAGCT--AGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCAGAT----T-AAAAT-A
* * *
33897908 AGCCAGAAATCTTATCTCCCTG-AGATTAC--AGCG--GA--G---
57 A---AG-GATCTTATCTCTCTGAAG-TTACATAGAGTAGATCGCAT
* *
33897944 CAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
*
33898009 ATCTCTTTGAAGTTACAGTAGAGTAGATCGCAT
66 ATCTCTCTGAAGTTACA-TAGAGTAGATCGCAT
*
33898042 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGTAAAGGATCTT
1 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* *
33898107 ATCTTTCTGAAGTTACAATTGAGTAGATCGCAT
66 ATCTCTCTGAAGTTAC-ATAGAGTAGATCGCAT
33898140 CAG
1 CAG
33898143 GTCTTATCTC
Statistics
Matches: 302, Mismatches: 48, Indels: 68
0.72 0.11 0.16
Matches are distributed among these distances:
86 1 0.00
87 34 0.11
88 19 0.06
89 5 0.02
91 6 0.02
92 3 0.01
93 8 0.03
94 1 0.00
95 1 0.00
97 29 0.10
98 187 0.62
99 8 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (97 bp):
CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
ATCTCTCTGAAGTTACATAGAGTAGATCGCAT
Found at i:33897870 original size:43 final size:44
Alignment explanation
Indices: 33897759--33897993 Score: 145
Period size: 44 Copynumber: 5.1 Consensus size: 44
33897749 TAGATCGCAT
** * *
33897759 CAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGTGAAG
1 CAGATTGAAGATAGTAATCTTATCTCCCTGAGATTACAGTGAAG
* * *
33897803 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGA-
1 CAGATTGAAGATAGTAATCTTATCTCCCTGAGATTACAGTGAAG
* * *
33897846 CATATTGAA-ATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG
1 CAGATTGAAGAT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G-A-A--G
** * * *
33897897 CATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 ---CAGATTGAAGATAGTAATCTTATCTCCCTGAGATTACAGTGAAG
* * * * *
33897944 CAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAG
1 CAGATTGAAGATAGTAATCTTATCTCCCTGAGATTACAGTGAAG
33897988 CAGATT
1 CAGATT
33897994 AAAATAAAGG
Statistics
Matches: 150, Mismatches: 24, Indels: 34
0.72 0.12 0.16
Matches are distributed among these distances:
42 2 0.01
43 28 0.19
44 84 0.56
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
51 1 0.01
53 2 0.01
54 28 0.19
55 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
CAGATTGAAGATAGTAATCTTATCTCCCTGAGATTACAGTGAAG
Found at i:33898076 original size:283 final size:283
Alignment explanation
Indices: 33897569--33898091 Score: 920
Period size: 283 Copynumber: 1.8 Consensus size: 283
33897559 TTCCTAATCG
* * *
33897569 GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGCATCAGATTGAAGCCAGAAT
1 GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
*
33897634 TCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
66 TCTTATCTCCCTGAGATTACAGCGGAACAGACTAAAGCTAGTAATCCTATCTCCCTGAGATTACA
*
33897699 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGAT
131 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
* *
33897764 TGAAGCCAGAAATCTTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
196 TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
33897829 CCTGAGATTACAGTGGACATATT
261 CCTGAGATTACAGTGGACATATT
33897852 GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
1 GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
* * *
33897917 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTATA
66 TCTTATCTCCCTGAGATTACAGCGGAACAGACTAAAGCTAGTAATCCTATCTCCCTGAGATTACA
*
33897982 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGAT
131 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
* * *
33898047 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATT
196 TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATT
33898092 AAAGTAAAGG
Statistics
Matches: 226, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
283 226 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (283 bp):
GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
TCTTATCTCCCTGAGATTACAGCGGAACAGACTAAAGCTAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
CCTGAGATTACAGTGGACATATT
Found at i:33898110 original size:142 final size:142
Alignment explanation
Indices: 33897570--33898095 Score: 874
Period size: 142 Copynumber: 3.7 Consensus size: 142
33897560 TCCTAATCGG
* * *
33897570 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGCATCAGATTGAAGCCAGAATT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * *
33897635 CTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTACAG
33897700 TGGAGCAGATTA
131 TGGAGCAGATTA
*
33897712 AAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * * *
33897777 CTTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTACAG
* *
33897842 TGGA-CATATTG
131 TGGAGCAGATTA
33897853 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
*
33897918 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTATAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTACAG
33897983 TGGAGCAGATTA
131 TGGAGCAGATTA
* * *
33897995 AAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCTAGTAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* *
33898060 CCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAG
33898096 TAAAGGATCT
Statistics
Matches: 359, Mismatches: 24, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 133 0.37
142 226 0.63
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTACAG
TGGAGCAGATTA
Found at i:33898292 original size:50 final size:50
Alignment explanation
Indices: 33898220--33898350 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 50
33898210 AGTGGAGCAA
** * * * *
33898220 ATTAAAGCCACATCGGTGAATCTTCCTTCCCCGATACTACAGTTAAAAAG
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
* * * * *
33898270 ATTAAAGCCACAAAGGCAAATCTTACTTCCCTGGCAGTGCAGTCAAAAAG
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
* * *
33898320 ATTGAAGCTACAATGGCGAATCTTACTTCCC
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCC
33898351 AAAAGTTGCG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (50 bp):
ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
Found at i:33910248 original size:50 final size:50
Alignment explanation
Indices: 33910132--33910316 Score: 187
Period size: 50 Copynumber: 3.7 Consensus size: 50
33910122 GAATATAACA
* * * * * *
33910132 TGCCAAAGCTATGTCCCAGA-ATAGTCTTACATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATAGG
* * *
33910180 TACCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
* ** ** * *
33910230 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
*
33910280 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
33910317 CCTCAGATAA
Statistics
Matches: 112, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
48 19 0.17
49 20 0.18
50 73 0.65
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
Found at i:33910317 original size:50 final size:50
Alignment explanation
Indices: 33910182--33910377 Score: 203
Period size: 50 Copynumber: 3.8 Consensus size: 50
33910172 TCTTGTACTA
* * ** * *
33910182 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* **
33910232 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * *
33910282 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCAGATAATCTCAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC---TCATCTC---GGTG
* * *
33910338 CCAATGCTATGTCCCAGACACGGTCTTACATGGGATCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33910378 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
50 76 0.63
53 7 0.06
56 38 0.31
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:33913823 original size:20 final size:20
Alignment explanation
Indices: 33913794--33913841 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
33913784 ATTATTTTAA
*
33913794 AATTATTTTTGACCCA-AATT
1 AATTAATTTT-ACCCATAATT
*
33913814 AATTAATTTTACCTATAATT
1 AATTAATTTTACCCATAATT
33913834 AATTAATT
1 AATTAATT
33913842 ACTTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (20 bp):
AATTAATTTTACCCATAATT
Found at i:33918623 original size:25 final size:25
Alignment explanation
Indices: 33918581--33918675 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
33918571 TAGCTCATAT
* *
33918581 GAGCTTACCGA-TACTCAGCTCGCAT
1 GAGCTTACC-ATTATTCAGCTCGCAG
** *
33918606 GAGCTTACTTTTATTCAGCTCGGAG
1 GAGCTTACCATTATTCAGCTCGCAG
*
33918631 GAGCTTACCATTATTCAGCTCGGAG
1 GAGCTTACCATTATTCAGCTCGCAG
* *
33918656 GACCTTACCATT-TACAGCTC
1 GAGCTTACCATTATTCAGCTC
33918676 ATAAGAGCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.12
25 53 0.88
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (25 bp):
GAGCTTACCATTATTCAGCTCGCAG
Found at i:33918626 original size:50 final size:49
Alignment explanation
Indices: 33918572--33918691 Score: 109
Period size: 50 Copynumber: 2.4 Consensus size: 49
33918562 TACTGATTTT
* * * *
33918572 AGCTCATATGAGCTTACCGATACTCAGCTCGCATGAGCTTA-CTTTTATTC
1 AGCTCATAAGAGCTTACCGATACTCAGCTCGCAGGACCTTACCATTTA--C
** * * *
33918622 AGCTCGGAGGAGCTTACC-ATTATTCAGCTCGGAGGACCTTACCATTTAC
1 AGCTCATAAGAGCTTACCGA-TACTCAGCTCGCAGGACCTTACCATTTAC
*
33918671 AGCTCATAAGAGCATACCGAT
1 AGCTCATAAGAGCTTACCGAT
33918692 TCAAAACTCG
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
49 17 0.31
50 33 0.60
51 5 0.09
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (49 bp):
AGCTCATAAGAGCTTACCGATACTCAGCTCGCAGGACCTTACCATTTAC
Found at i:33919998 original size:66 final size:66
Alignment explanation
Indices: 33919892--33920015 Score: 185
Period size: 66 Copynumber: 1.9 Consensus size: 66
33919882 ATCAGACAGT
* * * *
33919892 TGTCAACTGTGGCGACAATTTTGAATGCCATCTAGAATTAACTCATGCAACGACATTACAGATAT
1 TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTACAGATAT
33919957 C
66 C
* * *
33919958 TGTCAACTGTGGCGACAATTTTGGACGCAATCTGGAATTAAATCATGTAACGAAATTA
1 TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTA
33920016 GTGCAGAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (66 bp):
TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTACAGATAT
C
Found at i:33920601 original size:20 final size:20
Alignment explanation
Indices: 33920568--33920611 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
33920558 TAATGAGAGT
* *
33920568 AAATGCAATGGAAAGTAATA
1 AAATGCAATGGAAAATAAGA
33920588 AAATGCAAAT-GAAAATAAGA
1 AAATGC-AATGGAAAATAAGA
33920608 AAAT
1 AAAT
33920612 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18
Consensus pattern (20 bp):
AAATGCAATGGAAAATAAGA
Found at i:33921568 original size:15 final size:15
Alignment explanation
Indices: 33921548--33921576 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33921538 TCATCCACAC
33921548 GGGTTGCAAGTCAAA
1 GGGTTGCAAGTCAAA
33921563 GGGTTGCAAGTCAA
1 GGGTTGCAAGTCAA
33921577 GCTGTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (15 bp):
GGGTTGCAAGTCAAA
Done.