Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 112 of 196
Found at i:33929007 original size:19 final size:20
Alignment explanation
Indices: 33928976--33929032 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 20
33928966 AAGACTAAGA
33928976 ACCATTCCATTTACTTAGTT
1 ACCATTCCATTTACTTAGTT
*
33928996 ACCATT-CATTTACTTACTT
1 ACCATTCCATTTACTTAGTT
*
33929015 TCCATTCCATTTACTTAG
1 ACCATTCCATTTACTTAG
33929033 CATAAACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.25, C:0.26, G:0.04, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:33930793 original size:56 final size:51
Alignment explanation
Indices: 33930731--33930899 Score: 162
Period size: 50 Copynumber: 3.3 Consensus size: 51
33930721 AATGAGATCT
* * **
33930731 CATGTAAGAACATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCA--ACCGA-G--ATGAGAGGTCC
* *
33930787 CATGTAAGACCATGTTTAGGACATGGCATAGGC-ACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
* * * * ** *
33930837 CACGTAAGACCATGTCTGGGACATGTCATGGGC-ACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
33930887 CATGTAAGACCAT
1 CATGTAAGACCAT
33930900 ATTTGGGATA
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 64 0.66
52 1 0.01
53 3 0.03
56 29 0.30
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
Found at i:33930830 original size:50 final size:50
Alignment explanation
Indices: 33930776--33930899 Score: 167
Period size: 50 Copynumber: 2.5 Consensus size: 50
33930766 TATTGAGGTT
*
33930776 ATGAGAGGTCCCATGTAAGACCATGTTTAGGACATGGCATAGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATAGGCACCGAG
* * * * *
33930826 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGTCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATAGGCACCGAG
** *
33930876 ATGAGAACTCTCATGTAAGACCAT
1 ATGAGAGGTCCCATGTAAGACCAT
33930900 ATTTGGGATA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATAGGCACCGAG
Found at i:33931188 original size:12 final size:12
Alignment explanation
Indices: 33931171--33931209 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33931161 ATGAGTTATT
33931171 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
33931183 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
33931195 TAAGTGAGTAAG
1 TAAGTAAGCAAG
33931207 TAA
1 TAA
33931210 AGAAGAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:33935178 original size:50 final size:54
Alignment explanation
Indices: 33935067--33935214 Score: 189
Period size: 50 Copynumber: 2.8 Consensus size: 54
33935057 ATTTAAGTAA
* *
33935067 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAAGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAAG-TATG
*
33935123 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CG-AG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAAGTATG
* *
33935173 AGAGGTCCTC-CGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCA
33935215 AGTTATTATC
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
50 41 0.48
51 1 0.01
52 2 0.02
53 1 0.01
55 1 0.01
56 40 0.47
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (54 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAAGTATG
Found at i:33938235 original size:51 final size:49
Alignment explanation
Indices: 33938111--33938298 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
33938101 ATTATTATCA
* * * * * *
33938111 TTCGATACACATAGTAGCCTTCAAATAGTACTACACAGGTGATCAAATTT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CAAAATC
* * *
33938161 TTCGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAACC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CAAAATC
* *
33938211 TTCCGGTACACATAGTAGCCTGCACATAGTACTACA-ATGTGACAATTATC
1 TT-CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACAA-AATC
* * * *
33938261 TATCGATACACGTAGTAGCTTGCACTTAGTACTACACA
1 T-TCGGTACACATAGTAGCCTGCACATAGTACTACACA
33938299 TGTGTTTATA
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
49 3 0.03
50 79 0.69
51 33 0.29
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (49 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACAAAATC
Found at i:33938273 original size:101 final size:101
Alignment explanation
Indices: 33938116--33938298 Score: 255
Period size: 101 Copynumber: 1.8 Consensus size: 101
33938106 TATCATTCGA
* * *
33938116 TACACATAGTAGCCTTCAAATAGTACTACACAGGTGATCAAATTTTTCGGTTCACGTAGTAGCCT
1 TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAAATTTTTCGATACACGTAGTAGCCT
33938181 GCACATAGTACTACACACGTGACCAAAACCTTCCGG
66 GCACATAGTACTACACACGTGACCAAAACCTTCCGG
* *
33938217 TACACATAGTAGCCTGCACATAGTACTACA-ATGTGA-C-AATTATCTATCGATACACGTAGTAG
1 TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAAATT-T-T-TCGATACACGTAGTAG
* *
33938279 CTTGCACTTAGTACTACACA
63 CCTGCACATAGTACTACACA
33938299 TGTGTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
98 4 0.06
99 2 0.03
100 6 0.08
101 60 0.83
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (101 bp):
TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAAATTTTTCGATACACGTAGTAGCCT
GCACATAGTACTACACACGTGACCAAAACCTTCCGG
Found at i:33945906 original size:51 final size:51
Alignment explanation
Indices: 33945796--33945974 Score: 236
Period size: 51 Copynumber: 3.5 Consensus size: 51
33945786 TTCGATGCAT
* * * * *
33945796 GTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACTTTCCAGTTCAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCAGTACAC
33945846 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCAGTACAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCAGTACAC
* ** * *
33945897 ATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTATCGA-TACAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCT-TCCAGTACAC
*
33945948 GTAGTAGCCTGCACTTAGTACTACACA
1 GTAGTAGCCTGCACATAGTACTACACA
33945975 CGTGTTTATA
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 31 0.27
51 81 0.70
52 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (51 bp):
GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCAGTACAC
Found at i:33951027 original size:14 final size:15
Alignment explanation
Indices: 33951003--33951031 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33950993 TGCTATGCTT
33951003 AATGAAATGTTTAGA
1 AATGAAATGTTTAGA
33951018 AATG-AATGTTTAGA
1 AATGAAATGTTTAGA
33951032 TGTTACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (15 bp):
AATGAAATGTTTAGA
Found at i:33956227 original size:27 final size:27
Alignment explanation
Indices: 33956176--33956504 Score: 306
Period size: 27 Copynumber: 12.3 Consensus size: 27
33956166 TGCTAATTGT
* *
33956176 GGGTAAAATGA-TCAAAATACGCTCGAA
1 GGGTAAAATTACTC-AAATACCCTCGAA
33956203 GGGTAAAATTACT-AAATTACCCTCGAA
1 GGGTAAAATTACTCAAA-TACCCTCGAA
* * **
33956230 AGGTTAAATTACAGAAATACCCTCGAA
1 GGGTAAAATTACTCAAATACCCTCGAA
* *
33956257 GGGTAAAATTACTAAAATACCCTCAAA
1 GGGTAAAATTACTCAAATACCCTCGAA
*
33956284 GGGTAAAATTA-TCGAAATA---TCGAT
1 GGGTAAAATTACTC-AAATACCCTCGAA
* * ** *
33956308 GGCTAAAATTACTGAAATACATTCTAA
1 GGGTAAAATTACTCAAATACCCTCGAA
*
33956335 GTGTAAAAATTA-TCAAAATACCCTCGAA
1 GGGT-AAAATTACTC-AAATACCCTCGAA
* *
33956363 GGGTAAAATTATTGAAATACCCTCGAA
1 GGGTAAAATTACTCAAATACCCTCGAA
*
33956390 GGGTAAAATTAC-CAAAATACCCACGAA
1 GGGTAAAATTACTC-AAATACCCTCGAA
33956417 GGGTAAAATTA-TCAAAATACCCTCGAA
1 GGGTAAAATTACTC-AAATACCCTCGAA
*
33956444 GGGTAAAATTACTGAAATACCACT--AA
1 GGGTAAAATTACTCAAATACC-CTCGAA
*
33956470 GGGTAAAATTA-TCATAATACCC-CTAA
1 GGGTAAAATTACTCA-AATACCCTCGAA
33956496 GGGTAAAAT
1 GGGTAAAAT
33956505 GATCTTTATA
Statistics
Matches: 253, Mismatches: 31, Indels: 37
0.79 0.10 0.12
Matches are distributed among these distances:
24 18 0.07
25 4 0.02
26 34 0.13
27 169 0.67
28 28 0.11
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (27 bp):
GGGTAAAATTACTCAAATACCCTCGAA
Found at i:33956390 original size:133 final size:132
Alignment explanation
Indices: 33956201--33956504 Score: 400
Period size: 133 Copynumber: 2.3 Consensus size: 132
33956191 AATACGCTCG
* * *
33956201 AAGGGTAAAATTA-CTAAATTACCCTCGAAAGGTTAAATTACAGAAATACCCTCGAAGGGTAAAA
1 AAGGGTAAAATTATC-AAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAA
* * * *
33956265 TTACTAAAATACCCTCAAAGGGTAAAATTATCGAAATA-TCGATGGCTAAAATTACTGAAATA-C
65 TTACCAAAATACCCACAAAGGGTAAAATTATCAAAATACTCGAAGGCTAAAATTACTGAAATACC
33956328 ATTCT
130 A--CT
* **
33956333 AAGTGTAAAAATTATCAAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCGAAGGGTAAAA
1 AAGGGT-AAAATTATCAAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAA
* *
33956398 TTACCAAAATACCCACGAAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATTACTGAAATA
65 TTACCAAAATACCCACAAAGGGTAAAATTATCAAAATA--CTCGAAGGCTAAAATTACTGAAATA
33956463 CCACT
128 CCACT
* *
33956468 AAGGGTAAAATTATCATAATACCC-CTAAGGGTAAAAT
1 AAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAAT
33956505 GATCTTTATA
Statistics
Matches: 151, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
132 5 0.03
133 97 0.64
134 18 0.12
135 7 0.05
136 22 0.15
137 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (132 bp):
AAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAAT
TACCAAAATACCCACAAAGGGTAAAATTATCAAAATACTCGAAGGCTAAAATTACTGAAATACCA
CT
Found at i:33956515 original size:26 final size:26
Alignment explanation
Indices: 33956331--33956533 Score: 124
Period size: 27 Copynumber: 7.6 Consensus size: 26
33956321 GAAATACATT
* * *
33956331 CTAAGTGTAAAAATTATCAAAATACCC
1 CTAAGGGT-AAAATGATCATAATACCC
* * *
33956358 TCGAAGGGTAAAATTATTGA-AATACCC
1 -CTAAGGGTAAAATGA-TCATAATACCC
* * * *
33956385 TCGAAGGGTAAAATTACCAAAATACCC
1 -CTAAGGGTAAAATGATCATAATACCC
* * *
33956412 ACGAAGGGTAAAATTATCAAAATACCC
1 -CTAAGGGTAAAATGATCATAATACCC
* * * *
33956439 TCGAAGGGTAAAATTACTGA-AATACCA
1 -CTAAGGGTAAAATGA-TCATAATACCC
*
33956466 CTAAGGGTAAAATTATCATAATACCC
1 CTAAGGGTAAAATGATCATAATACCC
* *
33956492 CTAAGGGTAAAATGATCTTTATACCC
1 CTAAGGGTAAAATGATCATAATACCC
33956518 CT-AGGAGATAAAATGA
1 CTAAGG-G-TAAAATGA
33956534 CTGTTATGGC
Statistics
Matches: 153, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.03
26 47 0.31
27 91 0.59
28 10 0.07
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (26 bp):
CTAAGGGTAAAATGATCATAATACCC
Found at i:33956540 original size:27 final size:26
Alignment explanation
Indices: 33956460--33956533 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
33956450 AATTACTGAA
* * * *
33956460 ATACCACTAAGGGTAAAATTATCATA
1 ATACCCCTAAGGGTAAAATGATCTTT
33956486 ATACCCCTAAGGGTAAAATGATCTTT
1 ATACCCCTAAGGGTAAAATGATCTTT
33956512 ATACCCCT-AGGAGATAAAATGA
1 ATACCCCTAAGG-G-TAAAATGA
33956534 CTGTTATGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 3 0.07
26 31 0.74
27 8 0.19
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGGGTAAAATGATCTTT
Found at i:33966234 original size:27 final size:27
Alignment explanation
Indices: 33966196--33966551 Score: 386
Period size: 27 Copynumber: 13.2 Consensus size: 27
33966186 GAATCATGGA
*
33966196 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
* *
33966223 AAAAATTACTGAAATACCCTCAAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
*
33966250 T-AAATTACTGAAATACCCTCAAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
** *
33966276 TAAAATTACAAAAATACCCTCAAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
* *
33966303 TAAAATTACTAAAATACCCTTGAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
*
33966330 TAAAATTA-TCGAAATACCCTTGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* *
33966357 TAGAAATTACCGAAATACCCTCAAAGGG
1 TA-AAATTACTGAAATACCCTCGAAGGG
* *
33966385 TAAAGTTA-TCGAAATACCCTCAAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* *
33966412 TAAAATT-GTCGAAATACTCTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* ** * *
33966439 TAAAATGACCAAAATACCCTCGAAAGT
1 TAAAATTACTGAAATACCCTCGAAGGG
33966466 TAAAATTA-TCGAAATACCCTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
*
33966493 TAAAATTA-TCGAAATACACTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
*
33966520 TAAAATTA-TCGAAATACCC-CTAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
33966546 TAAAAT
1 TAAAAT
33966552 GATCTTTATA
Statistics
Matches: 288, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
26 39 0.14
27 226 0.78
28 23 0.08
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.22
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGAAGGG
Found at i:33970618 original size:19 final size:19
Alignment explanation
Indices: 33970587--33970624 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33970577 AAAAAATCGG
*
33970587 TAAATAATATTTTATAAAA
1 TAAATAATATTTTAGAAAA
33970606 TAAA-AATATTTTTAGAAAA
1 TAAATAATA-TTTTAGAAAA
33970625 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TAAATAATATTTTAGAAAA
Found at i:33977716 original size:44 final size:44
Alignment explanation
Indices: 33977668--33977940 Score: 156
Period size: 44 Copynumber: 6.3 Consensus size: 44
33977658 ACTACTGCTT
*
33977668 AGGGAGATAAGATTTGCTTACTTAGTCTGCTCCACTACAACTTC
1 AGGGAGATAAGATTTGCTTACTTAGTCTGCTCCACTGCAACTTC
* * * ** *
33977712 AGGGAGACAAGACTAG---AC-GCGATCTGCT-CTCTGCAACTTC
1 AGGGAGATAAGATTTGCTTACTTAG-TCTGCTCCACTGCAACTTC
* * * * * * *
33977752 AGAGAGATAAGATCTGAGATT--TTAATCCGCTCCAGTGCGACTTC
1 AGGGAGATAAGAT-T-TGCTTACTTAGTCTGCTCCACTGCAACTTC
* * ** *
33977796 AGGGAGA-CAGAATTG-TCGGCTTTAATCTGCTCCACTGCAACTTC
1 AGGGAGATAAGATTTGCT-TAC-TTAGTCTGCTCCACTGCAACTTC
* *
33977840 AGGGAGATAAGATTTGC-CATCTTCAGTCTAC-CTCACTGCAAC-TC
1 AGGGAGATAAGATTTGCTTA-CTT-AGTCTGCTC-CACTGCAACTTC
* * * *
33977884 CGGAAGGATAAGATTTACTTACTTAGTCTACTCCACTGCAACTTC
1 AGGGA-GATAAGATTTGCTTACTTAGTCTGCTCCACTGCAACTTC
33977929 AGGGAGATAAGA
1 AGGGAGATAAGA
33977941 CTAGATGTGA
Statistics
Matches: 171, Mismatches: 37, Indels: 42
0.68 0.15 0.17
Matches are distributed among these distances:
40 22 0.13
41 10 0.06
42 3 0.02
43 8 0.05
44 86 0.50
45 41 0.24
46 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (44 bp):
AGGGAGATAAGATTTGCTTACTTAGTCTGCTCCACTGCAACTTC
Found at i:33978160 original size:141 final size:141
Alignment explanation
Indices: 33977906--33978187 Score: 449
Period size: 141 Copynumber: 2.0 Consensus size: 141
33977896 ATTTACTTAC
* * *
33977906 TTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTACTCTCTGCAACTTTAG
1 TTAGTCTACTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTACTCTCTGCAACTTCAG
*
33977971 AAAGATAAGATCTGAGACTTTAATCCACTCCACCGCAATTTCAGGGAGATAGGATTGTCGGTTTT
66 AAAGATAAGATCTGAGACTTTAATCCACTCCACCGCAATTTCAGGGAGATAGGATTGTCGGCTTT
33978036 AATCTGCTCCA
131 AATCTGCTCCA
* * *
33978047 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGTAACTTCAG
1 TTAGTCTACTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTACTCTCTGCAACTTCAG
* * * *
33978112 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTT-AGGGAGATAGGATTGTCGGCTT
66 AAAGATAAGATCTGAGACTTTAATCCACTCCACCGCAA-TTTCAGGGAGATAGGATTGTCGGCTT
33978176 TAATCTGCTCCA
130 TAATCTGCTCCA
33978188 CTACAACTTC
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 126 0.98
142 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (141 bp):
TTAGTCTACTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTACTCTCTGCAACTTCAG
AAAGATAAGATCTGAGACTTTAATCCACTCCACCGCAATTTCAGGGAGATAGGATTGTCGGCTTT
AATCTGCTCCA
Found at i:33978240 original size:45 final size:43
Alignment explanation
Indices: 33978104--33978298 Score: 153
Period size: 44 Copynumber: 4.4 Consensus size: 43
33978094 TGCTCTCTGT
* ** * * * *
33978104 AACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGC
1 AACTTCAGGGAGATAAGAT-TGTCATCTTAGTCTGCTCCACTAC
* * ** *
33978148 AACTTTAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTAC
1 AACTTCAGGGAGATAAGATTGTCATC-TTAGTCTGCTCCACTAC
*
33978192 AACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGC-CTCACTGC
1 AACTTCAGGGAGATAAGA-TTGTCATCTT-AGTCTGCTC-CACTAC
* *
33978237 AACTTTA-GGAGGATAAGACTTG-CTTACTTAGTCTGCTCCACTAC
1 AACTTCAGGGA-GATAAGA-TTGTCAT-CTTAGTCTGCTCCACTAC
*
33978281 AACTTCAAGGAGATAAGA
1 AACTTCAGGGAGATAAGA
33978299 CTAGATGTGA
Statistics
Matches: 122, Mismatches: 21, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.02
44 80 0.66
45 40 0.33
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
AACTTCAGGGAGATAAGATTGTCATCTTAGTCTGCTCCACTAC
Found at i:33978285 original size:44 final size:45
Alignment explanation
Indices: 33978179--33978300 Score: 128
Period size: 45 Copynumber: 2.7 Consensus size: 45
33978169 TCGGCTTTAA
* *
33978179 TCTGCTCCACTACAACTTCAGG-GAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTACAACTTAAGGAG-GATAAGACTTGTCATCTTCAG
* * *
33978224 TCTGC-CTCACTGCAACTTTAGGAGGATAAGACTTG-CTTACTT-AG
1 TCTGCTC-CACTACAACTTAAGGAGGATAAGACTTGTCAT-CTTCAG
33978268 TCTGCTCCACTACAACTTCAAGGA-GATAAGACT
1 TCTGCTCCACTACAACTT-AAGGAGGATAAGACT
33978301 AGATGTGATC
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
44 29 0.44
45 36 0.55
46 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTACAACTTAAGGAGGATAAGACTTGTCATCTTCAG
Found at i:33978353 original size:358 final size:358
Alignment explanation
Indices: 33977689--33978383 Score: 1124
Period size: 358 Copynumber: 1.9 Consensus size: 358
33977679 ATTTGCTTAC
*
33977689 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAGACTAGACGCGATCTGCTCTCTGCAACTTCAG
1 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
* *
33977754 AGAGATAAGATCTGAGATTTTAATCCGCTCCAGTGCGACTTCAGGGAGACAGAATTGTCGGCTTT
66 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGACAGAATTGTCGGCTTT
*
33977819 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
131 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
* * * *
33977884 CGGAAGGATAAGATTTACTTACTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGT
196 AGGAAGGATAAGACTTACTTACTTAGTCTACTCCACTACAACTTCAAGGAGATAAGACTAGATGT
* *
33977949 GATCTACTCTCTGCAACTTTAGAAAGATAAGATCTGAGACTTTAATCCACTCCACCGCAAT-TTC
261 GATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCACTCCACCGC-ATCTTC
33978013 AGGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
325 AGGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
* * * *
33978047 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGTAACTTCAG
1 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
* * *
33978112 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGTCGGCTTT
66 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGACAGAATTGTCGGCTTT
* *
33978177 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTGCAACTT
131 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAAC-T
* * *
33978242 TAGG-AGGATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAAGGAGATAAGACTAGATG
195 CAGGAAGGATAAGACTTACTTACTTAGTCTACTCCACTACAACTTCAAGGAGATAAGACTAGATG
* * * *
33978306 TGATCTACTCTCTACAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCATCTTC
260 TGATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCACTCCACCGCATCTTC
33978371 AGGGAGATAGGAT
325 AGGGAGATAGGAT
33978384 CCCGACCACT
Statistics
Matches: 309, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
357 2 0.01
358 304 0.98
359 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (358 bp):
TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGACAGAATTGTCGGCTTT
AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
AGGAAGGATAAGACTTACTTACTTAGTCTACTCCACTACAACTTCAAGGAGATAAGACTAGATGT
GATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCACTCCACCGCATCTTCA
GGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
Found at i:33991192 original size:21 final size:22
Alignment explanation
Indices: 33991151--33991193 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33991141 TTCATATGTA
33991151 AAATAAAAATATACAAAAAAAT
1 AAATAAAAATATACAAAAAAAT
*
33991173 AAATAAATATA-ACAACAAAAA
1 AAATAAAAATATACAA-AAAAA
33991194 ACAAGCTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (22 bp):
AAATAAAAATATACAAAAAAAT
Found at i:34022120 original size:25 final size:23
Alignment explanation
Indices: 34022083--34022218 Score: 103
Period size: 25 Copynumber: 5.5 Consensus size: 23
34022073 TATCGATTGC
*
34022083 AGCTCGTGAGAGCTTACCAATTCTT
1 AGCTCGT-AGAGCTTACCGATT-TT
* *
34022108 AGCTCGTATGAGCTTATCGATTTC
1 AGCTCGTA-GAGCTTACCGATTTT
*
34022132 AGCTCAAG-AGAGCTTACCAATTTT
1 AGCTC--GTAGAGCTTACCGATTTT
*
34022156 GAGCTCGTATGAGCTTACCGATTGT
1 -AGCTCGTA-GAGCTTACCGATTTT
* * *
34022181 AGTTCGTGAGAGCTTACTGATTCTC
1 AGCTCGT-AGAGCTTACCGATT-TT
34022206 AGCTCGTATGAGC
1 AGCTCGTA-GAGC
34022219 ATAATTTGGC
Statistics
Matches: 89, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
23 1 0.01
24 39 0.44
25 48 0.54
26 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (23 bp):
AGCTCGTAGAGCTTACCGATTTT
Found at i:34022144 original size:49 final size:49
Alignment explanation
Indices: 34022072--34022218 Score: 190
Period size: 49 Copynumber: 3.0 Consensus size: 49
34022062 TCATTAGGGA
*
34022072 TTATCGATTGCAGCTCGTGAGAGCTTACCAATTCTTAGCTCGTATGAGC
1 TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTTAGCTCGTATGAGC
**
34022121 TTATCGATTTCAGCTCAAGAGAGCTTACCAATT-TTGAGCTCGTATGAGC
1 TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTT-AGCTCGTATGAGC
* * ** *
34022170 TTACCGATTGT-AGTTCGTGAGAGCTTACTGATTCTCAGCTCGTATGAGC
1 TTATCGATT-TCAGCTCGTGAGAGCTTACCAATTCTTAGCTCGTATGAGC
34022219 ATAATTTGGC
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
48 2 0.02
49 81 0.95
50 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (49 bp):
TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTTAGCTCGTATGAGC
Found at i:34027266 original size:20 final size:20
Alignment explanation
Indices: 34027227--34027266 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
34027217 GATCTAAAAT
* *
34027227 AATAATTTCATTCAATTAAC
1 AATAATTTCATTAAAGTAAC
34027247 AATAATTTCATTAAAGTAAC
1 AATAATTTCATTAAAGTAAC
34027267 TAATTCTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (20 bp):
AATAATTTCATTAAAGTAAC
Found at i:34029655 original size:42 final size:42
Alignment explanation
Indices: 34029591--34029742 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
34029581 TAACCGTTAC
* * *
34029591 TCGGTGGAATCAGCACCTAGCAACCACCTTTAGAATCAATAAT
1 TCGG-GGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
* * * * **
34029634 TCAGGGAATCAGCACTTAGCAACC-CCTCTCACAATCAAGGAT
1 TCGGGGAATCAACACTTAGCAACCACCT-TTAGAATCAACAAT
*
34029676 ACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
1 TCGG-GGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
34029719 TCGGGGAATCAACACTTAGCAACC
1 TCGGGGAATCAACACTTAGCAACC
34029743 CCTCGGGGAA
Statistics
Matches: 92, Mismatches: 14, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
41 3 0.03
42 51 0.55
43 35 0.38
44 3 0.03
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (42 bp):
TCGGGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
Found at i:34029741 original size:26 final size:26
Alignment explanation
Indices: 34029712--34029764 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
34029702 CCTTTAGAAT
*
34029712 CAACAATTCGGGGAATCAACACTTAG
1 CAACAACTCGGGGAATCAACACTTAG
** **
34029738 CAACCCCTCGGGGAATCTGCACTTAG
1 CAACAACTCGGGGAATCAACACTTAG
34029764 C
1 C
34029765 GACCCCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (26 bp):
CAACAACTCGGGGAATCAACACTTAG
Found at i:34029769 original size:26 final size:26
Alignment explanation
Indices: 34029719--34029771 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34029709 AATCAACAAT
34029719 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
** *
34029745 TCGGGGAATCTGCACTTAGCGACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
34029771 T
1 T
34029772 TTTACAGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:34030019 original size:15 final size:16
Alignment explanation
Indices: 34029990--34030021 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34029980 AATCCAGTCC
34029990 AAAAATCACATTTTTG
1 AAAAATCACATTTTTG
*
34030006 AAAAATTACATTTTTG
1 AAAAATCACATTTTTG
34030022 CCCCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATCACATTTTTG
Found at i:34036194 original size:10 final size:10
Alignment explanation
Indices: 34036179--34036210 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
34036169 CTGCAAATCT
*
34036179 ATCAAAAATA
1 ATCAAAATTA
34036189 ATCAAAATTA
1 ATCAAAATTA
34036199 ATCAAAATTA
1 ATCAAAATTA
34036209 AT
1 AT
34036211 TATAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:34043446 original size:26 final size:26
Alignment explanation
Indices: 34043412--34043518 Score: 126
Period size: 26 Copynumber: 4.1 Consensus size: 26
34043402 AACACACCAA
*
34043412 TATCACAGCAAAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
*
34043438 TAACGCAGCAAAGCTGCCAGTAAT-AG
1 TATCGCAGCAAAGCTGCCAGT-ATCAG
* ** * *
34043464 TATCACAATAGAGCCGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
*
34043490 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
34043516 TAT
1 TAT
34043519 TTGTGGCAAA
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.03
26 61 0.94
27 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTATCAG
Found at i:34043983 original size:81 final size:81
Alignment explanation
Indices: 34043727--34044041 Score: 370
Period size: 80 Copynumber: 3.9 Consensus size: 81
34043717 TACCCCTCTG
* ** *
34043727 GGGTATTTCGATAATTTTACCCTTCGAGGGCATTTTGGTAATTTTACCCTTCGAGGGTAATTT-G
1 GGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCGAGGGT-ATTTCG
* * **
34043791 GTAATTTTTCT-TTTTT
65 ATAATTTTACTCTTCAT
* * * * *
34043807 AGGTATTTC-AGTAATTTTACCTTTTGAGGGTATTTCAGTAATTTTACCCTTC-AGGGTATTTAG
1 GGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCG
* *
34043870 ATAATTTTACCCTTTGA-
65 ATAATTTTACTC-TTCAT
* * * * * *
34043887 GGGTATTTTGGTAATTTTACCCTTCAAGGGTATTTTAGTAATTTTTCCCATCGAGGGTATTTCGG
1 GGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGA
34043952 TAATTTTACTCTTCAT
66 TAATTTTACTCTTCAT
*
34043968 GGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGA
34044033 TAATTTTAC
66 TAATTTTAC
34044042 CCACGAATCA
Statistics
Matches: 197, Mismatches: 31, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
78 4 0.02
79 15 0.08
80 89 0.45
81 89 0.45
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGA
TAATTTTACTCTTCAT
Found at i:34044044 original size:27 final size:27
Alignment explanation
Indices: 34043713--34044043 Score: 336
Period size: 27 Copynumber: 12.3 Consensus size: 27
34043703 TATAACAGTC
*
34043713 ATTTTACCCCTCTG-GGGTATTTCGATA
1 ATTTTACCCTTC-GAGGGTATTTCGATA
* * *
34043740 ATTTTACCCTTCGAGGGCATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
34043767 ATTTTACCCTTCGAGGGTAATTT-GGTA
1 ATTTTACCCTTCGAGGGT-ATTTCGATA
* ** **
34043794 ATTTTTCTTTTTTA-GGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
34043820 ATTTTACCTTTTGAGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
*
34043847 ATTTTACCCTTC-AGGGTATTTAGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
34043873 ATTTTACCCTTTGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
34043900 ATTTTACCCTTCAAGGGTATTT-TAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* * *
34043927 ATTTTTCCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
34043954 ATTTTACTCTTC-ATGGGTATTTCGATA
1 ATTTTACCCTTCGA-GGGTATTTCGATA
*
34043981 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
34044008 ATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
34044035 ATTTTACCC
1 ATTTTACCC
34044044 ACGAATCACA
Statistics
Matches: 256, Mismatches: 37, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.02
26 40 0.16
27 207 0.81
28 5 0.02
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:34051086 original size:28 final size:28
Alignment explanation
Indices: 34051046--34051100 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
34051036 CAGTAGCAGT
* * *
34051046 GTGTGGGCCTTAGCCCAAAACAGTAATA
1 GTGTGGACCTTAGCACAAAACAATAATA
34051074 GTGTGGACCTTAGCACAAAACAATAAT
1 GTGTGGACCTTAGCACAAAACAATAAT
34051101 CAATACAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (28 bp):
GTGTGGACCTTAGCACAAAACAATAATA
Found at i:34051237 original size:26 final size:25
Alignment explanation
Indices: 34051208--34051288 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 25
34051198 AACACACCAA
34051208 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCACA-CAAAGCTGCCAGTAACAG
* *
34051234 TATCACA-ATAGAGCTACCAGTATCAG
1 TATCACACA-A-AGCTGCCAGTAACAG
* * *
34051260 TATCGCTACAAAGCAGCCAGTAATAG
1 TATCAC-ACAAAGCTGCCAGTAACAG
34051286 TAT
1 TAT
34051289 TTGTGGCAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 39 0.89
27 2 0.05
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.21
Consensus pattern (25 bp):
TATCACACAAAGCTGCCAGTAACAG
Found at i:34051497 original size:27 final size:27
Alignment explanation
Indices: 34051467--34051573 Score: 74
Period size: 27 Copynumber: 4.0 Consensus size: 27
34051457 TTTCATCTCC
*
34051467 TAGGGGTATAACGATTATTTTACCCTT
1 TAGGGGTATAACGATAATTTTACCCTT
** *
34051494 TA-GGGTATTTCGGTAATTTTACCCTT
1 TAGGGGTATAACGATAATTTTACCCTT
* * ** *
34051520 CAGGGGCATTTCGGTAATTTTACCC-T
1 TAGGGGTATAACGATAATTTTACCCTT
* ** *
34051546 TCGAGGGTATTTCGATAATTTTTCCCTT
1 TAG-GGGTATAACGATAATTTTACCCTT
34051574 CGAGGGTATT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
26 23 0.35
27 42 0.64
28 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
TAGGGGTATAACGATAATTTTACCCTT
Found at i:34051617 original size:80 final size:81
Alignment explanation
Indices: 34051527--34051731 Score: 286
Period size: 80 Copynumber: 2.5 Consensus size: 81
34051517 CTTCAGGGGC
* * * * *
34051527 ATTTCGGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTTCCCTTCGAGGGTATTTTAATAAA
1 ATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGAGTATTTCAATAAA
34051592 TTTACCCTTT-AGGGT
66 TTTACCCTTTGAGGGT
* * *
34051607 ATTTTAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGAGTATTTCAGTAAT
1 ATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGAGTATTTCAATAAA
*
34051672 TTTACCCTTTGGGGGT
66 TTTACCCTTTGAGGGT
* * * *
34051688 ATTTCAATAATTTAACCCTTCGACGGTATTTCGGTAATTTTACC
1 ATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACC
34051732 TTTTGGGGGT
Statistics
Matches: 110, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 67 0.61
81 43 0.39
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (81 bp):
ATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGAGTATTTCAATAAA
TTTACCCTTTGAGGGT
Found at i:34051657 original size:107 final size:106
Alignment explanation
Indices: 34051485--34051786 Score: 358
Period size: 107 Copynumber: 2.8 Consensus size: 106
34051475 TAACGATTAT
* *
34051485 TTTACCCTTTAGGGTATTTCGGTAATTTTACCCTTC-AGGGGCATTTCGGTAATTTTACCCTTCG
1 TTTACCCTTTAGGGTATTTCGGTAATTTTACCCTTCGA-GGGTATTTCGGTAATTTTACCCATCG
* *
34051549 AGGGTATTTC-GATAATTTTTCCCTTCGAGGGTATTTTAATAAA
65 AGGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCAAT-AA
** *
34051592 TTTACCCTTTAGGGTATTTTAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGA
1 TTTACCCTTTAGGGTATTTCGGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGA
* * *
34051657 GAGTATTTCAGTAATTTTACCCTTTGGGGGTATTTCAATAA
66 GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAATAA
* * * * * * *
34051698 TTTAACCCTTCGACGGTATTTCGGTAATTTTACCTTTTGGGGGTATAAT-GGTAATGTTACCCAT
1 TTT-ACCCTT-TAGGGTATTTCGGTAATTTTACCCTTCGAGGGTAT-TTCGGTAATTTTACCCAT
* *
34051762 TGAGGGTATTTCAGTGATTTTACCC
63 CGAGGGTATTTCAGTAATTTTACCC
34051787 ACAAATCGCA
Statistics
Matches: 167, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
106 5 0.03
107 96 0.57
108 65 0.39
109 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (106 bp):
TTTACCCTTTAGGGTATTTCGGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGA
GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAATAA
Found at i:34051742 original size:27 final size:27
Alignment explanation
Indices: 34051483--34051786 Score: 294
Period size: 27 Copynumber: 11.3 Consensus size: 27
34051473 TATAACGATT
*
34051483 ATTTTACCCTT-TAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
34051509 ATTTTACCCTTC-AGGGGCATTTCGGTA
1 ATTTTACCCTTCGA-GGGTATTTCGGTA
*
34051536 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* ***
34051563 ATTTTTCCCTTCGAGGGTATTTTAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * **
34051590 AATTTACCCTT-TAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
34051616 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
34051643 ATTTTACCCATCGAGAGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * **
34051670 ATTTTACCCTTTGGGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
34051697 ATTTAACCCTTCGACGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * *
34051724 ATTTTACCTTTTGGGGGTATAAT-GGTA
1 ATTTTACCCTTCGAGGGTAT-TTCGGTA
* * *
34051751 ATGTTACCCATT-GAGGGTATTTCAGTG
1 ATTTTACCC-TTCGAGGGTATTTCGGTA
34051778 ATTTTACCC
1 ATTTTACCC
34051787 ACAAATCGCA
Statistics
Matches: 228, Mismatches: 43, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
26 36 0.16
27 188 0.82
28 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:34051752 original size:81 final size:80
Alignment explanation
Indices: 34051478--34051786 Score: 327
Period size: 81 Copynumber: 3.8 Consensus size: 80
34051468 AGGGGTATAA
* * * * * *
34051478 CGATTATTTTACCCTT-TAGGGTATTTCGGTAATTTTACCC-TTCAGGGGCATTTCGGTAATTTT
1 CGATAATTTTACCCTTCGAGGGTATTT-AGTAATTTTACCCTTTGA-GGGTATTTCAGTAATTTT
34051541 ACCCTTCGAGGGTATTT
64 ACCCTTCGAGGGTATTT
* * * *
34051558 CGATAATTTTTCCCTTCGAGGGTATTTTAATAAATTTACCCTTT-AGGGTATTTTAGTAATTTTA
1 CGATAATTTTACCCTTCGAGGGTA-TTTAGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTA
34051622 CCCTTCGAGGGTATTT
65 CCCTTCGAGGGTATTT
* * * * *
34051638 CGATAATTTTACCCATCGAGAGTATTTCAGTAATTTTACCCTTTGGGGGTATTTCAATAATTTAA
1 CGATAATTTTACCCTTCGAGGGTATTT-AGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTA
*
34051703 CCCTTCGACGGTATTT
65 CCCTTCGAGGGTATTT
* * * * * * * * *
34051719 CGGTAATTTTACCTTTTGGGGGTATAATGGTAATGTTACCCATTGAGGGTATTTCAGTGATTTTA
1 CGATAATTTTACCCTTCGAGGGTAT-TTAGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTA
34051784 CCC
65 CCC
34051787 ACAAATCGCA
Statistics
Matches: 190, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
79 3 0.02
80 81 0.43
81 100 0.53
82 6 0.03
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (80 bp):
CGATAATTTTACCCTTCGAGGGTATTTAGTAATTTTACCCTTTGAGGGTATTTCAGTAATTTTAC
CCTTCGAGGGTATTT
Found at i:34056933 original size:25 final size:25
Alignment explanation
Indices: 34056904--34056958 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
34056894 AGCTAAAGAC
*
34056904 CGGTATGCTCTCACGAGCTATGAAT
1 CGGTATGCTCTCACGAGCTATAAAT
* *
34056929 TGGTATGCTCTTACGAGCTATAAAT
1 CGGTATGCTCTCACGAGCTATAAAT
34056954 CGGTA
1 CGGTA
34056959 ACCCTAATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (25 bp):
CGGTATGCTCTCACGAGCTATAAAT
Found at i:34057413 original size:19 final size:19
Alignment explanation
Indices: 34057389--34057427 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
34057379 AATTTCATAA
* *
34057389 ATTATACCATAGATTTATC
1 ATTATAACATAAATTTATC
34057408 ATTATAACATAAATTTATC
1 ATTATAACATAAATTTATC
34057427 A
1 A
34057428 CATTTTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTATAACATAAATTTATC
Found at i:34058619 original size:35 final size:35
Alignment explanation
Indices: 34058490--34058642 Score: 114
Period size: 35 Copynumber: 4.4 Consensus size: 35
34058480 CGCATGTTTC
* **
34058490 TGTTAAGCATGCCA-TAATACTGATTCTGATTAATA
1 TGTTAAGCATGCCACT-ATACTGATTTTGATTAGCA
* ** * *
34058525 TCTTAAGCATGGTAGTATACTGATTCTT-ATTCGCA
1 TGTTAAGCATGCCACTATACTGATT-TTGATTAGCA
** * *
34058560 TGTTAAGCATTTCACTTTACTGATTTTGATTAGCG
1 TGTTAAGCATGCCACTATACTGATTTTGATTAGCA
* * *
34058595 TGTTAAGCATGCCACTATATTGATTCTGAATCA-CA
1 TGTTAAGCATGCCACTATACTGATTTTG-ATTAGCA
*
34058630 TGTAAAGCATGCC
1 TGTTAAGCATGCC
34058643 TATTGAAACT
Statistics
Matches: 91, Mismatches: 23, Indels: 8
0.75 0.19 0.07
Matches are distributed among these distances:
34 2 0.02
35 84 0.92
36 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (35 bp):
TGTTAAGCATGCCACTATACTGATTTTGATTAGCA
Found at i:34063009 original size:26 final size:26
Alignment explanation
Indices: 34062980--34063036 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34062970 AAGTGTTTTG
*
34062980 AAACTGATACATGTTATGATAATCTA
1 AAACTGATAAATGTTATGATAATCTA
*
34063006 AAACTGATAAATGTTATGATATTCTA
1 AAACTGATAAATGTTATGATAATCTA
34063032 AAACT
1 AAACT
34063037 ACTGTAGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (26 bp):
AAACTGATAAATGTTATGATAATCTA
Found at i:34068197 original size:93 final size:93
Alignment explanation
Indices: 34068084--34068255 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
34068074 CGCCCATAAG
* *
34068084 CGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34068149 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
34068177 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34068242 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
34068256 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:34068252 original size:46 final size:46
Alignment explanation
Indices: 34068077--34068252 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
34068067 TGTAACCCGC
* * *
34068077 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
34068123 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
34068173 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
34068216 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
34068253 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34075652 original size:46 final size:46
Alignment explanation
Indices: 34075585--34075713 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
34075575 TGTAACCCGC
* * *
34075585 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTCGC-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TTCGCAT
34075631 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
34075677 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34075714 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 5 0.06
46 74 0.94
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34081284 original size:38 final size:40
Alignment explanation
Indices: 34081241--34081330 Score: 123
Period size: 38 Copynumber: 2.3 Consensus size: 40
34081231 CTCCTCCGTT
*
34081241 CAAATGCCTTCGGGACATAGCC-CGG-TATAGAACTCGCA
1 CAAATGCCTTCGGGACATAACCGCGGATATAGAACTCGCA
* * *
34081279 CAAATGCCTTCGGGACTTAACCGCGGATTTAGTACTCGCA
1 CAAATGCCTTCGGGACATAACCGCGGATATAGAACTCGCA
34081319 CAAATG-CTTCGG
1 CAAATGCCTTCGG
34081331 ACTTACCCGG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
38 20 0.43
39 9 0.20
40 17 0.37
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCGCGGATATAGAACTCGCA
Found at i:34081358 original size:34 final size:39
Alignment explanation
Indices: 34081241--34081402 Score: 116
Period size: 38 Copynumber: 4.3 Consensus size: 39
34081231 CTCCTCCGTT
* *
34081241 CAAATGCCTTCGGGACATAGCC-CGG-TATAG-AACTCGCA
1 CAAATGCCTTCGGGACTTAACCGCGGAT-TAGTAA-TCGCA
*
34081279 CAAATGCCTTCGGGACTTAACCGCGGATTTAGTACTCGCA
1 CAAATGCCTTCGGGACTTAACCGCGGA-TTAGTAATCGCA
34081319 CAAATG-CTTC-GGACTT-ACC-CGG-TTAGTAATC-CA
1 CAAATGCCTTCGGGACTTAACCGCGGATTAGTAATCGCA
* * *
34081352 CTAAATGACC-TC-GG-CTTAGCCG-GAATTAGTATCTCGCA
1 C-AAATG-CCTTCGGGACTTAACCGCGGATTAGTA-ATCGCA
34081390 CAATATGCCTTCG
1 CAA-ATGCCTTCG
34081403 ATCTTAGTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 29
0.74 0.05 0.21
Matches are distributed among these distances:
33 3 0.03
34 16 0.16
35 7 0.07
36 10 0.10
37 9 0.09
38 34 0.33
39 7 0.07
40 14 0.14
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCGCGGATTAGTAATCGCA
Found at i:34089364 original size:80 final size:80
Alignment explanation
Indices: 34089271--34089495 Score: 296
Period size: 80 Copynumber: 2.8 Consensus size: 80
34089261 GCTCCTCGTT
* *
34089271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
34089336 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
34089351 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
34089414 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
34089430 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
34089493 GGA
64 GGA
34089496 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 4 0.03
79 55 0.43
80 66 0.52
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:34089455 original size:119 final size:120
Alignment explanation
Indices: 34089271--34089495 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
34089261 GCTCCTCGTT
*
34089271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
34089336 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
* * **
34089391 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
34089453 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
34089496 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
Found at i:34089495 original size:40 final size:41
Alignment explanation
Indices: 34089271--34089495 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 41
34089261 GCTCCTCGTT
* *
34089271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* *
34089311 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
34089351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
*
34089391 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* * * *
34089430 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
34089471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34089496 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:34107445 original size:20 final size:20
Alignment explanation
Indices: 34107403--34107443 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
34107393 TACAACACAA
* *
34107403 TTCAATTTTATATTGAATAT
1 TTCAATTTTATACTCAATAT
34107423 TTCAATTTT-TACTCAATAT
1 TTCAATTTTATACTCAATAT
34107442 TT
1 TT
34107444 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTTATACTCAATAT
Found at i:34107619 original size:12 final size:12
Alignment explanation
Indices: 34107604--34107628 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34107594 ATTACTCAAA
34107604 ATTTTACAATTT
1 ATTTTACAATTT
34107616 ATTTTACAATTT
1 ATTTTACAATTT
34107628 A
1 A
34107629 ATTCTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTACAATTT
Found at i:34112670 original size:9 final size:8
Alignment explanation
Indices: 34112627--34112668 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
34112617 AACTAAAATT
*
34112627 AATAATAA
1 AATAAAAA
**
34112635 AATAAACG
1 AATAAAAA
34112643 AATAAAAA
1 AATAAAAA
34112651 AATAAAAA
1 AATAAAAA
34112659 AATAAAAA
1 AATAAAAA
34112667 AA
1 AA
34112669 ATTTAAAGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:34114667 original size:29 final size:29
Alignment explanation
Indices: 34114625--34114690 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
34114615 GACATCCCTT
34114625 GAGCACATATCATACAAGTATTGAATTTG
1 GAGCACATATCATACAAGTATTGAATTTG
*
34114654 GAGCACATATCATACAAGTATTGACTTTG
1 GAGCACATATCATACAAGTATTGAATTTG
34114683 GAGCACAT
1 GAGCACAT
34114691 GACTAGGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (29 bp):
GAGCACATATCATACAAGTATTGAATTTG
Found at i:34116284 original size:22 final size:22
Alignment explanation
Indices: 34116234--34116284 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
34116224 AAAAATACCC
34116234 AAAATAAATAGGAAGAGAAAAG
1 AAAATAAATAGGAAGAGAAAAG
**
34116256 AGGATAAATAGGAAGAGAAAAG
1 AAAATAAATAGGAAGAGAAAAG
34116278 AAAATAA
1 AAAATAA
34116285 GAAAAAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.10
Consensus pattern (22 bp):
AAAATAAATAGGAAGAGAAAAG
Found at i:34123874 original size:28 final size:28
Alignment explanation
Indices: 34123834--34123890 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
34123824 CAGTATCAGT
* *
34123834 ACAGTGTGGGCCTTAGCCCATTACAATA
1 ACAGTGTGAGCCTTAGCCCAATACAATA
34123862 ACAGTGTGAGCCTTAGCCCAATACAATA
1 ACAGTGTGAGCCTTAGCCCAATACAATA
34123890 A
1 A
34123891 TCAATACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (28 bp):
ACAGTGTGAGCCTTAGCCCAATACAATA
Found at i:34124029 original size:26 final size:26
Alignment explanation
Indices: 34124000--34124072 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
34123990 CACCAATATC
* ** *
34124000 GCAGTAAAGCTGCCAGTAATTGTGAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
*
34124026 GCAGCAAAGTTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
*
34124052 GCAGGAAAGCTGCCAGTAACA
1 GCAGCAAAGCTGCCAGTAACA
34124073 ATATATGTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:34124395 original size:54 final size:54
Alignment explanation
Indices: 34124252--34124408 Score: 244
Period size: 53 Copynumber: 2.9 Consensus size: 54
34124242 TATAACAATC
* * **
34124252 ATTTTACCCTTAGGGGGTAATTCAATAATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
*
34124306 ATTTTA-CCTTTGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
* *
34124359 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCAAGGGTATTTC
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTC
34124409 AGTTATTTGC
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 48 0.51
54 47 0.49
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
Found at i:34124397 original size:27 final size:27
Alignment explanation
Indices: 34124252--34124408 Score: 208
Period size: 27 Copynumber: 5.9 Consensus size: 27
34124242 TATAACAATC
* * * *
34124252 ATTTTACCCTTAGGGGGTAATTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
34124279 ATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
34124306 ATTTTA-CCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
34124332 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
34124359 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
34124386 ATTTTACCCTTCAAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
34124409 AGTTATTTGC
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
26 24 0.21
27 91 0.79
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:34127872 original size:26 final size:26
Alignment explanation
Indices: 34127807--34127876 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
34127797 CTTTACATCG
*
34127807 TTGCTCACACG-AGCTGGGAAATGGGT
1 TTGCTCACA-GAAGCTGTGAAATGGGT
* * * * *
34127833 TTTCCCATACAAGCTGTGAAGTGGGT
1 TTGCTCACAGAAGCTGTGAAATGGGT
34127859 TTGCTCACAGAAGCTGTG
1 TTGCTCACAGAAGCTGTG
34127877 GGTCAAAATG
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (26 bp):
TTGCTCACAGAAGCTGTGAAATGGGT
Found at i:34129610 original size:16 final size:16
Alignment explanation
Indices: 34129585--34129615 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34129575 AAATAAATAA
34129585 ATTCAATCTATTTAAT
1 ATTCAATCTATTTAAT
*
34129601 ATTCATTCTATTTAA
1 ATTCAATCTATTTAA
34129616 CTCAATCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTCAATCTATTTAAT
Found at i:34143608 original size:13 final size:13
Alignment explanation
Indices: 34143590--34143619 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
34143580 TATTTCAGGT
34143590 GTTTTGCATTTTG
1 GTTTTGCATTTTG
34143603 GTTTTGCATTTTG
1 GTTTTGCATTTTG
34143616 GTTT
1 GTTT
34143620 ATTTTTCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.23, T:0.63
Consensus pattern (13 bp):
GTTTTGCATTTTG
Found at i:34145926 original size:27 final size:27
Alignment explanation
Indices: 34145896--34146073 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34145886 ATATTGAGTC
* * * *
34145896 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
34145923 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34145950 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
34145978 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
34146005 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
34146032 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34146059 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34146074 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:34146035 original size:82 final size:81
Alignment explanation
Indices: 34145917--34146072 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34145907 TGCTATATAA
* *
34145917 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34145982 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34145999 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34146063 CACTTAGTGC
65 CACTTAGTGC
34146073 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34154043 original size:27 final size:27
Alignment explanation
Indices: 34154013--34154190 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34154003 ATATTGAGTC
* * * *
34154013 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
34154040 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34154067 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
34154095 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
34154122 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
34154149 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
34154176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34154191 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:34154152 original size:82 final size:81
Alignment explanation
Indices: 34154034--34154189 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34154024 TGCTATATAA
* *
34154034 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
34154099 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34154116 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
34154180 CACTTAGTGC
65 CACTTAGTGC
34154190 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34169485 original size:14 final size:14
Alignment explanation
Indices: 34169466--34169493 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34169456 TAAATTTATA
34169466 TTTAATATTTCATT
1 TTTAATATTTCATT
34169480 TTTAATATTTCATT
1 TTTAATATTTCATT
34169494 AATAAATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTAATATTTCATT
Found at i:34169963 original size:19 final size:19
Alignment explanation
Indices: 34169941--34169978 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34169931 TTAATCATCC
34169941 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
34169960 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
34169979 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:34188623 original size:20 final size:20
Alignment explanation
Indices: 34188598--34188672 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
34188588 GATGTAAAAA
*
34188598 AGGGGCACCAAAGTGCAATC
1 AGGGGCACCAGAGTGCAATC
* * *
34188618 AGGGGCATCGGAGTGCAATT
1 AGGGGCACCAGAGTGCAATC
* * * *
34188638 AAGAGCACGAGTGTGCAATC
1 AGGGGCACCAGAGTGCAATC
*
34188658 AGGGGCACCCGAGTG
1 AGGGGCACCAGAGTG
34188673 TAGTCAAGGG
Statistics
Matches: 39, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.29, C:0.21, G:0.36, T:0.13
Consensus pattern (20 bp):
AGGGGCACCAGAGTGCAATC
Found at i:34188693 original size:40 final size:40
Alignment explanation
Indices: 34188610--34188706 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
34188600 GGGCACCAAA
* * * *
34188610 GTGCAATCAGGGGCATCGGAGTGCAATTAAGAGCACGAGT
1 GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
* * * *
34188650 GTGCAATCAGGGGCACCCGAGTGTAGTCAAGGGGACGAAT
1 GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
34188690 GTGCTAA-CAGGGGCACC
1 GTGC-AATCAGGGGCACC
34188707 GAAGTGTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.36, T:0.15
Consensus pattern (40 bp):
GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
Found at i:34188733 original size:40 final size:40
Alignment explanation
Indices: 34188689--34188764 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
34188679 AGGGGACGAA
* *
34188689 TGTGCTAACAGGGGCACCGAAGTGTTTATAGGGGCACAGT
1 TGTGCAAACAGGGACACCGAAGTGTTTATAGGGGCACAGT
**
34188729 TGTGCAAACAGGGACATTGAAGTGTTTATAGGGGCA
1 TGTGCAAACAGGGACACCGAAGTGTTTATAGGGGCA
34188765 TTGGGGTGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (40 bp):
TGTGCAAACAGGGACACCGAAGTGTTTATAGGGGCACAGT
Found at i:34188854 original size:13 final size:13
Alignment explanation
Indices: 34188836--34188860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34188826 ATAAAATTCA
34188836 TTTCAATTCCATT
1 TTTCAATTCCATT
34188849 TTTCAATTCCAT
1 TTTCAATTCCAT
34188861 GAATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAATTCCATT
Found at i:34199114 original size:11 final size:11
Alignment explanation
Indices: 34199083--34199107 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34199073 CCACTATTGT
34199083 CGAACCATCAC
1 CGAACCATCAC
34199094 CGAACCATCAC
1 CGAACCATCAC
34199105 CGA
1 CGA
34199108 GTCATCAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.44, G:0.12, T:0.08
Consensus pattern (11 bp):
CGAACCATCAC
Found at i:34200232 original size:50 final size:51
Alignment explanation
Indices: 34200097--34200240 Score: 182
Period size: 51 Copynumber: 2.8 Consensus size: 51
34200087 AAGGTGGAAG
*
34200097 CAGTGGTAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAAATATATAT
1 CAGTGGCAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAAATATATAT
* * * * ** *
34200148 CAGTGGCAGTATATCTGCATACCAGTGGTCGCTTGTCCACAATGTGT-TAT
1 CAGTGGCAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAAATATATAT
* * *
34200198 CAGTGGCAGTTTATCTACAAATTAGCGGTGGCTTGTCCACAAA
1 CAGTGGCAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAA
34200241 TGGTTTTCGG
Statistics
Matches: 77, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 38 0.49
51 39 0.51
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (51 bp):
CAGTGGCAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAAATATATAT
Found at i:34201489 original size:25 final size:25
Alignment explanation
Indices: 34201451--34201499 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
34201441 AATTGTGTTT
* *
34201451 ATATGTTTTTAATTGAAATATATAG
1 ATATGTTATGAATTGAAATATATAG
**
34201476 ATATGTTATGAATTGTTATATATA
1 ATATGTTATGAATTGAAATATATA
34201500 ATTACTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (25 bp):
ATATGTTATGAATTGAAATATATAG
Found at i:34201733 original size:25 final size:25
Alignment explanation
Indices: 34201705--34201785 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
34201695 GTTCCAACCC
34201705 ATAGCTCGTGTGAGCATACCAATTT
1 ATAGCTCGTGTGAGCATACCAATTT
* *
34201730 ATAGCTCGTGAGAGCATA-CAGATCT
1 ATAGCTCGTGTGAGCATACCA-ATTT
* * * *
34201755 ACAGCTCGAGTGAGCATACCGATTC
1 ATAGCTCGTGTGAGCATACCAATTT
34201780 ATAGCT
1 ATAGCT
34201786 TGTATTAGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
24 2 0.04
25 42 0.93
26 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (25 bp):
ATAGCTCGTGTGAGCATACCAATTT
Found at i:34203586 original size:28 final size:29
Alignment explanation
Indices: 34203529--34203586 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
34203519 TTTAAATAAA
* *
34203529 TATGGACTTTTATTTATGATTTAGATTTT
1 TATGGACTTTTATTGATGATTTAGACTTT
*
34203558 TATGGAC-TTTATTGCT-ATTTGAGACTTT
1 TATGGACTTTTATTGATGATTT-AGACTTT
34203586 T
1 T
34203587 TTATGTCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 4 0.16
28 14 0.56
29 7 0.28
ACGTcount: A:0.22, C:0.07, G:0.16, T:0.55
Consensus pattern (29 bp):
TATGGACTTTTATTGATGATTTAGACTTT
Found at i:34204772 original size:116 final size:116
Alignment explanation
Indices: 34204649--34204877 Score: 327
Period size: 116 Copynumber: 2.0 Consensus size: 116
34204639 TTCATACAAA
* * * *
34204649 ATATTAAT-TGTATATATTTTACCAAATTTATTAATATAAATAGTTTTATTAATTAATTTCAGTT
1 ATATTAATAT-TATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTC
* *
34204713 AAAATATAAAAGA-TATGGAAATTAATATTCGTTTGGAAAGAATATAATTAAG
65 AAAATATAAAAGACT-TAGAAATTAATATTCGTTTGGAAAAAATATAATTAAG
* * **
34204765 ATATTAATATTATATATTTTATCAAATTTATTAATATGAACAATTATATTAATTAATTTTGGTCA
1 ATATTAATATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCA
*
34204830 AAATATAAAAGACTTAGAAATTAATATTCTTTTGGAAAAAATATAATT
66 AAATATAAAAGACTTAGAAATTAATATTCGTTTGGAAAAAATATAATT
34204878 CCTTTTTCAA
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
116 98 0.98
117 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (116 bp):
ATATTAATATTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCA
AAATATAAAAGACTTAGAAATTAATATTCGTTTGGAAAAAATATAATTAAG
Found at i:34204821 original size:138 final size:136
Alignment explanation
Indices: 34204480--34204768 Score: 377
Period size: 136 Copynumber: 2.1 Consensus size: 136
34204470 GAAAACATAG
* * * * *
34204480 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAAGATATGAATTTGATTCATACAAAATATTAATTGTATACATATT--CAAATTAATT
** * *
34204545 AATATATAA-ACATTTA-T-ATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
64 AATATA-AATAGTTTTATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCGT
34204607 TTGGAAAGA
128 TTGGAAAGA
* * * *
34204616 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAAGATATGAATTTGATTCATACAAAATATTAATTGTATACATATT--CAAATTAATT
* *
34204681 AATATAAATAGTTTTATTAATTAATTTCAGTTAAAATATAAAAGATATGGAAATTAATATTCGTT
64 AATATAAATAGTTTTATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCGTT
34204746 TGGAAAGA
129 TGGAAAGA
34204754 ATATAATTAAGATAT
1 ATATAATTAAGATAT
34204769 TAATATTATA
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
135 2 0.01
136 75 0.53
137 1 0.01
138 64 0.45
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (136 bp):
ATATAATTAAGATATGAATTTGATTCATACAAAATATTAATTGTATACATATTCAAATTAATTAA
TATAAATAGTTTTATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCGTTTG
GAAAGA
Found at i:34204980 original size:75 final size:75
Alignment explanation
Indices: 34204853--34204999 Score: 186
Period size: 75 Copynumber: 2.0 Consensus size: 75
34204843 TTAGAAATTA
* * ** ** * *
34204853 ATATTCTTTTGGAAAAAATATAATTCCTTTTTCAAACTTTTGATTTGTCTTCTCTATTAATAAGA
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
34204918 GAATAATTCT
66 GAATAATTCT
* ** *
34204928 ATATTCTTTTAGAAAGAATATAAATAATTTTTTTAACTTTCCATTTGACTTCTATATTAATAAGG
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
34204993 GAATAAT
66 GAATAAT
34205000 CTTTTAGAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
75 60 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTAGAAAAAATATAAATAATTTTTCAAACTTTCCATTTGACTTCTATATTAATAAGA
GAATAATTCT
Found at i:34205403 original size:18 final size:17
Alignment explanation
Indices: 34205380--34205417 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
34205370 TTAAGATTTC
34205380 TATAATAATA-AAATATAA
1 TATAATAA-AGAAATA-AA
34205398 TATAATAAAGAAATAAA
1 TATAATAAAGAAATAAA
34205415 TAT
1 TAT
34205418 CAAGAGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TATAATAAAGAAATAAA
Found at i:34212132 original size:21 final size:18
Alignment explanation
Indices: 34212106--34212149 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
34212096 TTGAAATATA
34212106 TAATTATCTTTACAATAAAAT
1 TAATTAT-TTTA-AAT-AAAT
*
34212127 TAATTATTTTAGATAAAT
1 TAATTATTTTAAATAAAT
34212145 TAATT
1 TAATT
34212150 TTAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 2 0.09
20 4 0.18
21 7 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (18 bp):
TAATTATTTTAAATAAAT
Found at i:34213506 original size:16 final size:16
Alignment explanation
Indices: 34213487--34213517 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
34213477 ATTTTAGGGT
34213487 TGTGAAATTGAGACTG
1 TGTGAAATTGAGACTG
34213503 TGTGAAATTGAGACT
1 TGTGAAATTGAGACT
34213518 CTGTAAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (16 bp):
TGTGAAATTGAGACTG
Found at i:34219782 original size:42 final size:42
Alignment explanation
Indices: 34219734--34219813 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
34219724 AATATATTTA
34219734 TTTTTTATTTTTAAAATATTTTTAAAATACTTGTTTTAAATT
1 TTTTTTATTTTTAAAATATTTTTAAAATACTTGTTTTAAATT
* *
34219776 TTTTTTATTTTTAAAATATTTTTAAAATCCTTTTTTTA
1 TTTTTTATTTTTAAAATATTTTTAAAATACTTGTTTTA
34219814 TTTTTTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (42 bp):
TTTTTTATTTTTAAAATATTTTTAAAATACTTGTTTTAAATT
Found at i:34219785 original size:31 final size:30
Alignment explanation
Indices: 34219750--34219830 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 30
34219740 ATTTTTAAAA
*
34219750 TATTTTTAAAATACTTGTTTTAAAT-TTTTTT
1 TATTTTTAAAATA-TT-TTTAAAATCTTTTTT
34219781 TATTTTTAAAATATTTTTAAAATCCTTTTTT
1 TATTTTTAAAATATTTTTAAAAT-CTTTTTT
*
34219812 TATTTTTTAAAATTTTTTT
1 TA-TTTTTAAAATATTTTT
34219831 TGGTGTTTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 7 0.16
30 2 0.04
31 21 0.47
32 15 0.33
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (30 bp):
TATTTTTAAAATATTTTTAAAATCTTTTTT
Found at i:34219810 original size:12 final size:11
Alignment explanation
Indices: 34219739--34219803 Score: 66
Period size: 11 Copynumber: 6.1 Consensus size: 11
34219729 ATTTATTTTT
34219739 TATTTTTAAAA
1 TATTTTTAAAA
34219750 TATTTTTAAAA
1 TATTTTTAAAA
*
34219761 TACTTGTTTTAAA
1 TA-TT-TTTAAAA
*
34219774 T-TTTTT---T
1 TATTTTTAAAA
34219781 TATTTTTAAAA
1 TATTTTTAAAA
34219792 TATTTTTAAAA
1 TATTTTTAAAA
34219803 T
1 T
34219804 CCTTTTTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
7 1 0.02
8 5 0.11
10 3 0.07
11 27 0.60
12 2 0.04
13 7 0.16
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:34219829 original size:42 final size:42
Alignment explanation
Indices: 34219733--34219828 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
34219723 AAATATATTT
34219733 ATTTTTT--ATTTTTAAAATATTTTTAAAATACTTGTTTTAA
1 ATTTTTTAAATTTTTAAAATATTTTTAAAATACTTGTTTTAA
** * *
34219773 ATTTTTTTTATTTTTAAAATATTTTTAAAATCCTT-TTTT-T
1 ATTTTTTAAATTTTTAAAATATTTTTAAAATACTTGTTTTAA
34219813 ATTTTTTAAAATTTTT
1 ATTTTTT-AAATTTTT
34219829 TTTGGTGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 14 0.29
41 10 0.20
42 25 0.51
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (42 bp):
ATTTTTTAAATTTTTAAAATATTTTTAAAATACTTGTTTTAA
Found at i:34220580 original size:11 final size:11
Alignment explanation
Indices: 34220544--34220605 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
34220534 ACCACCACTT
*
34220544 CACCACCATAG
1 CACCACCCTAG
* *
34220555 CACCACTAC-AC
1 CACCAC-CCTAG
34220566 CACCACCCTAG
1 CACCACCCTAG
* *
34220577 CACCACCGTAT
1 CACCACCCTAG
*
34220588 CACCACCCTTG
1 CACCACCCTAG
34220599 CACCACC
1 CACCACC
34220606 TTAAAAAAAG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
10 1 0.03
11 38 0.97
ACGTcount: A:0.29, C:0.53, G:0.06, T:0.11
Consensus pattern (11 bp):
CACCACCCTAG
Found at i:34220591 original size:22 final size:22
Alignment explanation
Indices: 34220533--34220605 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
34220523 TTTCCTTGAT
* *
34220533 CACCACCACTTCACCACCATAG
1 CACCACCACATCACCACCCTAG
* *
34220555 CACCACTACACCACCACCCTAG
1 CACCACCACATCACCACCCTAG
** *
34220577 CACCACCGTATCACCACCCTTG
1 CACCACCACATCACCACCCTAG
34220599 CACCACC
1 CACCACC
34220606 TTAAAAAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.29, C:0.53, G:0.05, T:0.12
Consensus pattern (22 bp):
CACCACCACATCACCACCCTAG
Found at i:34223212 original size:25 final size:24
Alignment explanation
Indices: 34223184--34223231 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
34223174 ATCCGGGCAA
34223184 TATAAC-GAGAAGCTCACAAAGAGCC
1 TATAACAG-GAAGCTC-CAAAGAGCC
*
34223209 TATAACAGGTAGCTCCAAAGAGC
1 TATAACAGGAAGCTCCAAAGAGC
34223232 AATTAACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (24 bp):
TATAACAGGAAGCTCCAAAGAGCC
Found at i:34223366 original size:26 final size:26
Alignment explanation
Indices: 34223183--34223372 Score: 87
Period size: 24 Copynumber: 7.7 Consensus size: 26
34223173 TATCCGGGCA
* *
34223183 ATATAACGAGAAGCTCACAAAGAGCC
1 ATATAACGGGAAGCTCACGAAGAGCC
* * * *
34223209 -TATAACAGGTAGCTC-CAAAGAGCA
1 ATATAACGGGAAGCTCACGAAGAGCC
* * *
34223233 AT-TAACGGGTAGCTC-TGAAGAGCA
1 ATATAACGGGAAGCTCACGAAGAGCC
* * *
34223257 AT-TAACGGGAAG--CACTGGATAGCA
1 ATATAACGGGAAGCTCAC-GAAGAGCC
* * * *
34223281 ATATAACGAGAAGTTCAAGCA-AG-C
1 ATATAACGGGAAGCTCACGAAGAGCC
* * *
34223305 A-CTAACAGGAAGCTCACAAAGAGCC
1 ATATAACGGGAAGCTCACGAAGAGCC
* *
34223330 -TTTAATTGGGAAGCTCACGAAGAGCC
1 ATATAA-CGGGAAGCTCACGAAGAGCC
*
34223356 ATATAACGGGACGCTCA
1 ATATAACGGGAAGCTCA
34223373 TAAGAGCTGT
Statistics
Matches: 124, Mismatches: 29, Indels: 22
0.71 0.17 0.13
Matches are distributed among these distances:
22 1 0.01
23 12 0.10
24 49 0.40
25 28 0.23
26 28 0.23
27 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (26 bp):
ATATAACGGGAAGCTCACGAAGAGCC
Found at i:34230707 original size:25 final size:24
Alignment explanation
Indices: 34230679--34230726 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
34230669 ATCCGGGCAA
34230679 TATAACGAGAAGCTCACAAAGAGCC
1 TATAACGAGAAGCTC-CAAAGAGCC
* *
34230704 TATAACGGGTAGCTCCAAAGAGC
1 TATAACGAGAAGCTCCAAAGAGC
34230727 AATTAACGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.15
Consensus pattern (24 bp):
TATAACGAGAAGCTCCAAAGAGCC
Found at i:34230733 original size:24 final size:25
Alignment explanation
Indices: 34230675--34230753 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 25
34230665 GCTTATCCGG
* *
34230675 GCAATATAACGAGAAGCTCACAAAGA
1 GCAATATAACGGGTAGCTC-CAAAGA
*
34230701 GC-CTATAACGGGTAGCTCCAAAGA
1 GCAATATAACGGGTAGCTCCAAAGA
*
34230725 GCAAT-TAACGGGTAGCTCCGAAGA
1 GCAATATAACGGGTAGCTCCAAAGA
34230749 GCAAT
1 GCAAT
34230754 TAATGAGAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 31 0.66
25 14 0.30
26 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (25 bp):
GCAATATAACGGGTAGCTCCAAAGA
Found at i:34230867 original size:26 final size:26
Alignment explanation
Indices: 34230806--34230861 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
34230796 GAGCACTAAC
*
34230806 GGGAAGCTCACAAAGAGCCTTTAATT
1 GGGAAGCTCACAAAGAGCCTATAATT
*
34230832 GGGAAGCTCACGAAGAGCCATATAA-T
1 GGGAAGCTCACAAAGAGCC-TATAATT
34230858 GGGA
1 GGGA
34230862 CACTCATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCTATAATT
Found at i:34236253 original size:19 final size:19
Alignment explanation
Indices: 34236222--34236258 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
34236212 TAAGTGCACT
34236222 TTAATTATTTTTT-AAAAA
1 TTAATTATTTTTTGAAAAA
34236240 TTAATTATTTTTTTGAAAA
1 TTAATTA-TTTTTTGAAAA
34236259 GAATTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TTAATTATTTTTTGAAAAA
Found at i:34236421 original size:12 final size:12
Alignment explanation
Indices: 34236406--34236431 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34236396 CACATTTGAA
34236406 AAATTCCTTTAG
1 AAATTCCTTTAG
34236418 AAATTCCTTTAG
1 AAATTCCTTTAG
34236430 AA
1 AA
34236432 TAACATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (12 bp):
AAATTCCTTTAG
Found at i:34239890 original size:27 final size:27
Alignment explanation
Indices: 34239842--34239893 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
34239832 ATACCCTCGA
* *
34239842 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATAACCATAATGCCCCTGT
* *
34239869 AGGGTAAAATAACTATATTGCCCCT
1 AGGGTAAAATAACCATAATGCCCCT
34239894 CGGGGTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AGGGTAAAATAACCATAATGCCCCTGT
Found at i:34240019 original size:24 final size:24
Alignment explanation
Indices: 34239899--34240020 Score: 127
Period size: 24 Copynumber: 5.1 Consensus size: 24
34239889 CCCCTCGGGG
* * *
34239899 TTAAACGATTGATTTGCCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * * * **
34239923 GTAATTAAATGATTTGTCTAAGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
34239947 GTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
34239971 TGAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* *
34239995 TTAAATGACTGATTTTTTTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
34240019 TT
1 TT
34240021 GTATCACTTA
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 80 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.45
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:34240186 original size:26 final size:26
Alignment explanation
Indices: 34240148--34240201 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
34240138 TTCGCCACAT
* *
34240148 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
34240174 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
34240200 AT
1 AT
34240202 GCTATTAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:34240259 original size:32 final size:32
Alignment explanation
Indices: 34240216--34240390 Score: 203
Period size: 32 Copynumber: 5.5 Consensus size: 32
34240206 TTAATGGCTT
* *
34240216 TGTGCAGATCATATTACCATTACTGATGGTTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* * * *
34240248 TGTACCAATCATATTACCATTACTGATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
*
34240280 TGTGCCGATCATATTACTACTACTGATGGCTT-
1 TGTGCCGATCATATTACTATTACTGATGG-TTG
* *
34240312 TGTGCCGATCATACTACTATTACT-ATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* *
34240343 TGTGCCGATCATATTACTACTACTGAAGGGTT-
1 TGTGCCGATCATATTACTATTACTG-ATGGTTG
*
34240375 TGTGCCAATCATATTA
1 TGTGCCGATCATATTA
34240391 TTGTACTTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.01
31 26 0.21
32 90 0.74
33 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTGCCGATCATATTACTATTACTGATGGTTG
Found at i:34240290 original size:64 final size:62
Alignment explanation
Indices: 34240209--34240390 Score: 247
Period size: 64 Copynumber: 2.9 Consensus size: 62
34240199 GATGCTATTA
* * * * *
34240209 ATGGCTTTGTGCAGATCATATTACCATTACTGATGGTTGTGTACCAATCATATTACCATTACT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTT-TGTGCCAATCATATTACCATTACT
* * *
34240272 GATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTACT
1 -ATGGCTGTGTGCCGATCATATTACTACTACTGATGG-TTTGTGCCAATCATATTACCATTACT
*
34240336 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA
1 ATGGCTGTGTGCCGATCATATTACTACTACTG-ATGGTTTGTGCCAATCATATTA
34240391 TTGTACTTAT
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
63 48 0.46
64 55 0.52
65 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (62 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTTTGTGCCAATCATATTACCATTACT
Found at i:34240402 original size:63 final size:63
Alignment explanation
Indices: 34240209--34240404 Score: 227
Period size: 63 Copynumber: 3.1 Consensus size: 63
34240199 GATGCTATTA
* * * * * * * *
34240209 ATGGCTTTGTGCAGATCATATTACCATTACTG-ATGGTTGTGTACCAATCATATTACCATTACTG
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTT-TGTGCCAATCATATTA-CTTTACTT
* * * *
34240273 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTAC-T
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACT-TTACTT
34240336 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA-TTGTACTT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTT-TACTT
34240399 ATGGCT
1 ATGGCT
34240405 TGTAGCAATT
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
61 1 0.01
62 4 0.04
63 59 0.53
64 45 0.40
65 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (63 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTTTACTT
Found at i:34250456 original size:54 final size:55
Alignment explanation
Indices: 34250379--34250525 Score: 210
Period size: 54 Copynumber: 2.7 Consensus size: 55
34250369 CCACATGGCA
*
34250379 TCATAGT-CCAAACTAGGTCTTACACTATGTGGTCTTCTT-TTCCCCATATGATG
1 TCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCTTATTCCCCATATGATG
*
34250432 TCATAGTCCCAAACTAGGTCTTACACTATATGGTATT-TTATTCCCCATATGATG
1 TCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCTTATTCCCCATATGATG
* * * * *
34250486 CCATAATCCCAGACTAGATCTTACACTATATAGTCTTCTT
1 TCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCTT
34250526 GACATGACCA
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
53 9 0.11
54 72 0.87
55 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (55 bp):
TCATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCTTATTCCCCATATGATG
Found at i:34253565 original size:43 final size:42
Alignment explanation
Indices: 34253474--34253617 Score: 182
Period size: 43 Copynumber: 3.4 Consensus size: 42
34253464 TAGGGTTACC
* *
34253474 GAGATTACGTGTAAGACCATATCTGG-GATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATGTCTGGACAT-TGGCATCGATAT
*
34253516 GAGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATAT
1 GAGATTACGTGTAAGACCATGTCT-GGACATTGGCATCGATAT
* * * *
34253559 GTGATTTCGTGTAAGACCATGGCTGGGCTATTGGCATCGATAT
1 GAGATTACGTGTAAGACCATGTCTGGAC-ATTGGCATCGATAT
*
34253602 GAGATTACATGTAAGA
1 GAGATTACGTGTAAGA
34253618 TCATATTTGG
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
42 25 0.28
43 63 0.70
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATGTCTGGACATTGGCATCGATAT
Found at i:34260946 original size:17 final size:17
Alignment explanation
Indices: 34260916--34260948 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
34260906 TGGGTCCTAA
34260916 AAATGCTTCATCTCCTC
1 AAATGCTTCATCTCCTC
34260933 AAAT-CTTCAGTCTCCT
1 AAATGCTTCA-TCTCCT
34260949 ATGTGGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATGCTTCATCTCCTC
Found at i:34261251 original size:17 final size:18
Alignment explanation
Indices: 34261231--34261265 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
34261221 TCTAAAAGTG
34261231 CTTTTGGAGCCA-AAGCA
1 CTTTTGGAGCCATAAGCA
*
34261248 CTTTTGGCGCCATAAGCA
1 CTTTTGGAGCCATAAGCA
34261266 ATAAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (18 bp):
CTTTTGGAGCCATAAGCA
Found at i:34263564 original size:161 final size:162
Alignment explanation
Indices: 34263293--34263618 Score: 609
Period size: 161 Copynumber: 2.0 Consensus size: 162
34263283 TTGATGATTC
34263293 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
34263358 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
34263423 CTGCAGTTTGAGG-ATCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
*
34263454 ACCTGGTGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
* *
34263519 CTACAAAGGTGGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTGCTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
*
34263584 CTGCAGTTTGAGGTTTCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
34263616 ACC
1 ACC
34263619 ACCAATATCA
Statistics
Matches: 160, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
161 140 0.88
162 20 0.12
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (162 bp):
ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
Found at i:34269277 original size:35 final size:35
Alignment explanation
Indices: 34269190--34269285 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 35
34269180 ATGAATATTT
* **
34269190 TGATTATGATTCACATGTTAAGCATGCTATTGTTC
1 TGATTATGATTCACATGTTAAGCATGCCATAATTC
** *
34269225 TGCCTATGACTT-GCATGTTAAGCATGCCATAATTC
1 TGATTATGA-TTCACATGTTAAGCATGCCATAATTC
* *
34269260 TGATTTTGATTCACATGTTAAACATG
1 TGATTATGATTCACATGTTAAGCATG
34269286 TCACTGTGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
34 2 0.04
35 44 0.92
36 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (35 bp):
TGATTATGATTCACATGTTAAGCATGCCATAATTC
Found at i:34272261 original size:10 final size:10
Alignment explanation
Indices: 34272248--34272281 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
34272238 GGTTTGTTAT
34272248 TTTTGTAGGA
1 TTTTGTAGGA
34272258 TTTTGTAGGA
1 TTTTGTAGGA
34272268 TTTTGTAGGA
1 TTTTGTAGGA
34272278 TTTT
1 TTTT
34272282 AAGTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (10 bp):
TTTTGTAGGA
Found at i:34272291 original size:20 final size:21
Alignment explanation
Indices: 34272245--34272292 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
34272235 TATGGTTTGT
*
34272245 TATTTTTGTAGGATTTTGTAG
1 TATTTTTGTAGGATTTTGAAG
*
34272266 GA-TTTTGTAGGATTTT-AAG
1 TATTTTTGTAGGATTTTGAAG
34272285 TATTTTTG
1 TATTTTTG
34272293 ATAATGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 19 0.83
21 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (21 bp):
TATTTTTGTAGGATTTTGAAG
Found at i:34274342 original size:32 final size:32
Alignment explanation
Indices: 34274306--34274371 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
34274296 ATTCTAAAAG
34274306 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
34274338 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
34274370 GT
1 GT
34274372 ATATGACACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (32 bp):
GTTGTCCTACTAGGACTTAATAACATTAGCTA
Found at i:34277228 original size:29 final size:29
Alignment explanation
Indices: 34277176--34277235 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
34277166 TGTAGCCCAG
* *
34277176 CCGTGTATGTCACATGGATGTGTGACAGC
1 CCGTGTATGTCACACGGATATGTGACAGC
* * *
34277205 CCGTGTGTGTCACACGGCTATGTGATAGC
1 CCGTGTATGTCACACGGATATGTGACAGC
34277234 CC
1 CC
34277236 ATGTCCCAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (29 bp):
CCGTGTATGTCACACGGATATGTGACAGC
Found at i:34278678 original size:18 final size:19
Alignment explanation
Indices: 34278632--34278678 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
34278622 AAATAATTTC
34278632 ATTCAATT-AAGTACTTCA
1 ATTCAATTCAAGTACTTCA
*
34278650 ATT-AACCTCAAGTA-TTCA
1 ATTCAA-TTCAAGTACTTCA
34278668 ATTCAATTCAA
1 ATTCAATTCAA
34278679 TCTATAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.36
Consensus pattern (19 bp):
ATTCAATTCAAGTACTTCA
Found at i:34280799 original size:37 final size:37
Alignment explanation
Indices: 34280758--34280887 Score: 224
Period size: 37 Copynumber: 3.5 Consensus size: 37
34280748 GGCGGATGTA
34280758 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
* *
34280795 TAGCTCTTATGAGCATTTGGCGTGTTTACAGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
*
34280832 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
*
34280869 TAGCTCTTATGAGCGTTTG
1 TAGCTCTTATGAGCATTTG
34280888 GCATGTTCAG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 87 1.00
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (37 bp):
TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
Found at i:34280840 original size:74 final size:72
Alignment explanation
Indices: 34280758--34280902 Score: 245
Period size: 74 Copynumber: 2.0 Consensus size: 72
34280748 GGCGGATGTA
*
34280758 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGATTAGCTCTTATGAGCATTTGGCGTGTTTA
1 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGATTAGCTCTTATGAGCATTTGGCATG-TT-
34280823 CAGTTGGAT
64 CAGTTGGAT
* *
34280832 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGATTAGCTCTTATGAGCGTTTGGCATGTTCA
1 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGATTAGCTCTTATGAGCATTTGGCATGTTCA
34280897 GTTGGA
66 GTTGGA
34280903 CTATTTGTGT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
72 8 0.12
73 2 0.03
74 58 0.85
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.41
Consensus pattern (72 bp):
TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGATTAGCTCTTATGAGCATTTGGCATGTTCA
GTTGGAT
Found at i:34282583 original size:26 final size:26
Alignment explanation
Indices: 34282547--34282643 Score: 83
Period size: 26 Copynumber: 3.8 Consensus size: 26
34282537 CACAACCTAA
* *
34282547 TGAGCGTCCCGA-TATATGGCTCTTTG
1 TGAGCTTCCCGATTA-AAGGCTCTTTG
*
34282573 TGAGCTTCCCGATTAAAGTCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
** * **
34282599 TGAGCTTCTTGATTAATGGCTCTCCG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
*
34282625 -GAGCTTCCCG-TTAATGGCT
1 TGAGCTTCCCGATTAAAGGCT
34282644 ATCCGGAGCT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 9 0.15
25 8 0.14
26 40 0.68
27 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTTG
Found at i:34282641 original size:24 final size:24
Alignment explanation
Indices: 34282610--34282669 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
34282600 GAGCTTCTTG
*
34282610 ATTAATGGCTCTCCGGAGCTTCCC
1 ATTAATGGCTCTCCGGAGCTACCC
* *
34282634 GTTAATGGCTATCCGGAGCTACCC
1 ATTAATGGCTCTCCGGAGCTACCC
*
34282658 ATTATTGGCTCT
1 ATTAATGGCTCT
34282670 TATGAGCTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (24 bp):
ATTAATGGCTCTCCGGAGCTACCC
Found at i:34290343 original size:26 final size:26
Alignment explanation
Indices: 34290314--34290386 Score: 62
Period size: 26 Copynumber: 2.8 Consensus size: 26
34290304 CCCGATATAT
34290314 GGCTTTTCATGAGCTTTTCGATTAAA
1 GGCTTTTCATGAGCTTTTCGATTAAA
* * *
34290340 GGCTCTTT-GTGAGCTTCTT-AATTAAT
1 GGCT-TTTCATGAGCTT-TTCGATTAAA
* *
34290366 GGCTTTCCA-GAGCTTCTCGAT
1 GGCTTTTCATGAGCTTTTCGAT
34290387 ATGGCTCGCT
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
24 1 0.03
25 10 0.28
26 20 0.56
27 5 0.14
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (26 bp):
GGCTTTTCATGAGCTTTTCGATTAAA
Found at i:34293130 original size:36 final size:36
Alignment explanation
Indices: 34293080--34293216 Score: 193
Period size: 36 Copynumber: 3.8 Consensus size: 36
34293070 ATGATTATCG
*
34293080 ATATTCTGATTTGCATGTTAATCATGCCATATTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * *
34293116 ATGTTCTGATTTGCATGTTAAGCTTGCCATATTCTG
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
*
34293152 ATATTCTGATTTGCATGTTAAGCATGCCATTTTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * * *
34293188 ATATTTTGATTCGTATGTAAAGCATGCCA
1 ATATTCTGATTTGCATGTTAAGCATGCCA
34293217 CTGAAAATCT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (36 bp):
ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
Done.