Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 123 of 196
Found at i:37044549 original size:18 final size:18
Alignment explanation
Indices: 37044524--37044577 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
37044514 TAATAATTTA
37044524 TGTATATATG-AAAAATT
1 TGTATATATGTAAAAATT
*
37044541 TGTATTATATGTAAAAATG
1 TGTA-TATATGTAAAAATT
*
37044560 T-TAT-TATGTAAATATT
1 TGTATATATGTAAAAATT
37044576 TG
1 TG
37044578 ATAGAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 11 0.35
17 5 0.16
18 8 0.26
19 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (18 bp):
TGTATATATGTAAAAATT
Found at i:37046612 original size:44 final size:44
Alignment explanation
Indices: 37046564--37046683 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 44
37046554 TCGACTTCAA
*
37046564 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTCTCAG
* ** * *
37046608 TCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTCTCAG
*
37046652 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
37046684 CGGATGCGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTCTCAG
Found at i:37046797 original size:87 final size:87
Alignment explanation
Indices: 37046693--37046855 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
37046683 TCGGATGCGA
* * * *
37046693 TCTGCTCCACTACTGCTTAGGGAGGTAAGATCTATTGTTTTAATCCGCTCCACTGTAACTTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTCAGG
*
37046758 GAGATAGGATTGATTTCTTCTG
66 GACATAGGATTGATTTCTTCTG
37046780 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTCAGG
37046845 GACATAGGATT
66 GACATAGGATT
37046856 ATCGGCTTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (87 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTCAGG
GACATAGGATTGATTTCTTCTG
Found at i:37046831 original size:43 final size:43
Alignment explanation
Indices: 37046696--37046833 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 43
37046686 GATGCGATCT
* *
37046696 GCTCCACTACTGCTTAGGGAGGTAAGATCTATTGTTTTAATCC
1 GCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCC
* * * * * *
37046739 GCTCCACT-GTAACTTCAGGGAGATAGGAT-TGATTTCTTCT-GTCT
1 GCTCCACTACT-GCTT-AGGGAGATAAGATCT-ATTGCTT-TAATCC
37046783 GCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCC
1 GCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCC
*
37046826 ACTCCACT
1 GCTCCACT
37046834 GCAACTTCAG
Statistics
Matches: 73, Mismatches: 15, Indels: 14
0.72 0.15 0.14
Matches are distributed among these distances:
42 2 0.03
43 39 0.53
44 30 0.41
45 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (43 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTATTGCTTTAATCC
Found at i:37047071 original size:131 final size:131
Alignment explanation
Indices: 37046780--37047602 Score: 890
Period size: 131 Copynumber: 6.3 Consensus size: 131
37046770 ATTTCTTCTG
* ***
37046780 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGC--TTT--AATCC-ACTCCACTGCAACT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC---TGCAATTTCCAA-CCTATTCCACTGC-TGG
* * * * * * *
37046840 TCAGGGACATAGGA-TTATCGGCTTCAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTCGCCG
61 TCAGGGACATAGGACTTGT-GGCTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCGCCG
37046901 TCTTCGA
125 TCTTCGA
* *
37046908 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTACTAGTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* * *
37046973 GACATAGGACTTGTGGTTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCACCGTCTTCA
66 GACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCGCCGTCTTCG
37047038 A
131 A
*
37047039 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* * *
37047104 GACATAGGACTTGTGGCTCAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCG
66 GACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCGCCGTCTTCG
37047169 A
131 A
* * * * *
37047170 CCTGCTCCACTACTACTTAGGAAGATAAGATCTGCAATTTCCAACCTATCCCACTGCTGGTCAAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* ** * *
37047235 GACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGCTGAAGATAAAATTCGCCGTCTTCG
66 GACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCGCCGTCTTCG
37047300 A
131 A
* * * * *
37047301 TCTGCTCTATTATTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTGCTGGTCAAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* * * *
37047366 GACATAGGACTCGGTGGGC-TAAATCTGCTTCCC-ACTATCT-TGGAAATATAAGATTTGCCGTC
66 GACATAGGACT-TGT-GGCTTAAATCTGTTTCCCTACT-TCTGGGGAAA-ATAAGATTCGCCGTC
*
37047428 TTTGA
127 TTCGA
* * * * *
37047433 TCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTT-CAACCTGCTT-CGCTGCTGCTCA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TTCCAACCT-ATTCCACTGCTGGTCA
* * * * * *
37047496 GGGAGACA-AGG-CTCGATGGCCTAAATCTGCTTCCC-ACTATCT-TGGAAAGATAAGATTTGTC
64 -GG-GACATAGGACTTG-TGGCTTAAATCTGTTTCCCTACT-TCTGGGGAAA-ATAAGATTCGCC
*
37047557 GTCTTTGA
124 GTCTTCGA
*
37047565 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT
37047603 ATTCACTGAT
Statistics
Matches: 611, Mismatches: 65, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
125 3 0.00
127 3 0.00
128 65 0.11
129 15 0.02
131 342 0.56
132 168 0.27
133 11 0.02
134 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (131 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
GACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTTCTGGGGAAAATAAGATTCGCCGTCTTCG
A
Found at i:37049873 original size:30 final size:30
Alignment explanation
Indices: 37049837--37049896 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
37049827 CAATGTTTTT
37049837 ATAGATAAGATTTCTCACTTTCATCTTGTA
1 ATAGATAAGATTTCTCACTTTCATCTTGTA
37049867 ATAGATAAGATTTCTCACTTTCATCTTGTA
1 ATAGATAAGATTTCTCACTTTCATCTTGTA
37049897 TGCGAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (30 bp):
ATAGATAAGATTTCTCACTTTCATCTTGTA
Found at i:37055455 original size:29 final size:26
Alignment explanation
Indices: 37055420--37055473 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 26
37055410 AAAATCTCTT
*
37055420 CTGCTATTTCTGTTATTTATTTTCTTTTC
1 CTGCTATTT-TGTT-TTT-TTCTCTTTTC
37055449 CTGCTATTTTGTTTTTTTCTCTTTT
1 CTGCTATTTTGTTTTTTTCTCTTTT
37055474 TCTCTTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 8 0.33
27 3 0.12
28 4 0.17
29 9 0.38
ACGTcount: A:0.07, C:0.17, G:0.07, T:0.69
Consensus pattern (26 bp):
CTGCTATTTTGTTTTTTTCTCTTTTC
Found at i:37056796 original size:27 final size:26
Alignment explanation
Indices: 37056766--37056822 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
37056756 TTAAGACCTA
37056766 AAATTATAAACTATTTTAATATAATT-T
1 AAATTAT-AA-TATTTTAATATAATTAT
* **
37056793 AAATTCTAATATTTTTTTATAATTAT
1 AAATTATAATATTTTAATATAATTAT
37056819 AAAT
1 AAAT
37056823 GTTCTCGTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 13 0.50
26 7 0.27
27 6 0.23
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
AAATTATAATATTTTAATATAATTAT
Found at i:37059381 original size:18 final size:18
Alignment explanation
Indices: 37059360--37059490 Score: 103
Period size: 18 Copynumber: 7.4 Consensus size: 18
37059350 CTTCTCACCA
*
37059360 TCTTTCTTGGTTTCATCT
1 TCTTTCTTGGCTTCATCT
** *
37059378 TCTTTCTTACCTTCTTCT
1 TCTTTCTTGGCTTCATCT
37059396 TCCTTT-TTGGCTTCATCT
1 T-CTTTCTTGGCTTCATCT
37059414 T-TCTT-TT-G-TTCATCT
1 TCT-TTCTTGGCTTCATCT
* * *
37059429 TCCTTCTTGGGTTCACCT
1 TCTTTCTTGGCTTCATCT
*
37059447 TCTTTCTTTTG-TTCATCT
1 TCTTTC-TTGGCTTCATCT
* *
37059465 TCTTTTTTGGCTTCACCT
1 TCTTTCTTGGCTTCATCT
37059483 TCTTTCTT
1 TCTTTCTT
37059491 TGGTTCCTCT
Statistics
Matches: 89, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
15 10 0.11
16 4 0.04
17 8 0.09
18 60 0.67
19 7 0.08
ACGTcount: A:0.05, C:0.27, G:0.08, T:0.60
Consensus pattern (18 bp):
TCTTTCTTGGCTTCATCT
Found at i:37059425 original size:15 final size:15
Alignment explanation
Indices: 37059407--37059470 Score: 58
Period size: 15 Copynumber: 3.9 Consensus size: 15
37059397 CCTTTTTGGC
37059407 TTCATCTTTCTTTTG
1 TTCATCTTTCTTTTG
*
37059422 TTCATCTTCCTTCTTGGG
1 TTCATCTTTCTT-TT--G
37059440 TTCACCTTCTTTCTTTTG
1 TTCA---TCTTTCTTTTG
37059458 TTCATC-TTCTTTT
1 TTCATCTTTCTTTT
37059471 TTGGCTTCAC
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
14 7 0.17
15 13 0.32
16 2 0.05
18 10 0.24
20 2 0.05
21 7 0.17
ACGTcount: A:0.06, C:0.25, G:0.08, T:0.61
Consensus pattern (15 bp):
TTCATCTTTCTTTTG
Found at i:37059453 original size:69 final size:70
Alignment explanation
Indices: 37059363--37059507 Score: 175
Period size: 69 Copynumber: 2.1 Consensus size: 70
37059353 CTCACCATCT
* * * *
37059363 TTCTTGGTTTCATCTTCTTTCTTACCTTCTTCTTCCTTTTTGGCTTCA-TCTTTCTTTTGTTCAT
1 TTCTTGGGTTCACCTTCTTTCTTACCTTCATCTTCCTTTTTGGCTTCACTCTTTCTTTGGTTCAT
37059427 CTTCC
66 CTTCC
*** *
37059432 TTCTTGGGTTCACCTTCTTTCTTTTGTTCATCTTCTTTTTTGGCTTCACCTTCTTTCTTTGGTTC
1 TTCTTGGGTTCACCTTCTTTCTTACCTTCATCTTCCTTTTTGGCTTCA-C-TCTTTCTTTGGTTC
* *
37059497 CTCTTTC
64 ATCTTCC
37059504 TTCT
1 TTCT
37059508 CTGGTTCTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
69 41 0.65
72 22 0.35
ACGTcount: A:0.05, C:0.27, G:0.09, T:0.59
Consensus pattern (70 bp):
TTCTTGGGTTCACCTTCTTTCTTACCTTCATCTTCCTTTTTGGCTTCACTCTTTCTTTGGTTCAT
CTTCC
Found at i:37059491 original size:36 final size:36
Alignment explanation
Indices: 37059363--37059507 Score: 152
Period size: 36 Copynumber: 4.1 Consensus size: 36
37059353 CTCACCATCT
* * *** *
37059363 TTCTTGGTTTCATCTTCTTTCTTACCTTCTTCTTCC
1 TTCTTGGCTTCACCTTCTTTCTTTTGTTCATCTTCC
*
37059399 TTTTTGGCTTCA---TCTTTCTTTTGTTCATCTTCC
1 TTCTTGGCTTCACCTTCTTTCTTTTGTTCATCTTCC
* *
37059432 TTCTTGGGTTCACCTTCTTTCTTTTGTTCATCTTCT
1 TTCTTGGCTTCACCTTCTTTCTTTTGTTCATCTTCC
* * * *
37059468 TTTTTGGCTTCACCTTCTTTCTTTGGTTCCTCTTTC
1 TTCTTGGCTTCACCTTCTTTCTTTTGTTCATCTTCC
37059504 TTCT
1 TTCT
37059508 CTGGTTCTTT
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
33 27 0.30
36 63 0.70
ACGTcount: A:0.05, C:0.27, G:0.09, T:0.59
Consensus pattern (36 bp):
TTCTTGGCTTCACCTTCTTTCTTTTGTTCATCTTCC
Found at i:37066469 original size:13 final size:13
Alignment explanation
Indices: 37066451--37066479 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37066441 GCGAAACACC
37066451 TATAACAATGCAT
1 TATAACAATGCAT
37066464 TATAACAATGCAT
1 TATAACAATGCAT
37066477 TAT
1 TAT
37066480 GTGTGAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (13 bp):
TATAACAATGCAT
Found at i:37067844 original size:16 final size:16
Alignment explanation
Indices: 37067807--37067848 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37067797 TTAATCACAT
*
37067807 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
37067823 TT-AAATATATTATAA
1 TTAAAATATATTATAA
37067838 TTAAAATATAT
1 TTAAAATATAT
37067849 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:37067855 original size:14 final size:15
Alignment explanation
Indices: 37067816--37067857 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37067806 TTTAAACATA
*
37067816 ATTATTATTAAATAT
1 ATTATAATTAAATAT
37067831 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
37067845 A-TATAATTTAATA
1 ATTATAATTAAATA
37067858 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:37067975 original size:14 final size:15
Alignment explanation
Indices: 37067926--37067977 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
37067916 GTAAAATATA
37067926 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
37067941 TATTAAATATATTAT
1 AATTAAATATATTAT
37067956 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
37067969 AATTTAATA
1 AATTAAATA
37067978 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:37068095 original size:14 final size:15
Alignment explanation
Indices: 37068046--37068097 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
37068036 GTAAAATATA
37068046 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
37068061 TATTAAATATATTAT
1 AATTAAATATATTAT
37068076 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
37068089 AATTTAATA
1 AATTAAATA
37068098 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:37068215 original size:14 final size:15
Alignment explanation
Indices: 37068166--37068217 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
37068156 GTAAAATATA
37068166 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
37068181 TATTAAATATATTAT
1 AATTAAATATATTAT
37068196 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
37068209 AATTTAATA
1 AATTAAATA
37068218 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:37068353 original size:120 final size:120
Alignment explanation
Indices: 37067810--37068342 Score: 996
Period size: 120 Copynumber: 4.4 Consensus size: 120
37067800 ATCACATTTA
37067810 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
37067875 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37067930 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
37067995 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37068050 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
37068115 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
37068170 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
37068235 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* * *
37068290 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
37068343 TAAAATAATT
Statistics
Matches: 406, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
120 404 1.00
121 2 0.00
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:37068441 original size:47 final size:46
Alignment explanation
Indices: 37068390--37068533 Score: 106
Period size: 47 Copynumber: 3.1 Consensus size: 46
37068380 TTGTATAATT
37068390 TAAAATAATAATTATTATATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATAATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
37068437 TAAAAT--T-CTTGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAATAATT-ATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
*
37068481 TAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAA-TAATTATT-AATATAATTTAATAATAATATATAATTTCA
37068528 TAAAAT
1 TAAAAT
37068534 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 28
0.65 0.10 0.25
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 12 0.17
45 12 0.17
46 10 0.14
47 17 0.24
48 9 0.12
49 2 0.03
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATAATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:37068452 original size:101 final size:93
Alignment explanation
Indices: 37068283--37068565 Score: 299
Period size: 91 Copynumber: 3.0 Consensus size: 93
37068273 ACTATAAAAG
* * * *
37068283 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT--
* * *
37068346 AATAATTATAACTAATAAATTATATTTTATGAATTTGT
63 --T-A--ATAA-T-ATAAATTTTATTATATGAATTTAT
* *
37068384 ATAATTTAAAATAA-TAATTATTATATATAATTTAATAATAATATATAATTTCATAAAATTCTTG
1 ATAATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTA
*
37068448 AT-A-ATAAATTTTCTTATATGAATTTAT
65 ATAATATAAATTTTATTATATGAATTTAT
* *
37068475 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
* *
37068540 TAATA-AAATGTTCTTATATGAATTTA
66 TAATATAAATTTTATTATATGAATTTA
37068566 CTAAAATCAA
Statistics
Matches: 161, Mismatches: 15, Indels: 21
0.82 0.08 0.11
Matches are distributed among these distances:
91 78 0.48
92 24 0.15
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 6 0.04
101 47 0.29
102 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
TAATATAAATTTTATTATATGAATTTAT
Found at i:37068525 original size:44 final size:43
Alignment explanation
Indices: 37068339--37068525 Score: 112
Period size: 44 Copynumber: 4.1 Consensus size: 43
37068329 GATTTAATAA
* * * *
37068339 AATTTAAAATAATTATAACTAATAAAT-TATATTTTATGAATTTGTAT
1 AATTTAAAATAA-T-TAA-TATTAAATATA-ATTTAAT-AATATATAT
*
37068386 AATTTAAAATAA-TAATTATTATATATAATTTAATAATAATATAT
1 AATTTAAAATAATTAA-TATTAAATATAATTTAATAAT-ATATAT
** * * * * *
37068430 AATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTATAC
1 AA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATATAT
37068477 AATTTAAAATAATTAATATTAAATATAATTTAATAATGATATAT
1 AATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATATAT
37068521 AATTT
1 AATTT
37068526 CATAAAATTC
Statistics
Matches: 107, Mismatches: 21, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
43 6 0.06
44 48 0.45
45 9 0.08
46 7 0.07
47 32 0.30
48 5 0.05
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (43 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATATATAT
Found at i:37068540 original size:47 final size:47
Alignment explanation
Indices: 37068408--37068546 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
37068398 TAATTATTAT
* *
37068408 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
37068455 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
37068499 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
37068546 A
1 A
37068547 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:37086444 original size:8 final size:9
Alignment explanation
Indices: 37086408--37086441 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
37086398 TTAATGGGGA
37086408 AATTAATTT
1 AATTAATTT
*
37086417 AGTTAATTT
1 AATTAATTT
37086426 AATTAA-TT
1 AATTAATTT
37086434 AATTAATT
1 AATTAATT
37086442 AATATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
AATTAATTT
Found at i:37089995 original size:18 final size:18
Alignment explanation
Indices: 37089972--37090009 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37089962 TGCCAGGTGC
* *
37089972 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
37089990 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
37090008 GT
1 GT
37090010 TTCTTTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:37092155 original size:125 final size:125
Alignment explanation
Indices: 37091851--37092262 Score: 628
Period size: 125 Copynumber: 3.3 Consensus size: 125
37091841 CTCAAACAAG
* *
37091851 CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCAATTTCAAAAATTCATCTGATAAAGCATCCTGC
1 CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
*
37091916 TTGAAGTGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
37091975 CTATTGTAGTAAATGCGCATCCACGTGGGAACGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
1 CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
* *
37092040 TTGAAGCATTTTTTATAATATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * * *
37092100 CTACTGTAGCAAAAGCACGTCTACGTGGGAGCGATTTCAGAAATTCTTCTAATAAAGCATCCTAC
1 CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
* * *
37092165 TTGAAGCGTTTTTTATACTATTTACTCAGAAATGTCAACTCGAAATTATTTTCTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
** *
37092225 CTATTGTATAAAAAACGCGTCCACGTGGGAGCGATTTC
1 CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
37092263 CTTAATAAAT
Statistics
Matches: 257, Mismatches: 30, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
124 104 0.40
125 153 0.60
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (125 bp):
CTATTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:37092485 original size:21 final size:22
Alignment explanation
Indices: 37092447--37092487 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
37092437 TTAAAAATCT
*
37092447 TAAAAACCCTAAACCCTAACCC
1 TAAAAACCCTAAAACCTAACCC
37092469 TAAAAACCC-AAAACCTAAC
1 TAAAAACCCTAAAACCTAAC
37092488 GTGGGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.37, G:0.00, T:0.12
Consensus pattern (22 bp):
TAAAAACCCTAAAACCTAACCC
Found at i:37095453 original size:31 final size:31
Alignment explanation
Indices: 37095417--37095485 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
37095407 TTGTCGCCGA
* * *
37095417 GCAATCCGGGGCGGTTGGTCATCATTGTTAG
1 GCAATCCGAGGCGGTTGATCATCATCGTTAG
* * **
37095448 GCAATCTGAGGTGGTTGATCATTGTCGTTAG
1 GCAATCCGAGGCGGTTGATCATCATCGTTAG
37095479 GCAATCC
1 GCAATCC
37095486 AAGATGACAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (31 bp):
GCAATCCGAGGCGGTTGATCATCATCGTTAG
Found at i:37097367 original size:17 final size:16
Alignment explanation
Indices: 37097345--37097377 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
37097335 TATCAACCAA
37097345 TTCATATACAATATCAT
1 TTCATATACAA-ATCAT
37097362 TTCATATACAAATCAT
1 TTCATATACAAATCAT
37097378 GTTAATCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCATATACAAATCAT
Found at i:37099537 original size:50 final size:50
Alignment explanation
Indices: 37099478--37099670 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
37099468 ATTTGGGTAA
* ** *
37099478 AGAGGTCCCATGTAAGACCATGTCTGGGGCATGAAATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
*
37099528 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
** *
37099578 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* ** * *
37099628 TGAACATCCCATGTAAGACCATGTCTGAGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37099671 TGTTATTATC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 92 0.74
51 33 0.26
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:37108447 original size:15 final size:15
Alignment explanation
Indices: 37108409--37108448 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
37108399 TGGGTTTTGA
37108409 ATTTCGATTTTTAAAG
1 ATTT-GATTTTTAAAG
*
37108425 ATTT-ATTTTTAGAG
1 ATTTGATTTTTAAAG
37108439 ATTTGATTTT
1 ATTTGATTTT
37108449 CAGGGTTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 13 0.59
15 5 0.23
16 4 0.18
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.57
Consensus pattern (15 bp):
ATTTGATTTTTAAAG
Found at i:37117601 original size:23 final size:23
Alignment explanation
Indices: 37117575--37117620 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
37117565 AGTTAAATAT
37117575 TATTTTTTATTATTTTACTTAGA
1 TATTTTTTATTATTTTACTTAGA
*
37117598 TATTTTTTATTATTTTATTTAGA
1 TATTTTTTATTATTTTACTTAGA
37117621 AAATGGTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (23 bp):
TATTTTTTATTATTTTACTTAGA
Found at i:37128414 original size:33 final size:33
Alignment explanation
Indices: 37128353--37128415 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
37128343 ATGTATTTAC
*
37128353 TTTTTATTAATAATTATAGATTATTATATTAGT
1 TTTTTATTAAAAATTATAGATTATTATATTAGT
37128386 TTTTTA-TAAAAATTATTA-ATTATATATATT
1 TTTTTATTAAAAATTA-TAGATTAT-TATATT
37128416 TGAAATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (33 bp):
TTTTTATTAAAAATTATAGATTATTATATTAGT
Found at i:37128621 original size:18 final size:17
Alignment explanation
Indices: 37128595--37128636 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
37128585 ACTAAGTAAC
*
37128595 TATAGTTTAGTTTAGTTT
1 TATATTTTAGTTTA-TTT
*
37128613 TATATTTTATTTTATTT
1 TATATTTTAGTTTATTT
37128630 TAT-TTTT
1 TATATTTT
37128637 GGCATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 6 0.27
18 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (17 bp):
TATATTTTAGTTTATTT
Found at i:37135936 original size:23 final size:23
Alignment explanation
Indices: 37135910--37135956 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
37135900 ATGATATACG
37135910 GATATATGGTAGAGATGTTACAT
1 GATATATGGTAGAGATGTTACAT
37135933 GATATATGGTAGAGATGTTACAT
1 GATATATGGTAGAGATGTTACAT
37135956 G
1 G
37135957 TACATGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (23 bp):
GATATATGGTAGAGATGTTACAT
Found at i:37137908 original size:48 final size:48
Alignment explanation
Indices: 37137833--37137985 Score: 191
Period size: 48 Copynumber: 3.2 Consensus size: 48
37137823 GCGTACCGAT
* *
37137833 AATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCACCAAT
1 AATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAAGCCACCAAG
* * * *
37137881 AA-CTTGTTAAGATACAAGGGTGGCACGGACTATGTGCAAGCCACCGAG
1 AATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAAGCCACCAAG
* * * *
37137929 AATCTGTTATTACACAAAGGTGGTACGGACAGTGTGCAAGCCACCAAG
1 AATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAAGCCACCAAG
37137977 AAATCTGTT
1 -AATCTGTT
37137986 TTTATCCCTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 78 0.89
49 9 0.10
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (48 bp):
AATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAAGCCACCAAG
Found at i:37150893 original size:10 final size:10
Alignment explanation
Indices: 37150878--37150903 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
37150868 AGCAAAGTAA
37150878 AAAATAAAAG
1 AAAATAAAAG
37150888 AAAATAAAAG
1 AAAATAAAAG
37150898 AAAATA
1 AAAATA
37150904 GAGAAGAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATAAAAG
Found at i:37151673 original size:44 final size:44
Alignment explanation
Indices: 37151616--37152121 Score: 320
Period size: 44 Copynumber: 11.5 Consensus size: 44
37151606 CCAATATAAA
* *
37151616 AAGACAGGATCTGCTATTTTCGATCTACTTCAAGCCAATACATG
1 AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCAATACAGG
* * * ***
37151660 AAGATAATATCTGCT-TTCTTCGATCTACTTCGCCA-CCAATGTGGG
1 AAGACAAGATCTGCTATT-TTCGATCTACTT--CAAGCCAATACAGG
* * * *
37151705 AATACAAGATCTGC-ATCTTCGATCCACTTCCTA-CCAATACAGG
1 AAGACAAGATCTGCTATTTTCGATCTACTT-CAAGCCAATACAGG
* * * ** *
37151748 AAGACAGGATATGTTATCATCGATCTACTTCACGCCAATACAGG
1 AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCAATACAGG
* * * *
37151792 AAGACAAGCTCTGCT-TTCTTCGATCTACTTCACGTCAATACATG
1 AAGACAAGATCTGCTATT-TTCGATCTACTTCAAGCCAATACAGG
**
37151836 AAGACAAGATCTGCT-TTCTTCGATCTACTTC--GCCACCAGTATGGG
1 AAGACAAGATCTGCTATT-TTCGATCTACTTCAAGCCA--A-TACAGG
* * * *
37151881 AAGACAAGATCTGC-ATCTTCGATCCACTTCGCTA-CCAATATAGG
1 AAGACAAGATCTGCTATTTTCGATCTACTT--CAAGCCAATACAGG
* * * * * *
37151925 AAGATAGGATCTGTTATCTTCGATCTACTTCAAGCAAATACATG
1 AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCAATACAGG
* * * **
37151969 AAGACAAGATTTGCTTTTTTCGATATACTTC--GCCACCAGTATGGG
1 AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCA--A-TACAGG
* * * *
37152014 AAGACAAGATCTGC-ATCTTCGATCCACTTCGCTA-CCAATATAGG
1 AAGACAAGATCTGCTATTTTCGATCTACTT--CAAGCCAATACAGG
* * * * * * *
37152058 AAGACAGGATTTGTTATCTTCGATCTACTTCACGCCAATATATG
1 AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCAATACAGG
37152102 AAGACAAGATCTGCTATTTT
1 AAGACAAGATCTGCTATTTT
37152122 TTAGCCTGCT
Statistics
Matches: 358, Mismatches: 78, Indels: 52
0.73 0.16 0.11
Matches are distributed among these distances:
42 6 0.02
43 26 0.07
44 234 0.65
45 82 0.23
46 4 0.01
47 6 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
AAGACAAGATCTGCTATTTTCGATCTACTTCAAGCCAATACAGG
Found at i:37151751 original size:88 final size:88
Alignment explanation
Indices: 37151616--37152114 Score: 381
Period size: 88 Copynumber: 5.6 Consensus size: 88
37151606 CCAATATAAA
* * * * * * *
37151616 AAGACAGGATCTGCTATTTTCGATCTACTTCAAGCCAATACATGAAGATAATATCTGCTT-TCTT
1 AAGACAAGATCTGCTATCTTCGATCCACTTCTA-CCAATACAGGAAGACAAGATCTG-TTATCTT
*
37151680 CGATCTACTTCGCCACCAATGTGGG
64 CGATCTACTTCGCCACCAATATGGG
* * * *
37151705 AATACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATACAGGAAGACAGGATATGTTATCATC
1 AAGACAAGATCTGCTATCTTCGATCCACTT-CTACCAATACAGGAAGACAAGATCTGTTATCTTC
* * **
37151769 GATCTACTTC-ACGCCAATACAGG
65 GATCTACTTCGCCACCAATATGGG
* * * *
37151792 AAGACAAGCTCTGCTTTCTTCGATCTACTTC-ACGTCAATACATGAAGACAAGATCTGCTT-TCT
1 AAGACAAGATCTGCTATCTTCGATCCACTTCTAC--CAATACAGGAAGACAAGATCTG-TTATCT
*
37151855 TCGATCTACTTCGCCACCAGTATGGG
63 TCGATCTACTTCGCCACCAATATGGG
* * *
37151881 AAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGATAGGATCTGTTATCTT
1 AAGACAAGATCTGCTATCTTCGATCCACTT--CTACCAATACAGGAAGACAAGATCTGTTATCTT
***
37151945 CGATCTACTTCAAG-CA--AATACATG
64 CGATCTACTTC--GCCACCAATATGGG
* * * ** * * ** *
37151969 AAGACAAGATTTGCTTTTTTCGATATACTTCGCCACCAGTATGGGAAGACAAGATCTG-CATCTT
1 AAGACAAGATCTGCTATCTTCGATCCACTT--CTACCAATACAGGAAGACAAGATCTGTTATCTT
* * *
37152033 CGATCCACTTCGCTACCAATATAGG
64 CGATCTACTTCGCCACCAATATGGG
* * * * * *
37152058 AAGACAGGATTTGTTATCTTCGATCTACTTC-ACGCCAATATATGAAGACAAGATCTG
1 AAGACAAGATCTGCTATCTTCGATCCACTTCTA--CCAATACAGGAAGACAAGATCTG
37152115 CTATTTTTTA
Statistics
Matches: 328, Mismatches: 63, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
86 4 0.01
87 25 0.08
88 158 0.48
89 135 0.41
90 3 0.01
91 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (88 bp):
AAGACAAGATCTGCTATCTTCGATCCACTTCTACCAATACAGGAAGACAAGATCTGTTATCTTCG
ATCTACTTCGCCACCAATATGGG
Found at i:37151965 original size:133 final size:132
Alignment explanation
Indices: 37151708--37152116 Score: 538
Period size: 133 Copynumber: 3.1 Consensus size: 132
37151698 ATGTGGGAAT
* * * * ** * * * *
37151708 ACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATACAGGAAGACAGGATATGTTATCATCGA
1 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-CATCTTCGA
* * * * * *
37151771 TCTACTTCAC-GCCAATACAGGAAGACAAGCTCTGCTT-TCTTCGATCTACTTCACGTCAATACA
65 TCCACTTCGCTACCAATATAGGAAGACAGGATCTG-TTATCTTCGATCTACTTCACG-CAATACA
37151834 TGAAG
128 TGAAG
37151839 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
1 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
* *
37151904 CCACTTCGCTACCAATATAGGAAGATAGGATCTGTTATCTTCGATCTACTTCAAGCAAATACATG
66 CCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGC-AATACATG
37151969 AAG
130 AAG
* * *
37151972 ACAAGATTTGCTTTTTTCGATATACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
1 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
* *
37152037 CCACTTCGCTACCAATATAGGAAGACAGGATTTGTTATCTTCGATCTACTTCACGCCAATATATG
66 CCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACG-CAATACATG
37152102 AAG
130 AAG
37152105 ACAAGATCTGCT
1 ACAAGATCTGCT
37152117 ATTTTTTAGC
Statistics
Matches: 246, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
131 11 0.04
132 32 0.13
133 202 0.82
134 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (132 bp):
ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
CCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCAATACATGA
AG
Found at i:37152035 original size:177 final size:176
Alignment explanation
Indices: 37151616--37152114 Score: 574
Period size: 177 Copynumber: 2.8 Consensus size: 176
37151606 CCAATATAAA
* * * * * *
37151616 AAGACAGGATCTGCTATT-TTCGATCTACTTCA-AGCCAATACATGAAGATAATATCTGCTTTCT
1 AAGACAAGATCTGCT-TTCTTCGATATACTTCACA-CCAATACAGGAAGACAAGATCTGCTATCT
* *
37151679 TCGATCTACTTCGCCACCAATGTGGGAATACAAGATCTGCATCTTCGATCCACTTCCTACCAATA
64 TCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATA
* * * *
37151744 CAGGAAGACAGGATATGTTATCATCGATCTACTTCACGCCAATACAGG
129 TAGGAAGACAGGATCTGTTATCATCGATCTACTTCAAGCAAATACAGG
* * ** * *
37151792 AAGACAAGCTCTGCTTTCTTCGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTTTCTTC
1 AAGACAAGATCTGCTTTCTTCGATATACTTCACACCAATACAGGAAGACAAGATCTGCTATCTTC
*
37151857 GATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATAT
66 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATAT
* * *
37151922 AGGAAGATAGGATCTGTTATCTTCGATCTACTTCAAGCAAATACATG
130 AGGAAGACAGGATCTGTTATCATCGATCTACTTCAAGCAAATACAGG
* * * * **
37151969 AAGACAAGATTTGCTTTTTTCGATATACTTCGCCACCAGTATGGGAAGACAAGATCTGC-ATCTT
1 AAGACAAGATCTGCTTTCTTCGATATACTTC-ACACCAATACAGGAAGACAAGATCTGCTATCTT
* * * * * * * *
37152033 CGATCCACTTCGCTACCAATATAGGAAGACAGGATTTGTTATCTTCGATCTACTTCAC-GCCAAT
65 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTG-CATCTTCGATCCACTTC-CTACCAAT
* *
37152097 ATATGAAGACAAGATCTG
128 ATAGGAAGACAGGATCTG
37152115 CTATTTTTTA
Statistics
Matches: 277, Mismatches: 41, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
175 2 0.01
176 106 0.38
177 133 0.48
178 36 0.13
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (176 bp):
AAGACAAGATCTGCTTTCTTCGATATACTTCACACCAATACAGGAAGACAAGATCTGCTATCTTC
GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATA
GGAAGACAGGATCTGTTATCATCGATCTACTTCAAGCAAATACAGG
Found at i:37152965 original size:24 final size:26
Alignment explanation
Indices: 37152938--37152985 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
37152928 AGTGTCTTGA
37152938 AAAGAA-AAAGTATT-CAAGAACAGC
1 AAAGAATAAAGTATTACAAGAACAGC
37152962 AAAGAATAAAGTATTACAAGAACA
1 AAAGAATAAAGTATTACAAGAACA
37152986 AACAAATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.27
25 8 0.36
26 8 0.36
ACGTcount: A:0.60, C:0.10, G:0.15, T:0.15
Consensus pattern (26 bp):
AAAGAATAAAGTATTACAAGAACAGC
Found at i:37164340 original size:16 final size:16
Alignment explanation
Indices: 37164315--37164345 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37164305 TCGTTAAAAT
37164315 ATGTAAATATATACAC
1 ATGTAAATATATACAC
*
37164331 ATGTACATATATACA
1 ATGTAAATATATACA
37164346 AATATATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.32
Consensus pattern (16 bp):
ATGTAAATATATACAC
Found at i:37167575 original size:48 final size:48
Alignment explanation
Indices: 37167486--37167579 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
37167476 TTTCTTGGCT
* * * *
37167486 TAAAAATGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
37167534 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
37167580 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:37170090 original size:48 final size:48
Alignment explanation
Indices: 37170001--37170094 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
37169991 TTTCTTGGCT
* * * *
37170001 TAAAAATGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
37170049 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
37170095 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:37172827 original size:9 final size:9
Alignment explanation
Indices: 37172813--37172843 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37172803 TTTGGTTAAA
37172813 AATTAACCG
1 AATTAACCG
37172822 AATTAACCG
1 AATTAACCG
*
37172831 AATTACCCG
1 AATTAACCG
37172840 AATT
1 AATT
37172844 GAATCACTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:37172873 original size:17 final size:17
Alignment explanation
Indices: 37172851--37172913 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
37172841 ATTGAATCAC
37172851 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
37172868 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
37172888 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
37172905 TACATAATT
1 TACATAATT
37172914 CTTGAAATTA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
17 22 0.63
20 13 0.37
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:37172889 original size:37 final size:37
Alignment explanation
Indices: 37172842--37172916 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
37172832 ATTACCCGAA
37172842 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
37172879 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
37172916 T
1 T
37172917 GAAATTAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:37172930 original size:37 final size:37
Alignment explanation
Indices: 37172842--37172933 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
37172832 ATTACCCGAA
*
37172842 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
* *
37172879 TTGAATCACTACATAATTAAAAACATTACATAATTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
37172915 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
37172934 GAAATGTAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.06
37 45 0.88
38 3 0.06
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:37173089 original size:38 final size:39
Alignment explanation
Indices: 37173045--37173118 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 39
37173035 GACTTAGAGT
* *
37173045 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTCGGTTGGGTAATTGGG
37173083 TAGACTTTAGTTTTAGTTTTATTCGGTTGGGTAATT
1 TAGACTTTAGTTTTAGTTTTATTCGGTTGGGTAATT
37173119 CGGTTGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
38 26 0.79
39 7 0.21
ACGTcount: A:0.19, C:0.04, G:0.24, T:0.53
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTCGGTTGGGTAATTGGG
Found at i:37173121 original size:13 final size:13
Alignment explanation
Indices: 37173103--37173157 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
37173093 TTTTAGTTTT
37173103 ATTCGGTTGGGTA
1 ATTCGGTTGGGTA
37173116 ATTCGGTTGGGTTGGTA
1 ATTCGGTT--G--GGTA
*
37173133 ATTGGGTTGGGTA
1 ATTCGGTTGGGTA
*
37173146 ATTAGGTTGGGT
1 ATTCGGTTGGGT
37173158 TAGATAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
13 23 0.64
15 2 0.06
17 11 0.31
ACGTcount: A:0.15, C:0.04, G:0.42, T:0.40
Consensus pattern (13 bp):
ATTCGGTTGGGTA
Found at i:37173134 original size:17 final size:18
Alignment explanation
Indices: 37173107--37173144 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37173097 AGTTTTATTC
37173107 GGTTGGGTAATTCGGTTG
1 GGTTGGGTAATTCGGTTG
*
37173125 GGTT-GGTAATTGGGTTG
1 GGTTGGGTAATTCGGTTG
37173142 GGT
1 GGT
37173145 AATTAGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.11, C:0.03, G:0.47, T:0.39
Consensus pattern (18 bp):
GGTTGGGTAATTCGGTTG
Found at i:37179213 original size:20 final size:20
Alignment explanation
Indices: 37179188--37179225 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37179178 TCTCAAACTT
*
37179188 TTATTCCTCAAAACTTTTTA
1 TTATTCCCCAAAACTTTTTA
37179208 TTATTCCCCAAAACTTTT
1 TTATTCCCCAAAACTTTT
37179226 ACTTCTCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATTCCCCAAAACTTTTTA
Found at i:37180667 original size:26 final size:26
Alignment explanation
Indices: 37180642--37180701 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
37180632 AGATAATAAT
*
37180642 TAAAAATAAT-TTAATTATATTTTAA
1 TAAAAATAATATTAAATATATTTTAA
* * **
37180667 TATAATTCTTATTAAATATATTTTAA
1 TAAAAATAATATTAAATATATTTTAA
37180693 TAAAAATAA
1 TAAAAATAA
37180702 AAATATATAA
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
TAAAAATAATATTAAATATATTTTAA
Found at i:37185876 original size:13 final size:13
Alignment explanation
Indices: 37185858--37185888 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
37185848 ATTAATTGAA
37185858 TTATTTTTACAAT
1 TTATTTTTACAAT
37185871 TTATTTTTACAAT
1 TTATTTTTACAAT
37185884 TTATT
1 TTATT
37185889 GAATATCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (13 bp):
TTATTTTTACAAT
Found at i:37190574 original size:21 final size:20
Alignment explanation
Indices: 37190548--37190591 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37190538 ATAATAGAAT
*
37190548 AAATAATTCATGAAGTTAAAA
1 AAATAACTC-TGAAGTTAAAA
* *
37190569 AAATAACTCTTAATTTAAAA
1 AAATAACTCTGAAGTTAAAA
37190589 AAA
1 AAA
37190592 ATAAATGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.30
Consensus pattern (20 bp):
AAATAACTCTGAAGTTAAAA
Found at i:37191457 original size:22 final size:22
Alignment explanation
Indices: 37191432--37191479 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
37191422 GAAAGTATAG
*
37191432 TGAACCATGAAATGCTTATGAT
1 TGAACCATGAAATGCTTACGAT
*
37191454 TGAACCATGAAATTCTTACGAT
1 TGAACCATGAAATGCTTACGAT
37191476 TGAA
1 TGAA
37191480 TTGAATGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (22 bp):
TGAACCATGAAATGCTTACGAT
Found at i:37192814 original size:28 final size:27
Alignment explanation
Indices: 37192750--37192814 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 27
37192740 AATAATTAAA
*
37192750 GAAATAAAATAATAAAAATGAAATATT
1 GAAATAAAATAATAAAAATGAAATATG
* *
37192777 GAAA-AGAAATAAATAAAGGATTAAAT-TG
1 GAAATA-AAAT-AATAAA-AATGAAATATG
37192805 GAAATAAAAT
1 GAAATAAAAT
37192815 GAAACTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
26 1 0.03
27 8 0.26
28 15 0.48
29 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (27 bp):
GAAATAAAATAATAAAAATGAAATATG
Found at i:37194760 original size:45 final size:45
Alignment explanation
Indices: 37194505--37195299 Score: 705
Period size: 44 Copynumber: 17.8 Consensus size: 45
37194495 GTGCTTGCTG
* * * * * *
37194505 CTTCAATCTACTCTACTGCAACTTTAGGGAGATTAGACTTGC-AG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * ** *
37194549 CTTTAATCCGCTCTACTGCAACTTCAAAGAGATAAGACTTG-TAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * *
37194593 CTTCAATCTACTCCATTGCAACTTCAAGGAGAT--GATTTG-TAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * *
37194635 CTTTAATCTGCTCCATTGCAATTTCAGGGAGATAAGATTCATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--T-GC---TAT
* ** *
37194686 CTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * *
37194731 CTTCAATCTGCTCCACTGCAATTTTAGGGAGATAAGATTTG-TAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * *
37194775 CTTCAATCTGCTCCACTACAACTTCCGGGAGATAAGATTTG-TAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
** * * *
37194819 CTTCAATCTATTCCACTGCAACTTCAAGGAGATAAGACTTG-TAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * * **
37194863 CTTTAATCTGTTCTACTGCAATTTCAGGGAAATAAGATTCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * ***
37194908 CTTCAATCTACTCCACTGCAACTTCAGAGAAATAAGATTCATTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * **
37194953 CTTCAATCTGTTCTACTGCAACTTCAGGGAGATAAGATTCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * *
37194998 CTTCAATTTGCTCCACTACAACTTCAGAGAGATAAGATTTG-GAGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTA-T
* * * * * * *
37195043 -TTTAATCTGCTCTATTGTAACTTTAGAGAGATAAGATTTACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* *
37195087 CTTCAATTTGCTCCACTGCAACTTCAGGGAGTTAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
**
37195132 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * * *
37195176 CTTTAATTTACTCCACTACAACTTCAGGGAGACAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * **
37195221 CTTCAATCTGCTCTATTCCAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * *
37195265 CTTTAATATGCTTCACTGCAACTTCAGGGGGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
37195300 AAATCGCTAT
Statistics
Matches: 615, Mismatches: 121, Indels: 30
0.80 0.16 0.04
Matches are distributed among these distances:
42 36 0.06
44 278 0.45
45 261 0.42
46 1 0.00
48 1 0.00
49 1 0.00
51 37 0.06
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
Found at i:37194797 original size:89 final size:89
Alignment explanation
Indices: 37194505--37195299 Score: 726
Period size: 89 Copynumber: 8.9 Consensus size: 89
37194495 GTGCTTGCTG
* * * * * * * *
37194505 CTTCAATCTACTCTACTGCAACTTTAGGGAGATTAGACTTGC-AGCTTTAATCCGCTCTACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
** *
37194569 ACTTCAAAGAGATAAGACTTGTAT
66 ACTTCAGGGAGATAAGATTTGTAT
* * * * * * *
37194593 CTTCAATCTACTCCATTGCAACTTCAAGGAGAT--GATTTG-TAGCTTTAATCTGCTCCATTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* *
37194655 ATTTCAGGGAGATAAGATTCATAACTTGTAG
66 ACTTCAGGGAGATAAG----AT---TTGTAT
* ** * *
37194686 CTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* * *
37194751 ATTTTAGGGAGATAAGATTTGTAA
66 ACTTCAGGGAGATAAGATTTGTAT
* * * * **
37194775 CTTCAATCTGCTCCACTACAACTTCCGGGAGATAAGATTTG-TAACTTCAATCTATTCCACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* * *
37194839 ACTTCAAGGAGATAAGACTTGTAA
66 ACTTCAGGGAGATAAGATTTGTAT
* * * * ** *
37194863 CTTTAATCTGTTCTACTGCAATTTCAGGGAAATAAGATTCACTATCTTCAATCTACTCCACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* *
37194928 ACTTCAGAGAAATAAGATTCAT-TAT
66 ACTTCAGGGAGATAAGATT--TGTAT
* ** * *
37194953 CTTCAATCTGTTCTACTGCAACTTCAGGGAGATAAGATTCACTATCTTCAATTTGCTCCACTACA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
* *
37195018 ACTTCAGAGAGATAAGATTTGGAGT
66 ACTTCAGGGAGATAAGATTTGTA-T
* * * * * * *
37195043 -TTTAATCTGCTCTATTGTAACTTTAGAGAGATAAGATTTACTATCTTCAATTTGCTCCACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
*
37195107 ACTTCAGGGAGTTAAGATTTGCTAT
66 ACTTCAGGGAGATAAGATTTG-TAT
* ** * * * *
37195132 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TGGCTTTAATTTACTCCACTACA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
*
37195196 ACTTCAGGGAGACAAGATTTGCTAT
66 ACTTCAGGGAGATAAGATTTG-TAT
* * ** * * *
37195221 CTTCAATCTGCTCTATTCCAACTTCAGGGAGATAAGATTTG-TGGCTTTAATATGCTTCACTGCA
1 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
*
37195285 ACTTCAGGGGGATAA
66 ACTTCAGGGAGATAA
37195300 AAATCGCTAT
Statistics
Matches: 595, Mismatches: 94, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
86 37 0.06
88 102 0.17
89 264 0.44
90 115 0.19
91 1 0.00
92 2 0.00
93 33 0.06
95 6 0.01
96 35 0.06
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (89 bp):
CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
ACTTCAGGGAGATAAGATTTGTAT
Found at i:37194989 original size:134 final size:133
Alignment explanation
Indices: 37194505--37195299 Score: 655
Period size: 134 Copynumber: 5.9 Consensus size: 133
37194495 GTGCTTGCTG
* * * * * * * * * * * *
37194505 CTTCAATCTACTCTACTGCAACTTTAGGGAGATTAGACTTGC-AGCTTTAATCCGCTCTACTGCA
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
** * * * * *
37194569 ACTTCAAAGAGATAAGACTTGTATCTTCAATCTACTCCATTGCAACTTCAAGGAGAT--GATTTG
66 ACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG
*
37194632 TAG
131 TAT
* * * * * * * * *
37194635 CTTTAATCTGCTCCATTGCAATTTCAGGGAGATAAGATTCATAACTTGTAGCTTTAATCTATTCC
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATT--T-AC---TATCTTCAATCTGTTCC
* * *
37194700 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAATTTTAGGGAGATA
60 ACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
37194765 AGATTTGTAA
124 AGATTAGTAT
* * * * * *
37194775 CTTCAATCTGCTCCACTACAACTTCCGGGAGATAAGATTT-GTAACTTCAATCTATTCCACTGCA
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
* * * * * * * *
37194839 ACTTCAAGGAGATAAGACTTGTAACTTTAATCTGTTCTACTGCAATTTCAGGGAAATAAGATTCA
66 ACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-A
*
37194904 CTAT
130 GTAT
* * * * *
37194908 CTTCAATCTACTCCACTGCAACTTCAGAGAAATAAGATTCATTATCTTCAATCTGTTCTACTGCA
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
** * * * *
37194973 ACTTCAGGGAGATAAGATTCACTATCTTCAATTTGCTCCACTACAACTTCAGAGAGATAAGATTT
66 ACTTCAGGGAGATAAGATT-TGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
*
37195038 GGAGT
130 GTA-T
* * * * ** * * *
37195043 -TTTAATCTGCTCTATTGTAACTTTAGAGAGATAAGATTTACTATCTTCAATTTGCTCCACTGCA
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
* *
37195107 ACTTCAGGGAGTTAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
66 ACTTCAGGGAGATAAGATTTG-TATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
**
37195172 GTGG
130 GTAT
* * * * * * * * *
37195176 CTTTAATTTACTCCACTACAACTTCAGGGAGACAAGATTTGCTATCTTCAATCTGCTCTATTCCA
1 CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
** * * * *
37195241 ACTTCAGGGAGATAAGATTTGTGGCTTTAATATGCTTCACTGCAACTTCAGGGGGATAA
66 ACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
37195300 AAATCGCTAT
Statistics
Matches: 538, Mismatches: 111, Indels: 29
0.79 0.16 0.04
Matches are distributed among these distances:
130 31 0.06
132 37 0.07
133 108 0.20
134 219 0.41
135 34 0.06
137 35 0.07
138 32 0.06
140 42 0.08
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (133 bp):
CTTCAATCTACTCCACTACAACTTCAGAGAGATAAGATTTACTATCTTCAATCTGTTCCACTGCA
ACTTCAGGGAGATAAGATTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG
TAT
Found at i:37205836 original size:21 final size:21
Alignment explanation
Indices: 37205811--37205851 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
37205801 ATTTTACCAT
37205811 TTTGA-ATTTAGGTATCGATAA
1 TTTGACATTT-GGTATCGATAA
37205832 TTTGACATTTGGTATCGATA
1 TTTGACATTTGGTATCGATA
37205852 CAAGACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (21 bp):
TTTGACATTTGGTATCGATAA
Found at i:37215845 original size:9 final size:9
Alignment explanation
Indices: 37215831--37215901 Score: 61
Period size: 9 Copynumber: 7.6 Consensus size: 9
37215821 TTTTGCCGAA
37215831 AAATATTAT
1 AAATATTAT
37215840 AAATATTAT
1 AAATATTAT
*
37215849 AAAAATTAT
1 AAATATTAT
*
37215858 AAAATATAAT
1 -AAATATTAT
*
37215868 AAATTATTAG
1 AAA-TATTAT
* *
37215878 AAATTTTAAA
1 AAATATT-AT
*
37215888 AAATATTAA
1 AAATATTAT
37215897 AAATA
1 AAATA
37215902 CCAAATAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
9 30 0.59
10 21 0.41
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (9 bp):
AAATATTAT
Found at i:37215862 original size:19 final size:19
Alignment explanation
Indices: 37215830--37215901 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
37215820 ATTTTGCCGA
*
37215830 AAAATATTATAAATATTAT
1 AAAATATTATAAATATAAT
37215849 AAAA-ATTATAAAATATAAT
1 AAAATATTAT-AAATATAAT
* * *
37215868 AAATTATTAGAAATTTTAA-
1 AAAATATTATAAA-TATAAT
*
37215887 AAAATATTAAAAATA
1 AAAATATTATAAATA
37215902 CCAAATAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
18 6 0.14
19 29 0.67
20 8 0.19
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAATATTATAAATATAAT
Found at i:37215881 original size:10 final size:10
Alignment explanation
Indices: 37215829--37215939 Score: 51
Period size: 9 Copynumber: 11.4 Consensus size: 10
37215819 AATTTTGCCG
37215829 AAAAA-TATT
1 AAAAATTATT
37215838 ATAAATATTA-T
1 A-AAA-ATTATT
37215849 AAAAATTA-T
1 AAAAATTATT
37215858 -AAAA-TA-T
1 AAAAATTATT
37215865 AATAAATTATT
1 AA-AAATTATT
*
37215876 AGAAATT-TT
1 AAAAATTATT
*
37215885 AAAAAATATT
1 AAAAATTATT
**
37215895 AAAAA-TACC
1 AAAAATTATT
*
37215904 AAATAATTATAAA
1 AAA-AATTAT--T
*
37215917 AAAAATT-TG
1 AAAAATTATT
37215926 AAAAATTATT
1 AAAAATTATT
37215936 AAAA
1 AAAA
37215940 TTTGTAAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 25
0.70 0.08 0.22
Matches are distributed among these distances:
7 3 0.04
8 5 0.06
9 28 0.35
10 27 0.34
11 8 0.10
12 6 0.08
13 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTATT
Found at i:37215890 original size:29 final size:28
Alignment explanation
Indices: 37215829--37215901 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
37215819 AATTTTGCCG
* *
37215829 AAAAATATTATAAATATTATAAAAATTA
1 AAAAATATAATAAATATTAGAAAAATTA
* **
37215857 TAAAATATAATAAATTATTAGAAATTTTA
1 AAAAATATAATAAA-TATTAGAAAAATTA
37215886 AAAAATATTAA-AAATA
1 AAAAATA-TAATAAATA
37215902 CCAAATAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 14 0.38
29 20 0.54
30 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (28 bp):
AAAAATATAATAAATATTAGAAAAATTA
Found at i:37217217 original size:21 final size:22
Alignment explanation
Indices: 37217192--37217247 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
37217182 AGTCAATTTT
*
37217192 CACACGGGCGTGTGTTC-TGGA
1 CACACGGGCGTGTGCTCGTGGA
* *
37217213 CACACGGTCGTGT-CTCGTGGG
1 CACACGGGCGTGTGCTCGTGGA
*
37217234 CACACAGGCGTGTG
1 CACACGGGCGTGTG
37217248 AGGCTTCCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.14, C:0.27, G:0.38, T:0.21
Consensus pattern (22 bp):
CACACGGGCGTGTGCTCGTGGA
Found at i:37222258 original size:20 final size:19
Alignment explanation
Indices: 37222233--37222271 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
37222223 CAGGGTACGA
*
37222233 AAGTGCATACATGAGCATCG
1 AAGTGCAAACATGA-CATCG
37222253 AAGTGCAAACATGACATCG
1 AAGTGCAAACATGACATCG
37222272 GAGTACATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (19 bp):
AAGTGCAAACATGACATCG
Found at i:37227132 original size:37 final size:38
Alignment explanation
Indices: 37227057--37227154 Score: 117
Period size: 37 Copynumber: 2.6 Consensus size: 38
37227047 GGCTTAGACC
* **
37227057 CACTATTGTGTTGTGTAGGGTGGACGAGCATATTATAG
1 CACTATTGTGGTGTGTAGGGTGGACGAGCATACCATAG
* * *
37227095 C-CTATTGTGGTGTGCAGGGTGGACGGGCCTACCATAG
1 CACTATTGTGGTGTGTAGGGTGGACGAGCATACCATAG
* *
37227132 CACAATTGTGGTATGTAGGGTGG
1 CACTATTGTGGTGTGTAGGGTGG
37227155 TCGGAGTGGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
37 31 0.62
38 19 0.38
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.30
Consensus pattern (38 bp):
CACTATTGTGGTGTGTAGGGTGGACGAGCATACCATAG
Found at i:37228679 original size:18 final size:18
Alignment explanation
Indices: 37228658--37228696 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37228648 TTGATTTTCG
*
37228658 AATTCGAAT-AACTCGAAT
1 AATTCAAATAAAC-CGAAT
37228676 AATTCAAATAAACCGAAT
1 AATTCAAATAAACCGAAT
37228694 AAT
1 AAT
37228697 AAACTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.51, C:0.15, G:0.08, T:0.26
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:37228780 original size:30 final size:31
Alignment explanation
Indices: 37228745--37228804 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
37228735 ACCTATCTAC
37228745 TTTCCCCCAAAACTTTTACTC-CCTCCCATT
1 TTTCCCCCAAAACTTTTACTCTCCTCCCATT
*
37228775 TTTCCCCCAAAACTTTTATTCTCCTCCCAT
1 TTTCCCCCAAAACTTTTACTCTCCTCCCAT
37228805 CCCAACCCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.20, C:0.42, G:0.00, T:0.38
Consensus pattern (31 bp):
TTTCCCCCAAAACTTTTACTCTCCTCCCATT
Found at i:37228964 original size:126 final size:126
Alignment explanation
Indices: 37228772--37229045 Score: 326
Period size: 126 Copynumber: 2.2 Consensus size: 126
37228762 ACTCCCTCCC
* * ***
37228772 ATTTTTCCCCCAAAACTTTTATTCTCCTCCCATCCCAACCCCTTTCTACCACAAACTCATTTCCT
1 ATTTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCAACCCCTTTCTACCACAAACTCACCCCCT
* *
37228837 CCC-ATTTTCTTTTTGAATATT-TCCCCCCAAAATTTTACTCCCTCAACCGTCAAAACTTCTT
66 CCCTA-ATT-TTTTTAAATATTCTCCCCCCAAAATTTTACTCCCTCAACCGTCAAAACTTCTT
* *
37228898 ATTTTTCCCCCAAAACTTTTACTCCCCTCTCATCCC-ACCTCC-TTCTACCCCAAACCCTC-CCC
1 ATTTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCAACC-CCTTTCTACCACAAA--CTCACCC
* * * *
37228960 CCTCCCTAATTTTTTTAAATATTCTCCCCCCTAAATTTTACTCCCTCAACCTTCAAAATTTTTT
63 CCTCCCTAATTTTTTTAAATATTCTCCCCCCAAAATTTTACTCCCTCAACCGTCAAAACTTCTT
* *
37229024 A-TTTTCCCTCTAAACTTTTACT
1 ATTTTTCCCCCAAAACTTTTACT
37229046 TCTCACCTTT
Statistics
Matches: 128, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
125 44 0.34
126 80 0.62
127 4 0.03
ACGTcount: A:0.23, C:0.38, G:0.01, T:0.38
Consensus pattern (126 bp):
ATTTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCAACCCCTTTCTACCACAAACTCACCCCCT
CCCTAATTTTTTTAAATATTCTCCCCCCAAAATTTTACTCCCTCAACCGTCAAAACTTCTT
Found at i:37230705 original size:15 final size:15
Alignment explanation
Indices: 37230685--37230714 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37230675 AATTATTTCA
37230685 CTGACAATAAACCTG
1 CTGACAATAAACCTG
37230700 CTGACAATAAACCTG
1 CTGACAATAAACCTG
37230715 ATAGGCACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (15 bp):
CTGACAATAAACCTG
Found at i:37231213 original size:76 final size:77
Alignment explanation
Indices: 37231118--37231260 Score: 191
Period size: 76 Copynumber: 1.9 Consensus size: 77
37231108 CAATACAAAA
* *
37231118 ACTTATACATGTATATACATACATATTCGAAATTACATATAC-ATACATAACATTCATACCTTTA
1 ACTTATACATGTATATACATACATATTCCAAATCACATATACAATACATAACATTCATACCTTTA
37231182 AATATATTCAAG
66 AATATATTCAAG
* * * * *
37231194 ACTTATTCATG-AGTATACATATATGTTCCAACTCACATATACATATATATAACATTCATACCTT
1 ACTTATACATGTA-TATACATACATATTCCAAATCACATATACA-ATACATAACATTCATACCTT
37231258 TAA
64 TAA
37231261 CCAAGTCCAA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
75 1 0.02
76 34 0.60
78 22 0.39
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (77 bp):
ACTTATACATGTATATACATACATATTCCAAATCACATATACAATACATAACATTCATACCTTTA
AATATATTCAAG
Found at i:37232733 original size:34 final size:34
Alignment explanation
Indices: 37232690--37232759 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
37232680 TTTCATGAAC
37232690 AAATAAGATGCTTAAAACAATATGTAACCCATGT
1 AAATAAGATGCTTAAAACAATATGTAACCCATGT
* *
37232724 AAATGAGATGCTTAAAACAATATGTAACTCATGT
1 AAATAAGATGCTTAAAACAATATGTAACCCATGT
37232758 AA
1 AA
37232760 TCAAAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (34 bp):
AAATAAGATGCTTAAAACAATATGTAACCCATGT
Found at i:37240856 original size:15 final size:17
Alignment explanation
Indices: 37240830--37240862 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37240820 TTACAATAAT
37240830 AATTAGTATAGTA-ACA
1 AATTAGTATAGTATACA
37240846 AATTA-TATAGTATACA
1 AATTAGTATAGTATACA
37240862 A
1 A
37240863 GTCCTACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (17 bp):
AATTAGTATAGTATACA
Found at i:37250276 original size:6 final size:6
Alignment explanation
Indices: 37250259--37250293 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
37250249 AATTCCAACC
37250259 AAAATT -AAATT AAAATT AAAATT AAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
37250294 TTAAATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAAATT
Found at i:37252322 original size:27 final size:27
Alignment explanation
Indices: 37252292--37252539 Score: 268
Period size: 27 Copynumber: 9.2 Consensus size: 27
37252282 AAATAGATAT
* *
37252292 AATGACCGTAATGCCCTTATAGGGTAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
* * *
37252319 AATGATCGTAATGTCCTTGTAGGGTAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
**
37252346 AATGAATGTAATGCCCCTGTAGGGTAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
* * * *
37252373 AAAGACCATAATGCCCTTGTAGGATAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
* * *
37252400 AATGACTGTAATACCCCTGTAGGATAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
* * *
37252427 AATGACCGTAATACTCCC-ATAGGATAA
1 AATGACCGTAATGC-CCCTGTAGGGTAA
*
37252454 AATGATCGTAATGCCCCTGTAGGGTAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
* * *
37252481 AATGACTGTAATGCCCCTATTGGGTAA
1 AATGACCGTAATGCCCCTGTAGGGTAA
37252508 AATGACCGTAATGCCCCTAG-AGGGT-A
1 AATGACCGTAATGCCCCT-GTAGGGTAA
37252534 AATGAC
1 AATGAC
37252540 TATTTTGCCC
Statistics
Matches: 187, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
26 10 0.05
27 174 0.93
28 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AATGACCGTAATGCCCCTGTAGGGTAA
Found at i:37252572 original size:26 final size:25
Alignment explanation
Indices: 37252519--37252596 Score: 70
Period size: 26 Copynumber: 3.1 Consensus size: 25
37252509 ATGACCGTAA
*
37252519 TGCCCCTAGAGGGTAAATGACTATTT
1 TGCCCCT-GAGTGTAAATGACTATTT
*
37252545 TGCCCCTCGAGTGTAAATGATTGA-TT
1 TGCCCCT-GAGTGTAAATGACT-ATTT
* * *
37252571 TGTCCATGA-TGTAAATGACTAATT
1 TGCCCCTGAGTGTAAATGACTATTT
37252595 TG
1 TG
37252597 TCTGTGATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 14 0.32
25 2 0.05
26 26 0.59
27 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (25 bp):
TGCCCCTGAGTGTAAATGACTATTT
Found at i:37252604 original size:24 final size:24
Alignment explanation
Indices: 37252531--37252598 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
37252521 CCCCTAGAGG
* * *
37252531 GTAAATGACTATTTTGCCCCTCGAGT
1 GTAAATGACTAATTTGTCCAT-GA-T
* *
37252557 GTAAATGATTGATTTGTCCATGAT
1 GTAAATGACTAATTTGTCCATGAT
37252581 GTAAATGACTAATTTGTC
1 GTAAATGACTAATTTGTC
37252599 TGTGATTTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
24 17 0.49
25 2 0.06
26 16 0.46
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (24 bp):
GTAAATGACTAATTTGTCCATGAT
Found at i:37252720 original size:27 final size:27
Alignment explanation
Indices: 37252682--37252746 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
37252672 ATGGAGGAAG
37252682 TACTG-TACTGGTGGCTCCGCCACA-A
1 TACTGTTACTGGTGGCTCCGCCACATA
**
37252707 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTCCGCCACATA
*
37252735 TACTATTACTGG
1 TACTGTTACTGG
37252747 CAGCTTTGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.12
27 27 0.79
28 2 0.06
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTCCGCCACATA
Found at i:37252752 original size:27 final size:27
Alignment explanation
Indices: 37252700--37252752 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
37252690 TGGTGGCTCC
* **
37252700 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
37252727 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
37252753 TGCTGGGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:37252833 original size:32 final size:32
Alignment explanation
Indices: 37252788--37252960 Score: 204
Period size: 32 Copynumber: 5.4 Consensus size: 32
37252778 TTACTACGAT
* *
37252788 GTTACTGATGGCTTTGTGGCTATCATATTACC
1 GTTACTGATGGCTTTGTGCCGATCATATTACC
* * * *
37252820 GTTACTGACGGCTTTGTGCTGGTCATATTATC
1 GTTACTGATGGCTTTGTGCCGATCATATTACC
37252852 GTTACTGATGGCTTTGTGCCGATCATATTACC
1 GTTACTGATGGCTTTGTGCCGATCATATTACC
* * * * *
37252884 GATACTGATGGCTATGTGCCGATCACATCACT
1 GTTACTGATGGCTTTGTGCCGATCATATTACC
* * *
37252916 GCTACTGATGGCTTTGTGCCAATCATATTACT
1 GTTACTGATGGCTTTGTGCCGATCATATTACC
*
37252948 G-TACTTATGGCTT
1 GTTACTGATGGCTT
37252961 GTAGCCATCT
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
31 11 0.09
32 109 0.91
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (32 bp):
GTTACTGATGGCTTTGTGCCGATCATATTACC
Found at i:37259412 original size:23 final size:23
Alignment explanation
Indices: 37259380--37259478 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
37259370 AGTGTTATTG
*
37259380 ATCAGAGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37259403 ATCAATGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
37259426 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37259449 ATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37259472 ATCAGTG
1 ATCAGTG
37259479 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:37260864 original size:23 final size:23
Alignment explanation
Indices: 37260832--37260906 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
37260822 GCATAACTGC
37260832 TAAATT-AGGAGCACCAAAATGG
1 TAAATTCAGGAGCACCAAAATGG
** * *
37260854 TAGTTTCAGGAGCACCAAAGTGT
1 TAAATTCAGGAGCACCAAAATGG
* * *
37260877 TAAATTCAGGAGCACCGAAGTGC
1 TAAATTCAGGAGCACCAAAATGG
37260900 TAAATTC
1 TAAATTC
37260907 TCAAGTGCTA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 4 0.09
23 40 0.91
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (23 bp):
TAAATTCAGGAGCACCAAAATGG
Found at i:37267302 original size:28 final size:27
Alignment explanation
Indices: 37267269--37267367 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 27
37267259 TAATGAGATT
37267269 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
37267296 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
37267325 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
37267353 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37267368 TGCTTATTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 56 0.92
29 3 0.05
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:37268324 original size:22 final size:22
Alignment explanation
Indices: 37268299--37268420 Score: 95
Period size: 22 Copynumber: 5.3 Consensus size: 22
37268289 TTTGTGTTAT
37268299 AAATTTAATGTATAATGCTGTC
1 AAATTTAATGTATAATGCTGTC
37268321 AAATTTTAA-GTATATTGATGCTGTC
1 AAA-TTTAATGTATA---ATGCTGTC
* *
37268346 CATTTTAATGTATAATGCTGTCC
1 AAATTTAATGTATAATGCTGT-C
* *
37268369 AATTTTGA-GTATATTGATGCTGTC
1 AAATTTAATGTATA---ATGCTGTC
* *
37268393 CATTTTAATGTATAATGCTGTC
1 AAATTTAATGTATAATGCTGTC
*
37268415 CAATTT
1 AAATTT
37268421 TGAGTATATT
Statistics
Matches: 83, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
22 33 0.40
23 12 0.14
24 12 0.14
25 26 0.31
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (22 bp):
AAATTTAATGTATAATGCTGTC
Found at i:37268373 original size:47 final size:47
Alignment explanation
Indices: 37268302--37268487 Score: 243
Period size: 47 Copynumber: 4.0 Consensus size: 47
37268292 GTGTTATAAA
*
37268302 TTTAATGTATAATGCTGTCAAATTTTAAGTATATTGATGCTGTCCAT
1 TTTAATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGTCCAT
*
37268349 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCCAT
1 TTTAATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGTCCAT
* * * * *
37268396 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTTAAGCTGTCTAA
1 TTTAATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGTCCAT
** *
37268443 TTCGATGTATAATGCTGTCC-A-TTTAGAGCATATT-ATTGCTGTCCA
1 TTTAATGTATAATGCTGTCCAATTTTA-AGTATATTGA-TGCTGTCCA
37268488 AAACAGGGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
45 4 0.03
46 15 0.12
47 106 0.85
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (47 bp):
TTTAATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGTCCAT
Found at i:37268444 original size:25 final size:24
Alignment explanation
Indices: 37268313--37268488 Score: 138
Period size: 25 Copynumber: 7.5 Consensus size: 24
37268303 TTAATGTATA
* *
37268313 ATGCTGTCAAATTTTAAGTATATT
1 ATGCTGTCCAATTTTGAGTATATT
*
37268337 GATGCTGTCC-ATTTTAATGTATA--
1 -ATGCTGTCCAATTTTGA-GTATATT
37268360 ATGCTGTCCAATTTTGAGTATATT
1 ATGCTGTCCAATTTTGAGTATATT
*
37268384 GATGCTGTCC-ATTTTAATGTATA--
1 -ATGCTGTCCAATTTTGA-GTATATT
37268407 ATGCTGTCCAATTTTGAGTATATTT
1 ATGCTGTCCAATTTTGAGTATA-TT
* * *
37268432 AAGCTGTCTAA-TTCGATGTATA--
1 ATGCTGTCCAATTTTGA-GTATATT
* *
37268454 ATGCTGTCC-ATTTAGAGCATATT
1 ATGCTGTCCAATTTTGAGTATATT
37268477 ATTGCTGTCCAA
1 A-TGCTGTCCAA
37268489 AACAGGGTTG
Statistics
Matches: 124, Mismatches: 11, Indels: 32
0.74 0.07 0.19
Matches are distributed among these distances:
21 5 0.04
22 39 0.31
23 13 0.10
24 25 0.20
25 42 0.34
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (24 bp):
ATGCTGTCCAATTTTGAGTATATT
Found at i:37269535 original size:93 final size:93
Alignment explanation
Indices: 37269376--37269561 Score: 363
Period size: 93 Copynumber: 2.0 Consensus size: 93
37269366 AAATAACACA
37269376 ATCATACAAAACTATGCTTCGCATAATATTCATCACAAAGATTAGTTAAGTGTATAATCTTCCAA
1 ATCATACAAAACTATGCTTCGCATAATATTCATCACAAAGATTAGTTAAGTGTATAATCTTCCAA
37269441 AGTCATACTATCATAGTTTACCGAAACT
66 AGTCATACTATCATAGTTTACCGAAACT
*
37269469 ATCATACAAAACTGTGCTTCGCATAATATTCATCACAAAGATTAGTTAAGTGTATAATCTTCCAA
1 ATCATACAAAACTATGCTTCGCATAATATTCATCACAAAGATTAGTTAAGTGTATAATCTTCCAA
37269534 AGTCATACTATCATAGTTTACCGAAACT
66 AGTCATACTATCATAGTTTACCGAAACT
37269562 CCTAACGTAA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (93 bp):
ATCATACAAAACTATGCTTCGCATAATATTCATCACAAAGATTAGTTAAGTGTATAATCTTCCAA
AGTCATACTATCATAGTTTACCGAAACT
Found at i:37275162 original size:16 final size:16
Alignment explanation
Indices: 37275141--37275172 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37275131 CTTAAACTTA
37275141 TTCTGATCCTTCCAAC
1 TTCTGATCCTTCCAAC
37275157 TTCTGATCCTTCCAAC
1 TTCTGATCCTTCCAAC
37275173 GATCACCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.38, G:0.06, T:0.38
Consensus pattern (16 bp):
TTCTGATCCTTCCAAC
Found at i:37279032 original size:29 final size:29
Alignment explanation
Indices: 37279000--37279059 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
37278990 AACATTTTCA
37279000 TACTCAAATAATCAAAATAGACATGAAAC
1 TACTCAAATAATCAAAATAGACATGAAAC
37279029 TACTCAAATAATCAAAATAGACATGAAAC
1 TACTCAAATAATCAAAATAGACATGAAAC
37279058 TA
1 TA
37279060 TTACTAAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.22
Consensus pattern (29 bp):
TACTCAAATAATCAAAATAGACATGAAAC
Found at i:37281314 original size:307 final size:305
Alignment explanation
Indices: 37280696--37281271 Score: 744
Period size: 307 Copynumber: 1.9 Consensus size: 305
37280686 TTCTTGTAAG
* * * * *
37280696 AAAAACACTACAAAGAAGTAAGTCCTACAAAACTACATAAAACATCTTTAGAGTGTCGTTGTGTA
1 AAAAACACCACAAAGAAGCAAGTCCTACAAAACTACATAAAACATCTCTAGAGTGTCGCTGTATA
* *
37280761 GGTAAAGTTTGCAAGGTGAATGTCATTTGCAGTGGCAGAGCCAAGAGGGGTAGGCAGGGGCCCCG
66 GGTAAAGTTTGCAAGGTGAATGTCATTTGCAGTGACAGAGCCAAGAGGGGCAGGCAGGGGCCCCG
* * * *
37280826 ACCCTCTTAAAATGGAAAATTTTACATTTAGCCCTTTTATAAGTTATAAAATTTTAAATTAAAAA
131 ACCCCCCTAAAATAGAAAATTTTACAGTTAGCCCTTTTATAAGTTATAAAATTTTAAATTAAAAA
** * ** *
37280891 TGGTAAAATTGCACTTTAGCTCCTAAAAATAATAAAAATTTGATTTATCCTTTAAAATTTTGATT
196 TAATAAAATTACACTTTAGCTCCTAAAAATAATAAAAATTTGATTTATCCTTTAAAATAGTGAAT
* * ***
37280956 TAATTTCATAAATGAAGTAATAAACAATCTCAAAGCATTGCTGTAAA
261 TAATTTCATAAATGAAGAAATAAACAATCT-AAA-CATTCCCAAAAA
*
37281003 AAAAACACCACAAAGAAGCAAGTCCTACAAAATTACATAAAACATCTCTAGAGTGTCGCTGTATA
1 AAAAACACCACAAAGAAGCAAGTCCTACAAAACTACATAAAACATCTCTAGAGTGTCGCTGTATA
* * * **
37281068 GGTAAAGTTTGGAAGGTGAATGTCATTTGCAGTGACGGAGCTAAGAGGGGCAGGCAGGGGCCTTG
66 GGTAAAGTTTGCAAGGTGAATGTCATTTGCAGTGACAGAGCCAAGAGGGGCAGGCAGGGGCCCCG
* **
37281133 ACTCACCCCTAAAATAGAAAATTTT-CAGTTAGGCCTTTTATAAGTTATAAAATTTTAAATTAGT
131 AC-C-CCCCTAAAATAGAAAATTTTACAGTTAGCCCTTTTATAAGTTATAAAATTTTAAATTAAA
* * * *
37281197 AATAATAAAATTACACTTTAGC-CCTCCAAAATAATAAAAGTTTGATTTGT-TTATTAAAATAGT
194 AATAATAAAATTACACTTTAGCTCCT-AAAAATAATAAAAATTTGATTTATCCT-TTAAAATAGT
37281260 GAAATTACATTT
257 G-AATTA-ATTT
37281272 TTACTATTGT
Statistics
Matches: 233, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
307 123 0.53
308 85 0.36
309 21 0.09
310 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (305 bp):
AAAAACACCACAAAGAAGCAAGTCCTACAAAACTACATAAAACATCTCTAGAGTGTCGCTGTATA
GGTAAAGTTTGCAAGGTGAATGTCATTTGCAGTGACAGAGCCAAGAGGGGCAGGCAGGGGCCCCG
ACCCCCCTAAAATAGAAAATTTTACAGTTAGCCCTTTTATAAGTTATAAAATTTTAAATTAAAAA
TAATAAAATTACACTTTAGCTCCTAAAAATAATAAAAATTTGATTTATCCTTTAAAATAGTGAAT
TAATTTCATAAATGAAGAAATAAACAATCTAAACATTCCCAAAAA
Found at i:37285307 original size:42 final size:42
Alignment explanation
Indices: 37285260--37285348 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
37285250 TTATGAGGAA
*
37285260 GTTGAAAATTTGCAGAATGATGATGATCTCAAGAGTAC-GTTG
1 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACAG-TG
37285302 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACAGTG
1 GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACAGTG
37285344 GTTGA
1 GTTGA
37285349 TTCGGAGTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (42 bp):
GTTGAAAATTTGCAGAATGATGATGATCTAAAGAGTACAGTG
Found at i:37286945 original size:31 final size:31
Alignment explanation
Indices: 37286910--37286971 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37286900 GTAGAGAGAA
37286910 TAAAATCAATAATGAACTTTGTTGTATGGAT
1 TAAAATCAATAATGAACTTTGTTGTATGGAT
37286941 TAAAATCAATAATGAACTTTGTTGTATGGAT
1 TAAAATCAATAATGAACTTTGTTGTATGGAT
37286972 GCAAACATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (31 bp):
TAAAATCAATAATGAACTTTGTTGTATGGAT
Found at i:37287108 original size:22 final size:22
Alignment explanation
Indices: 37287083--37287126 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
37287073 TATATGGGTG
37287083 ACAAAAAAATTCTTATGCTTCA
1 ACAAAAAAATTCTTATGCTTCA
37287105 ACAAAAAAATTCTTATGCTTCA
1 ACAAAAAAATTCTTATGCTTCA
37287127 TACATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (22 bp):
ACAAAAAAATTCTTATGCTTCA
Found at i:37287445 original size:20 final size:19
Alignment explanation
Indices: 37287417--37287497 Score: 83
Period size: 20 Copynumber: 4.1 Consensus size: 19
37287407 ATTATAAAAT
37287417 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTT-AAA
* * *
37287437 AATTTAAAATGATTTTTAA
1 AATTCAAAATAATTTTAAA
37287456 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTT-TAAA
*
37287475 AATTTCAAAATAAATTCTAAA
1 AA-TTCAAAAT-AATTTTAAA
37287496 AA
1 AA
37287498 ATATATGAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
18 4 0.08
19 16 0.31
20 22 0.43
21 6 0.12
22 3 0.06
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (19 bp):
AATTCAAAATAATTTTAAA
Found at i:37287459 original size:19 final size:19
Alignment explanation
Indices: 37287434--37287486 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
37287424 AATAATTTTC
37287434 AAAAATTTAAAATGATTT-T
1 AAAAATTTAAAAT-ATTTAT
* *
37287453 TAAAATTCAAAATATTTAT
1 AAAAATTTAAAATATTTAT
37287472 AAAAATTTCAAAATA
1 AAAAATTT-AAAATA
37287487 AATTCTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 4 0.14
19 18 0.64
20 6 0.21
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAATTTAAAATATTTAT
Found at i:37287496 original size:39 final size:39
Alignment explanation
Indices: 37287417--37287496 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
37287407 ATTATAAAAT
* * *
37287417 AATTCAAAATAATTTTCAAAAATTTAAAATGATTTTTAA
1 AATTCAAAATAATTTTCAAAAATTTAAAATAAATTCTAA
37287456 AATTCAAAAT-ATTTAT-AAAAATTTCAAAATAAATTCTAA
1 AATTCAAAATAATTT-TCAAAAATTT-AAAATAAATTCTAA
37287495 AA
1 AA
37287497 AATATATGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 12 0.33
39 24 0.67
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (39 bp):
AATTCAAAATAATTTTCAAAAATTTAAAATAAATTCTAA
Found at i:37288931 original size:16 final size:15
Alignment explanation
Indices: 37288910--37288939 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37288900 AAATGATTCA
37288910 TATATAAACTTTTTTT
1 TATATAAA-TTTTTTT
37288926 TATATAAATTTTTT
1 TATATAAATTTTTT
37288940 ACCCAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TATATAAATTTTTTT
Found at i:37292255 original size:24 final size:25
Alignment explanation
Indices: 37292205--37292255 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
37292195 GACTCAAATT
* **
37292205 AAAATTTTTATTTATTTATTTTATA
1 AAAATTTTAATTTATTTATAATATA
*
37292230 AAAATTTTAATTT-TTTATAATGTA
1 AAAATTTTAATTTATTTATAATATA
37292254 AA
1 AA
37292256 CATAAATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
AAAATTTTAATTTATTTATAATATA
Found at i:37297608 original size:25 final size:24
Alignment explanation
Indices: 37297571--37297617 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
37297561 GTGTTCACGC
*
37297571 TATATGTTATAAAAATAATATACT
1 TATATATTATAAAAATAATATACT
*
37297595 TATATATTCATAAAAATATTATA
1 TATATATT-ATAAAAATAATATA
37297618 ATTTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (24 bp):
TATATATTATAAAAATAATATACT
Found at i:37298257 original size:43 final size:43
Alignment explanation
Indices: 37298191--37298349 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
37298181 TTTATGTGGA
* ** *
37298191 AAACACCGCTATAGAACATGATCTTTAGCAACGCTTTCCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
* *
37298234 AAACGCCGCTATAGAACATGATCTTTCGCGGTGCTTTTCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
* *
37298277 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
* *
37298320 AAACGCCACTATAGAACATGATATTTAGCG
1 AAACGCCGCTATAGAACATGATCTTTAGCG
37298350 AGACTTTTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 104 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
Found at i:37298341 original size:86 final size:86
Alignment explanation
Indices: 37298191--37298397 Score: 242
Period size: 86 Copynumber: 2.4 Consensus size: 86
37298181 TTTATGTGGA
* * ** * * *
37298191 AAACACCGCTATAGAACATGATCTTTAGCAACGCTTTCCCTACAAACGCCGCTATAGAACATGAT
1 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTACAAACGCCACTATAGAACATGAT
* * * *
37298256 CTTTCGCG-GTGCTTTTCCTAC
66 ATTTAGCGAG-ACTTTTACTAC
37298277 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTACAAACGCCACTATAGAACATGAT
1 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTACAAACGCCACTATAGAACATGAT
*
37298342 ATTTAGCGAGACTTTTATTAC
66 ATTTAGCGAGACTTTTACTAC
* * *
37298363 AAACGCCG--AAAGAATATG-TTTTTAGCGGCATTTTT
1 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTT
37298398 TTTACAAGTG
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
83 16 0.15
84 8 0.08
86 80 0.76
87 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (86 bp):
AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTACAAACGCCACTATAGAACATGAT
ATTTAGCGAGACTTTTACTAC
Found at i:37298356 original size:43 final size:43
Alignment explanation
Indices: 37298191--37298370 Score: 227
Period size: 43 Copynumber: 4.2 Consensus size: 43
37298181 TTTATGTGGA
* ** * *
37298191 AAACACCGCTATAGAACATGATCTTTAGCAACGCTTTCCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCACTTTTCCTAC
* **
37298234 AAACGCCGCTATAGAACATGATCTTTCGCGGTGCTTTTCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCACTTTTCCTAC
*
37298277 AAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCCTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCGGCACTTTTCCTAC
* * **
37298320 AAACGCCACTATAGAACATGATATTTAGCGAG-ACTTTTATTAC
1 AAACGCCGCTATAGAACATGATCTTTAGCG-GCACTTTTCCTAC
37298363 AAACGCCG
1 AAACGCCG
37298371 AAAGAATATG
Statistics
Matches: 121, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
43 120 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGATCTTTAGCGGCACTTTTCCTAC
Found at i:37298403 original size:40 final size:41
Alignment explanation
Indices: 37298231--37298404 Score: 129
Period size: 43 Copynumber: 4.1 Consensus size: 41
37298221 ACGCTTTCCC
* * * ** **
37298231 TACAAACGCCGCTATAGAACATGATCTTTCGCGGTGCTTTTCC
1 TACAAACGCCG--AAAGAACATGATTTTTAGCGGCACTTTTAT
* **
37298274 TACAAACGCCGCTATAGAACATGATTTTTAGCGGCACTTTTCC
1 TACAAACGCCG--AAAGAACATGATTTTTAGCGGCACTTTTAT
*
37298317 TACAAACGCC-ACTATAGAACATGATATTTAGCGAG-ACTTTTAT
1 TACAAACGCCGA--A-AGAACATGATTTTTAGCG-GCACTTTTAT
* * *
37298360 TACAAACGCCGAAAGAATATG-TTTTTAGCGGCATTTTTTT
1 TACAAACGCCGAAAGAACATGATTTTTAGCGGCACTTTTAT
37298400 TACAA
1 TACAA
37298405 GTGCCGCAAG
Statistics
Matches: 113, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
39 1 0.01
40 20 0.18
41 7 0.06
42 1 0.01
43 82 0.73
44 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (41 bp):
TACAAACGCCGAAAGAACATGATTTTTAGCGGCACTTTTAT
Found at i:37298827 original size:21 final size:21
Alignment explanation
Indices: 37298801--37298847 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37298791 TTTTCTTGTT
* *
37298801 GCCTCTGCTACCCTTGCTGCC
1 GCCTCTACTACCCTCGCTGCC
* *
37298822 GCCTCTACTTCCCTCGCTGCT
1 GCCTCTACTACCCTCGCTGCC
37298843 GCCTC
1 GCCTC
37298848 CACTTTAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.49, G:0.17, T:0.30
Consensus pattern (21 bp):
GCCTCTACTACCCTCGCTGCC
Found at i:37298852 original size:21 final size:21
Alignment explanation
Indices: 37298811--37298852 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37298801 GCCTCTGCTA
* *
37298811 CCCTTGCTGCCGCCTCTACTT
1 CCCTCGCTGCCGCCTCCACTT
*
37298832 CCCTCGCTGCTGCCTCCACTT
1 CCCTCGCTGCCGCCTCCACTT
37298853 TAAGTTGTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.50, G:0.14, T:0.31
Consensus pattern (21 bp):
CCCTCGCTGCCGCCTCCACTT
Found at i:37309218 original size:27 final size:27
Alignment explanation
Indices: 37309178--37309238 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
37309168 GGGAAAGGTT
* *
37309178 GTAAAATTATCGAAATACCCTCG-ATGG
1 GTAAAATTACCGAAATACCCCCGTA-GG
37309205 GTAAAATTACCGAAATACCCCCGTAGG
1 GTAAAATTACCGAAATACCCCCGTAGG
37309232 GTAAAAT
1 GTAAAAT
37309239 AACGATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCCGTAGG
Found at i:37309848 original size:28 final size:28
Alignment explanation
Indices: 37309720--37309847 Score: 202
Period size: 28 Copynumber: 4.6 Consensus size: 28
37309710 TACTGTGTGA
*
37309720 GGCTAAGGCCCACACTAATTTTGTATTG
1 GGCTAAGGCCCACACTAATTCTGTATTG
*
37309748 GGCTAAGGCCAACACTAATTCTGTATTG
1 GGCTAAGGCCCACACTAATTCTGTATTG
*
37309776 GGCTAAGGCCAACACTAATTCTGTATTG
1 GGCTAAGGCCCACACTAATTCTGTATTG
* *
37309804 GGCTAAGGCTCACACTGATTCTGTATTG
1 GGCTAAGGCCCACACTAATTCTGTATTG
*
37309832 GGCTAAAGCCCACACT
1 GGCTAAGGCCCACACT
37309848 GTACTGTTAC
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 93 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (28 bp):
GGCTAAGGCCCACACTAATTCTGTATTG
Found at i:37312556 original size:64 final size:65
Alignment explanation
Indices: 37312377--37312557 Score: 227
Period size: 64 Copynumber: 2.9 Consensus size: 65
37312367 GCAAACAAAC
37312377 ATTC-GAACCACATATGTATA-AT--TTACA-ACATTAAATTTCAGCTCAAAGAA-TTTGTAACC
1 ATTCTGAACCACATATGTATATATAATT-CATACATTAAA-TTCAGCTC-AAGAACTTTGTAACC
37312436 TAT
63 TAT
* * *
37312439 ATTCT-AACCACATATGTATGTAAAATTCATACATTAAATTCCGCTC-AGAAACTTTGTAACCTA
1 ATTCTGAACCACATATGTATATATAATTCATACATTAAATTCAGCTCAAG-AACTTTGTAACCTA
37312502 T
65 T
*
37312503 ATT-TGAACCACATATGTATATATAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCTGAACCACATATGTATATATAATTCATACATTAAATTCAGCTCAAGAACTTT
37312558 AAATATATAT
Statistics
Matches: 103, Mismatches: 7, Indels: 16
0.82 0.06 0.13
Matches are distributed among these distances:
62 20 0.19
63 4 0.04
64 67 0.65
65 12 0.12
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (65 bp):
ATTCTGAACCACATATGTATATATAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:37316121 original size:43 final size:44
Alignment explanation
Indices: 37316039--37316269 Score: 257
Period size: 43 Copynumber: 5.4 Consensus size: 44
37316029 CGAGGTTACA
* * *
37316039 TGTAAGACCATATCTGGGATA-TGGCATCTATATGAGAATTT-G
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAATTTCG
37316081 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAA-TTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAATTTCG
*
37316124 TGTAAGACCATGTCTGGGACATTGGCATCG--ATGTG-ATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAATTTCG
* * *
37316165 TGTAAGACCATGTCTAGGACAGTGGCATCGATATGTG-ATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAATTTCG
* * * *
37316208 TGTAAGACCATAG-CTAGG-CTATTGGCATCGATACGAG-ATTACA
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATATGAGAATTTCG
* *
37316251 TCTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
37316270 TATGATATTG
Statistics
Matches: 166, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
40 1 0.01
41 36 0.22
42 22 0.13
43 106 0.64
44 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGAATTTCG
Found at i:37316185 original size:84 final size:84
Alignment explanation
Indices: 37316039--37316239 Score: 248
Period size: 84 Copynumber: 2.4 Consensus size: 84
37316029 CGAGGTTACA
* * * * *
37316039 TGTAAGACCATATCTGGGATA-TGGCATCTATATGAGAATTTGTGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACATTGGCATC--GATGAGAATTTGTGTAAGACCATGTCTAGGACAG
37316103 TGGCATCGATATGAGAATTCG
64 TGGCATCGATATGAGAATTCG
*
37316124 TGTAAGACCATGTCTGGGACATTGGCATCGATGTG-ATTTCGTGTAAGACCATGTCTAGGACAGT
1 TGTAAGACCATGTCTGGGACATTGGCATCGATGAGAATTT-GTGTAAGACCATGTCTAGGACAGT
* *
37316188 GGCATCGATATGTGATTTCG
65 GGCATCGATATGAGAATTCG
*
37316208 TGTAAGACCATAG-CTAGG-CTATTGGCATCGAT
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATCGAT
37316240 ACGAGATTAC
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
83 5 0.05
84 71 0.69
85 20 0.19
86 7 0.07
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATGAGAATTTGTGTAAGACCATGTCTAGGACAGTG
GCATCGATATGAGAATTCG
Found at i:37316240 original size:127 final size:126
Alignment explanation
Indices: 37316039--37316269 Score: 299
Period size: 127 Copynumber: 1.8 Consensus size: 126
37316029 CGAGGTTACA
* * * *
37316039 TGTAAGACCATATCTGGGATATGGCATCTATATGAGAATTTGTGTAAGACCATGTCTGGGACATT
1 TGTAAGACCATATCTAGGACATGGCATCGATATGAGAATTTGTGTAAGACCATGTCTAGGACATT
* * * *
37316104 GGCATCGATATGAGAATT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATGTGATTTCG
66 GGCATCGATACGAG-ATTACATCTAAGACCATATCTGGGACATTGGCATCGATGTGATTTCG
* *
37316165 TGTAAGACCATGTCTAGGACAGTGGCATCGATATGTG-ATTTCGTGTAAGACCATAG-CTAGG-C
1 TGTAAGACCATATCTAGGACA-TGGCATCGATATGAGAATTT-GTGTAAGACCAT-GTCTAGGAC
37316227 TATTGGCATCGATACGAGATTACATCTAAGACCATATCTGGGA
63 -ATTGGCATCGATACGAGATTACATCTAAGACCATATCTGGGA
37316270 TATGATATTG
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
126 26 0.29
127 63 0.70
128 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (126 bp):
TGTAAGACCATATCTAGGACATGGCATCGATATGAGAATTTGTGTAAGACCATGTCTAGGACATT
GGCATCGATACGAGATTACATCTAAGACCATATCTGGGACATTGGCATCGATGTGATTTCG
Found at i:37318007 original size:40 final size:40
Alignment explanation
Indices: 37317938--37318085 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
37317928 ACCAAAAATT
*
37317938 TATTTTAAAAATTAAAAAAAAATTTAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAAAAAAATTAAAAAAGTATTTTAAAAA
*
37317980 TATTTTTAAATTAAAAAAAATTAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAGTATTTTAAAAA
* * *
37318020 -A-TTTAAAATTTAAAAAATTTAAAAAAAGTATTTTAAAAG
1 TATTTTAAAATTAAAAAAAATT-AAAAAAGTATTTTAAAAA
*
37318059 TATTTTAAAATT-AAAAAAATAAAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAA
37318086 TAAAAAAATT
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
38 16 0.17
39 24 0.25
40 35 0.37
41 14 0.15
42 6 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAGTATTTTAAAAA
Found at i:37318033 original size:16 final size:16
Alignment explanation
Indices: 37318012--37318043 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37318002 AAAAAAGTAT
37318012 TTTAAAAAATTTAAAA
1 TTTAAAAAATTTAAAA
37318028 TTTAAAAAATTTAAAA
1 TTTAAAAAATTTAAAA
37318044 AAAGTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTAAAAAATTTAAAA
Found at i:37318057 original size:11 final size:11
Alignment explanation
Indices: 37318043--37318068 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37318033 AAAATTTAAA
37318043 AAAAGTATTTT
1 AAAAGTATTTT
37318054 AAAAGTATTTT
1 AAAAGTATTTT
37318065 AAAA
1 AAAA
37318069 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:37318083 original size:9 final size:8
Alignment explanation
Indices: 37318065--37318094 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37318055 AAAGTATTTT
*
37318065 AAAATTAA
1 AAAAATAA
37318073 AAAAATAA
1 AAAAATAA
37318081 AAAAATAA
1 AAAAATAA
37318089 AAAAAT
1 AAAAAT
37318095 TTTATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (8 bp):
AAAAATAA
Found at i:37325085 original size:19 final size:19
Alignment explanation
Indices: 37325040--37325098 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
37325030 ATAAAAAAAA
* *
37325040 CAAAGTAATTTTCAAAATCT
1 CAAAATAATTTTTAAAAT-T
*
37325060 GAAAATAATTTTTAAAATT
1 CAAAATAATTTTTAAAATT
*
37325079 CAAAAT-ATTTATAGAAATT
1 CAAAATAATTTTTA-AAATT
37325098 C
1 C
37325099 TAATATTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
18 6 0.18
19 12 0.36
20 15 0.45
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.37
Consensus pattern (19 bp):
CAAAATAATTTTTAAAATT
Found at i:37325138 original size:18 final size:16
Alignment explanation
Indices: 37325105--37325136 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37325095 ATTCTAATAT
37325105 TTATATTTTTTTAAAA
1 TTATATTTTTTTAAAA
37325121 TTATATTTTTTTAAAA
1 TTATATTTTTTTAAAA
37325137 AAATATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATATTTTTTTAAAA
Done.