Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 124 of 196
Found at i:37325142 original size:16 final size:16
Alignment explanation
Indices: 37325107--37325142 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37325097 TCTAATATTT
**
37325107 ATATTTTTTTAAAATT
1 ATATTTTTTTAAAAAA
37325123 ATATTTTTTTAAAAAA
1 ATATTTTTTTAAAAAA
37325139 ATAT
1 ATAT
37325143 AAAAAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTTTTTAAAAAA
Found at i:37327303 original size:17 final size:17
Alignment explanation
Indices: 37327281--37327341 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
37327271 ATTAAATCAC
37327281 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
** *
37327298 TACATAAGTCTTTAAATCAC
1 TACATAA-T-TAAAAAT-AT
*
37327318 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
37327335 TACATAA
1 TACATAA
37327342 ATCTTGAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 15 0.44
18 5 0.15
19 6 0.18
20 8 0.24
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:37327313 original size:37 final size:37
Alignment explanation
Indices: 37327272--37327351 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
37327262 ATTAACCGAA
* *
37327272 TTAAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTAAATCACTACATAATTAAAAACATTACATAAATCT
37327309 TTAAATCACTACATAATTAAAAACATTACATAAATCT
1 TTAAATCACTACATAATTAAAAACATTACATAAATCT
*
37327346 TGAAAT
1 TTAAAT
37327352 TAACACATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.50, C:0.14, G:0.03, T:0.34
Consensus pattern (37 bp):
TTAAATCACTACATAATTAAAAACATTACATAAATCT
Found at i:37327323 original size:20 final size:18
Alignment explanation
Indices: 37327272--37327326 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
37327262 ATTAACCGAA
37327272 TTAAATCACTACATAATT
1 TTAAATCACTACATAATT
** *
37327290 AAAAAT-ATTACATAAGTCT
1 TTAAATCACTACATAA-T-T
37327309 TTAAATCACTACATAATT
1 TTAAATCACTACATAATT
37327327 AAAAACATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 8 0.29
18 6 0.21
19 6 0.21
20 8 0.29
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (18 bp):
TTAAATCACTACATAATT
Found at i:37327360 original size:37 final size:37
Alignment explanation
Indices: 37327274--37327363 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
37327264 TAACCGAATT
* * * *
37327274 AAATCACTACATAATTAAAAATATTACATAAGTCTTT
1 AAATAACTACATAATTAAAAACATTACATAAATCTTG
*
37327311 AAATCACTACATAATTAAAAACATTACATAAATCTTG
1 AAATAACTACATAATTAAAAACATTACATAAATCTTG
37327348 AAATTAAC-ACATAATT
1 AAA-TAACTACATAATT
37327364 GAAATGTAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 45 0.94
38 3 0.06
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.32
Consensus pattern (37 bp):
AAATAACTACATAATTAAAAACATTACATAAATCTTG
Found at i:37336891 original size:17 final size:18
Alignment explanation
Indices: 37336860--37336895 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
37336850 TTCACTCGTT
*
37336860 TCTTTTTCTAGCTCTTTC
1 TCTTTTTCCAGCTCTTTC
37336878 TCTTTTTCCA-CTCTTTC
1 TCTTTTTCCAGCTCTTTC
37336895 T
1 T
37336896 TTTATTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.61
Consensus pattern (18 bp):
TCTTTTTCCAGCTCTTTC
Found at i:37339555 original size:42 final size:43
Alignment explanation
Indices: 37339493--37339602 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 43
37339483 CAATTTGAGA
* *
37339493 ATTACATGTAAGACCATGTCTGGGACATTAGCATCG-TATCTG
1 ATTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATCTG
* * * * *
37339535 ATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATCGATATTTG
1 ATTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATCTG
37339578 ATTACATGTAAGACCAC-GTCTGGGA
1 ATTACATGTAAGACC-CTGTCTGGGA
37339603 TGTTGGCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 30 0.54
43 25 0.45
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
ATTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATCTG
Found at i:37339610 original size:43 final size:43
Alignment explanation
Indices: 37339440--37339611 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 43
37339430 CATAGGATTC
* * *
37339440 CGATATGTG-TTATCATGTAAGACCACGTCTAGAACGTTGGCAT
1 CGATATTTGATTA-CATGTAAGACCACGTCTGGGACGTTGGCAT
* * *
37339483 C-A-ATTTGAGAATTACATGTAAGACCATGTCTGGGACATTAGCAT
1 CGATATTT--G-ATTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
37339527 CG-TATCTGATTTCGTGTAAGACC-CTGTCTGAGACAG-TGGCAT
1 CGATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
37339569 CGATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
37339612 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
41 3 0.03
42 30 0.30
43 34 0.34
44 27 0.27
45 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:37341083 original size:43 final size:43
Alignment explanation
Indices: 37340939--37342216 Score: 632
Period size: 43 Copynumber: 30.0 Consensus size: 43
37340929 TCTTCTTTAG
* *
37340939 CCCGCACATCCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
37340982 CCCGCACATCCAAG-CACCAAGTTGCTGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
37341024 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* *
37341067 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGACT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * ** * * * *
37341110 -ACGCA-AGACCAAG-GGCCGAGGTGCTGATGGTGGCCGAGGCC
1 CCCGCACA-TCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *** * *
37341151 CCCGCACGA-CCAAGGGC-CTATTTTACCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCCAA-GCCACCAAGGTGCCGATGGTGCCCGAGGCT
** ** * *
37341194 CCCGCACGA-CCAAG-GGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * * *
37341237 CTCGCACGA-CCAAG-GGCCTAGGTTGCAGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
* ** *
37341280 CCCGCAAATCCAAG-CACCAAGGTGTTGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** *
37341322 CCCGCACGA-CCAAG-GGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
37341365 CCCGCCCAT-CATAG-CACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** * * * *
37341407 CCCTCACGA-CCAAG-GGCCTAGTTTACCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCCACCAAG-GTGCCGATGGTGCCCGAGGCT
* * * *
37341450 CCCGCACATCCCAG-CACCTAGGGGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * ***
37341492 CCCGCACGA-CCAAGGGC-CTATTTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAA-GCCACCAAGGTGCCGATGGTGCCCGAGGCT
** ** * * *
37341535 CCCGCACGA-CCAAG-GGCTTAGATTACCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * * * *
37341578 CTCGCACGA-CCAAG-GGCCTAGGTTGCCAATGGTGCGCGAGGTT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
37341621 CTCGCACATCCAAG-CACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** * * *
37341663 CCCGCGTGA-CAAAG-GGCCTAGGTTGCCGATAGTGTCCGAGGCT
1 CCCGC-ACATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
*
37341706 CCCGCACAT-CATAG-CACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * ** * * *
37341748 CCCGTACAACCAAG-GGCCTAGTTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCCACCAAG-GTGCCGATGGTGCCCGAGGCT
* * * * * *
37341791 CCCGCACACCCCAG-CACCTAGGGGCCGATGGTGGCCAAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * ***
37341833 CCCGCAC-TACCAAGGC-CTATTTTGCCGATGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
** ** ** * * * *
37341875 CATGCACGA-CCAAG-GGCTTAGTTTGCCGATAGTGCCTGAGCCT
1 CCCGCAC-ATCCAAGCCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * * * *
37341918 CTCGCACGA-CCAAG-GGCCTAGGTTGTCGATGGTGCGCGAGGTT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
37341961 CTCGCACATCCAAG-CACTAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** *
37342003 CCCGCACGA-CCAAG-GGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
37342046 CCCGCACAT-CATAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** *
37342088 CCTGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * *
37342131 CTCGCACATCCCAG-CACCGAGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
37342173 CCCGCACATCGAAG-CACCGAGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
37342215 CC
1 CC
37342217 TGCATGACCA
Statistics
Matches: 968, Mismatches: 219, Indels: 97
0.75 0.17 0.08
Matches are distributed among these distances:
41 22 0.02
42 400 0.41
43 544 0.56
44 2 0.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (43 bp):
CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:37341342 original size:85 final size:85
Alignment explanation
Indices: 37340939--37342216 Score: 1254
Period size: 85 Copynumber: 15.0 Consensus size: 85
37340929 TCTTCTTTAG
* ** *
37340939 CCCGCACATCCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AA
1 CCCGCACAT-CCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* *
37341002 GTTGCTGATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* * * * * ** *
37341024 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
*
37341088 GG-TGCCGATGGTGCCCGAGACT
63 GGTTGCCGATGGTGCCCGAGGCT
* * ** * * * * **
37341110 -ACGCA-AGACCAAGGGCCGAGGTGCTGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATT
1 CCCGCACA-TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
37341173 TTACCGATGGTGTCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
** ** * * *
37341194 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
37341258 GTTGCAGATGGTGCCCGAGGTT
64 GTTGCCGATGGTGCCCGAGGCT
* ** *
37341280 CCCGCAAATCCAAGCACCAAGGTGTTGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
37341345 TGCCGACAGTGTCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
* * * *
37341365 CCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGT
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
37341429 TTACCGATGGTGTCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * * * **
37341450 CCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
37341515 TGCCGATGGTGCCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
** ** * * * *
37341535 CCCGCACGA-CCAAGGGCTTAGATTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
37341599 GTTGCCAATGGTGCGCGAGGTT
64 GTTGCCGATGGTGCCCGAGGCT
* * ** *
37341621 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCGTGACAAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
37341686 TGCCGATAGTGTCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
* * * *
37341706 CCCGCACAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGTACAACCAAGGGCCTAGT
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
*
37341770 TTGCCGATGGTGTCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * * * * * * **
37341791 CCCGCACACCCCAGCACCTAGGGGCCGATGGTGGCCAAGGCTCCCGCACTACCAA-GGCCTATTT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
37341855 TGCCGATGGTGCCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
** ** ** * * * * *
37341875 CATGCACGA-CCAAGGGCTTAGTTTGCCGATAGTGCCTGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
37341939 GTTGTCGATGGTGCGCGAGGTT
64 GTTGCCGATGGTGCCCGAGGCT
* * *
37341961 CTCGCACATCCAAGCACTAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
37342026 TGCCGACAGTGTCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
*
37342046 CCCGCACAT-CATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGG
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
37342110 TTGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * * * * ** *
37342131 CTCGCACATCCCAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
*
37342195 -TGCCGATGGCGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
37342215 CC
1 CC
37342217 TGCATGACCA
Statistics
Matches: 980, Mismatches: 188, Indels: 51
0.80 0.15 0.04
Matches are distributed among these distances:
83 3 0.00
84 120 0.12
85 658 0.67
86 196 0.20
87 3 0.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGCCCGAGGCT
Found at i:37342170 original size:18 final size:18
Alignment explanation
Indices: 37342147--37342212 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
37342137 CATCCCAGCA
37342147 CCGAGGTGCCGATGGCGC
1 CCGAGGTGCCGATGGCGC
* **
37342165 CCGAGGCTCCCGCACATCGAAGC
1 CCGAGG-TGCCG---AT-GGCGC
37342188 ACCGAGGTGCCGATGGCGC
1 -CCGAGGTGCCGATGGCGC
37342207 CCGAGG
1 CCGAGG
37342213 CTCCTGCATG
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 12 0.33
19 7 0.19
20 2 0.06
22 2 0.06
23 7 0.19
24 6 0.17
ACGTcount: A:0.17, C:0.36, G:0.38, T:0.09
Consensus pattern (18 bp):
CCGAGGTGCCGATGGCGC
Found at i:37342364 original size:24 final size:24
Alignment explanation
Indices: 37342328--37342393 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
37342318 ATGCTACCAG
*
37342328 AACGGTTCACCGGAGCACCGACGA
1 AACGGTTCGCCGGAGCACCGACGA
* *
37342352 AACGGTTCGCCGGAGCACCGCCGG
1 AACGGTTCGCCGGAGCACCGACGA
* *
37342376 GACGGATCGCCGGAGCAC
1 AACGGTTCGCCGGAGCAC
37342394 TGCCAGGAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.23, C:0.35, G:0.35, T:0.08
Consensus pattern (24 bp):
AACGGTTCGCCGGAGCACCGACGA
Found at i:37342658 original size:42 final size:42
Alignment explanation
Indices: 37342609--37342943 Score: 256
Period size: 42 Copynumber: 7.9 Consensus size: 42
37342599 ACTTTAGCTT
* *
37342609 TGGTGCTCAAGGCTCCCGCTCATCCATA-CACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
*
37342651 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAATGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
37342693 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
37342736 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCAAAGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * ** * * * *
37342778 TGGT-CTCCGAGGCTCTC-CACAACCAAGGGCCTAGTTTTCTGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* * * * *
37342820 TGGTG-TCCAATGCTCCCGCACATCCATGTACCAAGGTACCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * *
37342862 TGGTG-TCTGAGGCTCCCACACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
37342905 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTG
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTG
37342944 ATGGAGGCTC
Statistics
Matches: 235, Mismatches: 44, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
41 11 0.05
42 141 0.60
43 76 0.32
44 7 0.03
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:37342754 original size:85 final size:84
Alignment explanation
Indices: 37342658--37342939 Score: 264
Period size: 85 Copynumber: 3.3 Consensus size: 84
37342648 CGATGGTGCT
* *
37342658 CGAGGCTCCCGCACATCCAAGCACCAATGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGATGGTGCTCGAGGCTCCC-CACAACCAAGGG
37342723 CCTAGGTTGCCGACAGTGTC
65 CCTAGGTTGCCGACAGTGTC
*
37342743 CGAGGCTCCCGCACAT-CATAGCACCAAAGTGCCGATGGT-CTCCGAGGCTCTCCACAACCAAGG
1 CGAGGCTCCCGCACATCCA-AGCACCAAAGTGCCGATGGTGCT-CGAGGCTCCCCACAACCAAGG
* * * **
37342806 GCCTAGTTTTCTGATGGTGTC
64 GCCTAGGTTGCCGACAGTGTC
* * * * * * * *
37342827 CAATGCTCCCGCACATCCATGTACCAAGGTACCGATGGTG-TCTGAGGCTCCCACACATCCAAGC
1 CGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGATGGTGCTC-GAGGCTCCC-CACAACCAAGG
** * * **
37342891 ATCAAGGTTACCGATGGTGTC
64 GCCTAGGTTGCCGACAGTGTC
* * *
37342912 TGAGGCTCCCACACATCCGAGCCACCAA
1 CGAGGCTCCCGCACATCCAAG-CACCAA
37342940 GGTGATGGAG
Statistics
Matches: 160, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
83 1 0.01
84 69 0.43
85 85 0.53
86 5 0.03
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGATGGTGCTCGAGGCTCCCCACAACCAAGGGC
CTAGGTTGCCGACAGTGTC
Found at i:37347965 original size:14 final size:14
Alignment explanation
Indices: 37347937--37347995 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
37347927 GCTTGAAGGG
*
37347937 TAGGGTTTTAGGGTT
1 TAGGG-TTTAAGGTT
37347952 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTT
* *
37347966 TAGGTTTTAAGGCT
1 TAGGGTTTAAGGTT
*
37347980 TAGGGCTTAAGGTT
1 TAGGGTTTAAGGTT
37347994 TA
1 TA
37347996 AGGCTTAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
14 33 0.87
15 5 0.13
ACGTcount: A:0.20, C:0.03, G:0.34, T:0.42
Consensus pattern (14 bp):
TAGGGTTTAAGGTT
Found at i:37347972 original size:6 final size:7
Alignment explanation
Indices: 37347937--37347995 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
37347927 GCTTGAAGGG
37347937 TAGGGTTT
1 TAGGG-TT
37347945 TAGGGTT
1 TAGGGTT
37347952 TAGGGTT
1 TAGGGTT
*
37347959 TAAGGTT
1 TAGGGTT
*
37347966 TAGGTTT
1 TAGGGTT
* *
37347973 TAAGGCT
1 TAGGGTT
*
37347980 TAGGGCT
1 TAGGGTT
*
37347987 TAAGGTT
1 TAGGGTT
37347994 TA
1 TA
37347996 AGGCTTAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
7 37 0.88
8 5 0.12
ACGTcount: A:0.20, C:0.03, G:0.34, T:0.42
Consensus pattern (7 bp):
TAGGGTT
Found at i:37347972 original size:28 final size:28
Alignment explanation
Indices: 37347940--37347995 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
37347930 TGAAGGGTAG
* * *
37347940 GGTTTTAGGGTTTAGGGTTTAAGGTTTA
1 GGTTTTAAGGCTTAGGGCTTAAGGTTTA
37347968 GGTTTTAAGGCTTAGGGCTTAAGGTTTA
1 GGTTTTAAGGCTTAGGGCTTAAGGTTTA
37347996 AGGCTTAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.20, C:0.04, G:0.34, T:0.43
Consensus pattern (28 bp):
GGTTTTAAGGCTTAGGGCTTAAGGTTTA
Found at i:37347996 original size:7 final size:7
Alignment explanation
Indices: 37347943--37348008 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
37347933 AGGGTAGGGT
*
37347943 TTTAGGG
1 TTTAAGG
*
37347950 TTTAGGG
1 TTTAAGG
37347957 TTTAAGG
1 TTTAAGG
37347964 TTT-AGG
1 TTTAAGG
37347970 TTTTAAGG
1 -TTTAAGG
* *
37347978 CTTAGGG
1 TTTAAGG
*
37347985 CTTAAGG
1 TTTAAGG
37347992 TTTAAGG
1 TTTAAGG
* *
37347999 CTTAAAG
1 TTTAAGG
37348006 TTT
1 TTT
37348009 TTAGGGTTCA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
6 3 0.06
7 43 0.88
8 3 0.06
ACGTcount: A:0.23, C:0.05, G:0.30, T:0.42
Consensus pattern (7 bp):
TTTAAGG
Found at i:37348054 original size:7 final size:7
Alignment explanation
Indices: 37348044--37348201 Score: 104
Period size: 7 Copynumber: 22.9 Consensus size: 7
37348034 GGCTTAAAGT
37348044 TCAGGGC
1 TCAGGGC
37348051 TCAGGGC
1 TCAGGGC
*
37348058 TCAAGGC
1 TCAGGGC
*
37348065 TCGGGGC
1 TCAGGGC
*
37348072 TCGGGGC
1 TCAGGGC
*
37348079 TCAAGGC
1 TCAGGGC
37348086 TCAGGGC
1 TCAGGGC
*
37348093 TCAAGGC
1 TCAGGGC
37348100 TCAGGGC
1 TCAGGGC
* *
37348107 TGAGGGT
1 TCAGGGC
*
37348114 TTAGGG-
1 TCAGGGC
* *
37348120 TCTGGGG
1 TCAGGGC
* *
37348127 TCTGGGG
1 TCAGGGC
*
37348134 TCAAGGC
1 TCAGGGC
*
37348141 TCAAGGC
1 TCAGGGC
* *
37348148 TGAGGGT
1 TCAGGGC
*
37348155 TTAGGG-
1 TCAGGGC
* *
37348161 TCTGGGG
1 TCAGGGC
*
37348168 TCAAGGC
1 TCAGGGC
37348175 TCAGGGC
1 TCAGGGC
*
37348182 TTAGGGC
1 TCAGGGC
*
37348189 TCGGGGC
1 TCAGGGC
37348196 TCAGGG
1 TCAGGG
37348202 TTGAGGGTTG
Statistics
Matches: 119, Mismatches: 30, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
6 8 0.07
7 111 0.93
ACGTcount: A:0.15, C:0.21, G:0.45, T:0.20
Consensus pattern (7 bp):
TCAGGGC
Found at i:37348058 original size:21 final size:21
Alignment explanation
Indices: 37348023--37348112 Score: 90
Period size: 21 Copynumber: 4.3 Consensus size: 21
37348013 GGTTCAGGGT
* * * *
37348023 TCAGGGCTTAAGGCTTAAAGT
1 TCAGGGCTCAAGGCTCAAGGC
*
37348044 TCAGGGCTCAGGGCTCAAGGC
1 TCAGGGCTCAAGGCTCAAGGC
* **
37348065 TCGGGGCTCGGGGCTCAAGGC
1 TCAGGGCTCAAGGCTCAAGGC
*
37348086 TCAGGGCTCAAGGCTCAGGGC
1 TCAGGGCTCAAGGCTCAAGGC
*
37348107 TGAGGG
1 TCAGGG
37348113 TTTAGGGTCT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.19, C:0.23, G:0.40, T:0.18
Consensus pattern (21 bp):
TCAGGGCTCAAGGCTCAAGGC
Found at i:37348162 original size:27 final size:27
Alignment explanation
Indices: 37348131--37348216 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
37348121 CTGGGGTCTG
*
37348131 GGGTCAAGGCTCAAGGCTGAGGGTTTA
1 GGGTCAGGGCTCAAGGCTGAGGGTTTA
* * * *
37348158 GGGTCTGGGGTCAAGGCTCAGGGCTTA
1 GGGTCAGGGCTCAAGGCTGAGGGTTTA
* * * *
37348185 GGGCTCGGGGCTCAGGGTTGAGGGTTGA
1 GGG-TCAGGGCTCAAGGCTGAGGGTTTA
37348213 GGGT
1 GGGT
37348217 TTAGGGTTTA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 26 0.57
28 20 0.43
ACGTcount: A:0.15, C:0.15, G:0.48, T:0.22
Consensus pattern (27 bp):
GGGTCAGGGCTCAAGGCTGAGGGTTTA
Found at i:37348202 original size:41 final size:41
Alignment explanation
Indices: 37348044--37348202 Score: 133
Period size: 41 Copynumber: 3.9 Consensus size: 41
37348034 GGCTTAAAGT
* * ** *
37348044 TCAGGGCTCAGGGCTCAAGGCTCG-GGGCTCGGGGCTCAAGGC
1 TCAGGGCTCAAGGCTCAAGGCT-GAGGGCTCAGGG-TCTGGGG
* * *
37348086 TCAGGGCTCAAGGCTCAGGGCTGAGGGTTTAGGGTCTGGGG
1 TCAGGGCTCAAGGCTCAAGGCTGAGGGCTCAGGGTCTGGGG
* * * *
37348127 TCTGGGGTCAAGGCTCAAGGCTGAGGGTTTAGGGTCTGGGG
1 TCAGGGCTCAAGGCTCAAGGCTGAGGGCTCAGGGTCTGGGG
* * * *
37348168 TCAAGGCTCAGGGCTTAGGGCTCG-GGGCTCAGGGT
1 TCAGGGCTCAAGGCTCAAGGCT-GAGGGCTCAGGGT
37348203 TGAGGGTTGA
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
41 68 0.71
42 28 0.29
ACGTcount: A:0.14, C:0.21, G:0.45, T:0.20
Consensus pattern (41 bp):
TCAGGGCTCAAGGCTCAAGGCTGAGGGCTCAGGGTCTGGGG
Found at i:37348252 original size:20 final size:20
Alignment explanation
Indices: 37348227--37348277 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
37348217 TTAGGGTTTA
*
37348227 GGGTCTATGGTTTTAGGTCT
1 GGGTCTAGGGTTTTAGGTCT
37348247 GGGTCTAGGGTTTTAGGTCT
1 GGGTCTAGGGTTTTAGGTCT
*
37348267 GGGTCTGGGGT
1 GGGTCTAGGGT
37348278 CAAGGCTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.08, C:0.10, G:0.43, T:0.39
Consensus pattern (20 bp):
GGGTCTAGGGTTTTAGGTCT
Found at i:37348299 original size:21 final size:21
Alignment explanation
Indices: 37348273--37348317 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
37348263 GTCTGGGTCT
37348273 GGGGTCAAGGCTCAGAGCTCA
1 GGGGTCAAGGCTCAGAGCTCA
37348294 GGGGTCAAGGCTCAGAGCTCA
1 GGGGTCAAGGCTCAGAGCTCA
37348315 GGG
1 GGG
37348318 CTCGGGGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.42, T:0.13
Consensus pattern (21 bp):
GGGGTCAAGGCTCAGAGCTCA
Found at i:37348325 original size:7 final size:7
Alignment explanation
Indices: 37348281--37348338 Score: 62
Period size: 7 Copynumber: 8.3 Consensus size: 7
37348271 CTGGGGTCAA
37348281 GGCTCAG
1 GGCTCAG
*
37348288 AGCTCAG
1 GGCTCAG
* *
37348295 GGGTCAA
1 GGCTCAG
37348302 GGCTCAG
1 GGCTCAG
*
37348309 AGCTCAG
1 GGCTCAG
*
37348316 GGCTCGG
1 GGCTCAG
37348323 GGCTCAG
1 GGCTCAG
*
37348330 GGCTGAG
1 GGCTCAG
37348337 GG
1 GG
37348339 TTTAGGGTTT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.17, C:0.24, G:0.45, T:0.14
Consensus pattern (7 bp):
GGCTCAG
Found at i:37348326 original size:21 final size:21
Alignment explanation
Indices: 37348277--37348338 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
37348267 GGGTCTGGGG
*
37348277 TCAAGGCTCAGAGCTCAGGGG
1 TCAAGGCTCAGAGCTCAGGGC
37348298 TCAAGGCTCAGAGCTCAGGGC
1 TCAAGGCTCAGAGCTCAGGGC
** * *
37348319 TCGGGGCTCAGGGCTGAGGG
1 TCAAGGCTCAGAGCTCAGGG
37348339 TTTAGGGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.19, C:0.24, G:0.42, T:0.15
Consensus pattern (21 bp):
TCAAGGCTCAGAGCTCAGGGC
Found at i:37348345 original size:7 final size:7
Alignment explanation
Indices: 37348335--37348404 Score: 61
Period size: 7 Copynumber: 10.0 Consensus size: 7
37348325 CTCAGGGCTG
37348335 AGGGTTT
1 AGGGTTT
37348342 AGGGTTT
1 AGGGTTT
*
37348349 ATGGTTT
1 AGGGTTT
*
37348356 AGGGTCT
1 AGGGTTT
*
37348363 GGGGTTT
1 AGGGTTT
* *
37348370 GGGGTCT
1 AGGGTTT
37348377 AGGGTTT
1 AGGGTTT
37348384 -GAGGTTT
1 AG-GGTTT
*
37348391 GGGGTTT
1 AGGGTTT
*
37348398 AAGGTTT
1 AGGGTTT
37348405 GTCACAACAT
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
6 1 0.02
7 49 0.96
8 1 0.02
ACGTcount: A:0.11, C:0.03, G:0.44, T:0.41
Consensus pattern (7 bp):
AGGGTTT
Found at i:37348345 original size:14 final size:15
Alignment explanation
Indices: 37348328--37348383 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 15
37348318 CTCGGGGCTC
37348328 AGGG-CTGAGGGTTT
1 AGGGTCTGAGGGTTT
* *
37348342 AGGGT-TTATGGTTT
1 AGGGTCTGAGGGTTT
37348356 AGGGTCTG-GGGTTT
1 AGGGTCTGAGGGTTT
*
37348370 GGGGTCT-AGGGTTT
1 AGGGTCTGAGGGTTT
37348384 GAGGTTTGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 33 0.97
15 1 0.03
ACGTcount: A:0.11, C:0.05, G:0.46, T:0.38
Consensus pattern (15 bp):
AGGGTCTGAGGGTTT
Found at i:37348403 original size:21 final size:21
Alignment explanation
Indices: 37348351--37348405 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
37348341 TAGGGTTTAT
* *
37348351 GGTTTAGGGTCTGGGGTTTGG
1 GGTTTAGGGTTTGAGGTTTGG
*
37348372 GGTCTAGGGTTTGAGGTTTGG
1 GGTTTAGGGTTTGAGGTTTGG
*
37348393 GGTTTAAGGTTTG
1 GGTTTAGGGTTTG
37348406 TCACAACATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.09, C:0.04, G:0.47, T:0.40
Consensus pattern (21 bp):
GGTTTAGGGTTTGAGGTTTGG
Found at i:37349123 original size:15 final size:15
Alignment explanation
Indices: 37349103--37349164 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
37349093 TCCACCGATG
37349103 TTTATTTTTATTTAT
1 TTTATTTTTATTTAT
37349118 TTTA-TTTTATTTTAT
1 TTTATTTTTA-TTTAT
37349133 TTTATTTATT-TTTAT
1 TTTATTT-TTATTTAT
**
37349148 AGATATTTTTATTTAT
1 -TTTATTTTTATTTAT
37349164 T
1 T
37349165 ATTGTTATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.13
15 20 0.51
16 12 0.31
17 2 0.05
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTATTTTTATTTAT
Found at i:37349162 original size:4 final size:5
Alignment explanation
Indices: 37349103--37349144 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
37349093 TCCACCGATG
37349103 TTTAT TTT-T ATTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TTT
1 TTTAT TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
37349145 TATAGATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 5 0.15
5 28 0.82
6 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:37367401 original size:85 final size:84
Alignment explanation
Indices: 37367220--37367899 Score: 392
Period size: 85 Copynumber: 8.0 Consensus size: 84
37367210 CCAGGCACCA
* * *
37367220 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGTTGGTGTCCGAGGC
1 AGGTGCCGAT-GCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGC
* **
37367285 TCCCGCAC-ATCCTAGCCACCG
65 TCCCGCACGA-CCAAG-GGCCG
* * *
37367306 AGGTGCCGATGCTGCCCGAGGCTCCCGTACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGTTGCCGATGGTGCCCGAGGC
*
37367371 TCCCGCACGACCAAGGGTCG
65 TCCCGCACGACCAAGGGCCG
* * * * ** **
37367391 AGGTGTCGATGGTGGCCGAGGC-CTCCGCACGA-CCTAGGGCCTATTTTGCCGATGGTGCCCGAG
1 AGGTGCCGATGCTGCCCGAGGCTC-CCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAG
**
37367454 GCTCCCGCACGACCAAGGGCTT
63 GCTCCCGCACGACCAAGGGCCG
* * * ** * * * *
37367476 AGTTTGCCGATAG-TGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGCTGTCGATGGTGCACGA
1 AG-GTGCCGAT-GCTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGA
* ** *
37367539 GGTTCCCGCAC-ATCCAAGCACCA
62 GGCTCCCGCACGA-CCAAGGGCCG
* ** ** * * * *
37367562 AGGTGCCGATGGTGCTTGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATAGTGTCTGAGG
1 AGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGG
* **
37367626 CTCCCGCAC-ATCATAGCACCG
64 CTCCCGCACGACCA-AGGGCCG
* * ** *
37367647 AGGTGCCAATGGTGCCCGAGGCTCCCGCACGA-CCAAGGTCCTAGGTTGCCGATGGTGCCCGAGG
1 AGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGG
* **
37367711 CTCCCGCAC-ATCGAAGCACCG
64 CTCCCGCACGA-CCAAGGGCCG
* * * ** * * * *
37367732 AGGTACCGATGGCT-TCCGAGGCTCCCGCACATCGAAATACCGAGGTGTCGATGGCGCCCGAGGC
1 AGGTGCCGAT-GCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGC
* * ****
37367796 TCCTGCATGACCAAGGAATT
65 TCCCGCACGACCAAGGGCCG
* * * * * * * * * * *
37367816 AGTTTGCCGATGGTGTCTGGGGCTCCTGCACATCCTAGCACCGAGGTACCGATGGTGCTCGAGGC
1 AG-GTGCCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGC
37367881 TCCCGCACGACCAAGGGCC
65 TCCCGCACGACCAAGGGCC
37367900 TATACTACCG
Statistics
Matches: 476, Mismatches: 101, Indels: 35
0.78 0.17 0.06
Matches are distributed among these distances:
84 40 0.08
85 320 0.67
86 113 0.24
87 3 0.01
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (84 bp):
AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCG
Found at i:37367441 original size:128 final size:126
Alignment explanation
Indices: 37367200--37367896 Score: 555
Period size: 128 Copynumber: 5.4 Consensus size: 126
37367190 TCTTCTTTAG
* * *
37367200 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAG
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGGACCGAG
* * * * * * * *
37367265 TTGCCGTTGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCACCGAGG-TGCCGATGCTGCCCGAGGC
63 GTGTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GACCTAGGTTGCCGATGGTGCCCGAGGC
37367328 T
126 T
* * **
37367329 CCCGTACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTCGAGG
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGACCGAGG
* * * **
37367394 TGTCGATGGTGGCCGAGGC-CTCCGCACGACCTAGGGCCTATTTTGCCGATGGTGCCCGAGGCT
64 TGTCGATGGTGCCCGAGGCTC-CCGCACGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
** ** * * * * * *
37367457 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATAGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGACCGAG
* * * * **
37367521 GCTGTCGATGGTGCACGAGGTTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTTGAGGC
63 G-TGTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGACCTAGGTTGCCGATGGTGCCCGAGGC
37367584 T
126 T
** * * * * * *
37367585 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATAGTGTCTGAGGCTCCCGCACATCATAGCACCGAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGGACCGAG
* * *
37367649 GTGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCGATGGTGCCCGAGGCT
63 GTGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * **
37367713 CCCGCACATCGAAGCACCGAGGTACCGATGGCT-TCCGAGGCTCCCGCACATCGAAATACCGAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGG-TGCCCGAGGCTCCCGCACA-CCAAGGACCGAGG
* * * ** * * * *
37367777 TGTCGATGGCGCCCGAGGCTCCTGCATGACCAAGGAATTAGTTTGCCGATGGTGTCTGGGGCT
64 TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
37367840 CCTGCACATCCTAGCACCGAGGTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGG
37367897 GCCTATACTA
Statistics
Matches: 459, Mismatches: 90, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
126 1 0.00
127 171 0.37
128 231 0.50
129 55 0.12
130 1 0.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.17
Consensus pattern (126 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGACCGAGGTG
TCGATGGTGCCCGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
Found at i:37367765 original size:42 final size:42
Alignment explanation
Indices: 37367200--37367888 Score: 489
Period size: 43 Copynumber: 16.2 Consensus size: 42
37367190 TCTTCTTTAG
* *
37367200 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCACCGAGGTGCCGAT-GGTGCCCGAGGCT
* * * *
37367244 CCCGCACATCCAAGCACCAAGTTGCCGTTGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
* *
37367286 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCT
* * *
37367329 CCCGTACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCT
*** * *
37367372 CCCGCACGA-CCAAGGGTCGAGGTGTCGATGGTGGCCGAGGC-
1 CCCGCAC-ATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
* ** * **
37367413 CTCCGCACGA-CCTAGGGCCTATTTTGCCGATGGTGCCCGAGGCT
1 C-CCGCAC-ATCCAAGCACCGA-GGTGCCGATGGTGCCCGAGGCT
** ** * * *
37367457 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATAGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCT
* ** * * * *
37367500 CTCGCACGA-CCAAGGGCCTAGGCTGTCGATGGTGCACGAGGTT
1 CCCGCAC-ATCCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCT
* **
37367543 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTTGAGGCT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
** * * * *
37367585 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATAGTGTCTGAGGCT
1 CCCGCAC-ATCCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCT
*
37367628 CCCGCACAT-CATAGCACCGAGGTGCCAATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCT
** *
37367670 CCCGCACGA-CCAAGGTCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCT
* * *
37367713 CCCGCACATCGAAGCACCGAGGTACCGATGGCT-TCCGAGGCT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGG-TGCCCGAGGCT
* ** * *
37367755 CCCGCACATCGAAATACCGAGGTGTCGATGGCGCCCGAGGCT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
* * * *** * * * *
37367797 CCTGCATGA-CCAAGGAATTAGTTTGCCGATGGTGTCTGGGGCT
1 CCCGCA-CATCCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCT
* * * *
37367840 CCTGCACATCCTAGCACCGAGGTACCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
37367882 CCCGCAC
1 CCCGCAC
37367889 GACCAAGGGC
Statistics
Matches: 518, Mismatches: 106, Indels: 44
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.00
42 214 0.41
43 292 0.56
44 11 0.02
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.17
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
Found at i:37373213 original size:42 final size:42
Alignment explanation
Indices: 37373165--37373499 Score: 261
Period size: 42 Copynumber: 7.9 Consensus size: 42
37373155 ACTTTAGCTT
* * *
37373165 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * *
37373207 TGGTGCTCGAGGCTCCCGTACATCGAAGCACCAAGGTGACGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* ** *
37373249 TGGTGCTCGAGGCTCCAGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
37373292 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* ** * *
37373334 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* * * *
37373376 TCGTG-TCTGATGCTCCCGCGCATCCATGCACCAAGGTGCCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * * * *
37373418 TGGTGCTCGTGGCTCCCGCACATCCAAGAATCATGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* * *
37373461 TGGTG-TCTGAGGCTCTCACACATCCGAGCCACCAAGGTG
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTG
37373500 ATGGAGGCTC
Statistics
Matches: 226, Mismatches: 52, Indels: 29
0.74 0.17 0.09
Matches are distributed among these distances:
41 11 0.05
42 141 0.62
43 69 0.31
44 5 0.02
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:37373394 original size:84 final size:84
Alignment explanation
Indices: 37373201--37373499 Score: 286
Period size: 85 Copynumber: 3.5 Consensus size: 84
37373191 TGCACCAAGG
* * *
37373201 TGCCGATGGTG-CTCGAGGCTCCCGTACATCGA-AGCACCAAGGTGACGATGGTGCTCGAGGCTC
1 TGCCGATCGTGTCT-GAGGCTCCCGCACATC-ATAGCACCAAGGTGCCGATGGTGCTCGAGGCTC
* *
37373264 CAGCACGACCAAGGGCCTAGGT
64 C-CCACAACCAAGGGCCTAGGT
* *
37373286 TGCCGA-CAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTC
1 TGCCGATC-GTGTCTGAGGCTCCCGCACATCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTC
*
37373349 CCCACAACCAAGGGCCTAGTT
64 CCCACAACCAAGGGCCTAGGT
* * *
37373370 TGCCGATCGTGTCTGATGCTCCCGCGCATCCAT-GCACCAAGGTGCCGATGGTGCTCGTGGCTCC
1 TGCCGATCGTGTCTGAGGCTCCCGCACAT-CATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
* ***
37373434 CGCACATCCAAGAATC-ATGGT
65 C-CACAACCAAGGGCCTA-GGT
* * * * **
37373455 TACCGATGGTGTCTGAGGCTCTCACACATCCGAGCCACCAAGGTG
1 TGCCGATCGTGTCTGAGGCTCCCGCACATCATAG-CACCAAGGTG
37373500 ATGGAGGCTC
Statistics
Matches: 177, Mismatches: 26, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
84 73 0.41
85 93 0.53
86 11 0.06
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (84 bp):
TGCCGATCGTGTCTGAGGCTCCCGCACATCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
CACAACCAAGGGCCTAGGT
Found at i:37377417 original size:85 final size:84
Alignment explanation
Indices: 37377325--37377486 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
37377315 CGATGGTGCT
** * *
37377325 CGAGGCTCCCGCACATCCA-AGCACCAAGGTGACGATGGTGCT-CGAGGCTCCTGTACGACCAAG
1 CGAGGCTCCCGCACAT-CATAGCACCAAGGTGACGATGGT-CTCCGAGGCTCC-CCACAACCAAA
37377388 GGCCTAGGTTGCCGACAGTGTC
63 GGCCTAGGTTGCCGACAGTGTC
* *
37377410 CGAGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTCTCCGAGGCTCCCCACAACCAAAGGC
1 CGAGGCTCCCGCACATCATAGCACCAAGGTGACGATGGTCTCCGAGGCTCCCCACAACCAAAGGC
*
37377475 CTAGTTTGCCGA
66 CTAGGTTGCCGA
37377487 TGGCGCCCGA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 25 0.37
85 43 0.63
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCATAGCACCAAGGTGACGATGGTCTCCGAGGCTCCCCACAACCAAAGGC
CTAGGTTGCCGACAGTGTC
Found at i:37377485 original size:42 final size:42
Alignment explanation
Indices: 37377439--37377545 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 42
37377429 AGCACCGAGG
37377439 TGCCGATGGTCTCCGAGGCTCCCCACAACCAAAGGCCTAGTT
1 TGCCGATGGTCTCCGAGGCTCCCCACAACCAAAGGCCTAGTT
* ** ** * *
37377481 TGCCGATGG-CGCCCGAGGCTCGTGCATGACCAAGGGCTTAGTT
1 TGCCGATGGTC-TCCGAGGCTC-CCCACAACCAAAGGCCTAGTT
* *
37377524 TGCCGATGGTGTCCGGGGCTCC
1 TGCCGATGGTCTCCGAGGCTCC
37377546 TGCACATCCT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.02
42 18 0.35
43 32 0.63
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (42 bp):
TGCCGATGGTCTCCGAGGCTCCCCACAACCAAAGGCCTAGTT
Found at i:37377512 original size:127 final size:128
Alignment explanation
Indices: 37377285--37377605 Score: 384
Period size: 127 Copynumber: 2.5 Consensus size: 128
37377275 TTGGTGCTTA
* * *
37377285 AGGCTCCCGCTCATCCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACATCC-AAGC
1 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTGCTCCGAGGCTCCCGCACAACCAAAG-
* * * * *
37377347 ACCAAGGTGACGATGGTGCTCGAGGCTCCTGTACGACCAAGGGCCTAGGTTGCCGACAGTGTCCG
64 GCCTAGGTGACGATGGCGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCG
37377412 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTCCC-CACAACCAAAGGC
1 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTGCTCCGAGGCTCCCGCACAACCAAAGGC
* * * * * * **
37377475 CTAGTTTGCCGATGGCGCCCGAGGCTCGTGCATGACCAAGGGCTTAGTTTGCCGATGGTGTCCG
66 CTAG-GTGACGATGGCGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCG
* * * * *
37377539 GGGCTCCTGCACATCCTAGCACCGAGGTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGC
1 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTGCTCCGAGGCTCCCGCACAACCAAAGGC
37377603 CTA
66 CTA
37377606 TGCTACCGGA
Statistics
Matches: 167, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
126 15 0.09
127 137 0.82
128 15 0.09
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.17
Consensus pattern (128 bp):
AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTGCTCCGAGGCTCCCGCACAACCAAAGGC
CTAGGTGACGATGGCGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCG
Found at i:37377544 original size:43 final size:43
Alignment explanation
Indices: 37377466--37377549 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
37377456 GCTCCCCACA
*
37377466 ACCAAAGGCCTAGTTTGCCGATGGCGCCCGAGGCTCGTGCATG
1 ACCAAAGGCCTAGTTTGCCGATGGCGCCCGAGGCTCCTGCATG
* * * * *
37377509 ACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCA
1 ACCAAAGGCCTAGTTTGCCGATGGCGCCCGAGGCTCCTGCA
37377550 CATCCTAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (43 bp):
ACCAAAGGCCTAGTTTGCCGATGGCGCCCGAGGCTCCTGCATG
Found at i:37377575 original size:42 final size:42
Alignment explanation
Indices: 37377285--37377592 Score: 216
Period size: 42 Copynumber: 7.3 Consensus size: 42
37377275 TTGGTGCTTA
* * *
37377285 AGGCTCCCGCTCATCCATGCACCAAGGTGCCGATGGTG-CTCG
1 AGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGTC-CG
* *
37377327 AGGCTCCCGCACATCCAAGCACCAAGGTGACGATGGTG-CTCG
1 AGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGTC-CG
* * ** **
37377369 AGGCTCCTGTACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCG
1 AGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGTCCG
* *
37377412 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTCTCCG
1 AGGCTCCCGCACATCCA-AGCACCTAGGTGCCGATGGTGTCCG
* * * * *
37377454 AGGCTCCC-CACAACCAAAG-GCCTAGTTTGCCGATGGCGCCCG
1 AGGCTCCCGCACATCC-AAGCACCTAG-GTGCCGATGGTGTCCG
** * ** * *
37377496 AGGCTCGTGCATGA-CCAAGGGCTTAGTTTGCCGATGGTGTCCG
1 AGGCTCCCGCA-CATCCAAGCACCTAG-GTGCCGATGGTGTCCG
* * * * *
37377539 GGGCTCCTGCACATCCTAGCACCGAGGTGCCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGTCCG
37377581 AGGCTCCCGCAC
1 AGGCTCCCGCAC
37377593 GACCAAGGGC
Statistics
Matches: 210, Mismatches: 44, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
41 8 0.04
42 131 0.62
43 69 0.33
44 2 0.01
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.18
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGTCCG
Found at i:37377944 original size:42 final size:42
Alignment explanation
Indices: 37377896--37378188 Score: 249
Period size: 42 Copynumber: 6.9 Consensus size: 42
37377886 AATTTATCTT
* * *
37377896 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
37377938 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAAGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGA
** *
37377981 CAGTG-TCTGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* ** * *
37378023 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* * *
37378065 TGGTG-TCCGATGCTCCCGCACATCTATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * *
37378107 TGGTGCTCGAGGCTCCCGCATATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
37378150 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTG
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTG
37378189 ATGGAGGCTC
Statistics
Matches: 198, Mismatches: 38, Indels: 29
0.75 0.14 0.11
Matches are distributed among these distances:
41 10 0.05
42 110 0.56
43 71 0.36
44 7 0.04
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:37378084 original size:84 final size:85
Alignment explanation
Indices: 37377905--37378126 Score: 310
Period size: 84 Copynumber: 2.6 Consensus size: 85
37377895 TTGGTGCTCA
* *
37377905 AGGCTCCCGCTCATCCAT-GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGC
1 AGGCTCCCGCACAT-CATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGC
*
37377969 CTAAGTTGCCGACAGTGTCTG
65 CTAAGTTGCCGACAGTGTCCG
*
37377990 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTCCC-CACAACCAAGGGC
1 AGGCTCCCGCACATCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACAACCAAGGGC
**
37378053 CT-AGTTTGCCGATGGTGTCCG
65 CTAAG-TTGCCGACAGTGTCCG
*
37378074 ATGCTCCCGCACATC-TATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCA
1 AGGCTCCCGCACATCATA-GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCA
37378127 TATCCAAGCA
Statistics
Matches: 123, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
83 4 0.03
84 74 0.60
85 45 0.37
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (85 bp):
AGGCTCCCGCACATCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGCC
TAAGTTGCCGACAGTGTCCG
Found at i:37378173 original size:85 final size:83
Alignment explanation
Indices: 37377905--37378173 Score: 294
Period size: 85 Copynumber: 3.2 Consensus size: 83
37377895 TTGGTGCTCA
* *
37377905 AGGCTCCCGCTCATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
1 AGGCTCCCGCACAT-CATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-ACCAA--GCA
**
37377970 T-AA-GTTGCCGACAGTGTCTG
62 TCAAGGTTGCCGATGGTGTCTG
* ***
37377990 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTCCC-CACAACCAAGGGC
1 AGGCTCCCGCACATCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCAC-ACCAAGCAT
* * *
37378053 CTAGTTTGCCGATGGTGTCCG
63 CAAGGTTGCCGATGGTGTCTG
* *
37378074 ATGCTCCCGCACATCTATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCATATCCAAGCATC
1 AGGCTCCCGCACATC-ATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA-CCAAGCATC
*
37378139 AAGGTTACCGATGGTGTCTG
64 AAGGTTGCCGATGGTGTCTG
*
37378159 AGGCTCCCACACATC
1 AGGCTCCCGCACATC
37378174 CGAGCCACCA
Statistics
Matches: 153, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 69 0.45
85 82 0.54
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (83 bp):
AGGCTCCCGCACATCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACACCAAGCATCAA
GGTTGCCGATGGTGTCTG
Found at i:37379391 original size:36 final size:36
Alignment explanation
Indices: 37379345--37379413 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
37379335 CAAAGGCTAC
37379345 AATTAAAAGCTGTATACAATTACAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTACAACTCTAAGACAT
* *
37379381 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTACAACTCTAAGA
37379414 TTAAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTACAACTCTAAGACAT
Found at i:37379403 original size:17 final size:17
Alignment explanation
Indices: 37379342--37379405 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
37379332 CAACAAAGGC
*
37379342 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
* *
37379359 TACAATTACAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
37379376 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
37379395 TACAATTAGAA
1 TACAATTAGAA
37379406 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.57
19 10 0.27
20 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:37385146 original size:43 final size:42
Alignment explanation
Indices: 37385053--37385729 Score: 460
Period size: 43 Copynumber: 15.9 Consensus size: 42
37385043 CCAGACACTA
* *
37385053 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCA
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * * *
37385096 AGTTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAG-CACCT
* * * *
37385139 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAG-CACCT
* * * * ** *
37385182 AGGTACCGATGGTGCCAGAGGCTCCCTCACGACCAAGGGCCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * **
37385224 AGGTGCCGATGGTGACCGAGGCCCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
** * ** *
37385266 ATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * * **
37385309 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * * *
37385352 AGGTTGCAGATGGTGCCCGAGGTTCCCGCACATCCATGCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * **
37385395 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * * * * *
37385437 AGGTTGTCGATAGTGTCTGAGGCTCCCGCCCAT-CATAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGTCCA-AGCACCT
* * * * *
37385480 AGGTGCCGGTGGTGTCCAAGGCTCCCGTACATTCC-AGCACCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-GTCCAAGCACCT
* * * * **
37385522 AGGGGCCGATGGTGGCCGAGGCTCCCGCATGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
** * ** *
37385564 ATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
** * * * * **
37385607 AAATTGTCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 -AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
* * * *
37385650 AGGTTGCCGATGGTGCGCGAGG-TCCTCGCACATCCAACCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCC-CGCACGTCCAAGCACCT
* * *
37385693 AGGTGACGATGGTGCCCGAGGCTTCCGCACGACCAAG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAG
37385730 GTGCCGACAA
Statistics
Matches: 505, Mismatches: 115, Indels: 29
0.78 0.18 0.04
Matches are distributed among these distances:
41 2 0.00
42 181 0.36
43 320 0.63
44 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (42 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGTCCAAGCACCT
Found at i:37385229 original size:85 final size:85
Alignment explanation
Indices: 37385053--37385729 Score: 351
Period size: 85 Copynumber: 7.9 Consensus size: 85
37385043 CCAGACACTA
* *
37385053 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGTCCGAGGC
* *
37385118 TCCCGCACCTCCTAGCCACCG
65 TCCCGCACCACCAAGCCACCG
* *
37385139 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATGGTG-CCAGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTACCGATGGTGTCC-GAGG
* * **
37385203 CTCCCTCACGACCAAG-GGCCG
64 CTCCCGCACCACCAAGCCACCG
* * ** *** * *
37385224 AGGTGCCGATGGTGACCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTACCGATGGTGTCCGAGG
* ** **
37385288 CTCCCGCACGACCAAG-GGCTT
64 CTCCCGCACCACCAAGCCACCG
* * * ** * * * *
37385309 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCAGATGGTGCCCGAG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGTGTCCGAG
* * *
37385373 GTTCCCGCA-CATCCATG-CACCA
63 GCTCCCGCACCA-CCAAGCCACCG
* * ** * ** * *
37385395 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGTCGATAGTGTCTGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGTGTCCGAGG
*
37385459 CTCCCGC-CCATCATAG-CACCG
64 CTCCCGCACCACCA-AGCCACCG
* * * * * ** *
37385480 AGGTGCCGGTGGTGTCCAAGGCTCCCGTACATTCC-AGCACCTAGGGGCCGATGGTGGCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACA-TCCAAGCACCAAGGTACCGATGGTGTCCGAGGC
** ** *
37385544 TCCCGCATGACCAAG-GGCCT
65 TCCCGCACCACCAAGCCACCG
** ** * ** ** *
37385564 ATTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAAATTGTCGATGGTGCCCGAG
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCAC-CAAGGTACCGATGGTGTCCGAG
* * * ** *
37385628 CCTCTCGCACGACCAAG-GGCCT
63 GCTCCCGCACCACCAAGCCACCG
* * *
37385650 AGGTTGCCGATGGTGCGCGAGG-TCCTCGCACATCCAACCACCAAGGTGA-CGATGGTGCCCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCC-CGCACATCCAAGCACCAAGGT-ACCGATGGTGTCCGAG
* *
37385713 GCTTCCGCACGACCAAG
63 GCTCCCGCACCACCAAG
37385730 GTGCCGACAA
Statistics
Matches: 466, Mismatches: 104, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
84 32 0.07
85 258 0.55
86 176 0.38
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (85 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGTCCGAGGCT
CCCGCACCACCAAGCCACCG
Found at i:37385542 original size:127 final size:128
Alignment explanation
Indices: 37385056--37385601 Score: 403
Period size: 128 Copynumber: 4.3 Consensus size: 128
37385046 GACACTAAGG
* * * *
37385056 TGCCGATGGGTGCCCGAGGCTCCCGCA-CATCCAAGCACC-AAGTTGCCGATGGTGTCCGAGGCT
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACCA-CCAAGCACCGAGGTTGCAGATGGTGCCCAAGGCT
* * * * * * ** *
37385119 CCCGCACCTCC-TAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCA
64 CCCGCACATCCAT-G-CACCAAGGGGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAG-GGCCT
*
37385182 AG-G
125 AGTT
* * * * ** * * * *
37385185 TACCGATGGTGCCAGAGGCTCCCTCACGACCAAGGGCCGAGG-TGCCGATGGTGACCGAGGCCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACCACCAAGCACCGAGGTTGCAGATGGTGCCCAAGGCTCC
* ** **** * *
37385249 CGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
66 CGCAC-ATCCATGCACC-AAGGGGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* * * ** * * *
37385313 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCAGATGGTGCCCGAGGTTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACCACCAAGCACCGAGGTTGCAGATGGTGCCCAAGGCTCC
* * *
37385378 CGCACATCCATGCACCAAGGTGTCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
66 CGCACATCCATGCACCAAGGGGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGTT
* * * * * * * *
37385441 TGTCGATAGTGTCTGAGGCTCCCGC-CCATCATAGCACCGAGG-TGCCGGTGGTGTCCAAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACCACCA-AGCACCGAGGTTGCAGATGGTGCCCAAGGCTC
* * * *
37385504 CCGTACATTCCA-GCACCTAGGGGCCGATGGTGGCCGAGGCTCCCGCATGACCAAGGGCCTATTT
65 CCGCACA-TCCATGCACCAAGGGGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
*
37385568 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
1 TGCCGATGGTGCCCGAGGCTCCCGCACCACCAAG
37385602 GGCTTAAATT
Statistics
Matches: 330, Mismatches: 73, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
127 98 0.30
128 193 0.58
129 39 0.12
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (128 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACCACCAAGCACCGAGGTTGCAGATGGTGCCCAAGGCTCC
CGCACATCCATGCACCAAGGGGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
Found at i:37385601 original size:298 final size:297
Alignment explanation
Indices: 37385064--37385730 Score: 880
Period size: 298 Copynumber: 2.2 Consensus size: 297
37385054 GGTGCCGATG
* * **
37385064 GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTG-TCCGAGGCTCCCGCACCT
1 GGTGCCCGAGG-TCCCGCACATCCAAGCACCAAGGTGACGATGGTGCT-CGAGGCTCCCGCACGA
* * *
37385128 CCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATG
64 CCAAG-GACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCAGAGCCACCAAGGTACCGATG
** *
37385193 GTGCCAGAGGCTCCCTCACGACCAAGGGCCGAGGTGCCGATGGTGACCGAGGCCCCCGCACGACC
128 GTGCCAGAGGCTCCCTCACGACCAAGCACCGAGGGGCCGATGGTGACCGAGGCCCCCGCACGACC
**
37385258 AAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGT
193 AAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAAATTGCCGATGGT
37385323 GCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCAGAT
258 GCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCAGAT
* *
37385363 GGTGCCCGAGGTTCCCGCACATCCATGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGAC
1 GGTGCCCGAGG-TCCCGCACATCCAAGCACCAAGGTGACGATGGTGCTCGAGGCTCCCGCACGAC
* * * * * * * * * *
37385428 CAAGGGCCTAGGTTGTCGATAG-TGTCTGAGGCTCCCGCCCATCATAG-CACCGAGGTGCCGGTG
65 CAAGGACCGAGG-TGCCGAT-GCTGCCCGAGGCTCCCGCACATCAGAGCCACCAAGGTACCGATG
* * * *
37385491 GTGTCCA-AGGCTCCCGT-AC-ATTCC-AGCACCTAGGGGCCGATGGTGGCCGAGGCTCCCGCAT
128 GTG-CCAGAGGCTCCC-TCACGA--CCAAGCACCGAGGGGCCGATGGTGACCGAGGCCCCCGCAC
*
37385552 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAAATTGTCGA
189 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAAATTGCCGA
*
37385617 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
254 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCAGAT
* * * *
37385661 GGTGCGCGAGGTCCTCGCACATCCAACCACCAAGGTGACGATGGTGCCCGAGGCTTCCGCACGAC
1 GGTGCCCGAGGTCC-CGCACATCCAAGCACCAAGGTGACGATGGTGCTCGAGGCTCCCGCACGAC
37385726 CAAGG
65 CAAGG
37385731 TGCCGACAAT
Statistics
Matches: 324, Mismatches: 36, Indels: 17
0.86 0.10 0.05
Matches are distributed among these distances:
297 4 0.01
298 226 0.70
299 92 0.28
300 2 0.01
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.16
Consensus pattern (297 bp):
GGTGCCCGAGGTCCCGCACATCCAAGCACCAAGGTGACGATGGTGCTCGAGGCTCCCGCACGACC
AAGGACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCAGAGCCACCAAGGTACCGATGGTG
CCAGAGGCTCCCTCACGACCAAGCACCGAGGGGCCGATGGTGACCGAGGCCCCCGCACGACCAAG
GGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAAATTGCCGATGGTGCC
CGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCAGAT
Found at i:37389985 original size:21 final size:22
Alignment explanation
Indices: 37389959--37390000 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
37389949 AAGGGACTTT
*
37389959 ATGATGATGTTTGAC-TATGAG
1 ATGATGATGTATGACTTATGAG
37389980 ATGATGATGTATGACTTATGA
1 ATGATGATGTATGACTTATGA
37390001 TTGTGAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (22 bp):
ATGATGATGTATGACTTATGAG
Found at i:37392281 original size:6 final size:6
Alignment explanation
Indices: 37392259--37392300 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
37392249 TACTATATTA
*
37392259 ATTTTT AATTATTT ATTTTT ATTTCT ATTTTT A-TTTT ATTTT
1 ATTTTT -ATT-TTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
37392301 AGGTCGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 5 0.16
6 17 0.55
7 6 0.19
8 3 0.10
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:37400025 original size:19 final size:19
Alignment explanation
Indices: 37400001--37400041 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
37399991 ATTATGCTTG
37400001 ATGATAATTCAATTTAATT
1 ATGATAATTCAATTTAATT
37400020 ATGATAATTCAATTTAATT
1 ATGATAATTCAATTTAATT
37400039 ATG
1 ATG
37400042 TGTGTGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (19 bp):
ATGATAATTCAATTTAATT
Found at i:37405915 original size:14 final size:14
Alignment explanation
Indices: 37405898--37405927 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37405888 TAAGTATTAA
*
37405898 AAGTAACATATTTT
1 AAGTAAAATATTTT
37405912 AAGTAAAATATTTT
1 AAGTAAAATATTTT
37405926 AA
1 AA
37405928 CCTCATTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (14 bp):
AAGTAAAATATTTT
Found at i:37407551 original size:36 final size:36
Alignment explanation
Indices: 37407503--37407583 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
37407493 GTAAGTTGCA
* * *
37407503 CCCAACGCTAGTCGGTAAAACTGACAAATAGATGTG
1 CCCAACACTAGTCGGTAAAACCGAAAAATAGATGTG
* * * *
37407539 CCCAGCACTAGTCGGTATAACCGAAAAATGGGTGTG
1 CCCAACACTAGTCGGTAAAACCGAAAAATAGATGTG
37407575 CCCAACACT
1 CCCAACACT
37407584 CCCCGACACG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (36 bp):
CCCAACACTAGTCGGTAAAACCGAAAAATAGATGTG
Found at i:37416329 original size:101 final size:102
Alignment explanation
Indices: 37416214--37416398 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
37416204 AAAGTGATGG
*
37416214 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACC-GAATGATAATGGTCACATGTGTAGT
37416277 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTAGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTAGA
* * *
37416315 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
37416380 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
37416399 TGAACTGAAC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 6 0.08
101 38 0.49
102 34 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTAGA
Found at i:37416336 original size:51 final size:51
Alignment explanation
Indices: 37416212--37416396 Score: 214
Period size: 51 Copynumber: 3.6 Consensus size: 51
37416202 TGAAAGTGAT
* * * *
37416212 GGTCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGA-A-TGATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-TTA
* * *
37416262 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTTTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTA
* * * * * *
37416313 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-GGTAA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTA
37416363 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTA
37416397 TGTGAACTGA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 41 0.36
51 72 0.63
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTA
Found at i:37416400 original size:26 final size:26
Alignment explanation
Indices: 37416320--37416400 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
37416310 TTAGATCACG
37416320 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
37416346 CGTGTA-T-CGAATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
37416371 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
37416397 TGTG
1 TGTG
37416401 AACTGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:37416493 original size:45 final size:45
Alignment explanation
Indices: 37416407--37416495 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
37416397 TGTGAACTGA
* * * * *
37416407 ACATCATTGATTAGTAAAGTGGTTGCTATGTGTTTATTCCACCGG
1 ACATCATTGATTAATAAAGTGGTTGCTACGTGCTGAATCCACCGG
*
37416452 ACATCATTGATTAATAAGGTGGTTGCTACGTGCTGAATCCACCG
1 ACATCATTGATTAATAAAGTGGTTGCTACGTGCTGAATCCACCG
37416496 AGTATCTGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTACGTGCTGAATCCACCGG
Found at i:37417982 original size:13 final size:13
Alignment explanation
Indices: 37417961--37417996 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
37417951 TGAAATGTAT
*
37417961 ATTGGATTGAGAA
1 ATTGAATTGAGAA
37417974 ATTGAATTGAGAA
1 ATTGAATTGAGAA
37417987 ATTGAATTGA
1 ATTGAATTGA
37417997 ATTGTGAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (13 bp):
ATTGAATTGAGAA
Found at i:37430435 original size:27 final size:27
Alignment explanation
Indices: 37430397--37430450 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
37430387 AGTACAAAAA
37430397 AAAAAAAGTAAATAACAGGGAATCCAC
1 AAAAAAAGTAAATAACAGGGAATCCAC
37430424 AAAAAAAGTAAATAACAGGGAATCCAC
1 AAAAAAAGTAAATAACAGGGAATCCAC
37430451 CTAGTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.11
Consensus pattern (27 bp):
AAAAAAAGTAAATAACAGGGAATCCAC
Found at i:37434275 original size:2 final size:2
Alignment explanation
Indices: 37434270--37434300 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
37434260 TTTTGTTGTT
37434270 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
37434301 AAGAATCCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:37434961 original size:9 final size:9
Alignment explanation
Indices: 37434937--37434974 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
37434927 CATTGAAATT
37434937 ATTTAAAAA
1 ATTTAAAAA
* *
37434946 GTATAAAAA
1 ATTTAAAAA
37434955 ATTT-AAAA
1 ATTTAAAAA
37434963 ATTTAAAAA
1 ATTTAAAAA
37434972 ATT
1 ATT
37434975 AATTAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:37435288 original size:65 final size:65
Alignment explanation
Indices: 37435165--37435288 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 65
37435155 ATAATGCATT
* * *
37435165 ATGTCAAATTTAGCCCTTAACGTTTACATATTTTTTCAACTTGGCTCTTATTCTTTTTTGGTATA
1 ATGTCAAATTTAGCCCTTAACGTTGACATATTTTTTCAACTTAGCTCTTATTCATTTTTGGTATA
* * *
37435230 ATGTCAAATTTTA-CCCTTAATGTTGACATCTTTTTATCAATTTAGCTCTTATT-ATTTTT
1 ATGTCAAA-TTTAGCCCTTAACGTTGACATATTTTT-TCAACTTAGCTCTTATTCATTTTT
37435289 CAAAATTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
65 32 0.63
66 19 0.37
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.51
Consensus pattern (65 bp):
ATGTCAAATTTAGCCCTTAACGTTGACATATTTTTTCAACTTAGCTCTTATTCATTTTTGGTATA
Found at i:37435847 original size:20 final size:22
Alignment explanation
Indices: 37435822--37435866 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
37435812 TTATTTTAGA
*
37435822 ATTTTTTTA-ACTTTTTAT-AT
1 ATTTTTTTAGAATTTTTATAAT
37435842 A-TTTTTTAGAATTTTTATAAT
1 ATTTTTTTAGAATTTTTATAAT
37435863 ATTT
1 ATTT
37435867 AAAAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.33
20 9 0.43
21 3 0.14
22 2 0.10
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
ATTTTTTTAGAATTTTTATAAT
Found at i:37437691 original size:16 final size:16
Alignment explanation
Indices: 37437672--37437707 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37437662 AAAATATAAT
*
37437672 TTTATCATTATATTAA
1 TTTATAATTATATTAA
*
37437688 TTTATAATTTTATTAA
1 TTTATAATTATATTAA
37437704 TTTA
1 TTTA
37437708 GAGGAGACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATAATTATATTAA
Found at i:37447466 original size:16 final size:16
Alignment explanation
Indices: 37447447--37447482 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37447437 AAAATATAAT
*
37447447 TTTATCATTATATTAA
1 TTTATAATTATATTAA
*
37447463 TTTATAATTTTATTAA
1 TTTATAATTATATTAA
37447479 TTTA
1 TTTA
37447483 GATGAGACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATAATTATATTAA
Found at i:37456994 original size:61 final size:58
Alignment explanation
Indices: 37456885--37457013 Score: 152
Period size: 61 Copynumber: 2.2 Consensus size: 58
37456875 ATTCATATTT
* * * *
37456885 TAATAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTGTATG
1 TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAAATATATG
* * *
37456943 TAATAATAATTATGTTAA-AATATGATTAAATTATTTCTTATTATTTTTATTAAAATATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTA--T-ATATTA-TTTTATTAAAATATATG
37457004 TAATAATAAT
1 TAATAATAAT
37457014 CTTATTGAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
57 13 0.22
58 17 0.28
59 1 0.02
60 5 0.08
61 24 0.40
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (58 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATTAAAATATATG
Found at i:37458766 original size:23 final size:22
Alignment explanation
Indices: 37458738--37458782 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
37458728 AAATTAAATA
37458738 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
37458761 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
37458783 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:37458785 original size:19 final size:19
Alignment explanation
Indices: 37458735--37458807 Score: 92
Period size: 19 Copynumber: 3.6 Consensus size: 19
37458725 TACAAATTAA
*
37458735 ATATCTAAGATTACAAAATC
1 ATATCTAAGATTAC-ATATC
37458755 ATATCTTCTAAGATTACATATC
1 ATA---TCTAAGATTACATATC
*
37458777 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
37458796 ATATCTAAGATT
1 ATATCTAAGATT
37458808 GCATTAACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
19 27 0.56
20 3 0.06
22 7 0.15
23 11 0.23
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (19 bp):
ATATCTAAGATTACATATC
Found at i:37458808 original size:19 final size:19
Alignment explanation
Indices: 37458761--37458811 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
37458751 AATCATATCT
*
37458761 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
37458780 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37458799 TCTAAGATTGCAT
1 TCTAAGATTGCAT
37458812 TAACTTGAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37459404 original size:44 final size:44
Alignment explanation
Indices: 37459355--37459560 Score: 181
Period size: 44 Copynumber: 4.8 Consensus size: 44
37459345 TTCTGATCCA
* *
37459355 CTCCACTGTAACTTCAGGGAGATAAGATTGGTTTCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTG
* * * *
37459399 TTCCACTGCAACCTCAGAGAGATAAGATTGGCTTATTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTG
* * * * * * *
37459443 CTCTACTGCAACCTCGGGGAGATGAGACTGG---ATGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTG
* * * *
37459484 CTCTACCGCAACTTCAGAGAGATAAGATCT-GTAGTT-TT-AACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-TGGT--TTATTCAATCTG
*
37459528 CTCCACTGTAACTTCAGGGAGATAAGATTGGTT
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTT
37459561 ACTTCAGTCT
Statistics
Matches: 128, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
41 31 0.24
42 2 0.02
43 1 0.01
44 93 0.73
45 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTCAATCTG
Found at i:37459548 original size:85 final size:86
Alignment explanation
Indices: 37459355--37459559 Score: 202
Period size: 85 Copynumber: 2.4 Consensus size: 86
37459345 TTCTGATCCA
* * * * *
37459355 CTCCACTGTAACTTCAGGGAGATAAGATTGGTTTCTTCAATCTGTTCCACTGCAACCTCAGAGAG
1 CTCCACTGTAACTTCAGGGAGATAAGACTGG--TATGCAATCTGCTCCACCGCAACCTCAGAGAG
*
37459420 ATAAGATTGGCTTATTCAATCTG
64 ATAAGATTGGCTTATTCAACCTG
* * * * * * * *
37459443 CTCTACTGCAACCTCGGGGAGATGAGACTGG-ATGCGATCTGCTCTACCGCAACTTCAGAGAGAT
1 CTCCACTGTAACTTCAGGGAGATAAGACTGGTATGCAATCTGCTCCACCGCAACCTCAGAGAGAT
37459507 AAGATCTGTAG-TT-TT-AACCTG
66 AAGAT-TG--GCTTATTCAACCTG
*
37459528 CTCCACTGTAACTTCAGGGAGATAAGATTGGT
1 CTCCACTGTAACTTCAGGGAGATAAGACTGGT
37459560 TACTTCAGTC
Statistics
Matches: 93, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
85 61 0.66
86 4 0.04
87 2 0.02
88 26 0.28
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (86 bp):
CTCCACTGTAACTTCAGGGAGATAAGACTGGTATGCAATCTGCTCCACCGCAACCTCAGAGAGAT
AAGATTGGCTTATTCAACCTG
Found at i:37460156 original size:45 final size:45
Alignment explanation
Indices: 37459568--37460151 Score: 704
Period size: 45 Copynumber: 13.0 Consensus size: 45
37459558 GTTACTTCAG
* * * * *
37459568 TCTTCGATCTACTTCGCTGCCAATATAGGAAGCCCAGATCTGCTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * *
37459613 TATTTGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* *
37459658 TCTTTGATCTACTTCGCTACCGATACAGGAAGACAAGATCTGTTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * * * * *
37459703 TCTTCGATCTACTTGGCTACTAATATAGGAAGACAAGATCTGCTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* *
37459748 TCTTTGATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGTTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * * * *
37459793 TCTTCGATCTACTTGGCTACCAATATAGGAAGACAAGATCTGCTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
*
37459838 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATATGTTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * * * *
37459883 TCTTCGATCTACTTCGCTACCAATATAGGAAAACAAGATCTGCTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * *
37459928 TATTTGATCTACTTTGCTGCCAACACAGGAAGACAAGATCTGTTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * * * * *
37459973 TCTTAGATCTACTTCACTACCAATATAGGAAGATAAGATCTATTA
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* *
37460018 T-TTTCGATCTACTTCGCTGTCAATACAGGAAGACAAGATCTGTTG
1 TCTTT-GATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * * * *
37460063 TTTTTGATCTGCTTCGCTGCCAATACAGGAAGATAAGATCTGCTG
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
* * *
37460108 TTTTTGATCTATTTTGCTGCCAATACAAGG-AGACAAGATCTGTT
1 TCTTTGATCTACTTCGCTGCCAATAC-AGGAAGACAAGATCTGTT
37460152 GTTTTCACTG
Statistics
Matches: 462, Mismatches: 74, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
44 2 0.00
45 454 0.98
46 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
Found at i:37460156 original size:90 final size:90
Alignment explanation
Indices: 37459568--37460151 Score: 803
Period size: 90 Copynumber: 6.5 Consensus size: 90
37459558 GTTACTTCAG
* * * * * * * *
37459568 TCTTCGATCTACTTCGCTGCCAATATAGGAAGCCCAGATCTGCTATATTTGATCTACTTCGCTGC
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
37459633 CAATATAGGAAGACAAGATCTGCTA
66 CAATATAGGAAGACAAGATCTGCTA
* * *
37459658 TCTTTGATCTACTTCGCTACCGATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTGGCTAC
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
*
37459723 TAATATAGGAAGACAAGATCTGCTA
66 CAATATAGGAAGACAAGATCTGCTA
* * *
37459748 TCTTTGATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGTTATCTTCGATCTACTTGGCTAC
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
37459813 CAATATAGGAAGACAAGATCTGCTA
66 CAATATAGGAAGACAAGATCTGCTA
*
37459838 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATATGTTATCTTCGATCTACTTCGCTAC
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
*
37459903 CAATATAGGAAAACAAGATCTGCTA
66 CAATATAGGAAGACAAGATCTGCTA
* * * * *
37459928 TATTTGATCTACTTTGCTGCCAACACAGGAAGACAAGATCTGTTATCTTAGATCTACTTCACTAC
1 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
* **
37459993 CAATATAGGAAGATAAGATCTATTA
66 CAATATAGGAAGACAAGATCTGCTA
* * * * * *
37460018 T-TTTCGATCTACTTCGCTGTCAATACAGGAAGACAAGATCTGTTGTTTTTGATCTGCTTCGCTG
1 TCTTT-GATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTA
* * *
37460082 CCAATACAGGAAGATAAGATCTGCTG
65 CCAATATAGGAAGACAAGATCTGCTA
* * *
37460108 TTTTTGATCTATTTTGCTGCCAATACAAGG-AGACAAGATCTGTT
1 TCTTTGATCTACTTCGCTGCCAATAC-AGGAAGACAAGATCTGTT
37460152 GTTTTCACTG
Statistics
Matches: 443, Mismatches: 48, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
89 3 0.01
90 434 0.98
91 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (90 bp):
TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTAC
CAATATAGGAAGACAAGATCTGCTA
Found at i:37464529 original size:19 final size:19
Alignment explanation
Indices: 37464494--37464538 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37464484 CCCAATCTCC
*
37464494 AAAATAATTAAACAGCCTA
1 AAAATAATTAAACAGCCCA
*
37464513 AAAATGAATTACA-AGCCCA
1 AAAAT-AATTAAACAGCCCA
37464532 AAAATAA
1 AAAATAA
37464539 GAAAAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 15 0.65
20 6 0.26
ACGTcount: A:0.60, C:0.16, G:0.07, T:0.18
Consensus pattern (19 bp):
AAAATAATTAAACAGCCCA
Found at i:37465022 original size:13 final size:14
Alignment explanation
Indices: 37465004--37465032 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37464994 TTTCTGCTTG
37465004 TTTTATTTTAT-TT
1 TTTTATTTTATCTT
37465017 TTTTATTTTATCTT
1 TTTTATTTTATCTT
37465031 TT
1 TT
37465033 ACATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTATTTTATCTT
Found at i:37465863 original size:21 final size:21
Alignment explanation
Indices: 37465823--37465865 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37465813 TAATATAGTA
*
37465823 TTATTATTATTATTGCTTACC
1 TTATTATTATTATTACTTACC
* *
37465844 TTATTATTATTTTTATTTACC
1 TTATTATTATTATTACTTACC
37465865 T
1 T
37465866 ATTTATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTATTATTATTACTTACC
Found at i:37465958 original size:25 final size:25
Alignment explanation
Indices: 37465921--37465978 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
37465911 ATTTTAAAAC
* *
37465921 TTTATAATTTATATATATACATATT
1 TTTATAATATATATACATACATATT
* *
37465946 TTTATAATATATATACGTTCATATT
1 TTTATAATATATATACATACATATT
*
37465971 TTCATAAT
1 TTTATAAT
37465979 TTACTTGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTATAATATATATACATACATATT
Found at i:37466086 original size:9 final size:10
Alignment explanation
Indices: 37466032--37466088 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
37466022 TTATAACTTA
*
37466032 TATATATATC
1 TATATATATT
37466042 TATATATATCT
1 TATATATAT-T
*
37466053 ACATATATATT
1 -TATATATATT
*
37466064 TTTATATATT
1 TATATATATT
*
37466074 TTTATAATATT
1 TATAT-ATATT
37466085 TATA
1 TATA
37466089 CGTATTTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
10 22 0.56
11 9 0.23
12 8 0.21
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (10 bp):
TATATATATT
Found at i:37469920 original size:21 final size:19
Alignment explanation
Indices: 37469885--37469950 Score: 105
Period size: 19 Copynumber: 3.4 Consensus size: 19
37469875 TCATATCTTT
37469885 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
37469904 TAAGATTGCATATATCATATC
1 TAAGATTGC--ATATCATATC
*
37469925 TAAGATTGCGTATCATATC
1 TAAGATTGCATATCATATC
37469944 TAAGATT
1 TAAGATT
37469951 ATGTTTTGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
19 25 0.57
21 19 0.43
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:37476270 original size:31 final size:31
Alignment explanation
Indices: 37476235--37476294 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
37476225 TTACTTAGCT
37476235 ATATCGGTGTGAGGCTGCTTGGAGTTGATCC
1 ATATCGGTGTGAGGCTGCTTGGAGTTGATCC
37476266 ATATCGGTGTGAGGCTGCTTGGAGTTGAT
1 ATATCGGTGTGAGGCTGCTTGGAGTTGAT
37476295 GCTGAGATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.17, C:0.13, G:0.37, T:0.33
Consensus pattern (31 bp):
ATATCGGTGTGAGGCTGCTTGGAGTTGATCC
Found at i:37481992 original size:43 final size:44
Alignment explanation
Indices: 37481931--37482022 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 44
37481921 CGGCTGTTTG
37481931 TTGGGAACTGCAGAACTG-TTGTGATGGGCTAGTTTTGGAACTC
1 TTGGGAACTGCAGAACTGTTTGTGATGGGCTAGTTTTGGAACTC
37481974 TTGGGAACTGCAGAACTGTTTGTGATGGGCTAGTTTTGGAACTC
1 TTGGGAACTGCAGAACTGTTTGTGATGGGCTAGTTTTGGAACTC
37482018 TTGGG
1 TTGGG
37482023 TGAACAACCT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 18 0.38
44 30 0.62
ACGTcount: A:0.20, C:0.13, G:0.34, T:0.34
Consensus pattern (44 bp):
TTGGGAACTGCAGAACTGTTTGTGATGGGCTAGTTTTGGAACTC
Found at i:37494591 original size:24 final size:25
Alignment explanation
Indices: 37494561--37494607 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37494551 ATGTTGATGT
*
37494561 AAATGGA-CCAATTTTTAACAGATA
1 AAATGGATACAATTTTTAACAGATA
*
37494585 AAATGGATAGAATTTTTAACAGA
1 AAATGGATACAATTTTTAACAGA
37494608 AGAACCGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.30
Consensus pattern (25 bp):
AAATGGATACAATTTTTAACAGATA
Found at i:37504802 original size:6 final size:6
Alignment explanation
Indices: 37504791--37504815 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
37504781 CTTGGATTTT
37504791 GAAAAC GAAAAC GAAAAC GAAAAC G
1 GAAAAC GAAAAC GAAAAC GAAAAC G
37504816 GGAGTTGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.16, G:0.20, T:0.00
Consensus pattern (6 bp):
GAAAAC
Found at i:37507841 original size:44 final size:43
Alignment explanation
Indices: 37507788--37507895 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 43
37507778 TAGTTTTAAT
*
37507788 TTGCTCCACTGCAACTTCAGGGAGTTAGGTTTTG-TATCTTCAAC
1 TTGCTCCACTGCAACTTCAGGGAGTAAGG-TTTGCTA-CTTCAAC
* * *
37507832 TTGCCCCACTGCAACGTCATGGGGGTAAGGTTTGCTACTTCAAC
1 TTGCTCCACTGCAACTTCA-GGGAGTAAGGTTTGCTACTTCAAC
* *
37507876 CTGCTCTACTGCAACTTCAG
1 TTGCTCCACTGCAACTTCAG
37507896 AGAGATAAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.02
44 43 0.80
45 10 0.19
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.31
Consensus pattern (43 bp):
TTGCTCCACTGCAACTTCAGGGAGTAAGGTTTGCTACTTCAAC
Found at i:37508101 original size:45 final size:44
Alignment explanation
Indices: 37508036--37508188 Score: 182
Period size: 45 Copynumber: 3.4 Consensus size: 44
37508026 AACTATGGTG
* * *
37508036 TCTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTC
1 TCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAG-TCTGCTA
* * * * *
37508081 TCTTCAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGGCTGGTG
1 TCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGTCTGCTA
* *
37508125 TCTT-TGATCTGCTTCGCTGTCAGTACAGGAAGGCAATGTCTGCTA
1 TCTTCAG-TCTGCTCCGCTGTCAGTACAGGAAGGCAA-GTCTGCTA
37508170 TCTTCAGTCTGCTCCGCTG
1 TCTTCAGTCTGCTCCGCTG
37508189 CAAGCTCAAG
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 34 0.38
45 53 0.60
46 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (44 bp):
TCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGTCTGCTA
Found at i:37508332 original size:89 final size:89
Alignment explanation
Indices: 37508031--37508344 Score: 368
Period size: 89 Copynumber: 3.5 Consensus size: 89
37508021 CTGCAAACTA
* * *
37508031 TGGTGTCTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTCTCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCC
* * * *
37508096 ACTGT-CAGTACAAGAAGGCAAGGC
66 ACTGTAAACT-CAAGGAGGCGAGGC
* *
37508120 TGGTGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAATG-TCTGCTATCTTCAGTCTGCTC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAA-GATCTGCTATCTTCAGTCTGCTC
* * *
37508184 CGCTGCAAGCTCAAGGAGGCGAGGC
65 CACTGTAAACTCAAGGAGGCGAGGC
* * * *
37508209 TGGTGTCTTCGATCTGTTTCACTG-CTAATACAGGAAGACAAGATCTGCTATCTTCAGTTTGCTC
1 TGGTGTCTTCGATCTGCTTCGCTGTC-AGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTC
* *
37508273 TACTGTAAACTCAGGGAGGCGAGGC
65 CACTGTAAACTCAAGGAGGCGAGGC
* *
37508298 TGGTGTATTCGATCTGCTTCGCTG-CA-AACTCAGGAAGACAAGATCTG
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTA--CAGGAAGACAAGATCTG
37508345 TGGTTTTAAT
Statistics
Matches: 194, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
87 1 0.01
88 3 0.02
89 188 0.97
90 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCC
ACTGTAAACTCAAGGAGGCGAGGC
Found at i:37508530 original size:16 final size:15
Alignment explanation
Indices: 37508508--37508545 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
37508498 CCAGATGTGT
37508508 ATGAATGATATTTAC
1 ATGAATGATATTTAC
*
37508523 ATTGAATGATATTTGC
1 A-TGAATGATATTTAC
37508539 ATGAATG
1 ATGAATG
37508546 TATAATGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.39
Consensus pattern (15 bp):
ATGAATGATATTTAC
Found at i:37516320 original size:12 final size:12
Alignment explanation
Indices: 37516303--37516327 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37516293 ACAATCTGAC
37516303 TCCTAATACAAA
1 TCCTAATACAAA
37516315 TCCTAATACAAA
1 TCCTAATACAAA
37516327 T
1 T
37516328 ATTTTCTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (12 bp):
TCCTAATACAAA
Found at i:37517453 original size:14 final size:14
Alignment explanation
Indices: 37517434--37517460 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37517424 CTGCAGAAAA
37517434 CCCTGCTCTTCAAC
1 CCCTGCTCTTCAAC
37517448 CCCTGCTCTTCAA
1 CCCTGCTCTTCAA
37517461 TTGACACTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.48, G:0.07, T:0.30
Consensus pattern (14 bp):
CCCTGCTCTTCAAC
Found at i:37518970 original size:10 final size:10
Alignment explanation
Indices: 37518955--37518980 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
37518945 TAGCTAAACT
37518955 GTGGCTATCA
1 GTGGCTATCA
37518965 GTGGCTATCA
1 GTGGCTATCA
37518975 GTGGCT
1 GTGGCT
37518981 TGACCACGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (10 bp):
GTGGCTATCA
Found at i:37526040 original size:39 final size:39
Alignment explanation
Indices: 37525983--37526070 Score: 149
Period size: 39 Copynumber: 2.3 Consensus size: 39
37525973 AGTTAATTTT
*
37525983 GTTAGATTGACTCGTACAAAATATAAATCGGTCAATTCG
1 GTTAGATTGACTCATACAAAATATAAATCGGTCAATTCG
* *
37526022 GTTAGATTGACTCATACAAAATATAAATTGGTCGATTCG
1 GTTAGATTGACTCATACAAAATATAAATCGGTCAATTCG
37526061 GTTAGATTGA
1 GTTAGATTGA
37526071 TGAACCAACC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (39 bp):
GTTAGATTGACTCATACAAAATATAAATCGGTCAATTCG
Found at i:37534355 original size:18 final size:17
Alignment explanation
Indices: 37534334--37534372 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
37534324 TTCTTTTTGT
37534334 ATTTTATATGTTCAATTA
1 ATTTTAT-TGTTCAATTA
* *
37534352 ATTTTATTTTTTAATTA
1 ATTTTATTGTTCAATTA
37534369 ATTT
1 ATTT
37534373 ATTTATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTTATTGTTCAATTA
Found at i:37534375 original size:16 final size:17
Alignment explanation
Indices: 37534347--37534381 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37534337 TTATATGTTC
*
37534347 AATTAATTTTATTTTTT
1 AATTAATTTTATTTATT
37534364 AATTAA-TTTATTTATT
1 AATTAATTTTATTTATT
37534380 AA
1 AA
37534382 ATGAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
AATTAATTTTATTTATT
Found at i:37535395 original size:21 final size:22
Alignment explanation
Indices: 37535371--37535418 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
37535361 TTTATACGAT
* *
37535371 ATAAATTATATAATA-TATAAA
1 ATAAATTAAAAAATATTATAAA
37535392 ATAAATTAAAAAATATTATAAA
1 ATAAATTAAAAAATATTATAAA
*
37535414 TTAAA
1 ATAAA
37535419 AAATAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAAATTAAAAAATATTATAAA
Found at i:37539953 original size:20 final size:18
Alignment explanation
Indices: 37539917--37539956 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
37539907 CTTTCTTTTT
*
37539917 TTATAATATTTTTAATAA
1 TTATAATATTTTAAATAA
37539935 TTATATATATTTTAAAATAA
1 TTATA-ATATTTT-AAATAA
37539955 TT
1 TT
37539957 TTCATATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 7 0.37
20 7 0.37
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATAATATTTTAAATAA
Found at i:37542715 original size:3 final size:3
Alignment explanation
Indices: 37542707--37542755 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
37542697 AAGTGTAAAT
37542707 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
37542755 A
1 A
37542756 CAAAATAACC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:37544325 original size:132 final size:132
Alignment explanation
Indices: 37544104--37544509 Score: 668
Period size: 132 Copynumber: 3.1 Consensus size: 132
37544094 CGTTATTGTT
* * * * **
37544104 GATCTGCTTCACTAATGCTTAGGGGGACAGAATCTACAGTCTTTGACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
37544169 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
37544234 TC
131 TC
* *
37544236 GATCTGCTCCACTACTGCTTAGGGTGACAGAACCTGCAATCTTCAACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* *
37544301 GGGTGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAGATAAGATTCACTATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
37544366 TC
131 TC
* *
37544368 GATTTGCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* * *
37544433 GGGTGATAGGACTAATGGCTTAAATCTTCTTCTCTACTGTATTGAGAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
37544498 TC
131 TC
*
37544500 GATCTCCTCC
1 GATCTGCTCC
37544510 GCTGCCAAAT
Statistics
Matches: 254, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 254 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
GATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
TC
Found at i:37544551 original size:46 final size:46
Alignment explanation
Indices: 37544494--37545039 Score: 652
Period size: 46 Copynumber: 12.1 Consensus size: 46
37544484 AAGATTCACC
*
37544494 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAAACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* *
37544540 ATCTTCAATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGTT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * *
37544586 ATCTTTGATCTCCTTCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * *
37544632 ATC--CG-----CT--G-T--CAAATATAGGAAGACAAGATCTTCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * * *
37544666 ATCCTCGATCTCCTTCGTTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* *
37544712 ATCCTCGATCTCCTCCGCTGCCAAATACA-AGAAGACAAGATCCGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGA-AAGACAAGATCTGCT
* * * *
37544758 ATCTTCGATCCCCTCCACTGCCAATTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * *
37544804 ATCTTCGATCTCCTCCGCTGTCAATTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * *
37544850 ATCTTCGATCTCCTCCGTTGCCAAATACAGGAAGATAAGATCTG-T
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * *
37544895 AATCTTCGATCTCCTCCGCTGCCAAATATAGGAAGATAAGATCTGCT
1 -ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * * *
37544942 ATCTTCGATCTCTTCTGCTGCCAAATACAGGAAGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
* * * *
37544988 ATCTTCGATCTCTTCCGCTGCCAAATATAGGAAGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
37545034 ATCTTC
1 ATCTTC
37545040 ATTGATCTGT
Statistics
Matches: 447, Mismatches: 37, Indels: 32
0.87 0.07 0.06
Matches are distributed among these distances:
34 26 0.06
36 3 0.01
37 1 0.00
39 2 0.00
41 2 0.00
43 1 0.00
44 2 0.00
45 1 0.00
46 408 0.91
47 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
ATCTTCGATCTCCTCCGCTGCCAAATACAGAAAGACAAGATCTGCT
Found at i:37544639 original size:34 final size:34
Alignment explanation
Indices: 37544601--37544669 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
37544591 TGATCTCCTT
37544601 CGCTGCCAAATACAGGAAGACAAGATCTGCTATC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* * *
37544635 CGCTGTCAAATATAGGAAGACAAGATCTTCTATC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATC
37544669 C
1 C
37544670 TCGATCTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (34 bp):
CGCTGCCAAATACAGGAAGACAAGATCTGCTATC
Found at i:37546097 original size:21 final size:21
Alignment explanation
Indices: 37546071--37546117 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37546061 GGTATAGTAA
37546071 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** * *
37546092 GATCACTTCATGCCTCATTCT
1 GATCACCACATGCCCCAATCT
37546113 GATCA
1 GATCA
37546118 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.11, T:0.28
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:37546219 original size:7 final size:7
Alignment explanation
Indices: 37546200--37546251 Score: 61
Period size: 7 Copynumber: 7.0 Consensus size: 7
37546190 TTAGCCTCTC
37546200 CATTTTT
1 CATTTTT
37546207 -ACTTTTT
1 CA-TTTTT
37546214 CATTTTTTT
1 CA--TTTTT
37546223 CATTTTT
1 CATTTTT
37546230 CATTTTT
1 CATTTTT
37546237 CATTTTTT
1 CA-TTTTT
37546245 CATTTTT
1 CATTTTT
37546252 TTCATCTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
6 1 0.03
7 24 0.60
8 8 0.20
9 7 0.17
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (7 bp):
CATTTTT
Found at i:37546226 original size:23 final size:22
Alignment explanation
Indices: 37546200--37546251 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 22
37546190 TTAGCCTCTC
37546200 CATTTTT-ACTTTTTCATTTTTTT
1 CATTTTTCA-TTTTTCA-TTTTTT
37546223 CATTTTTCATTTTTCATTTTTT
1 CATTTTTCATTTTTCATTTTTT
37546245 CATTTTT
1 CATTTTT
37546252 TTCATCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.46
23 14 0.50
24 1 0.04
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTTCATTTTTCATTTTTT
Found at i:37546256 original size:9 final size:8
Alignment explanation
Indices: 37546209--37546252 Score: 65
Period size: 7 Copynumber: 5.6 Consensus size: 8
37546199 CCATTTTTAC
37546209 TTTTTCATT
1 TTTTTCA-T
37546218 TTTTTCA-
1 TTTTTCAT
37546225 TTTTTCA-
1 TTTTTCAT
37546232 TTTTTCAT
1 TTTTTCAT
37546240 TTTTTCAT
1 TTTTTCAT
37546248 TTTTT
1 TTTTT
37546253 TCATCTCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.41
8 13 0.38
9 7 0.21
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTCAT
Found at i:37547087 original size:18 final size:17
Alignment explanation
Indices: 37547064--37547103 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
37547054 TTTTTTTTCT
37547064 TTTTTTTTCTATGATTGA
1 TTTTTTTT-TATGATTGA
**
37547082 TTTTTTTTTATTTTTGA
1 TTTTTTTTTATGATTGA
37547099 TTTTT
1 TTTTT
37547104 GATTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.12, C:0.03, G:0.07, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTATGATTGA
Found at i:37547105 original size:24 final size:23
Alignment explanation
Indices: 37547078--37547148 Score: 83
Period size: 24 Copynumber: 3.1 Consensus size: 23
37547068 TTTTCTATGA
37547078 TTGATTTTTTTTTATTTTTGATTT
1 TTGATTTTTTTTTATTTTTG-TTT
*
37547102 TTGATTTTTTATTA-TTTTGTTT
1 TTGATTTTTTTTTATTTTTGTTT
* *
37547124 TTGTTTTTGTTTTTGTTTTT-TTT
1 TTGATTTT-TTTTTATTTTTGTTT
37547147 TT
1 TT
37547149 AGTCTGAACT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
22 10 0.24
23 14 0.34
24 17 0.41
ACGTcount: A:0.08, C:0.00, G:0.10, T:0.82
Consensus pattern (23 bp):
TTGATTTTTTTTTATTTTTGTTT
Found at i:37547119 original size:34 final size:34
Alignment explanation
Indices: 37547081--37547145 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
37547071 TCTATGATTG
37547081 ATTTT-TTTTTATTTTTGATTTTTGATTTTTTATT
1 ATTTTGTTTTTATTTTTG-TTTTTGATTTTTTATT
* *
37547115 ATTTTGTTTTTGTTTTTGTTTTTGTTTTTTT
1 ATTTTGTTTTTATTTTTGTTTTTGATTTTTT
37547146 TTTAGTCTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (34 bp):
ATTTTGTTTTTATTTTTGTTTTTGATTTTTTATT
Found at i:37547143 original size:6 final size:6
Alignment explanation
Indices: 37547082--37547148 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
37547072 CTATGATTGA
* * * *
37547082 TTTT-T TTTTAT TTTTGAT TTTTGA TTTT-T TATT-A TTTTGT TTTTGT
1 TTTTGT TTTTGT TTTTG-T TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
37547128 TTTTGT TTTTGT TTTT-T TTTT
1 TTTTGT TTTTGT TTTTGT TTTT
37547149 AGTCTGAACT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 15 0.29
6 31 0.60
7 6 0.12
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:37562185 original size:58 final size:59
Alignment explanation
Indices: 37562079--37562191 Score: 142
Period size: 58 Copynumber: 1.9 Consensus size: 59
37562069 TTTTCAAGAA
*
37562079 CTAACTTGAACAAAAAAAAGTTCAAGCCCCAATGTAAGAACAATTGCCAAGTTCAGGGT
1 CTAACTTGAACAAAAAAAAGTTCAAGCCCCAATATAAGAACAATTGCCAAGTTCAGGGT
* ** *
37562138 CTAACTTGAATAAAAAAAA-TTC-AGATTCCAATATGAGAA-AAGTTGCCAAGTTCA
1 CTAACTTGAACAAAAAAAAGTTCAAG-CCCCAATATAAGAACAA-TTGCCAAGTTCA
37562192 AACCCTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 4 0.09
58 25 0.53
59 18 0.38
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (59 bp):
CTAACTTGAACAAAAAAAAGTTCAAGCCCCAATATAAGAACAATTGCCAAGTTCAGGGT
Found at i:37565154 original size:21 final size:21
Alignment explanation
Indices: 37565130--37565169 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37565120 GAATGGAAAA
* *
37565130 TAAATAAATAAAAAAGAAAGT
1 TAAAAAAACAAAAAAGAAAGT
*
37565151 TAAAAAAACATAAAAGAAA
1 TAAAAAAACAAAAAAGAAA
37565170 AAAATTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (21 bp):
TAAAAAAACAAAAAAGAAAGT
Found at i:37566376 original size:15 final size:15
Alignment explanation
Indices: 37566353--37566386 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37566343 ATTATTTTTT
37566353 AATTCAAATAAAATA
1 AATTCAAATAAAATA
* *
37566368 AATTTAAATATAATA
1 AATTCAAATAAAATA
37566383 AATT
1 AATT
37566387 ATTTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTCAAATAAAATA
Found at i:37572237 original size:22 final size:22
Alignment explanation
Indices: 37572212--37572269 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
37572202 GAAACTGTTA
* * *
37572212 TTTTGTTGTTGTTTTTCTATTG
1 TTTTGTTGTTATTTTCCTACTG
*
37572234 TTTTGCTGTTATTTTCCTACTG
1 TTTTGTTGTTATTTTCCTACTG
*
37572256 TTTTGTTGTCATTT
1 TTTTGTTGTTATTT
37572270 CACTATTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.07, C:0.10, G:0.16, T:0.67
Consensus pattern (22 bp):
TTTTGTTGTTATTTTCCTACTG
Found at i:37574137 original size:2 final size:2
Alignment explanation
Indices: 37574132--37574157 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37574122 AAAAAATCTC
37574132 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
37574158 AAAAGCTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:37577253 original size:17 final size:17
Alignment explanation
Indices: 37577231--37577264 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37577221 AATACTCTCG
*
37577231 GATTAATTTGAAGAGTT
1 GATTAATTTCAAGAGTT
37577248 GATTAATTTCAAGAGTT
1 GATTAATTTCAAGAGTT
37577265 TAAAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (17 bp):
GATTAATTTCAAGAGTT
Found at i:37579768 original size:14 final size:14
Alignment explanation
Indices: 37579746--37579783 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
37579736 GATAGACTAC
37579746 ATTTC-AAAGACTT
1 ATTTCGAAAGACTT
37579759 ATTTCGAAAGACTT
1 ATTTCGAAAGACTT
* *
37579773 CTTTTGAAAGA
1 ATTTCGAAAGA
37579784 GTCAACCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (14 bp):
ATTTCGAAAGACTT
Found at i:37585655 original size:16 final size:15
Alignment explanation
Indices: 37585634--37585664 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
37585624 TTTTGCAATT
37585634 TTTTTATTTGTTTTTA
1 TTTTTA-TTGTTTTTA
37585650 TTTTTATTGTTTTTA
1 TTTTTATTGTTTTTA
37585665 ATAGATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (15 bp):
TTTTTATTGTTTTTA
Found at i:37589504 original size:16 final size:16
Alignment explanation
Indices: 37589483--37589521 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
37589473 TAACAATGGC
*
37589483 GATTTTAGGGTTTGAA
1 GATTTTAGGGTTTAAA
37589499 GATTTTAGGGTTTAAA
1 GATTTTAGGGTTTAAA
*
37589515 GGTTTTA
1 GATTTTA
37589522 AGAAGCAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (16 bp):
GATTTTAGGGTTTAAA
Found at i:37591574 original size:60 final size:61
Alignment explanation
Indices: 37591497--37591631 Score: 177
Period size: 61 Copynumber: 2.2 Consensus size: 61
37591487 CACACTAGTA
* * *
37591497 GTCACCCAAATATTAGTAAATTTC-TTCTTTGGTCACCAAACTC-TGAAAAGCTACAAAATG
1 GTCACCTAACTATTAGTAAATTTCTTTATTTGGTCACCAAAC-CATGAAAAGCTACAAAATG
* * *
37591557 GTCACCTAACTATTAGTAAATTTCTTTATTTGGTTACCCAACCATGAAAAGTTACAAAATG
1 GTCACCTAACTATTAGTAAATTTCTTTATTTGGTCACCAAACCATGAAAAGCTACAAAATG
37591618 GTCA-CTAAACTATT
1 GTCACCT-AACTATT
37591632 CAATTTTGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 25 0.38
61 41 0.62
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (61 bp):
GTCACCTAACTATTAGTAAATTTCTTTATTTGGTCACCAAACCATGAAAAGCTACAAAATG
Found at i:37591862 original size:60 final size:59
Alignment explanation
Indices: 37591790--37591914 Score: 135
Period size: 60 Copynumber: 2.1 Consensus size: 59
37591780 TAGCTAGCTA
* * * *
37591790 GTGACCAGAAAAGACAAAATT-GAATAATTGGGTGACGATTTTGTAACTTTTCATAGTTAG
1 GTGACCA-AAAA-AGAAAATTAGAATAATTGGATGACCATTTTGTAAATTTTCATAGTTAG
* * * *
37591850 GTGACCAAAAAAGGAATTTACTAATAGTTGGATGACCATTTTGTAAATTTTCATAGTTAG
1 GTGACCAAAAAAGAAAATTA-GAATAATTGGATGACCATTTTGTAAATTTTCATAGTTAG
*
37591910 ATGAC
1 GTGAC
37591915 TAGATAAGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
58 5 0.09
59 4 0.07
60 45 0.83
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (59 bp):
GTGACCAAAAAAGAAAATTAGAATAATTGGATGACCATTTTGTAAATTTTCATAGTTAG
Done.