Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 122 of 196
Found at i:36859138 original size:19 final size:18
Alignment explanation
Indices: 36859114--36859162 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
36859104 TTTTATTGTC
*
36859114 TTTAAATTATTGTTGAAAT
1 TTTAAATTATT-TTCAAAT
36859133 TTTAAATTGA-TTTCAAAT
1 TTTAAATT-ATTTTCAAAT
*
36859151 TTTAAAATATTT
1 TTTAAATTATTT
36859163 AAATTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 15 0.58
19 9 0.35
20 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTAAATTATTTTCAAAT
Found at i:36860294 original size:15 final size:15
Alignment explanation
Indices: 36860274--36860307 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36860264 AAAATAAAAG
36860274 AATTTATTATATTTA
1 AATTTATTATATTTA
* *
36860289 AATTTATTTTATTTG
1 AATTTATTATATTTA
36860304 AATT
1 AATT
36860308 AAAAAGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
AATTTATTATATTTA
Found at i:36861227 original size:20 final size:20
Alignment explanation
Indices: 36861190--36861228 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36861180 CTTCATTTCT
* *
36861190 ATGTTTGTACAAATATGAAA
1 ATGTTTATACAAACATGAAA
*
36861210 ATGTTTATACTAACATGAA
1 ATGTTTATACAAACATGAA
36861229 TTATGTATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGTTTATACAAACATGAAA
Found at i:36861758 original size:21 final size:22
Alignment explanation
Indices: 36861733--36861774 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36861723 TTAAAAAATT
36861733 GGAGAAGT-GAAGAAAATAGAG
1 GGAGAAGTGGAAGAAAATAGAG
*
36861754 GGAGAAGTGGAAGATAATAGA
1 GGAGAAGTGGAAGAAAATAGA
36861775 ATATAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.38, T:0.12
Consensus pattern (22 bp):
GGAGAAGTGGAAGAAAATAGAG
Found at i:36871556 original size:106 final size:106
Alignment explanation
Indices: 36871410--36871611 Score: 307
Period size: 106 Copynumber: 1.9 Consensus size: 106
36871400 TGGATTAAGA
* * * * *
36871410 TTTAAGAGGATATTTGGCTATTTGGTCAAACGAAATAATCGAAACCCAGCACATTAGGGCACGTT
1 TTTAAGAGGATATTTGGCTATTTAGTCAAACGAAAAAATCGAAACCCAACACATTAGGACACATT
*
36871475 TCCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTAAAAT
66 TCCTCGAATTCCCAAACGC-AAATATTGCCTTACTTTAAAAT
*
36871517 TTTAA-AGGATATTTGGCTATTTAGTCGAACGAAAAAATCGAAACCCAACACATTAGGACACATT
1 TTTAAGAGGATATTTGGCTATTTAGTCAAACGAAAAAATCGAAACCCAACACATTAGGACACATT
* *
36871581 TTCTCGAATTCCCAAATGCAAATATTGCCTT
66 TCCTCGAATTCCCAAACGCAAATATTGCCTT
36871612 TATTATTTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
105 12 0.14
106 69 0.80
107 5 0.06
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (106 bp):
TTTAAGAGGATATTTGGCTATTTAGTCAAACGAAAAAATCGAAACCCAACACATTAGGACACATT
TCCTCGAATTCCCAAACGCAAATATTGCCTTACTTTAAAAT
Found at i:36872500 original size:27 final size:27
Alignment explanation
Indices: 36872470--36872535 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 27
36872460 TTTTAAAGCA
36872470 TAAAAGTATATATAAAATAAAAT-ATTT
1 TAAAAGTATATATAAAATAAAATCA-TT
36872497 TAAAAATGTAT-TATAAAATAAAATCATT
1 T-AAAA-GTATATATAAAATAAAATCATT
36872525 TAAAA-TATATA
1 TAAAAGTATATA
36872536 GACAATATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
25 3 0.09
26 2 0.06
27 5 0.14
28 20 0.57
29 5 0.14
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (27 bp):
TAAAAGTATATATAAAATAAAATCATT
Found at i:36872502 original size:28 final size:28
Alignment explanation
Indices: 36872471--36872529 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
36872461 TTTAAAGCAT
36872471 AAAA-GTATATATAAAATAAAAT-ATTTTA
1 AAAATGTAT-TATAAAATAAAATCA-TTTA
36872499 AAAATGTATTATAAAATAAAATCATTTA
1 AAAATGTATTATAAAATAAAATCATTTA
36872527 AAA
1 AAA
36872530 TATATAGACA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (28 bp):
AAAATGTATTATAAAATAAAATCATTTA
Found at i:36872709 original size:3 final size:3
Alignment explanation
Indices: 36872701--36872766 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
36872691 TAAAATGACG
36872701 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
36872749 ACA ACA ACA A-A ACA ACA A
1 ACA ACA ACA ACA ACA ACA A
36872767 TAGAAAAGGA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:36875920 original size:116 final size:117
Alignment explanation
Indices: 36875706--36875938 Score: 310
Period size: 116 Copynumber: 2.0 Consensus size: 117
36875696 CCGAAATGTG
*
36875706 ACTCACCATTTGAAAACAAGATAAAATGTTACAGACATTGTTCAAATAAAAACTATAGCTTTCTT
1 ACTCACCATTTGAAAACAAGATAAAATGTT--A-ACATTGTTCAAATAAAAACTATAGCTTTCCT
* * *
36875771 TAGCAATTAAAATTTGAGACCTAAATTCAAGTTTTATTATACATAATTATCATAT
63 CAACAATTAAAATTTGAGACCTAAATTCAAGTTTTATTATACACAATTATCATAT
*
36875826 ACTCATCC-TTTGAAAACAAGATAAAATGTT-ACATTGTTCAAATCAAAACTATAGCTTTCCTCA
1 ACTCA-CCATTTGAAAACAAGATAAAATGTTAACATTGTTCAAATAAAAACTATAGCTTTCCTCA
** * * *
36875889 ACAATTAAAATTTG-GGGCTCATATTCGAGTTTTATTATGCACAATTATCA
65 ACAATTAAAATTTGAGACCT-AAATTCAAGTTTTATTATACACAATTATCA
36875939 ATTCTATCTA
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
115 3 0.03
116 69 0.68
120 27 0.27
121 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (117 bp):
ACTCACCATTTGAAAACAAGATAAAATGTTAACATTGTTCAAATAAAAACTATAGCTTTCCTCAA
CAATTAAAATTTGAGACCTAAATTCAAGTTTTATTATACACAATTATCATAT
Found at i:36876075 original size:15 final size:14
Alignment explanation
Indices: 36876045--36876072 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36876035 TACATTCTCC
36876045 TTCAAAAATATCAA
1 TTCAAAAATATCAA
36876059 TTCAAAAATATCAA
1 TTCAAAAATATCAA
36876073 ATTTATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (14 bp):
TTCAAAAATATCAA
Found at i:36878937 original size:14 final size:14
Alignment explanation
Indices: 36878918--36878949 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36878908 CCAAAGTAAA
36878918 AAAATTTAAAAAGG
1 AAAATTTAAAAAGG
36878932 AAAATTTAAAAAGG
1 AAAATTTAAAAAGG
36878946 AAAA
1 AAAA
36878950 AAAAACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (14 bp):
AAAATTTAAAAAGG
Found at i:36881081 original size:21 final size:21
Alignment explanation
Indices: 36881031--36881081 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
36881021 TAGTTGGGCC
36881031 CAAATAA-AAAAATAAACAAA
1 CAAATAATAAAAATAAACAAA
36881051 CAGAAT-ATAAAAATAAA-AAA
1 CA-AATAATAAAAATAAACAAA
36881071 TCAAATAATAA
1 -CAAATAATAA
36881082 GAGTCCAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.16
Consensus pattern (21 bp):
CAAATAATAAAAATAAACAAA
Found at i:36881468 original size:15 final size:16
Alignment explanation
Indices: 36881448--36881477 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36881438 TTTTCAAAAA
36881448 AGAG-AAATTGAATAC
1 AGAGAAAATTGAATAC
36881463 AGAGAAAATTGAATA
1 AGAGAAAATTGAATA
36881478 TATTCGAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (16 bp):
AGAGAAAATTGAATAC
Found at i:36887205 original size:19 final size:20
Alignment explanation
Indices: 36887166--36887205 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36887156 CAAGGTCGTA
*
36887166 TATGTAAAATGTATCCGTTT
1 TATGTAAAAAGTATCCGTTT
*
36887186 TATGTAAAAAG-ATTCGTTT
1 TATGTAAAAAGTATCCGTTT
36887205 T
1 T
36887206 CTAGTAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (20 bp):
TATGTAAAAAGTATCCGTTT
Found at i:36894535 original size:45 final size:45
Alignment explanation
Indices: 36894435--36894797 Score: 259
Period size: 44 Copynumber: 7.9 Consensus size: 45
36894425 CACCGTAGTG
* * ** * **
36894435 AATCTTATCCCCCTGAAGTTGCAGCAGAGTAGATTAAAGCCA-CA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
* * **
36894479 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
* *
36894524 AATCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGATAGAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
* * * *
36894569 AATCTTATCTCCCTAAAGTTGTAATGGAGCAGATTAAAGCTA-CG
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
* * *
36894613 AATCTTATTTCCCTGAAGTTGTAGTGGAACATATTAAAGCTACTAGTCAAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG--A-TAG-C--A
* * ** * * *
36894664 AATCTTATCTCCTTAAAGTTACA-TCAGAGCAAATTAAAGTTA-CA
1 AATCTTATCTCCCTGAAGTTGTAGT-GGAGCAGATTAAAGATAGCA
* ** * * *
36894708 AATCTTATTTCCCT-AGAGTTACATTGGAACAGATTAAAGCTACAAGTTGCA
1 AATCTTATCTCCCTGA-AGTTGTAGTGGAGCAGATTAAAG-----A-TAGCA
*
36894759 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG
36894798 CGAACTTTAT
Statistics
Matches: 253, Mismatches: 47, Indels: 31
0.76 0.14 0.09
Matches are distributed among these distances:
43 1 0.00
44 98 0.39
45 81 0.32
46 1 0.00
47 2 0.01
48 2 0.01
49 1 0.00
50 2 0.01
51 64 0.25
52 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
Found at i:36894558 original size:89 final size:89
Alignment explanation
Indices: 36894435--36894797 Score: 255
Period size: 95 Copynumber: 3.9 Consensus size: 89
36894425 CACCGTAGTG
* ** * * *
36894435 AATCTTATCCCCCTGAAGTTGCAGCAGAGTAGATTAAAGCCA-CAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAGAAAATCTTATCTCCCTAAAGTT
* *
36894499 GCAGTGAAGCAGATCGAAGATAGCA
66 GCAATGAAGCAGATCAAAGATA-CA
* **
36894524 AATCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGATAGAAAATCTTATCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAGAAAATCTTATCTCCCTAAAGTT
* * * * *
36894589 GTAATGGAGCAGATTAAAGCTACG
66 GCAATGAAGCAGATCAAAGATACA
* * * * *
36894613 AATCTTATTTCCCTGAAGTTGTAGTGGAACATATTAAAGCTACTAGTCAAAAATCTTATCTCCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC--C-AG---AAAATCTTATCTCCCT
* * * * *
36894678 AAAGTTAC-ATCAGAGCAAATTAAAGTTACA
60 AAAGTTGCAATGA-AGCAGATCAAAGATACA
* * * * *
36894708 AATCTTATTTCCCT-AGAGTTACATTGGAACAGATTAAAGCTACAAGTTGCAAATCTTATCTCCC
1 AATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGC--C-A---GAAAATCTTATCTCCC
* * * *
36894772 TGAAGTTGCAGTGGAGCAGATTAAAG
59 TAAAGTTGCAATGAAGCAGATCAAAG
36894798 CGAACTTTAT
Statistics
Matches: 218, Mismatches: 43, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
89 71 0.33
90 36 0.17
92 2 0.01
94 3 0.01
95 104 0.48
96 1 0.00
98 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAGAAAATCTTATCTCCCTAAAGTT
GCAATGAAGCAGATCAAAGATACA
Found at i:36894634 original size:44 final size:44
Alignment explanation
Indices: 36894435--36894864 Score: 258
Period size: 44 Copynumber: 9.5 Consensus size: 44
36894425 CACCGTAGTG
* * ** * *
36894435 AATCTTATCCCCCTGAAGTTGCAGCAGAGTAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACA
* * ** *
36894479 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTA-CA
* * *
36894524 AATCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGATAGAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTA-CA
* * *
36894569 AATCTTATCTCCCTAAAGTTGTAATGGAGCAGATTAAAGCTACG
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACA
* * *
36894613 AATCTTATTTCCCTGAAGTTGTAGTGGAACATATTAAAGCTACTAGTCAAA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG---CTA--C--A
* * ** * * *
36894664 AATCTTATCTCCTTAAAGTTACA-TCAGAGCAAATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGTAGT-GGAGCAGATTAAAGCTACA
* ** * *
36894708 AATCTTATTTCCCT-AGAGTTACATTGGAACAGATTAAAGCTACAAGTTGCA
1 AATCTTATCTCCCTGA-AGTTGTAGTGGAGCAGATTAAAGCT---A----CA
* *
36894759 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC--GA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACA
* * * * ** * * **
36894801 ACT-TTATCTCTCTAAAATCATAGTAGAGCAGATTGAAGCTATG
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACA
*
36894844 AATCTTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTG
36894865 CAATGGGTTA
Statistics
Matches: 302, Mismatches: 62, Indels: 44
0.74 0.15 0.11
Matches are distributed among these distances:
41 28 0.09
42 3 0.01
43 3 0.01
44 112 0.37
45 81 0.27
46 1 0.00
47 4 0.01
48 2 0.01
49 1 0.00
50 1 0.00
51 65 0.22
52 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACA
Found at i:36894702 original size:95 final size:93
Alignment explanation
Indices: 36894478--36894798 Score: 271
Period size: 95 Copynumber: 3.4 Consensus size: 93
36894468 TTAAAGCCAC
* * * * ** * *
36894478 AAATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATCGAAGATAGCAAATCTTATCTCCCTGAAG
1 AAATCTTATCTCCCTAAAGTTGTAATAG-AGCAAATTAAAGCTA-CAAATCTTATTTCCCTGAAG
* *
36894542 TTGGAGTGGAGCAGATTAAAG--A-TAG-A
64 TTGCAGTGGAACAGATTAAAGCTACTAGTA
* * *
36894568 AAATCTTATCTCCCTAAAGTTGTAATGGAGCAGATTAAAGCTACGAATCTTATTTCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGTAATAGAGCAAATTAAAGCTACAAATCTTATTTCCCTGAAGTT
* *
36894633 GTAGTGGAACATATTAAAGCTACTAGTCAA
66 GCAGTGGAACAGATTAAAGCTACTAGT--A
* *
36894663 AAATCTTATCTCCTTAAAG-T-TACATCAGAGCAAATTAAAGTTACAAATCTTATTTCCCT-AGA
1 AAATCTTATCTCCCTAAAGTTGTA-AT-AGAGCAAATTAAAGCTACAAATCTTATTTCCCTGA-A
* * * *
36894725 GTTACATTGGAACAGATTAAAGCTACAAGTTGC
63 GTTGCAGTGGAACAGATTAAAGCTACTAG-T-A
* * * * *
36894758 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
1 AAATCTTATCTCCCTAAAGTTGTAATAGAGCAAATTAAAGC
36894799 GAACTTTATC
Statistics
Matches: 188, Mismatches: 30, Indels: 21
0.79 0.13 0.09
Matches are distributed among these distances:
89 36 0.19
90 35 0.19
91 2 0.01
92 3 0.02
93 2 0.01
94 4 0.02
95 102 0.54
96 3 0.02
97 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (93 bp):
AAATCTTATCTCCCTAAAGTTGTAATAGAGCAAATTAAAGCTACAAATCTTATTTCCCTGAAGTT
GCAGTGGAACAGATTAAAGCTACTAGTA
Found at i:36894792 original size:51 final size:51
Alignment explanation
Indices: 36894613--36894798 Score: 138
Period size: 51 Copynumber: 3.8 Consensus size: 51
36894603 TAAAGCTACG
* ** * * * *
36894613 AATCTTATTTCCCT-GAAGTTGTAGTGGAACATATTAAAGCTACTAGTCAAA
1 AATCTTATCTCCCTAG-AGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* * ** *
36894664 AATCTTATCTCCTTAAAGTTACA-T----CAGAGCAAA-TTA-AAGTTACA
1 AATCTTATCTCCCTAGAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* * *
36894708 AATCTTATTTCCCTAGAGTTACATTGGAACAGATTAAAGCTACAAGTTGCA
1 AATCTTATCTCCCTAGAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
* *
36894759 AATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGC
1 AATCTTATCTCCCTAG-AGTTACAGTGGAACAGATTAAAGC
36894799 GAACTTTATC
Statistics
Matches: 103, Mismatches: 23, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
44 25 0.24
45 3 0.03
46 6 0.06
49 7 0.07
50 4 0.04
51 58 0.56
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (51 bp):
AATCTTATCTCCCTAGAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
Found at i:36896392 original size:4 final size:4
Alignment explanation
Indices: 36896383--36896481 Score: 80
Period size: 4 Copynumber: 24.8 Consensus size: 4
36896373 ATTGTTTCCT
* *
36896383 TTTA TTTA TTTA TTTA TTTA -TTA TTCCT- TTTA TTTTA TTCA TTTA CTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA -TTTA TTTA TTTA TTTA
* * * *
36896432 CTTA TTTA CTTA TTTA TTTA TATA -TTA TTCA TTTA TTTA CTTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA
36896479 TTT
1 TTT
36896482 TAATTCCTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
3 9 0.12
4 58 0.75
5 9 0.12
6 1 0.01
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:36901156 original size:9 final size:9
Alignment explanation
Indices: 36901150--36901174 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
36901140 TAAGATAATC
36901150 ATAATAACA
1 ATAATAACA
36901159 ATAATAACA
1 ATAATAACA
36901168 ATAATAA
1 ATAATAA
36901175 GGATAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:36902910 original size:44 final size:44
Alignment explanation
Indices: 36902825--36902984 Score: 128
Period size: 44 Copynumber: 3.6 Consensus size: 44
36902815 AGGTTAACCC
* * ** *
36902825 GCTCCACTACAACCTCAGGGAGATAGGATTAT-CGACTTCAGTCT
1 GCTCCACTTCAACCTCAGGGAGATAAGATT-TGCTTCCTCAGTCT
36902869 GCTCCACTTCAACCTCAGGGAGATAAGATTTGCTTCCTCAGTCT
1 GCTCCACTTCAACCTCAGGGAGATAAGATTTGCTTCCTCAGTCT
* * * * * *
36902913 GCCCCACTGT-GACTTCAGAGG-GATAAGACTTGTTTTCTCAGTCT
1 GCTCCACT-TCAACCTCAG-GGAGATAAGATTTGCTTCCTCAGTCT
* * ** *
36902957 GCTCCGCTGCAAATTTAGGGAGATAAGA
1 GCTCCACTTCAACCTCAGGGAGATAAGA
36902985 CCTGTTGCGA
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
43 3 0.03
44 88 0.94
45 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (44 bp):
GCTCCACTTCAACCTCAGGGAGATAAGATTTGCTTCCTCAGTCT
Found at i:36902985 original size:44 final size:44
Alignment explanation
Indices: 36902862--36902990 Score: 134
Period size: 44 Copynumber: 2.9 Consensus size: 44
36902852 ATTATCGACT
* * * *
36902862 TCAGTCTGCTCCACTTCAACCTCAGGGAGATAAGATTTGCTTCC
1 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTTCC
* ** *
36902906 TCAGTCTGCCCCACTGTGACTTCAGAGG-GATAAGACTTGTTTTC
1 TCAGTCTGCTCCACTGCAACTTCAG-GGAGATAAGACTTGTTTCC
* * * *
36902950 TCAGTCTGCTCCGCTGCAAATTTAGGGAGATAAGACCTGTT
1 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTT
36902991 GCGATCCACT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
43 2 0.03
44 64 0.94
45 2 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (44 bp):
TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTTCC
Found at i:36915503 original size:21 final size:20
Alignment explanation
Indices: 36915454--36915501 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
36915444 ACAACAGAAA
*
36915454 AGAACAAATAGCAGATTTTT
1 AGAAAAAATAGCAGATTTTT
36915474 AGAAAAAATAGCAGATTTTT
1 AGAAAAAATAGCAGATTTTT
36915494 AGAAAAAA
1 AGAAAAAA
36915502 ATCTTGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (20 bp):
AGAAAAAATAGCAGATTTTT
Found at i:36916320 original size:12 final size:12
Alignment explanation
Indices: 36916303--36916365 Score: 58
Period size: 12 Copynumber: 5.4 Consensus size: 12
36916293 TAACCATTTA
36916303 ATTATTTTTATT
1 ATTATTTTTATT
**
36916315 ATTATTGCTATT
1 ATTATTTTTATT
*
36916327 ATTATTTTTATC
1 ATTATTTTTATT
*
36916339 ACTA--TTTATT
1 ATTATTTTTATT
* *
36916349 ATTGTTCTTATT
1 ATTATTTTTATT
36916361 ATTAT
1 ATTAT
36916366 ATTTGATTGT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
10 7 0.18
12 31 0.82
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.65
Consensus pattern (12 bp):
ATTATTTTTATT
Found at i:36920723 original size:34 final size:35
Alignment explanation
Indices: 36920681--36920764 Score: 143
Period size: 34 Copynumber: 2.4 Consensus size: 35
36920671 GATTTTCTTC
*
36920681 CAAATTATTATTCATTCATTCATAATCATATGGTA
1 CAAATTATTATTCATTCATTCATAATCATATGATA
36920716 C-AATTATTATTCATTCATTCATAATCATATGATA
1 CAAATTATTATTCATTCATTCATAATCATATGATA
*
36920750 CAAATAATTATTCAT
1 CAAATTATTATTCAT
36920765 AAATTTATAC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
34 33 0.72
35 13 0.28
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (35 bp):
CAAATTATTATTCATTCATTCATAATCATATGATA
Found at i:36922384 original size:7 final size:7
Alignment explanation
Indices: 36922372--36922405 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
36922362 CTCTAAGTCA
36922372 AAAAATG
1 AAAAATG
36922379 AAAAATG
1 AAAAATG
*
36922386 -AAAATA
1 AAAAATG
36922392 AAAAATG
1 AAAAATG
36922399 AAAAATG
1 AAAAATG
36922406 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:36922395 original size:13 final size:13
Alignment explanation
Indices: 36922373--36922402 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36922363 TCTAAGTCAA
*
36922373 AAAATGAAAAATG
1 AAAATAAAAAATG
36922386 AAAATAAAAAATG
1 AAAATAAAAAATG
36922399 AAAA
1 AAAA
36922403 ATGGAGAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:36923714 original size:87 final size:87
Alignment explanation
Indices: 36923563--36924045 Score: 637
Period size: 87 Copynumber: 5.5 Consensus size: 87
36923553 AGATCAGTGG
* * **
36923563 AGATGGCAGATCTTGCCTGCCTAAATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
36923628 CGGTTGCAGTGGAGCTGGTTAA
66 CGGTTGCAGTGGAGCTGGTTAA
* * * *
36923650 AGATAGCAGATCTTGCCTTCTTGTATTGATAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCAT
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
*
36923715 TGGTTGCAGTGGAGCTGGTTAA
66 CGGTTGCAGTGGAGCTGGTTAA
*
36923737 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCTAT
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
* *
36923802 CGGTTGCAATGGAGCGGGTTAA
66 CGGTTGCAGTGGAGCTGGTTAA
* * * * **
36923824 AAATAGCAGATCTTGCCTTCCTGCATAGACAGTGAAGCAGATCGAAGACCCCAGCCTTGCCTCCA
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-AACAAAGCCTTGCCTCCA
* * *
36923889 TCGGTTGTAGTGAAGCAGGTTAA
65 TCGGTTGCAGTGGAGCTGGTTAA
* * *
36923912 AGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGATAC-CAGTCTTGCCTCC
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCC
* *
36923976 CTCGGTTGCAGTGGAG-TAGGTTGA
64 ATCGGTTGCAGTGGAGCT-GGTTAA
* * * * *
36924000 AGATAGCAGATCTTGCATTCCGGCATCGATAGTGAAGCAGATCGAA
1 AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA
36924046 GATTACAAGT
Statistics
Matches: 349, Mismatches: 44, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
87 201 0.58
88 147 0.42
89 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (87 bp):
AGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
CGGTTGCAGTGGAGCTGGTTAA
Found at i:36923927 original size:44 final size:43
Alignment explanation
Indices: 36923617--36924015 Score: 154
Period size: 44 Copynumber: 9.1 Consensus size: 43
36923607 AAAACAAAGC
* * *
36923617 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCC-TCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
* * * * * * * *
36923661 CTTGCCTTCTTGTATTGATAGCGAAGCAGATCGAA-A-A-CAAAGT
1 CTTGCCTCCTCG-GTTG-CAGTGAAGCAGGTTGAAGATAGCAGA-T
* * * *
36923704 CTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCC-TCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
* * * * * *
36923748 CTTGCCTTCCT-GCATTGACAGCGAAGCAGATCGAA-A-A-CAAAGC
1 CTTGCC-TCCTCG-GTTG-CAGTGAAGCAGGTTGAAGATAGCAGA-T
* * * * * *
36923791 CTTGCCTCTATCGGTTGCAATGGAGCGGGTTAAAAATAGCAGAT
1 CTTGCCTC-CTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
* * * * *** *
36923835 CTTGCCTTCCT-GCATAGACAGTGAAGCAGATCGAAGACCCCAG-C
1 CTTGCC-TCCTCG-GTTG-CAGTGAAGCAGGTTGAAGATAGCAGAT
* *
36923879 CTTGCCTCCATCGGTTGTAGTGAAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCC-TCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
** * * * *
36923923 CTTGCCTTCCT-GCACTGACAGCGAAGCAGATCGAAGATACCAG-T
1 CTTGCC-TCCTCG-GTTG-CAGTGAAGCAGGTTGAAGATAGCAGAT
* *
36923967 CTTGCCTCCCTCGGTTGCAGTGGAGTAGGTTGAAGATAGCAGAT
1 CTTGCCT-CCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
36924011 CTTGC
1 CTTGC
36924016 ATTCCGGCAT
Statistics
Matches: 246, Mismatches: 81, Indels: 56
0.64 0.21 0.15
Matches are distributed among these distances:
42 28 0.11
43 72 0.29
44 75 0.30
45 71 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (43 bp):
CTTGCCTCCTCGGTTGCAGTGAAGCAGGTTGAAGATAGCAGAT
Found at i:36924048 original size:45 final size:44
Alignment explanation
Indices: 36923826--36924048 Score: 104
Period size: 45 Copynumber: 5.0 Consensus size: 44
36923816 CGGGTTAAAA
* *
36923826 ATAGCAGATCTTGCCTTCCTGCAT-AGACAGTGAAGCAGATCGAAG
1 ATAGCAGATCTTG-CTTCC-GCATCGGATAGTGAAGCAGATCGAAG
*** * * * * **
36923871 ACCCCAG-CCTTGCCT-C-CATCGGTTGTAGTGAAGCAGGTTAAAG
1 ATAGCAGATCTTGCTTCCGCATCGG--ATAGTGAAGCAGATCGAAG
* * *
36923914 ATAGCAGATCTTGCCTTCCTGCA-CTGACAGCGAAGCAGATCGAAG
1 ATAGCAGATCTTG-CTTCC-GCATCGGATAGTGAAGCAGATCGAAG
* * * * * * *
36923959 ATACCAG-TCTTGCCTCC-C-TCGGTTGCAGTGGAGTAGGTTGAAG
1 ATAGCAGATCTTGCTTCCGCATCGGAT--AGTGAAGCAGATCGAAG
36924002 ATAGCAGATCTTGCATTCCGGCATC-GATAGTGAAGCAGATCGAAG
1 ATAGCAGATCTTGC-TTCC-GCATCGGATAGTGAAGCAGATCGAAG
36924047 AT
1 AT
36924049 TACAAGTTCT
Statistics
Matches: 122, Mismatches: 40, Indels: 32
0.63 0.21 0.16
Matches are distributed among these distances:
40 3 0.02
41 4 0.03
42 1 0.01
43 42 0.34
44 19 0.16
45 43 0.35
46 1 0.01
47 5 0.04
48 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (44 bp):
ATAGCAGATCTTGCTTCCGCATCGGATAGTGAAGCAGATCGAAG
Found at i:36924525 original size:50 final size:50
Alignment explanation
Indices: 36924471--36924796 Score: 318
Period size: 50 Copynumber: 6.5 Consensus size: 50
36924461 GCAGTGGAAC
* * *
36924471 AGATTAAAGCCACATTGGTGAATCTTGCTTCTCCGACATTGCAGTTCAAA
1 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
* ** * * ** *
36924521 AGATTAAAGCTACAACAGCGAATCTT--ATCCTCCGGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAATGGCGAATCTTGCTTCC-CC-GAC-ATTGCAGTTCAAA
* *
36924571 AGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAA
1 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
* * * * * * * ** **
36924621 AGATTAAAGCTACAATAGCGAATCTTACCTCCCAGGCAATGCAGTGGAGC
1 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
* *
36924671 AGATTAAAGCCAC-ATCGGTGAATCATGCTTCCCCGACATTGCAGTTCAAA
1 AGATTAAAGCCACAAT-GGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
** * *
36924721 AGATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
36924771 AGATTAAAGCCACAATGGCGAATCTT
1 AGATTAAAGCCACAATGGCGAATCTT
36924797 ACTTTCCAAA
Statistics
Matches: 214, Mismatches: 54, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
48 2 0.01
49 5 0.02
50 200 0.93
51 4 0.02
52 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTCAAA
Found at i:36924614 original size:100 final size:100
Alignment explanation
Indices: 36924441--36924744 Score: 511
Period size: 100 Copynumber: 3.0 Consensus size: 100
36924431 CGAAGAAGCA
* *
36924441 AATCTTATCCCCCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCTCCG
1 AATCTTATCCTCCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCG
36924506 ACATTGCAGTTCAAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTCAAAAGATTAAAGCTACAACAGCG
* *
36924541 AATCTTATCCTCCGGGCGATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCG
1 AATCTTATCCTCCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCG
*
36924606 ACATTGCAGTTCAAAAGATTAAAGCTACAATAGCG
66 ACATTGCAGTTCAAAAGATTAAAGCTACAACAGCG
* * *
36924641 AATCTTA-CCTCCCAGGCAATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCATGCTTCCCC
1 AATCTTATCCT-CCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCC
*
36924705 GACATTGCAGTTCAAAAGATTAAAGCCACAACAGCG
65 GACATTGCAGTTCAAAAGATTAAAGCTACAACAGCG
36924741 AATC
1 AATC
36924745 ATGCTTCCCC
Statistics
Matches: 191, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
99 3 0.02
100 188 0.98
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (100 bp):
AATCTTATCCTCCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCG
ACATTGCAGTTCAAAAGATTAAAGCTACAACAGCG
Found at i:36924764 original size:100 final size:97
Alignment explanation
Indices: 36924450--36924796 Score: 453
Period size: 100 Copynumber: 3.5 Consensus size: 97
36924440 AAATCTTATC
*
36924450 CCCCAGGCAATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCTCCGACATTGCAG
1 CCCC-GGC-ATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAG
36924515 TTCAAAAGATTAAAGCTACAACAGCGAATCT-TAT
64 TTCAAAAGATTAAAGCTACAACAGCGAATCTCT-T
36924549 CCTCCGGGCGATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCA
1 CC-CC-GGC-ATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCA
* *
36924614 GTTCAAAAGATTAAAGCTACAATAGCGAATCTTACCT
63 GTTCAAAAGATTAAAGCTACAACAGCGAATC-T-CTT
* * * *
36924651 CCCAGGCAATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCATGCTTCCCCGACATTGCAGT
1 CCCCGGC-ATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGT
*
36924716 TCAAAAGATTAAAGCCACAACAGCGAATCATGCTT
65 TCAAAAGATTAAAGCTACAACAGCGAATC-T-CTT
* ** * * *
36924751 CCCCGACATTGCAGTTAAAAAGATTAAAGCCACAATGGCGAATCTT
1 CCCCGGCA-TGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTT
36924797 ACTTTCCAAA
Statistics
Matches: 218, Mismatches: 25, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
99 3 0.01
100 210 0.96
101 2 0.01
102 3 0.01
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (97 bp):
CCCCGGCATGCAGTGGAACAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGTT
CAAAAGATTAAAGCTACAACAGCGAATCTCTT
Found at i:36926237 original size:3 final size:3
Alignment explanation
Indices: 36926222--36926284 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
36926212 TAACCATTTA
* * * * *
36926222 ATT ATT TTT ATT ATT ATT ACT ATT ATT ATT TTT ATC ACT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* *
36926268 ATT GTT CTT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
36926285 ATTTGATTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
3 44 0.96
4 2 0.04
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36928496 original size:9 final size:9
Alignment explanation
Indices: 36928490--36928514 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
36928480 TAAGATAATC
36928490 ATAATAACA
1 ATAATAACA
36928499 ATAATAACA
1 ATAATAACA
36928508 ATAATAA
1 ATAATAA
36928515 GGATAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:36929974 original size:20 final size:20
Alignment explanation
Indices: 36929949--36929987 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36929939 TGATATGTAT
36929949 TTAAAT-ATAAAATAAATTAC
1 TTAAATAATAAAA-AAATTAC
36929969 TTAAATCAATAAAAAAATT
1 TTAAAT-AATAAAAAAATT
36929988 GAAAATTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAAATAATAAAAAAATTAC
Found at i:36933341 original size:9 final size:9
Alignment explanation
Indices: 36933317--36933361 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
36933307 ATTTTACAAT
*
36933317 TCGAATAGC
1 TCGAATAAC
*
36933326 TCAAATAAC
1 TCGAATAAC
*
36933335 TCGAATAAT
1 TCGAATAAC
36933344 TCGAATAAC
1 TCGAATAAC
*
36933353 TCAAATAAC
1 TCGAATAAC
36933362 AAATTTGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36935967 original size:10 final size:10
Alignment explanation
Indices: 36935952--36935993 Score: 75
Period size: 10 Copynumber: 4.2 Consensus size: 10
36935942 ACGTTTTTAA
36935952 TATATATATG
1 TATATATATG
36935962 TATATATATG
1 TATATATATG
36935972 TATATATATG
1 TATATATATG
*
36935982 TATGTATATG
1 TATATATATG
36935992 TA
1 TA
36935994 AAAAAACGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (10 bp):
TATATATATG
Found at i:36935970 original size:14 final size:14
Alignment explanation
Indices: 36935951--36935990 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
36935941 AACGTTTTTA
* *
36935951 ATATATATATGTAT
1 ATATATGTATATAT
36935965 ATATATGTATATAT
1 ATATATGTATATAT
*
36935979 ATGTATGTATAT
1 ATATATGTATAT
36935991 GTAAAAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
ATATATGTATATAT
Found at i:36940948 original size:25 final size:25
Alignment explanation
Indices: 36940914--36940965 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
36940904 ATGAATGTCA
*
36940914 TTAAAAAGGTCCACTAGAGAAAGGG
1 TTAAAAAGGTCAACTAGAGAAAGGG
36940939 TTAAAAAGGTCAACTAGAGAAAGGG
1 TTAAAAAGGTCAACTAGAGAAAGGG
36940964 TT
1 TT
36940966 TCTAATTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.44, C:0.10, G:0.27, T:0.19
Consensus pattern (25 bp):
TTAAAAAGGTCAACTAGAGAAAGGG
Found at i:36943674 original size:11 final size:11
Alignment explanation
Indices: 36943660--36943703 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
36943650 AAATAAATAT
36943660 TATTTTATTAA
1 TATTTTATTAA
*
36943671 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
36943684 TATTTTATTAT
1 TATTTTATTAA
36943695 TATTTTATT
1 TATTTTATT
36943704 TAGTATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:36945801 original size:33 final size:32
Alignment explanation
Indices: 36945750--36945910 Score: 124
Period size: 33 Copynumber: 4.8 Consensus size: 32
36945740 TAGTGTTTAT
36945750 ATGTAAGACCATAGTTGGGCTATGGCATTCTG
1 ATGTAAGACCATAGTTGGGCTATGGCATTCTG
* * * * *
36945782 ATGATAAGACAATAATTGGGTTATGGCACTATG
1 ATG-TAAGACCATAGTTGGGCTATGGCATTCTG
* * * * * *
36945815 AACGTAAGACCATGGTTGGACCATGGCAGTGTTTAT
1 -ATGTAAGACCATAGTTGGGCTATGGCA-T-TCT-G
*
36945851 ATGTAAGACCATAGCTGGGCTATGGCATTCTG
1 ATGTAAGACCATAGTTGGGCTATGGCATTCTG
* ** *
36945883 ATGATAAGATCATAACTGGGTTATGGCA
1 ATG-TAAGACCATAGTTGGGCTATGGCA
36945911 CTACGAATGT
Statistics
Matches: 98, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
32 6 0.06
33 65 0.66
34 3 0.03
35 24 0.24
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (32 bp):
ATGTAAGACCATAGTTGGGCTATGGCATTCTG
Found at i:36945805 original size:101 final size:100
Alignment explanation
Indices: 36945618--36945922 Score: 475
Period size: 101 Copynumber: 3.0 Consensus size: 100
36945608 ATTGACGGAG
* * * *
36945618 AAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTGGGCTATGGCATTTTAAT
1 AAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
* *
36945683 GAAAAGACCATAACTGAGTTATGGCACTATGAACGT
66 GATAAGA-CATAACTGGGTTATGGCACTATGAACGT
** *
36945719 AAGACCATGGTTGGACCATGATAGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTCTGAT
1 AAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
*
36945784 GATAAGACAATAATTGGGTTATGGCACTATGAACGT
66 GATAAGAC-ATAACTGGGTTATGGCACTATGAACGT
36945820 AAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
1 AAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
* *
36945885 GATAAGATCATAACTGGGTTATGGCACTACGAATGT
66 GATAAGA-CATAACTGGGTTATGGCACTATGAACGT
36945921 AA
1 AA
36945923 AGGATGAATT
Statistics
Matches: 186, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
100 1 0.01
101 184 0.99
102 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (100 bp):
AAGACCATGGTTGGACCATGGCAGTGTTTATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
GATAAGACATAACTGGGTTATGGCACTATGAACGT
Found at i:36946477 original size:27 final size:27
Alignment explanation
Indices: 36946441--36946525 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
36946431 TTTGGTTAAA
*
36946441 AATTAACCGAATTACCCGAATTAACCG
1 AATTACCCGAATTACCCGAATTAACCG
36946468 AATTACCCGAATTACCCGAATTAACCG
1 AATTACCCGAATTACCCGAATTAACCG
* * *
36946495 AATTACCCGAATTAACCAAATTAACCA
1 AATTACCCGAATTACCCGAATTAACCG
36946522 AATT
1 AATT
36946526 GAATCACTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (27 bp):
AATTACCCGAATTACCCGAATTAACCG
Found at i:36946516 original size:9 final size:9
Alignment explanation
Indices: 36946441--36946525 Score: 116
Period size: 9 Copynumber: 9.4 Consensus size: 9
36946431 TTTGGTTAAA
36946441 AATTAACCG
1 AATTAACCG
*
36946450 AATTACCCG
1 AATTAACCG
36946459 AATTAACCG
1 AATTAACCG
*
36946468 AATTACCCG
1 AATTAACCG
*
36946477 AATTACCCG
1 AATTAACCG
36946486 AATTAACCG
1 AATTAACCG
*
36946495 AATTACCCG
1 AATTAACCG
*
36946504 AATTAACCA
1 AATTAACCG
*
36946513 AATTAACCA
1 AATTAACCG
36946522 AATT
1 AATT
36946526 GAATCACTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 69 1.00
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:36946672 original size:18 final size:18
Alignment explanation
Indices: 36946629--36946675 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
36946619 ATTTAATTTT
*
36946629 ATAATTGGGTTGGGTTGG
1 ATAATTGGGTTGGGTTGA
*
36946647 GTAATTGGGTTGGGTTGA
1 ATAATTGGGTTGGGTTGA
*
36946665 ATACTTGGGTT
1 ATAATTGGGTT
36946676 TAGATTGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.40
Consensus pattern (18 bp):
ATAATTGGGTTGGGTTGA
Found at i:36954574 original size:3 final size:3
Alignment explanation
Indices: 36954566--36954603 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
36954556 TAAATGAACA
*
36954566 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36954604 ATTTGTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36955567 original size:21 final size:23
Alignment explanation
Indices: 36955543--36955587 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
36955533 GTTTGCAGGT
*
36955543 GAGCAGTTG-GGCGATGG-CAGA
1 GAGCAGGTGCGGCGATGGTCAGA
*
36955564 GAGCAGGTGCGGCGCTGGTCAGA
1 GAGCAGGTGCGGCGATGGTCAGA
36955587 G
1 G
36955588 GCGGTGGCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 7 0.35
23 5 0.25
ACGTcount: A:0.20, C:0.18, G:0.49, T:0.13
Consensus pattern (23 bp):
GAGCAGGTGCGGCGATGGTCAGA
Found at i:36955577 original size:22 final size:22
Alignment explanation
Indices: 36955543--36955594 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
36955533 GTTTGCAGGT
*
36955543 GAGCAGTTGGGCGATGG-CAGA
1 GAGCAGGTGGGCGATGGTCAGA
*
36955564 GAGCAGGTGCGGCGCTGGTCAGA
1 GAGCAGGTG-GGCGATGGTCAGA
36955587 G-GC-GGTGG
1 GAGCAGGTGG
36955595 CAGGGGGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.04
21 12 0.44
22 9 0.33
23 5 0.19
ACGTcount: A:0.17, C:0.17, G:0.52, T:0.13
Consensus pattern (22 bp):
GAGCAGGTGGGCGATGGTCAGA
Found at i:36959125 original size:30 final size:30
Alignment explanation
Indices: 36959079--36959172 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
36959069 TTTTATTATG
*
36959079 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
36959110 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
36959140 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
36959170 CCA
1 CCA
36959173 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:36959134 original size:15 final size:15
Alignment explanation
Indices: 36959089--36959166 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
36959079 CCAATATCTC
36959089 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
36959104 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
36959119 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
36959134 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
36959149 GATACCCATATCTTT
1 GATACCCATATCTTT
36959164 GAT
1 GAT
36959167 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:36963787 original size:30 final size:30
Alignment explanation
Indices: 36963741--36963864 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
36963731 TTTTATTATG
*
36963741 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
36963772 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
36963802 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
36963832 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
36963862 CCA
1 CCA
36963865 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:36963796 original size:15 final size:15
Alignment explanation
Indices: 36963751--36963858 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
36963741 CCAATATCTC
36963751 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
36963766 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
36963781 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
36963796 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
36963811 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
36963826 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
36963841 GATACCCATATCTTT
1 GATACCCATATCTTT
36963856 GAT
1 GAT
36963859 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:36970396 original size:14 final size:14
Alignment explanation
Indices: 36970377--36970424 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
36970367 TTAAACACTG
36970377 AAACCCTAAATCCT
1 AAACCCTAAATCCT
**
36970391 AAACCCTAAACATTAT
1 AAACCCT-AA-ATCCT
*
36970407 AAACCCTAAATCCA
1 AAACCCTAAATCCT
36970421 AAAC
1 AAAC
36970425 ACAAAAAACC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 13 0.48
15 4 0.15
16 10 0.37
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCCTAAATCCT
Found at i:36971397 original size:21 final size:20
Alignment explanation
Indices: 36971357--36971411 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
36971347 CGCTGAAATG
* * *
36971357 TAAACTCTAAACCTTAAACC
1 TAAACTCCAAGCCCTAAACC
*
36971377 TCAATCTCCAAGCCCTAAACC
1 T-AAACTCCAAGCCCTAAACC
*
36971398 TAAACTCTAAGCCC
1 TAAACTCCAAGCCC
36971412 AGAACACAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.36, G:0.04, T:0.22
Consensus pattern (20 bp):
TAAACTCCAAGCCCTAAACC
Found at i:36972254 original size:267 final size:269
Alignment explanation
Indices: 36971747--36972267 Score: 662
Period size: 267 Copynumber: 1.9 Consensus size: 269
36971737 GCGTCGCTAA
* * * * *
36971747 ATCCCAATCTTTGCTGCATTTTTTACAGTTCGCCACTAAAGCAATAAAAGAAACAATAAAACGGT
1 ATCCCAATATTTGCGGCATTTTTTACAATTCGCCACTAAAGAAATAAAAGAAACAATAAAACAGT
* * * *
36971812 ACCGTTTCGCTCAAATTTTTTCCTGAAATTAGTTATCGTTACCGGCGTTTCTCTCGAAACGCCGC
66 ACCGTTTCGCTCAAATTTTTTCCTCAAATTAGATATCGTTACCGGCGTTTCCCTCGAAACGCCAC
* *
36971877 TATATCCGAACCATTTCCGGCGTTTTTTAACATTGCGCCACTAAAGCATAAAAAGGAAACAACAA
131 CATATCCGAACCATTTCCGGCGTTTTTTAACAATGCGCCACTAAAGCATAAAAAGGAAACAACAA
36971942 AACGATACCGTTTTGCTCAAAATTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCCAGTAG
196 AACGATACCGTTTTGCTCAAAATTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCCAGTAG
36972007 CACCACTAT
261 CACCACTAT
* ** *
36972016 ATCCCAATATTTGCGGCTTTTTTTACAATGT-GCCACTAAAGAAATAAAATGAAGTAATAAAATA
1 ATCCCAATATTTGCGGCATTTTTTACAAT-TCGCCACTAAAGAAATAAAA-GAAACAATAAAACA
* * *
36972080 GTAGCGTTTTG-TCCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCCCT-GAAAACG
64 GTACCGTTTCGCT-CAAATTTTTTCCTCAAATTAGATATCGTTACCGGCGTTTCCCTCG-AAACG
* * * * * *
36972143 TCACCA-ATTC-AATC-TTTGGCGGTGTTTTTT-ACAATGCGCCACTAAAGCA-ATAAAATGAAA
127 CCACCATATCCGAACCATTT-CCGGCGTTTTTTAACAATGCGCCACTAAAGCATA-AAAAGGAAA
* * * * * *
36972203 CAATAAAACGGTACTGTTTTGCTCAAATTTTTTTCTCAAATTAGTTATCTTTACCGGCGTTTCTC
190 CAACAAAACGATACCGTTTTGCTCAAAATTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTC
36972268 ACAAAACGCC
Statistics
Matches: 216, Mismatches: 30, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
266 1 0.00
267 88 0.41
268 13 0.06
269 47 0.22
270 67 0.31
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (269 bp):
ATCCCAATATTTGCGGCATTTTTTACAATTCGCCACTAAAGAAATAAAAGAAACAATAAAACAGT
ACCGTTTCGCTCAAATTTTTTCCTCAAATTAGATATCGTTACCGGCGTTTCCCTCGAAACGCCAC
CATATCCGAACCATTTCCGGCGTTTTTTAACAATGCGCCACTAAAGCATAAAAAGGAAACAACAA
AACGATACCGTTTTGCTCAAAATTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCCAGTAG
CACCACTAT
Found at i:36972344 original size:133 final size:133
Alignment explanation
Indices: 36971750--36972357 Score: 565
Period size: 133 Copynumber: 4.5 Consensus size: 133
36971740 TCGCTAAATC
* * * *
36971750 CCAATC-TTTGCTGCATTTTTTACAGTTCGCCACTAAAGCAATAAAAG-AAACAATAAAACGGTA
1 CCAATCATTTGCGGCGTTTTTTACAATGCGCCACTAAAGC-AT-AAAGTAAACAATAAAACGGTA
* * * * * *
36971813 CCGTTTCGCTCAAATTTTTTCCTGAAATTAGTTATCGTTACCGGCGTTTCTCTCGAAACGCCGCT
64 CCGTTTTGCTCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCTCAAAACGCCACT
36971878 ATA-T
129 ATATT
* * * * * *
36971882 CCGAACCATTTCCGGCGTTTTTTAACATTGCGCCACTAAAGCATAAAAAGGAAACAACAAAACGA
1 CC-AATCATTTGCGGCGTTTTTT-ACAATGCGCCACTAAAGCAT--AAAGTAAACAATAAAACGG
* * * *
36971947 TACCGTTTTGCTCAAAATTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTC-CAGTAGCACC
62 TACCGTTTTGCTCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCTCA-AAACGCC
*
36972011 ACTATATC
126 ACTATATT
* * * * ** **
36972019 CCAAT-ATTTGCGGCTTTTTTTACAATGTGCCACTAAAGAAATAAAATGAAGTAATAAAATAGTA
1 CCAATCATTTGCGGCGTTTTTTACAATGCGCCACTAAAG-CATAAAGT-AAACAATAAAACGGTA
* * * *
36972083 GCGTTTTG-TCCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCCCTGAAAACGTCAC
64 CCGTTTTGCT-CAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCTCAAAACGCCAC
*
36972147 CA-ATT
128 TATATT
* *
36972152 -CAATC-TTTGGCGGTGTTTTTTACAATGCGCCACTAAAGCAATAAAATGAAACAATAAAACGGT
1 CCAATCATTT-GCGGCGTTTTTTACAATGCGCCACTAAAGC-ATAAAGT-AAACAATAAAACGGT
* * * * *
36972215 ACTGTTTTGCTCAAATTTTTTTCTCAAATTAGTTATCTTTACCGGCGTTTCTCACAAAACGCCGC
63 ACCGTTTTGCTCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCTCAAAACGCCAC
*
36972280 TAGATT
128 TATATT
** ** *
36972286 CCAATTTTTTGCGGCGTTTTTATGTAA-GCGCCACTAAAGTCATAAAGTAACCAA-AAAACGG-A
1 CCAATCATTTGCGGCGTTTTT-TACAATGCGCCACTAAAG-CATAAAGTAAACAATAAAACGGTA
36972348 GCCGTTTTGC
64 -CCGTTTTGC
36972358 AAACAAGTTT
Statistics
Matches: 387, Mismatches: 68, Indels: 41
0.78 0.14 0.08
Matches are distributed among these distances:
132 10 0.03
133 124 0.32
134 101 0.26
135 71 0.18
136 79 0.20
137 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (133 bp):
CCAATCATTTGCGGCGTTTTTTACAATGCGCCACTAAAGCATAAAGTAAACAATAAAACGGTACC
GTTTTGCTCAAATTTTTTCCTCAAATTAGATATCTTTACCGGCGTTTCTCTCAAAACGCCACTAT
ATT
Found at i:36975915 original size:46 final size:46
Alignment explanation
Indices: 36975848--36976056 Score: 332
Period size: 46 Copynumber: 4.6 Consensus size: 46
36975838 TTTGAGTACT
* * * * *
36975848 TCTGATCAAGAGATAAAGTGATAAGTGTTAGCTTTAACTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
36975894 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
36975940 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
36975986 TCTCATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
36976032 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
36976057 ATCATACGTA
Statistics
Matches: 155, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
44 12 0.08
45 5 0.03
46 138 0.89
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:36989971 original size:13 final size:12
Alignment explanation
Indices: 36989944--36989969 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36989934 TTAGAAAAGG
36989944 TTAATTCAATTT
1 TTAATTCAATTT
36989956 TTAATTCAATTT
1 TTAATTCAATTT
36989968 TT
1 TT
36989970 TACAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAATTCAATTT
Found at i:36990444 original size:13 final size:13
Alignment explanation
Indices: 36990423--36990465 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
36990413 CATTGGTTTT
36990423 TAATATTTTTATA
1 TAATATTTTTATA
* *
36990436 TAGTATTTTTAAA
1 TAATATTTTTATA
* *
36990449 TAATTTTTTTATC
1 TAATATTTTTATA
36990462 TAAT
1 TAAT
36990466 TTAAATATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (13 bp):
TAATATTTTTATA
Found at i:36991314 original size:27 final size:29
Alignment explanation
Indices: 36991255--36991325 Score: 112
Period size: 27 Copynumber: 2.6 Consensus size: 29
36991245 AAAAATAAAA
36991255 ATTTACCAAAATAT-TACAACTTTTTTTT
1 ATTTACCAAAATATATACAACTTTTTTTT
*
36991283 ATTTACCAAAACATATA-AAC-TTTTTTT
1 ATTTACCAAAATATATACAACTTTTTTTT
36991310 ATTTACCAAAATATAT
1 ATTTACCAAAATATAT
36991326 CAAATAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.55
28 16 0.40
29 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTTACCAAAATATATACAACTTTTTTTT
Found at i:36991423 original size:27 final size:27
Alignment explanation
Indices: 36991393--36991468 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
36991383 TACTGGTCAC
*
36991393 GCCAATGATATTGGCGGCACCAAAGGT
1 GCCAATGACATTGGCGGCACCAAAGGT
* *
36991420 GCCAA-AACCATTGGCGGCACCAATGGT
1 GCCAATGA-CATTGGCGGCACCAAAGGT
*
36991447 GCCAATGCCATTGGCGGCACCA
1 GCCAATGACATTGGCGGCACCA
36991469 GTTGGTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.98
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.16
Consensus pattern (27 bp):
GCCAATGACATTGGCGGCACCAAAGGT
Found at i:36991520 original size:4 final size:4
Alignment explanation
Indices: 36991511--36991624 Score: 72
Period size: 4 Copynumber: 26.2 Consensus size: 4
36991501 CAGAAGGAGG
* *
36991511 GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA GAAAA GGAAA G-GA GAAGA
1 GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA G-AAA -GAAA GAAA GAA-A
36991559 GAAA -AAA GGAAA GAAA GGAGAA GAAAA GGAGAA GAGAA GAAA -AAA GAAA
1 GAAA GAAA -GAAA GAAA -GA-AA G-AAA -GA-AA GA-AA GAAA GAAA GAAA
*
36991608 GAAA GAAG GAAA GAAA G
1 GAAA GAAA GAAA GAAA G
36991625 GGAAATGAGA
Statistics
Matches: 90, Mismatches: 6, Indels: 28
0.73 0.05 0.23
Matches are distributed among these distances:
3 8 0.09
4 44 0.49
5 30 0.33
6 8 0.09
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:36991555 original size:24 final size:22
Alignment explanation
Indices: 36991504--36991625 Score: 95
Period size: 24 Copynumber: 5.2 Consensus size: 22
36991494 GTGGGGGCAG
36991504 AAGGAG-GGAAAGAAAGAAAGA
1 AAGGAGAGGAAAGAAAGAAAGA
36991525 AAGGAGAGGAAAGAAAGAAAAGGA
1 AAGGAGAGGAAAGAAAG-AAA-GA
36991549 AAGGAGAAGAGAAA-AAAGGAAAGA
1 AAGGAG-AG-GAAAGAAA-GAAAGA
*
36991573 AAGGAGAAGAAAAGGAGAAGAGAAGA
1 AAGGAG-AGGAAA-GA-AAGA-AAGA
** * *
36991599 AAAAAGAAAGAAAGAAGGAAAGA
1 AAGGAG-AGGAAAGAAAGAAAGA
36991622 AAGG
1 AAGG
36991626 GAAATGAGAA
Statistics
Matches: 83, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
21 6 0.07
22 10 0.12
23 12 0.14
24 22 0.27
25 13 0.16
26 20 0.24
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (22 bp):
AAGGAGAGGAAAGAAAGAAAGA
Found at i:36991588 original size:11 final size:11
Alignment explanation
Indices: 36991539--36991593 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
36991529 AGAGGAAAGA
36991539 AAGAAAAGGA-
1 AAGAAAAGGAG
*
36991549 AAGGAGAA-GAG
1 AA-GAAAAGGAG
36991560 AA-AAAAGGA-
1 AAGAAAAGGAG
36991569 AAG-AAAGGAG
1 AAGAAAAGGAG
36991579 AAGAAAAGGAG
1 AAGAAAAGGAG
36991590 AAGA
1 AAGA
36991594 GAAGAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
9 11 0.30
10 9 0.24
11 17 0.46
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (11 bp):
AAGAAAAGGAG
Found at i:36991654 original size:40 final size:39
Alignment explanation
Indices: 36991514--36991655 Score: 139
Period size: 40 Copynumber: 3.5 Consensus size: 39
36991504 AAGGAGGGAA
*
36991514 AGAAAGAAAGAAAGGAGAGGAAAGAAAGAAAAGGAAAGGAGAAG
1 AGAAA-AAAGAAA-GA-A-GAAGGAAAGAAAAGGAAA-GAGAAG
36991558 AGAAAAAAGGAAAG-A-AAGGAGAAGAAAAGGAGAAGAG-A-
1 AGAAAAAA-GAAAGAAGAAGGA-AAGAAAAGGA-AAGAGAAG
*
36991596 AGAAAAAAGAAAGAAAGAAGGAAAGAAAGGGAAATGAGAAG
1 AGAAAAAAGAAAG-AAGAAGGAAAGAAAAGGAAA-GAGAAG
*
36991637 AGAAAAAAAAAAGAAGAAG
1 AGAAAAAAGAAAGAAGAAG
36991656 AAGAGGGAAG
Statistics
Matches: 86, Mismatches: 3, Indels: 22
0.77 0.03 0.20
Matches are distributed among these distances:
37 5 0.06
38 10 0.12
39 18 0.21
40 25 0.29
41 15 0.17
43 4 0.05
44 9 0.10
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (39 bp):
AGAAAAAAGAAAGAAGAAGGAAAGAAAAGGAAAGAGAAG
Found at i:36991713 original size:19 final size:19
Alignment explanation
Indices: 36991689--36991726 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36991679 GGAAAAAGGT
36991689 AATTTTATTTATAA-ATTTG
1 AATTTT-TTTATAATATTTG
*
36991708 AATTTTTTTGTAATATTTG
1 AATTTTTTTATAATATTTG
36991727 TGTTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (19 bp):
AATTTTTTTATAATATTTG
Found at i:36993259 original size:10 final size:10
Alignment explanation
Indices: 36993244--36993270 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36993234 AGTGCACGGT
36993244 GACGTTGGAG
1 GACGTTGGAG
36993254 GACGTTGGAG
1 GACGTTGGAG
36993264 GACGTTG
1 GACGTTG
36993271 CAGTGCAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.48, T:0.22
Consensus pattern (10 bp):
GACGTTGGAG
Found at i:36996061 original size:30 final size:30
Alignment explanation
Indices: 36996027--36996198 Score: 281
Period size: 30 Copynumber: 5.7 Consensus size: 30
36996017 ACTCCTTTTC
36996027 AGCCACACCTTTTCCACCACCAACTCCACT
1 AGCCACACCTTTTCCACCACCAACTCCACT
*
36996057 AGCCACTCCTTTTCCACCACCAACTCCACT
1 AGCCACACCTTTTCCACCACCAACTCCACT
* *
36996087 AGCCACTCTTTTTCCACCACCAACTCCACT
1 AGCCACACCTTTTCCACCACCAACTCCACT
36996117 AGCCACACCTTTTCCACCACCAACTCCACT
1 AGCCACACCTTTTCCACCACCAACTCCACT
* * *
36996147 AGCCACTCTTTTTCCATCACCAACTCCACT
1 AGCCACACCTTTTCCACCACCAACTCCACT
*
36996177 AGCCACACCTTCTCCACCACCA
1 AGCCACACCTTTTCCACCACCA
36996199 CTTGTACCTA
Statistics
Matches: 131, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 131 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
AGCCACACCTTTTCCACCACCAACTCCACT
Found at i:36996802 original size:25 final size:25
Alignment explanation
Indices: 36996686--36996896 Score: 147
Period size: 25 Copynumber: 8.7 Consensus size: 25
36996676 TTGTTATTAT
36996686 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TTAATATTATATTATGTA
* *
36996710 TATATTCTTT--TAATATATTA-G-G
1 TATATT-TTTAATATTATATTATGTA
* *
36996732 TATATTTTAAAT-TTATATTACGTA
1 TATATTTTTAATATTATATTATGTA
* * *
36996756 TATATATTTT-ATACTATTTTATTTA
1 TATAT-TTTTAATATTATATTATGTA
* *
36996781 TATATCTTTAATATTATATTATTTA
1 TATATTTTTAATATTATATTATGTA
* *
36996806 TATATATTTTACATGTTATCTTATGTA
1 TATAT-TTTTA-ATATTATATTATGTA
* *
36996833 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
* * *
36996855 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
*
36996880 CATATTTTTAATATTAT
1 TATATTTTTAATATTAT
36996897 CACGTATTTT
Statistics
Matches: 146, Mismatches: 27, Indels: 27
0.73 0.14 0.14
Matches are distributed among these distances:
21 2 0.01
22 35 0.24
23 6 0.04
24 19 0.13
25 64 0.44
26 4 0.03
27 16 0.11
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATTTTTAATATTATATTATGTA
Found at i:36996865 original size:74 final size:73
Alignment explanation
Indices: 36996682--36996897 Score: 169
Period size: 74 Copynumber: 3.0 Consensus size: 73
36996672 TTTTTTGTTA
* * * * * *
36996682 TTAT-TATATTTCTTAATATTATATTATATATAT-TCTTTTA-A-TATATTAGGT--ATATTTTA
1 TTATGTATATATCTT-ATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTT
*
36996741 AAT-TTATA
65 AATATTATC
* * * * * * * *
36996749 TTACGTATATATATTTTATACTATTTTATTTATATATCTTTAATATTATATTATTTATATATATT
1 TTA--TGTATATATCTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAT-TT
*
36996814 TTACATGTTATC
63 TTA-ATATTATC
* *
36996826 TTATGTATATATCTTA-ACTATATTATGTATGTATTTTTAACACTATATTATGTACATATTTTTA
1 TTATGTATATATCTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTA
36996890 ATATTATC
66 ATATTATC
36996898 ACGTATTTTT
Statistics
Matches: 117, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
67 3 0.03
69 16 0.14
70 14 0.12
71 1 0.01
72 15 0.13
73 5 0.04
74 39 0.33
75 15 0.13
76 2 0.02
77 7 0.06
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (73 bp):
TTATGTATATATCTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTA
ATATTATC
Found at i:36996895 original size:20 final size:19
Alignment explanation
Indices: 36996869--36996924 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
36996859 TTTTTAACAC
36996869 TATATTATGTACATATTTT
1 TATATTATGTACATATTTT
* *
36996888 TAATATTAT-CACGTATTTT
1 T-ATATTATGTACATATTTT
*
36996907 TTTATATATGTACATATT
1 TATAT-TATGTACATATT
36996925 GATGTAGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 13 0.45
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (19 bp):
TATATTATGTACATATTTT
Found at i:36997066 original size:16 final size:15
Alignment explanation
Indices: 36997042--36997089 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
36997032 TAATTATTAT
*
36997042 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
36997058 TATTTTAATATTTTA
1 TATTTTAATATTTTA
36997073 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
36997089 T
1 T
36997090 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:36997077 original size:7 final size:8
Alignment explanation
Indices: 36997042--36997093 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
36997032 TAATTATTAT
*
36997042 TATTCTAA
1 TATTTTAA
*
36997050 TATTTTGA
1 TATTTTAA
36997058 TATTTTAA
1 TATTTTAA
36997066 TATTTT-A
1 TATTTTAA
36997073 TATTTTATA
1 TATTTTA-A
*
36997082 TATTTTAT
1 TATTTTAA
36997090 TATT
1 TATT
36997094 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:36998652 original size:12 final size:12
Alignment explanation
Indices: 36998635--36998670 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
36998625 AACATTTTGA
36998635 CATTCATGCATT
1 CATTCATGCATT
36998647 CATTCATGCATT
1 CATTCATGCATT
*
36998659 CATTCATACATT
1 CATTCATGCATT
36998671 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:37006145 original size:45 final size:41
Alignment explanation
Indices: 37006047--37006154 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 41
37006037 TTATGCTTAA
*
37006047 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAGGATTAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGGATTAG
** *
37006088 GGCGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAA-GATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A--A--AAAAAAAGGATTAG
*
37006133 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
37006155 CTAATGAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 22 0.40
42 1 0.02
44 10 0.18
45 16 0.29
46 6 0.11
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.15
Consensus pattern (41 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGGATTAG
Found at i:37007103 original size:69 final size:69
Alignment explanation
Indices: 37006929--37007103 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
37006919 CTTTCCAAGG
* ** *
37006929 AAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
37006994 TTTT
66 TTTT
* ** * *
37006998 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
37007063 TGTTTT
64 TGTTTT
** *
37007069 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
37007104 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:37007457 original size:75 final size:72
Alignment explanation
Indices: 37007107--37007791 Score: 481
Period size: 72 Copynumber: 8.9 Consensus size: 72
37007097 TAAGCCTTTT
* *
37007107 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
37007171 GTAATTTC
65 GTAATTTC
* * **
37007179 AATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGATAAATGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT---CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
37007244 GAGGTAATTTC
62 GAGGTAATTTC
* * ** * *
37007255 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
37007320 TATTTTC
66 TAATTTC
*
37007327 AATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACA
1 AATTTCTGTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
37007391 CGCTGAGGTAATTTC
58 CGCTGAGGTAATTTC
* *
37007406 AATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCT
1 AATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCT
**
37007470 GAGGTCTTTTC
62 GAGGTAATTTC
** * * * * *
37007481 AATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCA-ACT-C-ATATTGCTAGAGGTGAGTT
1 AATTTCTGTT-TTC-A-----------AAAATCAACTCATATTGCGAGA--GGT-GAGTTGAG--
37007543 GAGCCTCAGGACACGCTGAGGTAATTTC
48 ---CCTCAGGACACGCTGAGGTAATTTC
* * ** * *
37007571 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
37007636 TATTTTC
66 TAATTTC
* *
37007643 AA-TT-TGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAT
1 AATTTCTGTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
* *
37007705 GTTGAGGTATTTTC
59 GCTGAGGTAATTTC
*
37007719 AATTTCTGTTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA-GACAC
1 AATTTCTG---TTTT---CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGACAC
* *
37007783 ACTGTGGTA
59 GCTGAGGTA
37007792 TTTTTTCAAT
Statistics
Matches: 498, Mismatches: 59, Indels: 106
0.75 0.09 0.16
Matches are distributed among these distances:
70 7 0.01
71 4 0.01
72 99 0.20
73 1 0.00
74 35 0.07
75 69 0.14
76 86 0.17
77 51 0.10
78 14 0.03
79 28 0.06
80 39 0.08
81 7 0.01
84 2 0.00
85 1 0.00
86 4 0.01
87 16 0.03
88 1 0.00
89 3 0.01
90 25 0.05
92 4 0.01
93 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:37007497 original size:14 final size:14
Alignment explanation
Indices: 37007478--37007505 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37007468 CTGAGGTCTT
37007478 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
37007492 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
37007506 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:37007727 original size:238 final size:238
Alignment explanation
Indices: 37007268--37007728 Score: 617
Period size: 238 Copynumber: 1.9 Consensus size: 238
37007258 TTCTGTTTTC
* * * *
37007268 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
** *
37007333 TGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACACGCTGAG
66 TGTTTTC----AAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAG-T-ACACGCTGAG
*
37007398 GTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
125 GTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
*
37007463 ACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
190 ACATGCTGAGGTATTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
* ** *
37007512 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* * *
37007577 TGTTTTC-AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATT
66 TGTTTTCAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTC-AGTACACGCTGAGGTAAT
* *
37007640 TTCAA-TT-TGTTT-TCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCA
130 TTCAATTTCTGTTTGTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
*
37007702 CATGTTGAGGTATTTTCAATTTCTGTT
191 CATGCTGAGGTATTTTCAATTTCTGTT
37007729 TTTTTAAAAA
Statistics
Matches: 193, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
234 2 0.01
235 5 0.03
236 2 0.01
237 18 0.09
238 66 0.34
239 35 0.18
240 1 0.01
244 64 0.33
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (238 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGTACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
TGAGGTATTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
Found at i:37007792 original size:154 final size:146
Alignment explanation
Indices: 37007508--37007795 Score: 355
Period size: 154 Copynumber: 1.9 Consensus size: 146
37007498 TTCTGTTCGT
*
37007508 AAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* * * **
37007573 TTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
66 TTTCTGTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACTGAGGTA
37007638 TTTTCAATTTGTTTTC
131 TTTTCAATTTGTTTTC
* * * *
37007654 AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTT
**
37007718 CAATTTCTGTTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTC-AGACA
63 CAATTTCTG---TTTT---AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC-TCAAGACA
*
37007782 CACTGTGGTATTTT
121 CACTGAGGTATTTT
37007796 TTCAATTCAT
Statistics
Matches: 119, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
145 2 0.02
146 40 0.34
148 23 0.19
151 4 0.03
154 48 0.40
155 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (146 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACACTGAGGTA
TTTTCAATTTGTTTTC
Found at i:37007802 original size:80 final size:79
Alignment explanation
Indices: 37007584--37007795 Score: 237
Period size: 80 Copynumber: 2.7 Consensus size: 79
37007574 TTCTGTTTTC
* * **
37007584 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC--GTTGAGGTATTTTCAA-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTACACATGTT-AGGTATTTTCAAT
37007645 TT-TG--TTTTCAAAA
64 TTCTGTTTTTTCAAAA
* * *
37007658 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTACACATGTT-AGGTATTTTCAATT
*
37007723 TCTGTTTTTTTAAAA
65 TCTGTTTTTTCAAAA
37007738 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAG-ACACACTG-T-GGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGTACACA-TGTTAGGTATTTT
37007796 TTCAATTCAT
Statistics
Matches: 120, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
73 1 0.01
74 38 0.32
76 16 0.13
77 2 0.02
78 10 0.08
80 48 0.40
81 5 0.04
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (79 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTACACATGTTAGGTATTTTCAATTT
CTGTTTTTTCAAAA
Found at i:37008009 original size:72 final size:73
Alignment explanation
Indices: 37007928--37008069 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
37007918 TCAAAATCAG
* *
37007928 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTGTTTT
37007992 AATTTCAA
66 AATTTCAA
* * *
37008000 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTTTGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTGTTTT
37008065 AATTT
66 AATTT
37008070 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.14, G:0.24, T:0.40
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTGTTTT
AATTTCAA
Found at i:37008227 original size:73 final size:72
Alignment explanation
Indices: 37008080--37008488 Score: 511
Period size: 73 Copynumber: 5.5 Consensus size: 72
37008070 ATGTTTCAAA
* * * *
37008080 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACTCTGAGGTAATTTCAATTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
*
37008144 GTTTGTA
66 GTTTGTC
** * *
37008151 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTC
37008216 TGTTT-TC
65 TGTTTGTC
* ** * *
37008223 AAAAAT-AGCTCATATTGC-AGAGGTGAGTTGAGCCTTGGCTCACACACTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTGAGGTAATTTCAATT
*
37008286 TCTGTTTTAATTTCTGTTTT
63 TCTG-------TT-TG--TC
*
37008306 TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
37008371 GTTTGTC
66 GTTTGTC
37008378 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTC
37008443 TGTTTGTC
65 TGTTTGTC
37008451 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
37008489 GGCTCATATG
Statistics
Matches: 294, Mismatches: 25, Indels: 36
0.83 0.07 0.10
Matches are distributed among these distances:
70 16 0.05
71 50 0.17
72 66 0.22
73 96 0.33
74 2 0.01
75 2 0.01
79 2 0.01
80 1 0.00
82 25 0.09
83 6 0.02
84 12 0.04
85 16 0.05
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
GTTTGTC
Found at i:37008299 original size:12 final size:13
Alignment explanation
Indices: 37008277--37008305 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37008267 CACTGAGGTA
37008277 TTTTCAATTTCTG
1 TTTTCAATTTCTG
37008290 TTTT-AATTTCTG
1 TTTTCAATTTCTG
37008302 TTTT
1 TTTT
37008306 TAAAATCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:37008526 original size:14 final size:14
Alignment explanation
Indices: 37008507--37008535 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37008497 TGCTGAGGTC
37008507 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
37008521 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
37008535 T
1 T
37008536 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:37008564 original size:164 final size:159
Alignment explanation
Indices: 37008360--37009161 Score: 924
Period size: 164 Copynumber: 5.1 Consensus size: 159
37008350 GCTGAGGTAA
* *
37008360 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTG-TTCT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
37008425 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
64 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
37008490 GCTCATATGCTGAGGTCTTTTCAATTTCTGTT
129 GCTCACATGCTGAGGTCTTTTCAATTTCTG-T
37008522 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTTC-T---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* * *
37008587 GCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
62 GCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* **
37008652 TCGG---ACACGCTGAGGTAATTTCAATTTCTG-
126 TCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
* * *
37008682 ---C----T-TG-TC-AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GGCTCACATG
1 TTTCAATTTCTGTTCTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACG
** * * *
37008736 CTGAGGTCTTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
63 CTGAGGTAATTTCAATTTCTGTTTGT---CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
37008801 CTCAGG---ACACGCTGAGGTATTTTTAAATTTCTG-
125 CTC-GGCTCACATGCTGAGGT-CTTTTCAATTTCTGT
* * *
37008834 -------TT-T-TTC-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACAAGCTG
1 TTTCAATTTCTGTTCTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
37008889 AGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
66 AGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
37008954 TCACATGCTGAGGTCTTTTCAATTTCTGT
131 TCACATGCTGAGGTCTTTTCAATTTCTGT
* * *
37008983 TCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACA
1 T-TTCAATTTCTG---TTC-TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
37009048 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTC
61 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
37009113 TCGGCTCACATGCTGAGGTCTTTTTAATTTCTACT
126 TCGGCTCACATGCTGAGGTCTTTTCAATTTCT-GT
37009148 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
37009162 TTTTCAATTT
Statistics
Matches: 564, Mismatches: 41, Indels: 71
0.83 0.06 0.11
Matches are distributed among these distances:
145 2 0.00
146 38 0.07
147 51 0.09
148 23 0.04
149 11 0.02
150 64 0.11
151 16 0.03
152 52 0.09
153 3 0.01
157 3 0.01
158 1 0.00
161 4 0.01
162 38 0.07
164 200 0.35
165 58 0.10
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (159 bp):
TTTCAATTTCTGTTCTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
TCACATGCTGAGGTCTTTTCAATTTCTGT
Found at i:37008643 original size:74 final size:72
Alignment explanation
Indices: 37008542--37008989 Score: 581
Period size: 74 Copynumber: 6.0 Consensus size: 72
37008532 TGTTCGTAAA
*
37008542 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-TTTTCAATTT
37008607 CTGTTTTTC
64 CTGTTTTTC
*
37008616 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTCT
* *
37008681 GCTTGTC
66 GTTTTTC
* * * *
37008688 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAATT
***
37008753 TCTGTTCGTAAAA
63 TCTGTT--T-TTC
* *
37008766 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-TTTTCAATTT
37008831 CTGTTTTTC
64 CTGTTTTTC
* * *
37008840 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTCAATTTC
*
37008905 TGTTTGTC
65 TGTTTTTC
* * *
37008913 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAATT
*
37008978 TCTGTTCTTC
63 TCTGTTTTTC
37008988 AA
1 AA
37008990 TTTCTGTTTT
Statistics
Matches: 327, Mismatches: 36, Indels: 21
0.85 0.09 0.05
Matches are distributed among these distances:
72 55 0.17
73 67 0.20
74 88 0.27
75 54 0.17
76 11 0.03
77 15 0.05
78 35 0.11
79 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTC
Found at i:37008832 original size:462 final size:455
Alignment explanation
Indices: 37007920--37009116 Score: 1674
Period size: 462 Copynumber: 2.6 Consensus size: 455
37007910 CTACTTTTTC
* * * * *
37007920 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
* ** *
37007985 GTGTT-T-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACATGCTGAGGTA
66 GT-TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTC
* * * *
37008045 TTTTCAATTTTTGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGT
129 TTTTCAATTTCTG-TTTTTCAATTTCTGTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
37008110 TGAGCCTCA--AGACTCTGAGGTAATTTCAATTTTTGTTTGTAAAAAATCAACTCATATTGCGAG
192 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAG
** * * *
37008173 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTTAATTTATGTTTTCAAAAATAGCTCATAT
257 AGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTTCAATTTATGTTGTCAAAAATAACTCATAT
* *
37008238 TGCAGAGGTGAGTTGAGCCTTGGCTCACACACTGAGGTATTTTCAATTTCTGTTTTAATTTCTGT
321 TGCAGAGGTGAGTTAAGCCTCGGCTCACACACTGAGGTATTTTCAATTTCTG------TTTCTGT
**** * *
37008303 TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATT
380 AAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTAAATT
37008368 TCTGTTTGTCA
445 TCTGTTTGTCA
**
37008379 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
*
37008444 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCATATGCTGAGGTCTT
66 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTT
37008509 TTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
131 TTCAATTTCTGTTTTTCAATTTCTGTT--TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
37008574 AGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGA
194 AGCCTCAGGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGA
*
37008639 GGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTCTGCTTGTCAAAAATTAACTCATAT
258 GGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTATG-TTGTCAAAAA-TAACTCATAT
** *
37008704 TGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG-TTC-GTAAAAA
321 TGC-AGAGGTGAGTTAAGCCTCGGCTCACACACTGAGGTATTTTCAATTTCTGTTTCTGT-AAAA
*
37008767 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
384 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTA-ATTTAAATTTC
*
37008832 TGTTTTTCA
447 TGTTTGTCA
* *
37008841 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
*
37008906 GTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTT
66 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTT
* * *
37008971 TTCAATTTCTGTTCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTG
131 TTCAATTTCTGTTTTTCAATTTCTG--TTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
37009036 AGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAG
194 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAG
*
37009101 GTGAGTTGAGTCTCGG
259 GTGAGTTGAGCCTCGG
37009117 CTCACATGCT
Statistics
Matches: 663, Mismatches: 57, Indels: 34
0.88 0.08 0.05
Matches are distributed among these distances:
458 2 0.00
459 65 0.10
460 75 0.11
461 82 0.12
462 284 0.43
463 1 0.00
464 37 0.06
465 61 0.09
466 12 0.02
467 44 0.07
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (455 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTT
TTCAATTTCTGTTTTTCAATTTCTGTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTATGTTGTCAAAAATAACTCATATTGCAG
AGGTGAGTTAAGCCTCGGCTCACACACTGAGGTATTTTCAATTTCTGTTTCTGTAAAAAAAATCA
ACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTAAATTTCTGTTTGTCA
Found at i:37008951 original size:225 final size:225
Alignment explanation
Indices: 37008521--37009116 Score: 930
Period size: 224 Copynumber: 2.6 Consensus size: 225
37008511 CAATTTCTGT
*
37008521 TTTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
37008585 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
37008650 CCTC-GGACACGCTGAGGTAATTTCAATTTCTGCTTGTCAAAAATTAACTCATATTGCGAGAGGT
131 CCTCGGGACAAGCTGAGGTAATTTCAATTTCTGCTTGTCAAAAATTAACTCATATTGCGAGAGGT
37008714 GAGTTAAGCCTCGGCTCACATGCTGAGGTC
196 GAGTTAAGCCTCGGCTCACATGCTGAGGTC
37008744 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
*
37008809 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAG
66 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
37008874 CCTCGGGACAAGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGT
131 CCTCGGGACAAGCTGAGGTAATTTCAATTTCTGCTTGTCAAAAATTAACTCATATTGCGAGAGGT
*
37008939 GAGTTGAGCCTCGGCTCACATGCTGAGGTC
196 GAGTTAAGCCTCGGCTCACATGCTGAGGTC
*
37008969 TTTTCAATTTCTGTTCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAA-AGGTGAG
1 TTTTCAATTTCTGTTCGT-AA------------AAAAAAATCAACTCATATTGC-AAGAGGTGAG
* * * * *
37009033 TTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCG
52 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
*
37009097 AGAGGTGAGTTGAGTCTCGG
117 AGAGGTGAGTTGAGCCTCGG
37009117 CTCACATGCT
Statistics
Matches: 344, Mismatches: 13, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
223 18 0.05
224 113 0.33
225 104 0.30
226 2 0.01
237 53 0.15
238 52 0.15
239 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (225 bp):
TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCGGGACAAGCTGAGGTAATTTCAATTTCTGCTTGTCAAAAATTAACTCATATTGCGAGAGGT
GAGTTAAGCCTCGGCTCACATGCTGAGGTC
Found at i:37008990 original size:14 final size:14
Alignment explanation
Indices: 37008971--37009003 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
37008961 CTGAGGTCTT
37008971 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
*
37008985 TTCAATTTCTGTTT
1 TTCAATTTCTGTTC
37008999 TTCAA
1 TTCAA
37009004 AAAAATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:37009063 original size:89 final size:88
Alignment explanation
Indices: 37008896--37009072 Score: 257
Period size: 89 Copynumber: 2.0 Consensus size: 88
37008886 CTGAGGTAAT
* * *
37008896 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGC-CACACG
**
37008961 CTGAGGTCTTTTCAATTTCTGTTC
65 CTGAGGTAATTTCAATTTCTGTTC
* *
37008985 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG-GACAC
1 TTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCCACAC
37009049 GCTGAGGTAATTTCAATTTCTGTT
64 GCTGAGGTAATTTCAATTTCTGTT
37009073 TGTCAAAAAT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
89 41 0.52
91 38 0.48
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (88 bp):
TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCCACACGC
TGAGGTAATTTCAATTTCTGTTC
Found at i:37009144 original size:75 final size:74
Alignment explanation
Indices: 37008985--37009131 Score: 206
Period size: 73 Copynumber: 2.0 Consensus size: 74
37008975 ATTTCTGTTC
* *
37008985 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACG
1 TTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACG
37009050 CTGAGGTAAT
65 CTGAGGTAAT
* * * *
37009060 TTCAATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACAT
1 TTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--CACAC
37009124 GCTGAGGT
64 GCTGAGGT
37009132 CTTTTTAATT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
73 37 0.58
75 27 0.42
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (74 bp):
TTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGC
TGAGGTAAT
Found at i:37009966 original size:30 final size:30
Alignment explanation
Indices: 37009919--37010062 Score: 236
Period size: 30 Copynumber: 4.8 Consensus size: 30
37009909 CCTTTTCTCA
37009919 ACTAGCC-CACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
37009948 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
37009978 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
37010008 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
37010038 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
37010063 CTTGTACCTA
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
29 7 0.07
30 98 0.93
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:37010011 original size:60 final size:60
Alignment explanation
Indices: 37009919--37010062 Score: 272
Period size: 60 Copynumber: 2.4 Consensus size: 60
37009909 CCTTTTCTCA
37009919 ACTAGCC-CACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
37009978 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
*
37010038 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
37010063 CTTGTACCTA
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
59 7 0.08
60 76 0.92
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (60 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
Found at i:37010650 original size:21 final size:20
Alignment explanation
Indices: 37010626--37010685 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
37010616 ATTACGTATA
37010626 TATATATTTATACTATTTTAT
1 TATATATTTATA-TATTTTAT
*
37010647 TATATATCTT-TAATATTATAT
1 TATATAT-TTAT-ATATTTTAT
* *
37010668 TATTTATATATATATTTT
1 TATATATTTATATATTTT
37010686 TACATGTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 7 0.22
21 22 0.69
22 3 0.09
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TATATATTTATATATTTTAT
Found at i:37010687 original size:14 final size:14
Alignment explanation
Indices: 37010641--37010687 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
37010631 ATTTATACTA
37010641 TTTTAT-TATATAT
1 TTTTATATATATAT
*
37010654 CTTTA-ATATTATAT
1 TTTTATATA-TATAT
37010668 TATTTATATATATAT
1 T-TTTATATATATAT
37010683 TTTTA
1 TTTTA
37010688 CATGTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
13 6 0.21
14 9 0.32
15 10 0.36
16 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATATATATAT
Found at i:37010708 original size:30 final size:29
Alignment explanation
Indices: 37010647--37010708 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
37010637 ACTATTTTAT
*
37010647 TATATATCTTTAATATTATATTATTTATA
1 TATATATCTTTAATATTATATTATGTATA
* * *
37010676 TATATATTTTTACATGTTATCTTATGTATA
1 TATATATCTTTA-ATATTATATTATGTATA
37010706 TAT
1 TAT
37010709 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TATATATCTTTAATATTATATTATGTATA
Found at i:37010723 original size:22 final size:24
Alignment explanation
Indices: 37010697--37010755 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
37010687 ACATGTTATC
37010697 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
37010719 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
37010744 TTATGTACATAT
1 TTATGTATATAT
37010756 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:37010745 original size:25 final size:25
Alignment explanation
Indices: 37010713--37010761 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
37010703 ATATATCTTA
**
37010713 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
37010738 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
37010762 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:37010762 original size:102 final size:99
Alignment explanation
Indices: 37010543--37010767 Score: 223
Period size: 102 Copynumber: 2.3 Consensus size: 99
37010533 TTTTTTTTGT
37010543 TATTATT--ATATTTCTTAATATTATATTATATTATATATATTCTTTTAATATATTAGGTATATT
1 TATTATTACATATTT-TTAATATTATATTATATTATATATATTCTTTTAATATATTAGGTATATT
* *
37010606 TTAAATTTATATTACGTATATATATATTTATACTA
65 TTAAATCTATATTACGTATATATATATTTACACTA
* * * * *
37010641 TTTTATTATATATCTTTAATATTATATTAT-TTATATATATAT-TTTTACATGTTATCTTATGTA
1 TATTATTACATATTTTTAATATTATATTATATTATATATAT-TCTTTTA-A---TATATTAGGTA
* *
37010704 TATATCTT-AA-CTATATTATGTATGTAT-T-TTTAACACTA
61 TAT-T-TTAAATCTATATTACGTATATATATATTT-ACACTA
37010742 TATTATGTACATATTTTTAATATTAT
1 TATTAT-TACATATTTTTAATATTAT
37010768 CACGTATTTT
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
98 21 0.20
99 17 0.16
100 8 0.08
101 11 0.10
102 43 0.41
103 3 0.03
104 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (99 bp):
TATTATTACATATTTTTAATATTATATTATATTATATATATTCTTTTAATATATTAGGTATATTT
TAAATCTATATTACGTATATATATATTTACACTA
Found at i:37010766 original size:20 final size:19
Alignment explanation
Indices: 37010740--37010795 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
37010730 TTTTTAACAC
37010740 TATATTATGTACATATTTT
1 TATATTATGTACATATTTT
* *
37010759 TAATATTAT-CACGTATTTT
1 T-ATATTATGTACATATTTT
*
37010778 TTTATATATGTACATATT
1 TATAT-TATGTACATATT
37010796 GATGTAGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 13 0.45
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (19 bp):
TATATTATGTACATATTTT
Found at i:37010935 original size:16 final size:15
Alignment explanation
Indices: 37010911--37010958 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
37010901 TAATTATTAT
*
37010911 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
37010927 TATTTTAATATTTTA
1 TATTTTAATATTTTA
37010942 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
37010958 T
1 T
37010959 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:37010946 original size:7 final size:8
Alignment explanation
Indices: 37010911--37010962 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
37010901 TAATTATTAT
*
37010911 TATTCTAA
1 TATTTTAA
*
37010919 TATTTTGA
1 TATTTTAA
37010927 TATTTTAA
1 TATTTTAA
37010935 TATTTT-A
1 TATTTTAA
37010942 TATTTTATA
1 TATTTTA-A
*
37010951 TATTTTAT
1 TATTTTAA
37010959 TATT
1 TATT
37010963 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:37012803 original size:15 final size:12
Alignment explanation
Indices: 37012760--37012796 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
37012750 TTACTTAAAA
* *
37012760 AAAATTATACTC
1 AAAATAATACAC
37012772 AAAATAATACAC
1 AAAATAATACAC
37012784 AAAATAATACAC
1 AAAATAATACAC
37012796 A
1 A
37012797 CTAAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAATAATACAC
Found at i:37012898 original size:62 final size:62
Alignment explanation
Indices: 37012778--37012891 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 62
37012768 ACTCAAAATA
** * *
37012778 ATACACAAAATAATACACACTAAAATTATTAAATCTATACTACGAATAATATTAATAATTTT
1 ATACACAAAATAATACACACTAAAATTATTAAATCTATACTAAAAAAAATACTAATAATTTT
* *
37012840 ATACTCAAAATAATACACACTAAAATTATT-AAT-TTTACTAAAAAAAA-ACTAA
1 ATACACAAAATAATACACACTAAAATTATTAAATCTATACTAAAAAAAATACTAA
37012892 CTATAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 4 0.09
60 10 0.22
61 3 0.07
62 29 0.63
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (62 bp):
ATACACAAAATAATACACACTAAAATTATTAAATCTATACTAAAAAAAATACTAATAATTTT
Found at i:37013039 original size:3 final size:3
Alignment explanation
Indices: 37013031--37013068 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
37013021 TCTTCATACT
37013031 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
37013069 TAATAATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:37013162 original size:19 final size:21
Alignment explanation
Indices: 37013138--37013176 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
37013128 ACTAAAACAA
*
37013138 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
37013157 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
37013177 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:37013458 original size:28 final size:28
Alignment explanation
Indices: 37013422--37013496 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
37013412 TTTAAATTTT
37013422 TTTATATATTTTGGTAAATAAAAAAAAG
1 TTTATATATTTTGGTAAATAAAAAAAAG
37013450 TTTATATATTTTGGTAAATAAAAAAAAG
1 TTTATATATTTTGGTAAATAAAAAAAAG
37013478 TTGTA-ATATTTTGGTAAAT
1 TT-TATATATTTTGGTAAAT
37013497 TTTTATTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 44 0.96
29 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (28 bp):
TTTATATATTTTGGTAAATAAAAAAAAG
Found at i:37022321 original size:28 final size:27
Alignment explanation
Indices: 37022273--37022327 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
37022263 AATTTAAAAG
* * *
37022273 AATTAAAAAAATATAATTATGTTTAAA
1 AATTAAAAAAATAAAAATATGGTTAAA
*
37022300 AATTTAAAAAATAAAAAATATGGTTAAA
1 AATTAAAAAAAT-AAAAATATGGTTAAA
37022328 TTTTTAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (27 bp):
AATTAAAAAAATAAAAATATGGTTAAA
Found at i:37028125 original size:36 final size:33
Alignment explanation
Indices: 37028041--37028130 Score: 83
Period size: 36 Copynumber: 2.6 Consensus size: 33
37028031 TCCACTCATA
*
37028041 TATTT-TTAAAATTTTTATTTTAAAAAATATATT
1 TATTTATTAAAATTTATA-TTTAAAAAATATATT
** *
37028074 TATATTATTTTAATTTAATATTTAATAATATATTATT
1 TAT-TTATTAAAATTT-ATATTTAA-AAAATA-TATT
37028111 TATTTATTAAAATTTTATAT
1 TATTTATTAAAA-TTTATAT
37028131 ATAGGGATCT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
33 3 0.07
34 2 0.04
35 12 0.27
36 18 0.40
37 10 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (33 bp):
TATTTATTAAAATTTATATTTAAAAAATATATT
Found at i:37029822 original size:31 final size:31
Alignment explanation
Indices: 37029786--37029846 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
37029776 AATACCAAAT
* * *
37029786 TATTGTATAAGGACTAAAATTTGAATTTAAA
1 TATTGTAAAAGGACCAAAATTAGAATTTAAA
37029817 TATTGTAAAAGGACCAAAATTAGAATTTAA
1 TATTGTAAAAGGACCAAAATTAGAATTTAA
37029847 CCTATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.34
Consensus pattern (31 bp):
TATTGTAAAAGGACCAAAATTAGAATTTAAA
Found at i:37032533 original size:4 final size:4
Alignment explanation
Indices: 37032524--37032554 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
37032514 CCCATCTGTG
37032524 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
37032555 GGTGAAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:37037077 original size:161 final size:155
Alignment explanation
Indices: 37036813--37037120 Score: 463
Period size: 161 Copynumber: 1.9 Consensus size: 155
37036803 ATATACTATC
* * *
37036813 CTTTTTTTGCTTCTAGTTCTTGTACTCGTACCAGACTAAGGAAAAAATCACAACCCCAAATTGGA
1 CTTTTTTTGCTTCTAGTTCTTGTACTCATACCAGACTAAGGAAAAAATCACAAACCCAAATTAGA
*
37036878 TTTAAATATTTTGAAACTTGACAGTAAAAAAATGTTTATAATATACTTGTGATCCAGTTGTATTA
66 TTTAAATATTTTGAAACTTGACAATAAAAAAATGTTTAT-ATATACTTGTGATCCAGTTGTATTA
* *
37036943 GGTTGAATGCATGGTCTTTTGTTGTT
130 GGTTGAAGGCATGATCTTTTGTTGTT
* *
37036969 CTTTTTTTGGCTTCTAGTTCTTGTACTTATACCAGACTAAGACAATAAAAAATCACAAACCCAAA
1 CTTTTTTT-GCTTCTAGTTCTTGTACTCATACCAGACTAAG----GAAAAAATCACAAACCCAAA
* *
37037034 TTAGATTTAAATATTTTGAAACTTGACAATGAAAAAGTGTTTATATATACTTGTGATCCAGTTGT
61 TTAGATTTAAATATTTTGAAACTTGACAATAAAAAAATGTTTATATATACTTGTGATCCAGTTGT
*
37037099 GTTAGGTTGAAGGCATGATCTT
126 ATTAGGTTGAAGGCATGATCTT
37037121 CTATTGTGAC
Statistics
Matches: 136, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
156 8 0.06
157 30 0.22
160 40 0.29
161 58 0.43
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (155 bp):
CTTTTTTTGCTTCTAGTTCTTGTACTCATACCAGACTAAGGAAAAAATCACAAACCCAAATTAGA
TTTAAATATTTTGAAACTTGACAATAAAAAAATGTTTATATATACTTGTGATCCAGTTGTATTAG
GTTGAAGGCATGATCTTTTGTTGTT
Found at i:37039427 original size:18 final size:18
Alignment explanation
Indices: 37039401--37039440 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37039391 CATCTAAACC
*
37039401 TTCAACACCCTTACCACA
1 TTCAACACCCTCACCACA
* *
37039419 TTCACCACCCTCACCACC
1 TTCAACACCCTCACCACA
37039437 TTCA
1 TTCA
37039441 TTGCCAGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.23
Consensus pattern (18 bp):
TTCAACACCCTCACCACA
Found at i:37039503 original size:57 final size:57
Alignment explanation
Indices: 37039419--37039678 Score: 270
Period size: 57 Copynumber: 4.7 Consensus size: 57
37039409 CCTTACCACA
* * *
37039419 TTCACCACCCTCACCACCTTCATTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
1 TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
* * * * ** *
37039476 TTCAACACCCTCACCACATTTACTGCCAGCAACCTCAGCACACTCTCCATTTAGACC
1 TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
* *
37039533 TTCAACACCCTTACCACCTTTACTGCCAACAACCTCAACACCCT-CCCACCTAAACC
1 TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
* * * **
37039589 -T--------TCACCACCTTCACTGCCAGCAACCTCAGCACCCTTCCCATTTAAACC
1 TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
* **
37039637 TTCAACACCCTCACCACTTTTACTGCCAGCAATTTCAACACC
1 TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACC
37039679 TTCATTACCA
Statistics
Matches: 163, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
47 30 0.18
48 10 0.06
49 1 0.01
55 1 0.01
56 8 0.05
57 113 0.69
ACGTcount: A:0.28, C:0.46, G:0.05, T:0.22
Consensus pattern (57 bp):
TTCAACACCCTCACCACCTTTACTGCCAGCAACCTCAACACCCTCCCCACCTAAACC
Found at i:37039614 original size:47 final size:48
Alignment explanation
Indices: 37039541--37039650 Score: 143
Period size: 47 Copynumber: 2.3 Consensus size: 48
37039531 CCTTCAACAC
*
37039541 CCTT-ACCACCTTTACTGCCAACAACCTCAACACCC-TCCCACCTAAA
1 CCTTCACCACCTTCACTGCCAACAACCTCAACACCCTTCCCACCTAAA
* * **
37039587 CCTTCACCACCTTCACTGCCAGCAACCTCAGCACCCTTCCCATTTAAA
1 CCTTCACCACCTTCACTGCCAACAACCTCAACACCCTTCCCACCTAAA
* *
37039635 CCTTCAACACCCTCAC
1 CCTTCACCACCTTCAC
37039651 CACTTTTACT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 4 0.07
47 28 0.51
48 23 0.42
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (48 bp):
CCTTCACCACCTTCACTGCCAACAACCTCAACACCCTTCCCACCTAAA
Found at i:37039675 original size:104 final size:104
Alignment explanation
Indices: 37039486--37039678 Score: 289
Period size: 104 Copynumber: 1.9 Consensus size: 104
37039476 TTCAACACCC
* * *
37039486 TCACCACATTTACTGCCAGCAACCTCAGCACACTCTCCATTTAGACCTTCAACACCCTTACCACC
1 TCACCACATTCACTGCCAGCAACCTCAGCACACTCTCCATTTAAACCTTCAACACCCTCACCACC
37039551 TTTACTGCCAACAACCTCAACACCCTCCCACCTAAACCT
66 TTTACTGCCAACAACCTCAACACCCTCCCACCTAAACCT
* *
37039590 TCACCACCTTCACTGCCAGCAACCTCAGCACCCT-TCCCATTTAAACCTTCAACACCCTCACCAC
1 TCACCACATTCACTGCCAGCAACCTCAGCACACTCT-CCATTTAAACCTTCAACACCCTCACCAC
* * **
37039654 TTTTACTGCCAGCAATTTCAACACC
65 CTTTACTGCCAACAACCTCAACACC
37039679 TTCATTACCA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 1 0.01
104 78 0.99
ACGTcount: A:0.28, C:0.44, G:0.05, T:0.23
Consensus pattern (104 bp):
TCACCACATTCACTGCCAGCAACCTCAGCACACTCTCCATTTAAACCTTCAACACCCTCACCACC
TTTACTGCCAACAACCTCAACACCCTCCCACCTAAACCT
Found at i:37041950 original size:98 final size:97
Alignment explanation
Indices: 37041780--37041955 Score: 210
Period size: 98 Copynumber: 1.8 Consensus size: 97
37041770 CATCATTTTC
* * * *
37041780 AGGCAACCCGGGGTGATAGAATGTACATATTCTGGTAGTCATTGTTGTCGGGCAACCCGAGATGA
1 AGGCAACCCAGGGTGATAGAATGTACATATTCTAGTAGTCATTGTTGTCAGGCAACCCGAGATAA
* *
37041845 TAGAGTAAATAGATTGTGAAAGTCTTCATTGCT
66 CAAAGT-AATAGATTGTGAAAGTCTTCATTGCT
* * * * * * *
37041878 AGGCAACCCAGGGTGGTAGTATGTATATGTTTTAGTAGTCATTGTTG-CTAGGCAACCTGGGATA
1 AGGCAACCCAGGGTGATAGAATGTACATATTCTAGTAGTCATTGTTGTC-AGGCAACCCGAGATA
37041942 ACAAAGTAATAGAT
65 ACAAAGTAATAGAT
37041956 CCATGTATCT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
97 8 0.12
98 56 0.88
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (97 bp):
AGGCAACCCAGGGTGATAGAATGTACATATTCTAGTAGTCATTGTTGTCAGGCAACCCGAGATAA
CAAAGTAATAGATTGTGAAAGTCTTCATTGCT
Done.