Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 131 of 196
Found at i:39205121 original size:13 final size:13
Alignment explanation
Indices: 39205103--39205131 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
39205093 ACTATTAGTA
39205103 TTTTTTAAAATAT
1 TTTTTTAAAATAT
39205116 TTTTTTAAAATAT
1 TTTTTTAAAATAT
39205129 TTT
1 TTT
39205132 ACCATACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTTTAAAATAT
Found at i:39207719 original size:41 final size:41
Alignment explanation
Indices: 39207667--39207764 Score: 155
Period size: 41 Copynumber: 2.4 Consensus size: 41
39207657 TATTTGCATT
39207667 CTGTATCTGATATGGGCCAA-AGCCCTAATGTATTTCTGAGA
1 CTGTATCTGATATGGGCCAAGA-CCCTAATGTATTTCTGAGA
* *
39207708 CTGTATTTGATATGGGCCAAGACCCTAATGTATTTTTGAGA
1 CTGTATCTGATATGGGCCAAGACCCTAATGTATTTCTGAGA
39207749 CTGTATCTGA-ATGGGC
1 CTGTATCTGATATGGGC
39207765 TAAAACCCAA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
40 6 0.11
41 46 0.87
42 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (41 bp):
CTGTATCTGATATGGGCCAAGACCCTAATGTATTTCTGAGA
Found at i:39208706 original size:16 final size:17
Alignment explanation
Indices: 39208685--39208717 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
39208675 AGGTATAGTA
*
39208685 AAATATTTAAAA-AAAT
1 AAATATATAAAAGAAAT
39208701 AAATATATAAAAGAAAT
1 AAATATATAAAAGAAAT
39208718 TGGACACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (17 bp):
AAATATATAAAAGAAAT
Found at i:39212955 original size:21 final size:21
Alignment explanation
Indices: 39212938--39213009 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
39212928 CCGTAAGTGT
39212938 TGAACGGAAGCTCATAAGAGC
1 TGAACGGAAGCTCATAAGAGC
* * * *
39212959 TGAATGGAAACTCATAAGGGT
1 TGAACGGAAGCTCATAAGAGC
* ** *
39212980 TAAACAAAAGCTCAAAAGAGC
1 TGAACGGAAGCTCATAAGAGC
39213001 TGAACGGAA
1 TGAACGGAA
39213010 ACCCATTAGG
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.15
Consensus pattern (21 bp):
TGAACGGAAGCTCATAAGAGC
Found at i:39212991 original size:42 final size:42
Alignment explanation
Indices: 39212896--39213025 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
39212886 GCCCGAAGGC
* * * * * *
39212896 TAAACAAAAGCAT-ATAAGTGCTAAACAGAAACCCGTAAGTGT
1 TAAACAAAAGC-TCAAAAGAGCTGAACGGAAACCCATAAGGGT
* ** * * *
39212938 TGAACGGAAGCTCATAAGAGCTGAATGGAAACTCATAAGGGT
1 TAAACAAAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGT
*
39212980 TAAACAAAAGCTCAAAAGAGCTGAACGGAAACCCATTAGGGT
1 TAAACAAAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGT
39213022 TAAA
1 TAAA
39213026 TGGAAACTCA
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 1 0.01
42 69 0.99
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.18
Consensus pattern (42 bp):
TAAACAAAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGT
Found at i:39214160 original size:17 final size:18
Alignment explanation
Indices: 39214124--39214161 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
39214114 CTATTTAATC
* *
39214124 ACTATTTCTTTTGTTGAA
1 ACTATTTCTTTTGATAAA
39214142 ACTATTT-TTTTGATAAA
1 ACTATTTCTTTTGATAAA
39214159 ACT
1 ACT
39214162 GGGCCGACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.53
Consensus pattern (18 bp):
ACTATTTCTTTTGATAAA
Found at i:39215121 original size:75 final size:74
Alignment explanation
Indices: 39215054--39215278 Score: 297
Period size: 77 Copynumber: 2.9 Consensus size: 74
39215044 ATAAAAAGAT
* * *
39215054 ATATATGTATGTATATATATGTATATAAAAATTATAAAATATAAAAAATATATATAAGTCTGTAT
1 ATATATATATATATAGATATGTATAT--AAATTATAAAATATAAAAAATATATATAAGTCTGTAT
39215119 ATATATTTATGA
64 ATATA-TTATGA
* *
39215131 AAATAAATATATATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATAT
1 ATATATATATATATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATAT
39215196 ATATTTATGAAA
66 ATA-TTATG--A
* * **
39215208 ATAAATATATATATAGATATGTATATAAATTATAAAATATAACAAATATATAAATAAGAATGTAT
1 ATATATATATATATAGATATGTATATAAATTATAAAATATAA-AAA-ATATATATAAGTCTGTAT
39215273 ATATAT
64 ATATAT
39215279 AAATAAATTA
Statistics
Matches: 133, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
75 48 0.36
77 61 0.46
78 4 0.03
79 20 0.15
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (74 bp):
ATATATATATATATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATAT
ATATTATGA
Found at i:39215151 original size:77 final size:77
Alignment explanation
Indices: 39215065--39215278 Score: 342
Period size: 75 Copynumber: 2.8 Consensus size: 77
39215055 TATATGTATG
*
39215065 TATATATATGTATATAAAAATTATAAAATATAAAAAATATATATAAGTCTGTATATATATTTATG
1 TATAGATATGTATAT--AAATTATAAAATATAAAAAATATATATAAGTCTGTATATATATTTATG
39215130 AAAAT-AA-ATATA
64 AAAATAAATATATA
39215142 TATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATATATATTTATGAA
1 TATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATATATATTTATGAA
39215207 AATAAATATATA
66 AATAAATATATA
* **
39215219 TATAGATATGTATATAAATTATAAAATATAACAAATATATAAATAAGAATGTATATATAT
1 TATAGATATGTATATAAATTATAAAATATAA-AAA-ATATATATAAGTCTGTATATATAT
39215279 AAATAAATTA
Statistics
Matches: 129, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
75 53 0.41
76 2 0.02
77 50 0.39
78 3 0.02
79 21 0.16
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.38
Consensus pattern (77 bp):
TATAGATATGTATATAAATTATAAAATATAAAAAATATATATAAGTCTGTATATATATTTATGAA
AATAAATATATA
Found at i:39215315 original size:27 final size:27
Alignment explanation
Indices: 39215253--39215340 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
39215243 AATATAACAA
* * * *
39215253 ATATATA-AATAAGAATGTATATATAT
1 ATATATATTATAAAAATGTATGTATGT
* *
39215279 AAATAAATTAT-AAAA-GTATGTACGTGT
1 ATATATATTATAAAAATGTATGTA--TGT
39215306 ATATATATTATAAAAATGTATGTATGT
1 ATATATATTATAAAAATGTATGTATGT
39215333 ATATATAT
1 ATATATAT
39215341 AACGAAATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
25 6 0.12
26 8 0.16
27 24 0.49
28 4 0.08
29 7 0.14
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (27 bp):
ATATATATTATAAAAATGTATGTATGT
Found at i:39215341 original size:29 final size:27
Alignment explanation
Indices: 39215276--39215341 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 27
39215266 AATGTATATA
* *
39215276 TATAAATAAATTATAAAAGTATGTACG
1 TATATATATATTATAAAAGTATGTACG
* *
39215303 TGTATATATATTATAAAAATGTATGTATG
1 TATATATATATTAT-AAAA-GTATGTACG
39215332 TATATATATA
1 TATATATATA
39215342 ACGAAATTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 11 0.34
28 4 0.12
29 17 0.53
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.41
Consensus pattern (27 bp):
TATATATATATTATAAAAGTATGTACG
Found at i:39217461 original size:50 final size:50
Alignment explanation
Indices: 39217401--39217738 Score: 365
Period size: 51 Copynumber: 6.7 Consensus size: 50
39217391 TCATTCGATA
* *
39217401 CACGTAGTAGCCTTTACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
*
39217451 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* *
39217501 CACGTAGTAGCTTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * * *** *
39217552 CACATAGTAGCCTTCACTTAGTACTACATATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* * * *
39217603 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CAGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * * * *** *
39217654 CACATTGTAGCCTTCACTTAGTACTACATATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
*
39217705 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
39217739 TTCATCGATA
Statistics
Matches: 235, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
49 5 0.02
50 86 0.37
51 137 0.58
52 5 0.02
53 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
Found at i:39217626 original size:102 final size:102
Alignment explanation
Indices: 39217395--39217738 Score: 487
Period size: 102 Copynumber: 3.4 Consensus size: 102
39217385 CTTTTATCAT
* * * * * *
39217395 TCGATACACGTAGTAGCCTTTACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCACGTAG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * * * ***
39217458 TAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACATATGTGACCATCATTTA
* * *
39217496 -CGGTTCACGTAGTAGCTTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
39217560 AGCCTTCACTTAGTACTACATATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACATATGTGACCATCATTTA
* * *
39217597 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCAGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
39217662 AGCCTTCACTTAGTACTACATATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACATATGTGACCATCATTTA
39217699 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
39217739 TTCATCGATA
Statistics
Matches: 220, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
100 37 0.17
101 44 0.20
102 139 0.63
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACATATGTGACCATCATTTA
Found at i:39220638 original size:43 final size:44
Alignment explanation
Indices: 39220537--39220656 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 44
39220527 TCATCATTTT
*
39220537 AATCTGCTCCACTGCAAC-TCTAGGGAGATAGGATTAATAGCTTC
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGATTAATAGCTTC
** *
39220581 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-TCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTC
* *
39220624 AGTCTGCTCTACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
39220657 CTGGTGTTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
43 35 0.51
44 32 0.46
45 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTC
Found at i:39220741 original size:88 final size:88
Alignment explanation
Indices: 39220634--39220926 Score: 406
Period size: 88 Copynumber: 3.3 Consensus size: 88
39220624 AGTCTGCTCT
* * * * *
39220634 ACTGCAACTTCAGGGAGATAAGACTGGTGTTTTTGATCTACTTCACTGCTAGTACAGGAAGACAA
1 ACTGCTAC-TCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAA
*
39220699 GATCTACAATCTTCAACCTACTCC
65 GATCTACACTCTTCAACCTACTCC
* *
39220723 ACTGTTACTCAGGGAGATAAGGCTTGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAG
1 ACTGCTACTCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAG
*
39220788 ATCTACACTCTTCATCCTACTCC
66 ATCTACACTCTTCAACCTACTCC
* * * * *
39220811 ACTGCTGCTCAGGGAGATAAGGCTGGTGCTTTCGATCTACTTCACTGCCAGTACAAGAAAACAAG
1 ACTGCTACTCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAG
39220876 ATCTACACTCTTCAACCTACTCC
66 ATCTACACTCTTCAACCTACTCC
** * * *
39220899 TTTGCTGCTCAAGGAGATAAGGTTGGTG
1 ACTGCTACTCAGGGAGATAAGGCTGGTG
39220927 GCTTAAATCT
Statistics
Matches: 183, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
88 177 0.97
89 6 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
ACTGCTACTCAGGGAGATAAGGCTGGTGCTTTAGATCTACTTCACTGCAAGTACAGGAAGACAAG
ATCTACACTCTTCAACCTACTCC
Found at i:39220857 original size:43 final size:42
Alignment explanation
Indices: 39220716--39220858 Score: 101
Period size: 44 Copynumber: 3.3 Consensus size: 42
39220706 AATCTTCAAC
* * *
39220716 CTACTCCACTGTTACTCAGGGAGATAAGGCTTGTGCTTTAGAT
1 CTACTCCACTGCTGCTCAGGGAGATAAGGC-TGTGCTTTCGAT
* * * * * ***
39220759 CTACTTCACTGCAAG-TACAGGAAGACAAGATCTACACTCTTC-AT
1 CTACTCCACTGC-TGCT-CAGGGAGATAAG-GCTGTGCT-TTCGAT
39220803 CCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGCTTTCGAT
1 -CTACTCCACTGCTGCTCAGGGAGATAAGGCT-GTGCTTTCGAT
*
39220847 CTACTTCACTGC
1 CTACTCCACTGC
39220859 CAGTACAAGA
Statistics
Matches: 72, Mismatches: 20, Indels: 16
0.67 0.19 0.15
Matches are distributed among these distances:
43 27 0.38
44 30 0.42
45 15 0.21
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (42 bp):
CTACTCCACTGCTGCTCAGGGAGATAAGGCTGTGCTTTCGAT
Found at i:39221237 original size:24 final size:24
Alignment explanation
Indices: 39221205--39221263 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 24
39221195 CGGATTGCCC
*
39221205 CCACTGTAATCTTCAGGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
39221229 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
39221253 CCACTTGTAAT
1 CCAC-TGTAAT
39221264 TTTGGGACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:39222286 original size:38 final size:39
Alignment explanation
Indices: 39222236--39222352 Score: 139
Period size: 39 Copynumber: 3.1 Consensus size: 39
39222226 CATTTTTTTA
*
39222236 TTTTTTT-GGACTCAAAGCGCCCTTTATGAGTTTTCA-C
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACC
* *
39222273 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCACC
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACC
* ** * * *
39222312 TTTTTTTAGCACTCAAAATGCCCTTTGCGGGTTTTCTCC
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACC
39222351 TT
1 TT
39222353 GGTCATCTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
37 7 0.10
38 26 0.39
39 34 0.51
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.43
Consensus pattern (39 bp):
TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACC
Found at i:39222315 original size:39 final size:38
Alignment explanation
Indices: 39222236--39222328 Score: 134
Period size: 38 Copynumber: 2.4 Consensus size: 38
39222226 CATTTTTTTA
* * *
39222236 TTTTTTT-GGACTCAAAGCGCCCTTTATGAGTTTTCAC
1 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCAC
39222273 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCACC
1 TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCA-C
*
39222312 TTTTTTTAGCACTCAAA
1 TTTTTTTAGGACTCAAA
39222329 ATGCCCTTTG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 7 0.14
38 26 0.52
39 17 0.34
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.42
Consensus pattern (38 bp):
TTTTTTTAGGACTCAAAGCACCATTTACGAGTTTTCAC
Found at i:39231096 original size:37 final size:37
Alignment explanation
Indices: 39231037--39231142 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
39231027 GTATGATCAT
*
39231037 TTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCAC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
*
39231072 TTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCAC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
39231109 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
39231143 TAAAGCTATC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 7 0.11
36 4 0.06
37 55 0.83
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (37 bp):
TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAC
Found at i:39231159 original size:46 final size:46
Alignment explanation
Indices: 39231106--39231374 Score: 326
Period size: 46 Copynumber: 5.6 Consensus size: 46
39231096 TAAGTGTAGC
* *
39231106 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
39231152 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCC-AAAGCTAT
* * *
39231204 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
39231250 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCC-AAAGCTAT
* *
39231302 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
39231348 CACCTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
39231375 AGTACTCAAA
Statistics
Matches: 195, Mismatches: 12, Indels: 32
0.82 0.05 0.13
Matches are distributed among these distances:
45 4 0.02
46 104 0.53
48 1 0.01
49 2 0.01
50 1 0.01
52 78 0.40
53 5 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:39231216 original size:98 final size:98
Alignment explanation
Indices: 39231106--39231368 Score: 472
Period size: 98 Copynumber: 2.7 Consensus size: 98
39231096 TAAGTGTAGC
**
39231106 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
39231171 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
39231204 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
39231269 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
*
39231302 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACCTATCACTTTGTCACT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-TCACT
39231367 TG
65 TG
39231369 ATCAGAAGTA
Statistics
Matches: 157, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
98 151 0.96
99 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:39234438 original size:14 final size:15
Alignment explanation
Indices: 39234412--39234443 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
39234402 GAGCAACAAC
39234412 AATAAAAATAAGATA
1 AATAAAAATAAGATA
39234427 AATAAAAA-AAGATA
1 AATAAAAATAAGATA
39234441 AAT
1 AAT
39234444 CAATAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (15 bp):
AATAAAAATAAGATA
Found at i:39234645 original size:2 final size:2
Alignment explanation
Indices: 39234640--39234775 Score: 57
Period size: 2 Copynumber: 70.0 Consensus size: 2
39234630 AAAAAAAATG
* * * * *
39234640 TA TA TA GA TA TA TA TA TA GA TA TG TA TA TA AA T- TA TA -A AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
39234680 TA TA AA TA TA TA TA TA -A GTA TG TA TA TA TA TA AA TA AA T- TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * ** * * * *
39234721 TA AA AA TA TG TA CG TA TA TA TA TA TA T- TA TA AA AA TG TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
39234762 TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA
39234776 AGGGAATTTG
Statistics
Matches: 95, Mismatches: 33, Indels: 12
0.68 0.24 0.09
Matches are distributed among these distances:
1 5 0.05
2 89 0.94
3 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (2 bp):
TA
Found at i:39234774 original size:31 final size:30
Alignment explanation
Indices: 39234679--39234776 Score: 117
Period size: 29 Copynumber: 3.2 Consensus size: 30
39234669 AAATTATAAA
* *
39234679 ATATAAATATATATATAAGTATGTATATATAT
1 ATATAAAT-TATA-AAAAGTATGTATGTATAT
* *
39234711 AAATAAATTATAAAAA-TATGTACGTATAT
1 ATATAAATTATAAAAAGTATGTATGTATAT
*
39234740 ATATATATTATAAAAATGTATGTATGTATAT
1 ATATAAATTATAAAAA-GTATGTATGTATAT
39234771 ATATAA
1 ATATAA
39234777 GGGAATTTGA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
29 25 0.45
30 3 0.05
31 21 0.38
32 7 0.12
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (30 bp):
ATATAAATTATAAAAAGTATGTATGTATAT
Found at i:39234838 original size:19 final size:19
Alignment explanation
Indices: 39234810--39234846 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
39234800 TAAATGAGTA
39234810 AATAACAATAATAATAATT
1 AATAACAATAATAATAATT
* *
39234829 AATAATAATAGTAATAAT
1 AATAACAATAATAATAAT
39234847 ATCAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (19 bp):
AATAACAATAATAATAATT
Found at i:39237482 original size:17 final size:18
Alignment explanation
Indices: 39237460--39237493 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
39237450 ACTTAACACT
*
39237460 AAAATTCCAA-AAAAATA
1 AAAATTACAAGAAAAATA
39237477 AAAATTACAAGAAAAAT
1 AAAATTACAAGAAAAAT
39237494 GGACTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.18
Consensus pattern (18 bp):
AAAATTACAAGAAAAATA
Found at i:39237584 original size:17 final size:18
Alignment explanation
Indices: 39237557--39237590 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
39237547 TCGTCTCCTT
39237557 CTTTCTTCTTTTCTTTCC
1 CTTTCTTCTTTTCTTTCC
39237575 CTTT-TTCTTTTCTTTC
1 CTTTCTTCTTTTCTTTC
39237591 TTTCCTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTTCTTCTTTTCTTTCC
Found at i:39237590 original size:21 final size:21
Alignment explanation
Indices: 39237553--39237600 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
39237543 TTGTTCGTCT
39237553 CCTTCTTTCTTCTTTTCTTTC
1 CCTTCTTTCTTCTTTTCTTTC
*
39237574 CCTT-TTTCTTTTCTTTCTTTC
1 CCTTCTTTCTTCT-TTTCTTTC
*
39237595 CTTTCT
1 CCTTCT
39237601 GTTTCGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 15 0.65
22 1 0.04
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (21 bp):
CCTTCTTTCTTCTTTTCTTTC
Found at i:39238366 original size:23 final size:23
Alignment explanation
Indices: 39238322--39238368 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
39238312 TTTATAAATA
*
39238322 TTTTTATAAATTTGTATCTATTT
1 TTTTTATAAATCTGTATCTATTT
*
39238345 TTTTTATAAAATCT-TATGTATTT
1 TTTTTAT-AAATCTGTATCTATTT
39238368 T
1 T
39238369 CATCGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (23 bp):
TTTTTATAAATCTGTATCTATTT
Found at i:39247450 original size:22 final size:23
Alignment explanation
Indices: 39247424--39247466 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
39247414 ACTTGAATTT
39247424 TTAAA-TCCGAAAAACAAAAGAA
1 TTAAATTCCGAAAAACAAAAGAA
* *
39247446 TTAAATTCCTAAAAATAAAAG
1 TTAAATTCCGAAAAACAAAAG
39247467 TAGAGAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (23 bp):
TTAAATTCCGAAAAACAAAAGAA
Found at i:39247708 original size:22 final size:21
Alignment explanation
Indices: 39247677--39247718 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
39247667 ATTTGAACAT
*
39247677 ACTTAAAATTTATTTTTATTTA
1 ACTTAAAA-TTAATTTTATTTA
*
39247699 ACTTATAATTAATTTTATTT
1 ACTTAAAATTAATTTTATTT
39247719 TTTTAAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
ACTTAAAATTAATTTTATTTA
Found at i:39247748 original size:28 final size:30
Alignment explanation
Indices: 39247710--39247765 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
39247700 CTTATAATTA
*
39247710 ATTTTATTTTTTTAAATA-CGAAAATAAAT
1 ATTTTATTTTTTAAAATAGCGAAAATAAAT
*
39247739 ATTTTA-TTTTTAAAATAGTGAAAATAA
1 ATTTTATTTTTTAAAATAGCGAAAATAA
39247766 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (30 bp):
ATTTTATTTTTTAAAATAGCGAAAATAAAT
Found at i:39250975 original size:32 final size:31
Alignment explanation
Indices: 39250931--39251048 Score: 112
Period size: 32 Copynumber: 3.7 Consensus size: 31
39250921 TCAAATAACT
39250931 AAGTAC-TAATTTGGACCAAAAAACTAAGTTC
1 AAGTACTTAA-TTGGACCAAAAAACTAAGTTC
* * * * *
39250962 AAGCACTAAATTTGAACCAAGAAACCAAGTTC
1 AAGTACTTAA-TTGGACCAAAAAACTAAGTTC
* * * *
39250994 AAGTACTTAATTAGACCAAGAAAGTCGAGTTC
1 AAGTACTTAATTGGACCAAAAAACT-AAGTTC
*
39251026 AAGTACTTAATTGGACCCAAAAA
1 AAGTACTTAATTGGACCAAAAAA
39251049 TAAAAAAATC
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
31 16 0.23
32 54 0.77
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (31 bp):
AAGTACTTAATTGGACCAAAAAACTAAGTTC
Found at i:39255873 original size:22 final size:21
Alignment explanation
Indices: 39255854--39255903 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
39255844 GTACTCTTCC
*
39255854 TATA-TTTGAAATTTAGTCTT
1 TATACTTTAAAATTTAGTCTT
39255874 TATACTTTTAAAATTTAGTCTT
1 TATAC-TTTAAAATTTAGTCTT
*
39255896 TACACTTT
1 TATACTTT
39255904 TCAAATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 3 0.12
22 19 0.73
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.54
Consensus pattern (21 bp):
TATACTTTAAAATTTAGTCTT
Found at i:39255904 original size:22 final size:22
Alignment explanation
Indices: 39255862--39255911 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
39255852 CCTATATTTG
*
39255862 AAATTTAGTCTTTATACTTTTA
1 AAATTTAGTCTTTACACTTTTA
*
39255884 AAATTTAGTCTTTACACTTTTC
1 AAATTTAGTCTTTACACTTTTA
39255906 AAATTT
1 AAATTT
39255912 CAAAATTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.52
Consensus pattern (22 bp):
AAATTTAGTCTTTACACTTTTA
Found at i:39266498 original size:33 final size:32
Alignment explanation
Indices: 39266426--39266501 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 32
39266416 ATGTTTAAAT
* * *
39266426 GTAAGACCATAGCTAGGCTATGGCATTTTAAT
1 GTAAGACCATAACTAGGCTATGGCATTTGAAC
* * *
39266458 GAAAAGACCATAACTGGGTTATGGCACTTTGAAC
1 G-TAAGACCATAACTAGGCTATGGCA-TTTGAAC
39266492 GTAAGACCAT
1 GTAAGACCAT
39266502 GGTTGGACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.03
33 28 0.80
34 6 0.17
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (32 bp):
GTAAGACCATAACTAGGCTATGGCATTTGAAC
Found at i:39271756 original size:21 final size:21
Alignment explanation
Indices: 39271730--39271780 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
39271720 GGAGCACAAA
39271730 GATGTATTGTGATTTGAAACG
1 GATGTATTGTGATTTGAAACG
39271751 GATGTATTGTGATTTGAAACG
1 GATGTATTGTGATTTGAAACG
*
39271772 GATGAATTG
1 GATGTATTG
39271781 GTGGCCGGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (21 bp):
GATGTATTGTGATTTGAAACG
Found at i:39282272 original size:43 final size:43
Alignment explanation
Indices: 39282225--39282356 Score: 158
Period size: 43 Copynumber: 3.1 Consensus size: 43
39282215 GGCCTTGCAT
* * * *
39282225 GTAATCAAATAACGATGCCATTATCCTAGACAGGGTCTTATAC
1 GTAATTAAATAACGATGCCAATGTCCTAGACAGGGTCTTACAC
* * *
39282268 GTAATTAAATAACAATGCCACTGTCCTAGATAGGGTCTTACAC
1 GTAATTAAATAACGATGCCAATGTCCTAGACAGGGTCTTACAC
* * **
39282311 GTAATTATAT-ACGATGCCAATGTCCCAGACTTGGTCTTACAC
1 GTAATTAAATAACGATGCCAATGTCCTAGACAGGGTCTTACAC
39282353 GTAA
1 GTAA
39282357 ATCTCAAATC
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 30 0.39
43 46 0.61
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (43 bp):
GTAATTAAATAACGATGCCAATGTCCTAGACAGGGTCTTACAC
Found at i:39282347 original size:42 final size:42
Alignment explanation
Indices: 39282192--39282394 Score: 149
Period size: 43 Copynumber: 4.7 Consensus size: 42
39282182 AAAAAGTTCG
** * * * * *
39282192 TACAATGCCAACATCCCAGACGTGGCCTTGCATGTAATCAAA
1 TACAATGCCAATGTCCCAGACTTGGTCTTACACGTAATTAAA
* * * * ** *
39282234 TAACGATGCCATTATCCTAGACAGGGTCTTATACGTAATTAAA
1 T-ACAATGCCAATGTCCCAGACTTGGTCTTACACGTAATTAAA
* * * *
39282277 TAACAATGCCACTGTCCTAGA-TAGGGTCTTACACGTAATTATA
1 T-ACAATGCCAATGTCCCAGACT-TGGTCTTACACGTAATTAAA
*
39282320 TACGATGCCAATGTCCCAGACTTGGTCTTACACGTAAATCTCAAA
1 TACAATGCCAATGTCCCAGACTTGGTCTTACACGT-AAT-T-AAA
* *
39282365 T-CAATGCCAACGTCCCAGACGTGGTCTTAC
1 TACAATGCCAATGTCCCAGACTTGGTCTTAC
39282395 GCGAAATCAC
Statistics
Matches: 130, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.22
43 71 0.55
44 27 0.21
45 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACTTGGTCTTACACGTAATTAAA
Found at i:39286298 original size:13 final size:13
Alignment explanation
Indices: 39286280--39286305 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39286270 ATTTTATTCG
39286280 AAAACCATTTGTT
1 AAAACCATTTGTT
39286293 AAAACCATTTGTT
1 AAAACCATTTGTT
39286306 TGCATAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:39295756 original size:50 final size:50
Alignment explanation
Indices: 39295632--39295880 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
39295622 GATAATAACA
* * ** * *
39295632 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
39295683 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
39295733 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
39295783 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
39295838 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
39295881 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:39295810 original size:100 final size:104
Alignment explanation
Indices: 39295631--39295880 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
39295621 TGATAATAAC
**
39295631 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
39295696 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
39295733 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
39295796 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
39295838 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
39295881 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:39295996 original size:13 final size:13
Alignment explanation
Indices: 39295975--39296006 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
39295965 GCTTGGATCA
*
39295975 TCATCAAATAAAT
1 TCATAAAATAAAT
39295988 TCATAAAATAAAT
1 TCATAAAATAAAT
39296001 TCATAA
1 TCATAA
39296007 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:39296253 original size:30 final size:30
Alignment explanation
Indices: 39296218--39296275 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
39296208 CCTCGACTCT
*
39296218 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
39296248 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
39296276 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:39303346 original size:50 final size:50
Alignment explanation
Indices: 39303222--39303470 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
39303212 GATAATAACA
* * ** * *
39303222 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
39303273 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
39303323 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
39303373 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
39303428 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
39303471 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:39303400 original size:100 final size:104
Alignment explanation
Indices: 39303221--39303470 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
39303211 TGATAATAAC
**
39303221 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
39303286 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
39303323 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
39303386 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
39303428 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
39303471 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:39303586 original size:13 final size:13
Alignment explanation
Indices: 39303565--39303596 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
39303555 GCTTGGATCA
*
39303565 TCATCAAATAAAT
1 TCATAAAATAAAT
39303578 TCATAAAATAAAT
1 TCATAAAATAAAT
39303591 TCATAA
1 TCATAA
39303597 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:39303843 original size:30 final size:30
Alignment explanation
Indices: 39303808--39303865 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
39303798 CCTCGACTCT
*
39303808 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
39303838 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
39303866 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:39305882 original size:42 final size:43
Alignment explanation
Indices: 39305784--39305956 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
39305774 AGCTCGTACA
* * * *
39305784 ATGCCAATGTCCCAGAC-GTGGCCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCATATATCG
* * *
39305827 ATGCCACTATCCCAGACAGGGTCTTATACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATATATCG
* * *
39305869 ATGCCAATGTCCCAGAGATGGTCTTACACGTAAATC-TCAAATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCAT-ATATCG
* * * *
39305913 ATGCCAACGTCCCAGGC-GTGGTCTTACACGAGATCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCATATATCG
39305956 A
1 A
39305957 ATCCTTTGTC
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 28 0.27
43 48 0.46
44 28 0.27
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCATATATCG
Found at i:39305925 original size:44 final size:44
Alignment explanation
Indices: 39305784--39305942 Score: 118
Period size: 44 Copynumber: 3.7 Consensus size: 44
39305774 AGCTCGTACA
* * * *
39305784 ATGCCAATGTCCCAGACG-TGGCCTTACATGT-AATC-AAATATCG
1 ATGCCAACGTCCCAGA-GATGGTCTTACACGTAAATCTCAA-ATCG
* * * * *
39305827 ATGCC-ACTATCCCAGACAGGGTCTTATACG-AAA--TCATATACG
1 ATGCCAAC-GTCCCAGAGATGGTCTTACACGTAAATCTCAAAT-CG
*
39305869 ATGCCAATGTCCCAGAGATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGAGATGGTCTTACACGTAAATCTCAAATCG
*
39305913 ATGCCAACGTCCCAG-GCGTGGTCTTACACG
1 ATGCCAACGTCCCAGAG-ATGGTCTTACACG
39305943 AGATCACATA
Statistics
Matches: 89, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 27 0.30
44 28 0.31
45 5 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGAGATGGTCTTACACGTAAATCTCAAATCG
Found at i:39305937 original size:86 final size:85
Alignment explanation
Indices: 39305784--39305948 Score: 194
Period size: 86 Copynumber: 1.9 Consensus size: 85
39305774 AGCTCGTACA
*
39305784 ATGCCAATGTCCCAGACGTGGCCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAATGTCCCAGACGTGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
*
39305849 CTTATACGAAATCATATACG
66 CTTACACGAAATCATATACG
* * * *
39305869 ATGCCAATGTCCCAGA-GATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-GTCCCAGGC-
1 ATGCCAATGTCCCAGACG-TGGCCTTACACGT-AATC-AAATATCGATGCC-ACTATCCCAGACA
*
39305930 GTGGTCTTACACGAGATCA
62 G-GGTCTTACACGAAATCA
39305949 CATATCGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
84 1 0.01
85 28 0.41
86 35 0.51
87 4 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACGTGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCATATACG
Found at i:39306436 original size:72 final size:72
Alignment explanation
Indices: 39306310--39306461 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 72
39306300 ATTTTCCAGG
* * *
39306310 AAGCGCCTC-AAAAACCTAAGCCCAACGATGCCATTTTTTGAGCTTTCAGGGATTTAGCGGCGTT
1 AAGCGCCGCAAAAAAACTAAGCCCAACGATGCCATTTTCTGAGCTTTCAGGGATTTAGCGGCGTT
*
39306374 TTTTAGA
66 TTTAAGA
* * *
39306381 AAGTGCCGCAAAAAAACTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTT
1 AAGCGCCGCAAAAAAACTAAGCCCAACGATGCCATTTTCTGAGCTTTCAGGGATTTAGCGGCGTT
39306446 TTTAAGA
66 TTTAAGA
39306453 AAGCGCCGC
1 AAGCGCCGC
39306462 TAATGCTTAG
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 7 0.10
72 65 0.90
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (72 bp):
AAGCGCCGCAAAAAAACTAAGCCCAACGATGCCATTTTCTGAGCTTTCAGGGATTTAGCGGCGTT
TTTAAGA
Found at i:39306509 original size:113 final size:114
Alignment explanation
Indices: 39306357--39306562 Score: 315
Period size: 114 Copynumber: 1.8 Consensus size: 114
39306347 TTGAGCTTTC
* * * * * * *
39306357 AGGGATTTAGCGGCGTTTTTTAGAAAGTGCCGCAAAAAAA-CTAAGCCCAACGATGCCGTTTTCT
1 AGGGATTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCATTTTCT
39306421 GAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTT
66 GAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTT
* *
39306470 AGGGCTTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACCTAAGCTCAACAACGCCATTTTCT
1 AGGGATTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCATTTTCT
*
39306535 GAGCTTTTGGGGATTTAGCGGCGTTTTT
66 GAGCTTTCGGGGATTTAGCGGCGTTTTT
39306563 TGGGAAAGTG
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 35 0.43
114 47 0.57
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (114 bp):
AGGGATTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCATTTTCT
GAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTT
Found at i:39306607 original size:74 final size:73
Alignment explanation
Indices: 39306475--39306793 Score: 451
Period size: 73 Copynumber: 4.4 Consensus size: 73
39306465 TGCTTAGGGC
* ** * * *
39306475 TTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACCTAAGCTCAACAACGCCATTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
39306540 TTTGGGGA
66 TTCGGGGA
* * *
39306548 TTTAGCGGCGTTTTTTGGGAAAGTGCCGCAAAGAAACCTAAGCCCAACGATGCCGTTTTCTGAGC
1 TTTAGCGGCG-TTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
39306613 TTTCGGGGA
65 TTTCGGGGA
* * * * *
39306622 TTTAACGACGTTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
39306687 TTCGGGGA
66 TTCGGGGA
*
39306695 TTTTA-CGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
1 -TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
*
39306759 TTTTGGGGA
65 TTTCGGGGA
*
39306768 TTTAGCGGCGTTTTTAGGAAAGCGCC
1 TTTAGCGGCGTTTTTGGGAAAGCGCC
39306794 ACTAATGCTC
Statistics
Matches: 219, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
72 4 0.02
73 150 0.68
74 65 0.30
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGA
Found at i:39306936 original size:334 final size:333
Alignment explanation
Indices: 39306319--39307056 Score: 1214
Period size: 334 Copynumber: 2.2 Consensus size: 333
39306309 GAAGCGCCTC
* * * * *
39306319 AAAAA-CCTAAGCCCAACGATGCCATTTTTTGAGCTTTCAGGGATTTAGCGGCGTTTTTTA-GAA
1 AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGATTTAGCGGCG-TTTTTAGGAA
* *
39306382 AGTGCCGCAAAAAAACTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTT
65 AGCGCCGCAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTT
* * *
39306447 TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTATTGAAAAAGCGCCGCAAAAAAACC
130 TTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTATTGAAAAAGCGCCGCAAAAAAACC
39306512 TAAGCTCAACAACGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCGC
195 TAAGCTCAACAACGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCGC
*
39306577 AAAGAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAACGACGTTTTTGGGAA
260 AAAGAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAACGACATTTTTGGGAA
39306642 AGCGTCGCA
325 AGCGTCGCA
39306651 AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGATTTTA-CGGCGTTTTTAGGAA
1 AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGA-TTTAGCGGCGTTTTTAGGAA
*
39306715 AGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTT
65 AGCGCCGCAAAAAAA-CTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTT
* * * * *
39306780 TTTAGGAAAGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCTCCGTAAAAAAAC
129 TTTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTATTGAAAAAGCGCCGCAAAAAAAC
* *
39306845 CTAAGCTCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCG
194 CTAAGCTCAACAACGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCG
* *
39306910 CAAA-AACACCTAAGCCCAATGATGCCGTTTTCTGAGCTTTCGGGGATTTAGCGACATTTTTGGG
259 CAAAGAA-ACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAACGACATTTTTGGG
39306974 AAAGCGTCGCA
323 AAAGCGTCGCA
*
39306985 AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGATTTAGTGGCGTTTTTAGGAAA
1 AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGATTTAGCGGCGTTTTTAGGAAA
39307050 GCGCCGC
66 GCGCCGC
39307057 TAATGCTCAA
Statistics
Matches: 378, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
332 11 0.03
333 61 0.16
334 306 0.81
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (333 bp):
AAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGATTTAGCGGCGTTTTTAGGAAA
GCGCCGCAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTT
TAAGAAAGCGCCACTAATGCTCAGGGCTTTAGCAGCGTTATTGAAAAAGCGCCGCAAAAAAACCT
AAGCTCAACAACGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCGCA
AAGAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAACGACATTTTTGGGAAA
GCGTCGCA
Found at i:39306937 original size:74 final size:72
Alignment explanation
Indices: 39306809--39307056 Score: 325
Period size: 73 Copynumber: 3.4 Consensus size: 72
39306799 TGCTCAGGGC
* * * * *
39306809 TTTAGCAGCGTTTTTGAGAAAGCTCCGTAAAAAAACCTAAGCTCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCG-CAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
39306874 TTTGGGGA
65 TTCGGGGA
* * *
39306882 TTTAGCGGCGTTTTTTGGGAAAGTGCCGCAAAAACACCTAAGCCCAATGATGCCGTTTTCTGAGC
1 TTTAGCGGCG-TTTTTGGGAAAGCGCCGCAAAAA-ACCTAAGCCCAACGACGCCGTTTTCTGAGC
39306947 TTTCGGGGA
64 TTTCGGGGA
* * * *
39306956 TTTAGCGACATTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAA-CCTAAGCCCAACGACGCCGTTTTCTGAGCT
39307021 TTCGGGGA
65 TTCGGGGA
* *
39307029 TTTAGTGGCGTTTTTAGGAAAGCGCCGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGC
39307057 TAATGCTCAA
Statistics
Matches: 151, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
72 1 0.01
73 93 0.62
74 57 0.38
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (72 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGA
Found at i:39306978 original size:188 final size:187
Alignment explanation
Indices: 39306630--39307284 Score: 552
Period size: 187 Copynumber: 3.5 Consensus size: 187
39306620 GATTTAACGA
* * *
39306630 CGTTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCTTTCGGGGA
1 CGTTTTTGAGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
39306695 TTTTACGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
66 TTTTACGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
39306760 TTTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCACTAATGCTCAGGGCTTTAGCAG
131 TTCGGGGATTTAGCGACATTTTTAGGAAAGCGCCACTAATGCTCAGGGCTTTAGCAG
* * *
39306817 CGTTTTTGAGAAAGC-TCCGTAAAAAAACCTAAGCTCAACGACGCCGTTTTCTGAGCTTTTGGGG
1 CGTTTTTGAGAAAGCGT-CGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGG
* * * * *
39306881 A-TTTAGCGGCGTTTTTTGGGAAAGTGCCGCAAAAACACCTAAGCCCAATGATGCCGTTTTCTGA
65 ATTTTA-CGGCG-TTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
* ** * * ** *
39306945 GCTTTCGGGGATTTAGCGACATTTTTGGGAAAGCGTCGCAAAAAAGC-CTA-AGC-CCAACGACG
128 GCTTTCGGGGATTTAGCGACATTTTTAGGAAAGCG-C-CACTAATGCTC-AGGGCTTTAGC-A-G
***** * * * **** * * * * *
39307007 CCGTTTTCTGATCTTTCG-GGGATTTAGTGGCGTTTTTAG--GAAAG-CGCCG----CTAATGC-
1 -CGTTTT-TGAGAAAGCGTCGCA--AAAAAAC---CTAAGCCCAACGACGCCGTTTTCTGA-GCT
** * *
39307063 -TCAAGG-CTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTT
58 TTCGGGGATTTTA-CGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTT
* *
39307126 TTCTGAGCTTTTGGGGATTTAGC-AGCATTTTTAGGAAAGCGCCATTAATGCTCAGGGCTTTAGC
122 TTCTGAGCTTTCGGGGATTTAGCGA-CATTTTTAGGAAAGCGCCACTAATGCTCAGGGCTTTAGC
*
39307190 GG
186 AG
* *
39307192 CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGA
1 CGTTTTTGAGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
* ** * *
39307257 TATTGTGGCGTATTTAGTAAAGCGCCGC
66 TTTTACGGCGTTTTTAGGAAAGCGCCGC
39307285 TAATGCCCTG
Statistics
Matches: 352, Mismatches: 83, Indels: 66
0.70 0.17 0.13
Matches are distributed among these distances:
179 3 0.01
181 3 0.01
182 7 0.02
183 5 0.01
184 8 0.02
185 10 0.03
186 13 0.04
187 165 0.47
188 95 0.27
189 8 0.02
190 10 0.03
191 8 0.02
192 4 0.01
193 7 0.02
194 3 0.01
196 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (187 bp):
CGTTTTTGAGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
TTTTACGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGACATTTTTAGGAAAGCGCCACTAATGCTCAGGGCTTTAGCAG
Found at i:39307147 original size:261 final size:261
Alignment explanation
Indices: 39306548--39307168 Score: 926
Period size: 261 Copynumber: 2.4 Consensus size: 261
39306538 CTTTTGGGGA
* * *
39306548 TTTAGCGGCGTTTTTTGGGAAAGTGCCGCAAAGAAACCTAAGCCCAACGATGCCGTTTTCTGAGC
1 TTTAGCGGCG-TTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * * *
39306613 TTTCGGGGATTTAACGACG-TTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAACGACGCCGT
65 TTTTGGGGATTTAGCGGCGTTTTTTGGGAAAGCGCCGCAAAAAAGCCTAAGCCCAACGACGCCGT
* * *
39306677 TTTCTGATCTTTCGGGGATTTTACGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAAC
130 TTTCTGAGCTTTCGGGGATTTTACGACATTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAAC
* *
39306742 GACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCACTAATGCTCAGG
195 GACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCACTAATGCTCAAG
39306807 GC
260 GC
* * * * *
39306809 TTTAGCAGCGTTTTTGAGAAAGCTCCGTAAAAAAACCTAAGCTCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
39306874 TTTGGGGATTTAGCGGCGTTTTTTGGGAAAGTGCCGCAAAAACA-CCTAAGCCCAATGATGCCGT
66 TTTGGGGATTTAGCGGCGTTTTTTGGGAAAGCGCCGCAAAAA-AGCCTAAGCCCAACGACGCCGT
* * *
39306938 TTTCTGAGCTTTCGGGGA-TTTAGCGACATTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAA
130 TTTCTGAGCTTTCGGGGATTTTA-CGACATTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAA
* * *
39307002 CGACGCCGTTTTCTGATCTTTCGGGGATTTAGTGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAA
194 CGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCACTAATGCTCAA
39307067 GGC
259 GGC
39307070 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
39307135 TTTGGGGATTTAGCAGC-ATTTTTAGGAAAGCGCC
66 TTTGGGGATTTAGCGGCGTTTTTTGGGAAAGCGCC
39307169 ATTAATGCTC
Statistics
Matches: 322, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
260 81 0.25
261 240 0.75
262 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (261 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTTGGGGATTTAGCGGCGTTTTTTGGGAAAGCGCCGCAAAAAAGCCTAAGCCCAACGACGCCGTT
TTCTGAGCTTTCGGGGATTTTACGACATTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
ACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCACTAATGCTCAAGG
C
Found at i:39307157 original size:114 final size:114
Alignment explanation
Indices: 39306956--39307517 Score: 743
Period size: 114 Copynumber: 4.9 Consensus size: 114
39306946 CTTTCGGGGA
* * * * *
39306956 TTTAGCGACATTTTTGGGAAAGCGTCGCAAAAAAGCCTAAGCCCAACGACGCCGTTTTCTGATCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
39307021 TTCGGGGATTTAGTGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAAGGC
66 TTTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
39307070 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * **
39307135 TTTGGGGATTTAGCAGCATTTTTAGGAAAGCGCCATTAATGCTCAGGGC
66 TTTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
*
39307184 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * * * *
39307249 TTTGGGGATATT-GTGGCGTATTTAGTAAAGCGCCGCTAATGCCCTGAGC
66 TTTGGGGAT-TTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* * * * * *
39307298 ATTAGCGGCGTTTTTGGGAATGTGCTGCAAAAAAACCTAAGGCCAACGACGCTGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
39307363 TTTCGGGGATTTAGCGGTGTTTTTAAGAAAGCGCCGCTAATGCT--GGGG
66 TTT-GGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* * * *
39307411 TTTAGCAGCGTTTTTGAGAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * **
39307476 TTTAGAGATTTAGCAGCGTTTTTTAATAAAGCGCCGCTAATG
66 TTTGGGGATTTAGCGGCG-TTTTTAGGAAAGCGCCGCTAATG
39307518 GTTAGGGATT
Statistics
Matches: 393, Mismatches: 51, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
112 11 0.03
113 84 0.21
114 265 0.67
115 33 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:39307772 original size:22 final size:21
Alignment explanation
Indices: 39307747--39307794 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
39307737 GTGTTACCAT
**
39307747 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGGGTATGGATTAT-GG
* *
39307769 TTTAGGGGGTATGGTTTATGG
1 TTTAAGGGGTATGGATTATGG
39307790 TTTAA
1 TTTAA
39307795 AGGCTGGGGT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
TTTAAGGGGTATGGATTATGG
Found at i:39307880 original size:7 final size:7
Alignment explanation
Indices: 39307832--39307880 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
39307822 TGTGTTAAGA
39307832 GTTTATGG
1 GTTTA-GG
39307840 GTTTAGG
1 GTTTAGG
39307847 GTTTTAGG
1 G-TTTAGG
*
39307855 GTTTA-A
1 GTTTAGG
*
39307861 GTTTATG
1 GTTTAGG
39307868 GTTTAGG
1 GTTTAGG
39307875 GTTTAG
1 GTTTAG
39307881 ATTAACTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
6 5 0.14
7 19 0.53
8 12 0.33
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (7 bp):
GTTTAGG
Found at i:39308164 original size:14 final size:16
Alignment explanation
Indices: 39308127--39308166 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
39308117 AATAATTATA
39308127 TATGGATTT-AGGGAT
1 TATGGATTTAAGGGAT
39308142 TATGG-TTTAAGGG-T
1 TATGGATTTAAGGGAT
39308156 TA-GGATTTAAG
1 TATGGATTTAAG
39308167 ATTTAGGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 12 0.52
15 9 0.39
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.40
Consensus pattern (16 bp):
TATGGATTTAAGGGAT
Found at i:39308171 original size:21 final size:21
Alignment explanation
Indices: 39308147--39308228 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
39308137 GGGATTATGG
39308147 TTTAAGGGTTAGGATTTAAGA
1 TTTAAGGGTTAGGATTTAAGA
* * * * *
39308168 TTTAGGGGTTAGAAGTTAGGG
1 TTTAAGGGTTAGGATTTAAGA
* * *
39308189 GTTAAGGGTTAAGAATTAAGGA
1 TTTAAGGGTTAGGATTTAA-GA
39308211 TTT-AGGGATTAGGATTTA
1 TTTAAGGG-TTAGGATTTA
39308229 GGGATTCAAG
Statistics
Matches: 44, Mismatches: 15, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
21 33 0.75
22 11 0.25
ACGTcount: A:0.32, C:0.00, G:0.33, T:0.35
Consensus pattern (21 bp):
TTTAAGGGTTAGGATTTAAGA
Found at i:39308224 original size:14 final size:14
Alignment explanation
Indices: 39308207--39308234 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
39308197 TTAAGAATTA
39308207 AGGATTTAGGGATT
1 AGGATTTAGGGATT
39308221 AGGATTTAGGGATT
1 AGGATTTAGGGATT
39308235 CAAGGGTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (14 bp):
AGGATTTAGGGATT
Found at i:39309525 original size:12 final size:12
Alignment explanation
Indices: 39309508--39309535 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
39309498 GAGGTTTTCT
39309508 TTTGTTTATTTA
1 TTTGTTTATTTA
39309520 TTTGTTTATTTA
1 TTTGTTTATTTA
39309532 TTTG
1 TTTG
39309536 AGTTTTCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (12 bp):
TTTGTTTATTTA
Found at i:39312196 original size:43 final size:43
Alignment explanation
Indices: 39312148--39312283 Score: 128
Period size: 43 Copynumber: 3.2 Consensus size: 43
39312138 TTTTTATGAC
* * *
39312148 CTTTAGTGGCGCTTTTATCAAAAATGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGATCATGTT
* ** * *
39312191 CTTTAGCGGCGCTTGTGGGTAAAGTGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGATCATGTT
* * * ** **
39312234 CTTTAGCGGTGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGATCATGTT
*
39312277 TTTTAGC
1 CTTTAGC
39312284 AGTGTTTTGT
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
CTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGATCATGTT
Found at i:39312289 original size:43 final size:43
Alignment explanation
Indices: 39312173--39312290 Score: 182
Period size: 43 Copynumber: 2.7 Consensus size: 43
39312163 TATCAAAAAT
* * *
39312173 GCCGCTAAAGATCATGTTCTTTAGCGGCGCTTGTGGGTAAAGT
1 GCCGCTAAAGATCATGTTCTTTAGCGGTGTTTGTGGGTAAAGC
*
39312216 GCCGCTAAAGGTCATGTTCTTTAGCGGTGTTTGTGGGTAAAGC
1 GCCGCTAAAGATCATGTTCTTTAGCGGTGTTTGTGGGTAAAGC
* *
39312259 GCCGCTAAAGATCATGTTTTTTAGCAGTGTTT
1 GCCGCTAAAGATCATGTTCTTTAGCGGTGTTT
39312291 TGTCTCATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (43 bp):
GCCGCTAAAGATCATGTTCTTTAGCGGTGTTTGTGGGTAAAGC
Found at i:39323798 original size:31 final size:30
Alignment explanation
Indices: 39323734--39323798 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
39323724 TATTTTTTTG
* **
39323734 GAGTTAAATTTGCATCTCAATTTTTTAAAA
1 GAGTTAAATTTGCATATCAATTTTCAAAAA
39323764 GAGTTAAATTTGACA-ATCAACTTTTCAAAAA
1 GAGTTAAATTTG-CATATCAA-TTTTCAAAAA
39323795 GAGT
1 GAGT
39323799 CGAATTGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (30 bp):
GAGTTAAATTTGCATATCAATTTTCAAAAA
Found at i:39325883 original size:26 final size:26
Alignment explanation
Indices: 39325854--39325943 Score: 71
Period size: 26 Copynumber: 3.5 Consensus size: 26
39325844 TATAACATTT
39325854 TAATTTAATTTATTCACATTATATAA
1 TAATTTAATTTATTCACATTATATAA
39325880 TAA-TTAATTTAATT-ACCA-TAT-TATA
1 TAATTTAATTT-ATTCA-CATTATATA-A
** * * *
39325905 TACCTCACTATTAATCACATTATATAA
1 TAATTTAAT-TTATTCACATTATATAA
39325932 TAATTTAATTTA
1 TAATTTAATTTA
39325944 AATTGATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
24 2 0.04
25 14 0.29
26 18 0.38
27 12 0.25
28 2 0.04
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (26 bp):
TAATTTAATTTATTCACATTATATAA
Found at i:39325944 original size:26 final size:26
Alignment explanation
Indices: 39325854--39325944 Score: 80
Period size: 25 Copynumber: 3.5 Consensus size: 26
39325844 TATAACATTT
*
39325854 TAATTTAATTTATTCACATTATATAA
1 TAATTTAATTTAATCACATTATATAA
*
39325880 TAA-TTAATTTAATTACCA-TAT-TATA
1 TAATTTAATTTAATCA-CATTATATA-A
** * *
39325905 TACCTCACTATTAATCACATTATATAA
1 TAATTTAAT-TTAATCACATTATATAA
39325932 TAATTTAATTTAA
1 TAATTTAATTTAA
39325945 ATTGATTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
24 2 0.04
25 16 0.33
26 14 0.29
27 15 0.31
28 2 0.04
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATTTAATTTAATCACATTATATAA
Found at i:39326102 original size:2 final size:2
Alignment explanation
Indices: 39326095--39326129 Score: 52
Period size: 2 Copynumber: 16.5 Consensus size: 2
39326085 ATATTGTATC
39326095 AT AT AT AT AT CAT AT AT AT CAT AT AT AT AT AT AT A
1 AT AT AT AT AT -AT AT AT AT -AT AT AT AT AT AT AT A
39326130 ATAAAATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 27 0.87
3 4 0.13
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:39326107 original size:11 final size:11
Alignment explanation
Indices: 39326091--39326129 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
39326081 ACACATATTG
39326091 TATCATATATA
1 TATCATATATA
39326102 TATC--ATATA
1 TATCATATATA
39326111 TATCATATATA
1 TATCATATATA
39326122 TAT-ATATA
1 TATCATATA
39326130 ATAAAATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.35
10 5 0.19
11 12 0.46
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (11 bp):
TATCATATATA
Found at i:39326111 original size:9 final size:9
Alignment explanation
Indices: 39326097--39326129 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
39326087 ATTGTATCAT
39326097 ATATATATC
1 ATATATATC
39326106 ATATATATC
1 ATATATATC
39326115 ATATATAT-
1 ATATATATC
39326123 ATATATA
1 ATATATA
39326130 ATAAAATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATATATC
Found at i:39326261 original size:12 final size:14
Alignment explanation
Indices: 39326235--39326266 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
39326225 TTTCATAATC
39326235 AAATTATTAATAAA
1 AAATTATTAATAAA
39326249 AAATTA-TAA-AAA
1 AAATTATTAATAAA
39326261 AAATTA
1 AAATTA
39326267 AATATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATTATTAATAAA
Found at i:39331716 original size:16 final size:16
Alignment explanation
Indices: 39331695--39331730 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
39331685 TGTCTGCTTC
* *
39331695 TATACATGTATATCTA
1 TATACATATATATATA
39331711 TATACATATATATATA
1 TATACATATATATATA
39331727 TATA
1 TATA
39331731 TTCTGTCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (16 bp):
TATACATATATATATA
Found at i:39336274 original size:27 final size:26
Alignment explanation
Indices: 39336244--39336294 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
39336234 ATGAAATTCT
*
39336244 TACAAA-CAACATGATTGATTAACAATA
1 TACAAAGCAA-ATGA-TGAATAACAATA
39336271 TACAAAGCAAATGATGAATAACAA
1 TACAAAGCAAATGATGAATAACAA
39336295 ATTAATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.41
27 10 0.45
28 3 0.14
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.22
Consensus pattern (26 bp):
TACAAAGCAAATGATGAATAACAATA
Found at i:39336473 original size:2 final size:2
Alignment explanation
Indices: 39336466--39336493 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
39336456 TTTTATGCAC
39336466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
39336494 GATAATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39336596 original size:23 final size:23
Alignment explanation
Indices: 39336552--39336596 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
39336542 ATAATAAGTT
**
39336552 TAAAAATAATATTAAGCCAATAA
1 TAAAAATAATATTAAAACAATAA
* *
39336575 TAAAAATAATGTTAAAATAATA
1 TAAAAATAATATTAAAACAATA
39336597 TATGAACATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (23 bp):
TAAAAATAATATTAAAACAATAA
Found at i:39340922 original size:24 final size:25
Alignment explanation
Indices: 39340894--39340944 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
39340884 TTTATATATA
*
39340894 TTAAATTAG-TTTTATGATTTTATT
1 TTAAATTAGATTTTAAGATTTTATT
*
39340918 TTAAATTAGATTTTAAGATTTTTTT
1 TTAAATTAGATTTTAAGATTTTATT
39340943 TT
1 TT
39340945 CTTTTTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (25 bp):
TTAAATTAGATTTTAAGATTTTATT
Found at i:39341353 original size:70 final size:70
Alignment explanation
Indices: 39341224--39341354 Score: 192
Period size: 70 Copynumber: 1.9 Consensus size: 70
39341214 TTTTAACTCG
* *
39341224 AAAAGACAAAACTACTTCGTTTTAATAAATGTTTATTTTTTAAAAAGTTAAAAGTCAAAACAATT
1 AAAAGACAAAACTACGTCGTTTTAATAAATGTTTATTTTTTAAAAAGTTAAAAGACAAAACAATT
39341289 AAGTT
66 AAGTT
* * **
39341294 AAAAGACAAAATTACGTCGTTTTGATAAATGTTTACTTTTTTTTAAAGTTAAAA-ACAAAAC
1 AAAAGACAAAACTACGTCGTTTTAATAAATGTTTA-TTTTTTAAAAAGTTAAAAGACAAAAC
39341355 TACGTCGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 38 0.70
71 16 0.30
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (70 bp):
AAAAGACAAAACTACGTCGTTTTAATAAATGTTTATTTTTTAAAAAGTTAAAAGACAAAACAATT
AAGTT
Found at i:39360940 original size:21 final size:20
Alignment explanation
Indices: 39360910--39360948 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
39360900 ACGCCTACAA
39360910 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
39360930 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
39360949 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:39366796 original size:24 final size:24
Alignment explanation
Indices: 39366764--39366837 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
39366754 CTCTCTGCTA
39366764 AAGTGCTCTTTAGAGCTTCCCGTT
1 AAGTGCTCTTTAGAGCTTCCCGTT
** * *
39366788 AAGTGCTCTTCGGAGCTACCCGAT
1 AAGTGCTCTTTAGAGCTTCCCGTT
* *
39366812 ATAG-ACTCTTTGTGAGCTTCCCGTT
1 A-AGTGCTCTTT-AGAGCTTCCCGTT
39366837 A
1 A
39366838 TTAAGCCCGG
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
24 26 0.67
25 13 0.33
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (24 bp):
AAGTGCTCTTTAGAGCTTCCCGTT
Found at i:39369604 original size:3 final size:3
Alignment explanation
Indices: 39369596--39369620 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
39369586 ATCTGTTTTC
39369596 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
39369621 TGTCAAGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:39372820 original size:16 final size:18
Alignment explanation
Indices: 39372783--39372821 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
39372773 AGCTAAATTA
39372783 TCAAGCTTCAACTTGAGC
1 TCAAGCTTCAACTTGAGC
*
39372801 TCAAGCTT-AA-TTGAGT
1 TCAAGCTTCAACTTGAGC
39372817 TCAAG
1 TCAAG
39372822 TTTGAGTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (18 bp):
TCAAGCTTCAACTTGAGC
Found at i:39374765 original size:143 final size:143
Alignment explanation
Indices: 39374489--39374776 Score: 332
Period size: 143 Copynumber: 2.0 Consensus size: 143
39374479 CTGCATACAA
* ** *
39374489 TATGAATAAATTAATTGGTTTCAATACAAAATATATTAGAAATTTATAAAAATCCTGAGTTTGTC
1 TATGAATAAATTAATTGGTTCCAATACAAAATATATTAGAAAAGTATAAAAATCCTGAATTTGTC
* * * ***
39374554 AAATTCATAAATACTTTTAAGAATTTCAAATTCAGCCCTAAACAAGGATTCAAAAAATCCATGGA
66 AAATTCATAAATACTTTTAAGAATTTCAAATTCAGCACTAAACAAGCATTCAAAAAACCCACAAA
*
39374619 TTTAAGAAATAAT
131 TTTAACAAATAAT
* * * **
39374632 TATGAATAAATTAGTTAGGTTCCAATATAAAATGTATTCTAAAAGTATAAAAATCCTGAATTTGT
1 TATGAATAAATTAATT-GGTTCCAATACAAAATATATTAGAAAAGTATAAAAATCCTGAATTTGT
* * *
39374697 CAAGTTCATAAA-AGC-TTTAATAATTTCAAATTCA-CTACTAAACAAGCATAT-AACAAACCCA
65 CAAATTCATAAATA-CTTTTAAGAATTTCAAATTCAGC-ACTAAACAAGCAT-TCAAAAAACCCA
*
39374758 CAAATTTAACATATAAT
127 CAAATTTAACAAATAAT
39374775 TA
1 TA
39374777 AAAAAGTAAC
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
142 1 0.01
143 67 0.55
144 53 0.44
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (143 bp):
TATGAATAAATTAATTGGTTCCAATACAAAATATATTAGAAAAGTATAAAAATCCTGAATTTGTC
AAATTCATAAATACTTTTAAGAATTTCAAATTCAGCACTAAACAAGCATTCAAAAAACCCACAAA
TTTAACAAATAAT
Found at i:39377101 original size:23 final size:24
Alignment explanation
Indices: 39377060--39377110 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
39377050 TGTATTTGTT
* * *
39377060 TTTAAATCTAGCATTA-TTTAATA
1 TTTAAATCTAACATCATTTTAAAA
*
39377083 TTTAAATTTAACATCATTTTAAAA
1 TTTAAATCTAACATCATTTTAAAA
39377107 TTTA
1 TTTA
39377111 TCATTAGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTAAATCTAACATCATTTTAAAA
Found at i:39385513 original size:17 final size:18
Alignment explanation
Indices: 39385486--39385520 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
39385476 CTTAATGAAT
*
39385486 TTAACAATTAATTTTTTA
1 TTAACAATTAAATTTTTA
39385504 TTAA-AATTAAATTTTTA
1 TTAACAATTAAATTTTTA
39385521 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAACAATTAAATTTTTA
Found at i:39386424 original size:11 final size:11
Alignment explanation
Indices: 39386408--39386432 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
39386398 AATATTTTTC
39386408 AATAAATTAAA
1 AATAAATTAAA
39386419 AATAAATTAAA
1 AATAAATTAAA
39386430 AAT
1 AAT
39386433 TTTATGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAATTAAA
Found at i:39386558 original size:14 final size:14
Alignment explanation
Indices: 39386539--39386565 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
39386529 ATATCCAAAT
39386539 AATAACAATAAAAC
1 AATAACAATAAAAC
39386553 AATAACAATAAAA
1 AATAACAATAAAA
39386566 TGATAGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (14 bp):
AATAACAATAAAAC
Found at i:39392229 original size:31 final size:31
Alignment explanation
Indices: 39392188--39392246 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
39392178 GTTACTAAAT
* *
39392188 TATTTGAAAGTTTTCATTTATGTCACTGAAC
1 TATTTAAAAGTTTTCATTTAAGTCACTGAAC
*
39392219 TATTTAAAAGTTTTTATTTAAGTCACTG
1 TATTTAAAAGTTTTCATTTAAGTCACTG
39392247 GGTAGTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (31 bp):
TATTTAAAAGTTTTCATTTAAGTCACTGAAC
Found at i:39396067 original size:16 final size:16
Alignment explanation
Indices: 39396046--39396081 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
39396036 TATTAACAAA
39396046 ATAATTTTCCCCCTCT
1 ATAATTTTCCCCCTCT
39396062 ATAATTTTCCCCCTCT
1 ATAATTTTCCCCCTCT
39396078 ATAA
1 ATAA
39396082 ATAAGAAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAATTTTCCCCCTCT
Found at i:39397493 original size:125 final size:125
Alignment explanation
Indices: 39397249--39397743 Score: 554
Period size: 125 Copynumber: 4.0 Consensus size: 125
39397239 AAATTTTTTG
* *
39397249 GGTCCTGAA-AAATTTATTTCGAGTTGACGTTTCTGGGCAAATAGTATGAAAAAACGCTTCAAGC
1 GGTCCTGAAGAAA-TAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT--AAAAACGCTTCAAGC
* *
39397313 AAGATGCTATT-TGAGAAGAATTTCTGAAATCGCGCCCTCA-TGGACGCGCTTTTGCTACAGTT
63 AGGATGCT-TTATGAGAAGAATTTCTGAAATCGCGCCCTAAGTGGACGCGCTTTTGCTACAGTT
* * * * * *
39397375 GGTCTTGGAAGAAATGATTTTGAGTTGACGTTTTTGAGCAAATAGTATAAAATCGCTTCTA-CTA
1 GGTCCT-GAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGC-A
* * *
39397439 GGATGCTTTATGAGAAGAATTTGTGAAATCGCGTCC-AAGTGGACGCGCTTTTGCTACAGTA
64 GGATGCTTTATGAGAAGAATTTCTGAAATCGCGCCCTAAGTGGACGCGCTTTTGCTACAGTT
* **** ** * *
39397500 GGTCCTAAATTTTTTTTTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAGATTCAAGCAGG
1 GGTCCTGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGG
** * * *
39397565 ATGCGATCTGAGAAGAATTTCTGAAATCGCGCCCT-CGTGGATGCGCTTTTGCTACAGTT
66 ATGCTTTATGAGAAGAATTTCTGAAATCGCGCCCTAAGTGGACGCGCTTTTGCTACAGTT
* * ** *
39397624 GGTCCTGAAAGAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAATTGCTTCTAGCAG
1 GGTCCTG-AAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAG
* * * *
39397689 GATGCTTTATGAGAAAAATTTGTGAAATCGC-ACCTACGTGGACGCGCTTTTGCTA
65 GATGCTTTATGAGAAGAATTTCTGAAATCGCGCCCTAAGTGGACGCGCTTTTGCTA
39397744 TAGTAGCATG
Statistics
Matches: 306, Mismatches: 54, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
124 107 0.35
125 158 0.52
126 5 0.02
127 33 0.11
128 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (125 bp):
GGTCCTGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGG
ATGCTTTATGAGAAGAATTTCTGAAATCGCGCCCTAAGTGGACGCGCTTTTGCTACAGTT
Found at i:39397711 original size:249 final size:251
Alignment explanation
Indices: 39397265--39397749 Score: 753
Period size: 249 Copynumber: 1.9 Consensus size: 251
39397255 GAAAAATTTA
* * * *
39397265 TTTCGAGTTGACGTTTCTGGGCAAATAGTATGAAAAAACGCTTCAAGCAAGATGCTATTTGAGAA
1 TTTCGAGTTGACGTTTCTGAGCAAATAGTATGAAAAAACGATTCAAGCAAGATGCGATCTGAGAA
* * *
39397330 GAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCTTGGAAGAAATGATTT
66 GAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTGAAAGAAATAATTT
* * * * *
39397395 TGAGTTGACGTTTTTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAGAAGAATT
131 CGAGTTGACATTTCTAAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAGAAAAATT
*
39397460 TGTGAAATCGCGTCC-AAGTGGACGCGCTTTTGCTACAGTAGGTCCTAAATTTTTTT
196 TGTGAAATCGC-ACCTAAGTGGACGCGCTTTTGCTACAGTAGGTCCTAAATTTTTTT
*
39397516 TTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAAA-GATTCAAGCAGGATGCGATCTGAGAA
1 TTTCGAGTTGACGTTTCTGAGCAAATAGTATGAAAAAACGATTCAAGCAAGATGCGATCTGAGAA
* *
39397579 GAATTTCTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTTGGTCCTGAAAGAAATAATTT
66 GAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTGAAAGAAATAATTT
*
39397644 CGAGTTGACATTTCTAAGCAAATAGTATAAAATTGCTTCTAGC-AGGATGCTTTATGAGAAAAAT
131 CGAGTTGACATTTCTAAGCAAATAGTATAAAATCGCTTCTA-CTAGGATGCTTTATGAGAAAAAT
* *
39397708 TTGTGAAATCGCACCTACGTGGACGCGCTTTTGCTATAGTAG
195 TTGTGAAATCGCACCTAAGTGGACGCGCTTTTGCTACAGTAG
39397750 CATGTTTGGG
Statistics
Matches: 213, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
248 2 0.01
249 174 0.82
250 7 0.03
251 30 0.14
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (251 bp):
TTTCGAGTTGACGTTTCTGAGCAAATAGTATGAAAAAACGATTCAAGCAAGATGCGATCTGAGAA
GAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTGAAAGAAATAATTT
CGAGTTGACATTTCTAAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAGAAAAATT
TGTGAAATCGCACCTAAGTGGACGCGCTTTTGCTACAGTAGGTCCTAAATTTTTTT
Found at i:39400985 original size:22 final size:22
Alignment explanation
Indices: 39400953--39401859 Score: 895
Period size: 22 Copynumber: 42.0 Consensus size: 22
39400943 AGCCTTTATG
*
39400953 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* **
39400975 TTATGAATTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
*
39400996 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* ***
39401018 TTATGAAATTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401040 TTACGGG-TTTTAAGTTAAGGG-
1 TTA-GGGTTTTTAAGTTAAGGGT
*
39401061 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* * *
39401083 TTATGGTCTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* * * *
39401105 TTAAGATTTTTAGGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401127 TTAGGGTTTTTAAGATAAGAGT
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401149 TTAGGG-TTTTAAGTTAAGAG-
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401169 TTAGGGTTTTTAGGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAGGGT
* **
39401191 TTATGGAATTTAAGTTAA-GG-
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401211 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* ** *
39401233 TTATGGAATTTAAGTTAAAGG-
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401254 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401276 TAAGGGTTTTTAGGTTAAGGGTT
1 TTAGGGTTTTTAAGTTAAGGG-T
*
39401299 TTTGGG-TTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401320 TTAGGGTTTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401341 TTAAGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* ** *
39401363 TTATGGAATTTAAGTTAA-GGA
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401384 TTA-GGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
** ** *
39401405 TTATAGAATTTAAGCTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401427 TTAGGGTTTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401448 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* **
39401470 TTATGGAATTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401492 TTAGGGTTTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401513 TTAGAGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* **
39401535 TTATGGAATTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401557 TTAGGGTTTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401578 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* ** *
39401600 TTATGGAATTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401622 TTAGGG-TTTTAAGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401642 TTAGGGTTTTTAGGTTAAGGGC
1 TTAGGGTTTTTAAGTTAAGGGT
* *** *
39401664 TTATGAAATTTAAGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401686 TTATGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
*
39401708 TT-GGGGTTTTAAGTTTAA-GGT
1 TTAGGGTTTTTAAG-TTAAGGGT
*
39401729 TTAGGGTTTTTAGGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401751 TTAAGGTTTTTAGGTTAAGGG-
1 TTAGGGTTTTTAAGTTAAGGGT
** *
39401772 TTAAAGTTTTT-TGCTTAAGGGT
1 TTAGGGTTTTTAAG-TTAAGGGT
* * * *
39401794 TTATGGTTTTTAGGTTTAGGAT
1 TTAGGGTTTTTAAGTTAAGGGT
* *
39401816 TTAGCGTTTTTAAGTTAAAGG-
1 TTAGGGTTTTTAAGTTAAGGGT
39401837 TTAGGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGT
39401859 T
1 T
39401860 AGGATTAGGG
Statistics
Matches: 722, Mismatches: 137, Indels: 52
0.79 0.15 0.06
Matches are distributed among these distances:
20 41 0.06
21 251 0.35
22 423 0.59
23 7 0.01
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
TTAGGGTTTTTAAGTTAAGGGT
Found at i:39401002 original size:43 final size:43
Alignment explanation
Indices: 39400952--39401862 Score: 872
Period size: 43 Copynumber: 21.1 Consensus size: 43
39400942 AAGCCTTTAT
**
39400952 GTTAGGGTTTTTAGGTTAAGGGTTTATGAATTTTAAGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
***
39400995 GTTAGGGTTTTTAGGTTAAGGGTTTATGAAATTTAAGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * *
39401038 GTTTACGGG-TTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGG
1 G-TTA-GGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * * * * * *
39401081 GTTTATGGTCTTTAAGTTAAAGGTTTAAGATTTTTAGGTTAAGAG
1 G-TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAG-G
* * * * * *
39401126 TTTAGGGTTTTTAAGATAAGAGTTTA-GGGTTTTAAGTTAAGA
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* **
39401168 GTTAGGGTTTTTAGGTTAAGAGTTTATGGAATTTAAGTTAA-G
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
** *
39401210 GTTAGGGTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAAG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * *
39401253 GTTAGGGTTTTTAGGTTAAGGGTTAAGGGTTTTTAGGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * *
39401296 GTTTTTGGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGG
1 G--TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* **
39401340 GTTAAGGTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * ** *
39401383 ATTA-GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGCTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * *
39401425 GTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGG
1 G-TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* ** * *
39401468 GTTTATGGAATTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGG
1 G-TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* **
39401512 GTTAGAGTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * *
39401555 GTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGG
1 G-TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* ** * * *
39401598 GTTTATGGAATTTAAGTTAAAGGTTTA-GGGTTTTAAGTTAAGG
1 G-TTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* ***
39401641 GTTAGGGTTTTTAGGTTAAGGGCTTATGAAATTTAAGTTAAGAG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAG-G
* * * * *
39401685 TTTATGGTTTTTAAGTTAAGGGTTT-GGGGTTTTAAGTTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAG-TTAAGG
* * *
39401728 TTTAGGGTTTTTAGGTTAAGGGTTTAAGGTTTTTAGGTTAAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
** * * * *
39401771 GTTAAAGTTTTTTGCTTAAGGGTTTATGGTTTTTAGGTTTAGG
1 GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
* * * * *
39401814 ATTTAGCGTTTTTAAGTTAAAGG-TTAGGGTTTTTAAGTTAAGG
1 -GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
39401857 GTTAGG
1 GTTAGG
39401863 ATTAGGGTTA
Statistics
Matches: 727, Mismatches: 121, Indels: 41
0.82 0.14 0.05
Matches are distributed among these distances:
42 128 0.18
43 396 0.54
44 194 0.27
45 9 0.01
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (43 bp):
GTTAGGGTTTTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG
Found at i:39401036 original size:65 final size:65
Alignment explanation
Indices: 39400961--39401859 Score: 979
Period size: 65 Copynumber: 13.9 Consensus size: 65
39400951 TGTTAGGGTT
* ** *
39400961 TTTAGGTTAAGGGTTTATGAATTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGAAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * **
39401026 TTTAAGTTAAGGGTTTACGGGTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGTC
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * * * * * * * *
39401091 TTTAAGTTAAAGGTTTAAGATTTTTAGGTTAAGAGTTTAGGGTTTTTAAGATAAGAGTTTA-GGG
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAG-GGTTAGGGTTTTTAGGTTAAGGGTTTATGGA
*
39401155 T
65 A
* * * * * ** * * *
39401156 TTTAAGTTAAGAG-TTAGGGTTTTTAGGTTAAGAGTTTATGGAATTTAAGTTAA-GG-TTAGGGT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAG-GGTTAGGGTTTTTAGGTTAAGGGTTTATGGA
*
39401218 T
65 A
* ** * * * **
39401219 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAAGGTTAGGGTTTTTAGGTTAAGGGTTAAGGGTT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * * * * *
39401284 TTTAGGTTAAGGGTTTTTGGGTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAAGGT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGA
*
39401348 T
65 A
* ** * *
39401349 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGATTA-GGTTTTTAGGTTAAGGGTTTATAGAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* *
39401413 TTTAAGCTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* *
39401478 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGAGTTTTTAGGTTAAGGGTTTATGGAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
*
39401543 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * * *
39401608 TTTAAGTTAAAGGTTTA-GGGTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGCTTATGAAA
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * * * * *
39401672 TTTAAGTTAAGAGTTTATGGTTTTTAAGTTAAGGGTTTGGGGTTTTAAGTTTAA-GGTTTAGGGT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGA
*
39401736 T
65 A
* * * ** * * **
39401737 TTTAGGTTAAGGGTTTAAGGTTTTTAGGTTAAGGGTTAAAGTTTTTTGCTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
* * * * *
39401802 TTTAGGTTTAGGATTTA-GCGTTTTTAAGTTAAAGGTTAGGGTTTTTAAGTTAAGGGTT
1 TTTAAGTTAAGGGTTTATG-GTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTT
39401860 AGGATTAGGG
Statistics
Matches: 720, Mismatches: 102, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
62 3 0.00
63 46 0.06
64 161 0.22
65 452 0.63
66 58 0.08
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.44
Consensus pattern (65 bp):
TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
Found at i:39401276 original size:15 final size:15
Alignment explanation
Indices: 39401273--39401306 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
39401263 TTAGGTTAAG
39401273 GGTTAAGGGTTTTTA
1 GGTTAAGGGTTTTTA
*
39401288 GGTTAAGGGTTTTTG
1 GGTTAAGGGTTTTTA
39401303 GGTT
1 GGTT
39401307 TTAAGTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (15 bp):
GGTTAAGGGTTTTTA
Found at i:39402171 original size:21 final size:21
Alignment explanation
Indices: 39402133--39402172 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
39402123 TTGTCCAGCT
*
39402133 TCCGGCGACGGTTGTGGTTAA
1 TCCGGCGACGGTTCTGGTTAA
39402154 TCCGGCGA-GGATTCTGGTT
1 TCCGGCGACGG-TTCTGGTT
39402173 CTTTCGGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.12, C:0.20, G:0.38, T:0.30
Consensus pattern (21 bp):
TCCGGCGACGGTTCTGGTTAA
Found at i:39402459 original size:18 final size:18
Alignment explanation
Indices: 39402436--39402474 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
39402426 ACTCGAAAAG
* *
39402436 GGATACATATAAGGGTTA
1 GGATACATAAAAGGGCTA
39402454 GGATACATAAAAGGGCTA
1 GGATACATAAAAGGGCTA
39402472 GGA
1 GGA
39402475 AACGCACCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.08, G:0.31, T:0.21
Consensus pattern (18 bp):
GGATACATAAAAGGGCTA
Found at i:39405961 original size:4 final size:4
Alignment explanation
Indices: 39405952--39406015 Score: 128
Period size: 4 Copynumber: 16.0 Consensus size: 4
39405942 TCACCCCTAC
39405952 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
39406000 ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT
39406016 GATTTATGTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:39407194 original size:17 final size:19
Alignment explanation
Indices: 39407172--39407207 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
39407162 TATATTAATT
39407172 TTTA-TTTTTAAT-ATTTA
1 TTTATTTTTTAATAATTTA
39407189 TTTATTTTTTAATAATTTA
1 TTTATTTTTTAATAATTTA
39407208 AATGATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTTTTTAATAATTTA
Found at i:39409722 original size:131 final size:131
Alignment explanation
Indices: 39409488--39409760 Score: 465
Period size: 131 Copynumber: 2.1 Consensus size: 131
39409478 GAATAAGCTC
* *
39409488 GCCTTTGTTTTTATTTAAAACACATTTATTTTAGTTTTAAAAGGATATTTAATTATTTAGGTTCA
1 GCCTTTATTTTTATTTAAAACACATTTATTTTAGTTTTAAAAGGATATTCAATTATTTAGGTTCA
* *
39409553 ACGCGAGAAAAATTGAAACCCAGTAAGTTAGGACACAACTTCTCGAATTTCCAAATACGGAATAT
66 ACGCGAGAAAAATTGAAACCCAATAAATTAGGACACAACTTCTCGAATTTCCAAATACGGAATAT
39409618 T
131 T
**
39409619 GCCTTTATTTTTATTTAAAACACATTTATTTTAGTTTTAAAAGGATATTCGGTTATTTAGGTTCA
1 GCCTTTATTTTTATTTAAAACACATTTATTTTAGTTTTAAAAGGATATTCAATTATTTAGGTTCA
* *
39409684 ACGCGAGAAAAATTGAAACCCAATAAATTAGGGCACAACTTCTCGAATTTCTAAATACGGAATAT
66 ACGCGAGAAAAATTGAAACCCAATAAATTAGGACACAACTTCTCGAATTTCCAAATACGGAATAT
39409749 T
131 T
*
39409750 GTCTTTATTTT
1 GCCTTTATTTT
39409761 CAAGATTTTC
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 133 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (131 bp):
GCCTTTATTTTTATTTAAAACACATTTATTTTAGTTTTAAAAGGATATTCAATTATTTAGGTTCA
ACGCGAGAAAAATTGAAACCCAATAAATTAGGACACAACTTCTCGAATTTCCAAATACGGAATAT
T
Found at i:39411823 original size:45 final size:44
Alignment explanation
Indices: 39411428--39412141 Score: 400
Period size: 44 Copynumber: 15.9 Consensus size: 44
39411418 TCATCGTTTT
* * *
39411428 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* * * * *
39411472 AACCTACTCCACTGCAACTTCAGAGAGATAAGGTTTGT-TACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTAT-CTTC
* ** *
39411516 AA-CTTGCTCCACTGCAACTTCAGAGAGATAA-AGTTCGTGGCTTT
1 AATC-TGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTATCTTC
* * * *
39411560 GATATGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACCGCTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGT-A----TCTTC
* * *
39411609 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATT-GATTTATTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG---TATCTTC
* * * *
39411655 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-AT-AT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* * * *
39411696 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T--CGTAT--CTTC
* ** * * *
39411747 AATCTGTTCTGCTGCGACTTTAGGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TATCTTC
* * * *
39411792 AGTTTGCTCCAGTGCAACTTCAGGGAGATAAGACTT-G-AT-AT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTATCTTC
* * * *
39411833 GATCTACTCTACTGCAACTTCAGAGAGATAAGA-TCTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-G-----TAT--CTTC
* ** * *
39411884 AATCTGTTCCACTGTGACTTCAGGGAAATAAGATTCGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TATCTTC
* *
39411929 AGTCTGCT-C-CTGCAACTTTAGGGAGATAAGACTT-GTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTATCTTC
* * * * * * *
39411971 AACCTGCTCTACTACAACTTCAAGGAGATAAGGTTTGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TATCTTC
* * * *
39412016 AGTCTGTTCTACTGTAACTTCAGGGAGATAAGACTT-GTAAT-TTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGT-ATCTTC
* * * * * * * **
39412060 AACCTGCCCCACTACAACTTGAGGGGGGTAAGATTAGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
39412104 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGT
39412142 CATGATGACT
Statistics
Matches: 505, Mismatches: 116, Indels: 98
0.70 0.16 0.14
Matches are distributed among these distances:
39 1 0.00
41 55 0.11
42 14 0.03
43 29 0.06
44 186 0.37
45 74 0.15
46 40 0.08
47 11 0.02
48 2 0.00
49 35 0.07
50 3 0.01
51 53 0.10
52 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
Found at i:39411833 original size:137 final size:136
Alignment explanation
Indices: 39411559--39411963 Score: 530
Period size: 137 Copynumber: 3.0 Consensus size: 136
39411549 TTCGTGGCTT
* * * *** *
39411559 TGATATGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAACCGCT--CTTCAATCTGCTCCACT
1 TGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTCAATCTGTTCCACT
* * * * **
39411622 GCAACTTTAGGGAGATAAGATT-GATTTATTTTTAACCTGCTCCACTGCAACTTCAGGGAGATAA
66 GCGACTTTAGGGAAATAAGATTCG--CTATCTTTAGTCTGCTCCA-TGCAACTTCAGGGAGATAA
**
39411686 GGTTTGATA
128 GACTTGATA
**
39411695 TGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTCAATCTGTTCTGCT
1 TGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTCAATCTGTTCCACT
* *
39411760 GCGACTTTAGGGAAATAAGATTCGCTATCTTCAGTTTGCTCCAGTGCAACTTCAGGGAGATAAGA
66 GCGACTTTAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCA-TGCAACTTCAGGGAGATAAGA
39411825 CTTGATA
130 CTTGATA
* *
39411832 TGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCCACT
1 TGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTCAATCTGTTCCACT
* * *
39411897 GTGACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCC-TGCAACTTTAGGGAGATAAGAC
66 GCGACTTTAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCATGCAACTTCAGGGAGATAAGAC
39411961 TTG
131 TTG
39411964 TATCTTCAAC
Statistics
Matches: 237, Mismatches: 29, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
135 24 0.10
136 40 0.17
137 138 0.58
138 34 0.14
139 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (136 bp):
TGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTATAGCTTCAATCTGTTCCACT
GCGACTTTAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCATGCAACTTCAGGGAGATAAGAC
TTGATA
Found at i:39412061 original size:89 final size:87
Alignment explanation
Indices: 39411900--39412079 Score: 245
Period size: 89 Copynumber: 2.0 Consensus size: 87
39411890 TTCCACTGTG
* * *
39411900 ACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCTGCAACTTTAGGGAGATAAGACTTGT
1 ACTTCAAGGAAATAAGATTCGCTATCTTTAGTCTGCTACTGCAACTTCAGGGAGATAAGACTTGT
* *
39411965 ATCTTCAACCTGCTCTACTACA
66 ATCTTCAACCTGCCCCACTACA
* * * *
39411987 ACTTCAAGGAGATAAGGTTTGCTATCTTTAGTCTGTTCTACTGTAACTTCAGGGAGATAAGACTT
1 ACTTCAAGGAAATAAGATTCGCTATCTTTAGTCTG--CTACTGCAACTTCAGGGAGATAAGACTT
39412052 GTAAT-TTCAACCTGCCCCACTACA
64 GT-ATCTTCAACCTGCCCCACTACA
39412076 ACTT
1 ACTT
39412080 GAGGGGGGTA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
87 31 0.38
89 48 0.59
90 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (87 bp):
ACTTCAAGGAAATAAGATTCGCTATCTTTAGTCTGCTACTGCAACTTCAGGGAGATAAGACTTGT
ATCTTCAACCTGCCCCACTACA
Found at i:39413033 original size:9 final size:8
Alignment explanation
Indices: 39413015--39413048 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
39413005 TTGGCATCTC
39413015 TTTTTTAT
1 TTTTTTAT
39413023 TTTTCTTAT
1 TTTT-TTAT
39413032 TTTCTTTAT
1 TTT-TTTAT
39413041 TTTTTTAT
1 TTTTTTAT
39413049 GAAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 9 0.38
9 14 0.58
10 1 0.04
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTAT
Found at i:39415735 original size:5 final size:5
Alignment explanation
Indices: 39415725--39415768 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
39415715 TTTCCTTCTT
*
39415725 TAAAA TAAAA TAAAA TAAAA TAAAC T-AAA TAAAA TAATAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAA-AA TAAA
39415769 GAAACTACCT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:39415773 original size:24 final size:24
Alignment explanation
Indices: 39415727--39415775 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
39415717 TCCTTCTTTA
*
39415727 AAATAAAATAAAATAAAATAAACT
1 AAATAAAATAAAATAAAAGAAACT
39415751 AAATAAAATAATAAT-AAAGAAACT
1 AAATAAAATAA-AATAAAAGAAACT
39415775 A
1 A
39415776 CCTCTCAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (24 bp):
AAATAAAATAAAATAAAAGAAACT
Found at i:39429369 original size:15 final size:17
Alignment explanation
Indices: 39429335--39429376 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 17
39429325 TAAATAAATT
*
39429335 ATTAAAAATTCATAAAA
1 ATTAAAAACTCATAAAA
39429352 ATTAAAAACT-AT-AAA
1 ATTAAAAACTCATAAAA
39429367 ATTAAAAACT
1 ATTAAAAACT
39429377 TTTTCAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 13 0.54
16 2 0.08
17 9 0.38
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (17 bp):
ATTAAAAACTCATAAAA
Found at i:39432769 original size:21 final size:21
Alignment explanation
Indices: 39432743--39432793 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
39432733 TACGATTTAG
39432743 GGTTTAGGGGACAAGGGTTGT
1 GGTTTAGGGGACAAGGGTTGT
*
39432764 GGTTTAGGGGATAAGGGTTGT
1 GGTTTAGGGGACAAGGGTTGT
39432785 GGTTTAGGG
1 GGTTTAGGG
39432794 TCTAGGTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.02, G:0.49, T:0.31
Consensus pattern (21 bp):
GGTTTAGGGGACAAGGGTTGT
Found at i:39433492 original size:250 final size:250
Alignment explanation
Indices: 39433107--39433598 Score: 679
Period size: 250 Copynumber: 2.0 Consensus size: 250
39433097 GGCTAAAGGA
* * ** * *
39433107 ATTTGAATTTTAGTGGCGTTTTTAATAAAAATGCCACTGAAGGTATGCTATAGTAGCGTTTTATA
1 ATTTGAAATTTAGTGGCGTTTGTAATAAAAACACCACAGAAGGTATACTATAGTAGCGTTTTATA
*
39433172 TTGAAACGCCACAAATACATAAATGTTTCTCTGTACGAAAACGGCGTCGTTTTCTTAAATGATTT
66 -TGAAACGCCACAAATACATAAATGTTTCTCTGAACGAAAACGGCGTCGTTTTCTTAAATGATTT
* * * *
39433237 GAACTCCTTACTGGCGTTTTTATTTAAAACGCCGCAAAATGTTATCTTTAGCGGCGTTTGGTAT-
130 GAACTCCTTACTGGCGTTTGTATTTAAAACGCCGC-AAATGTAAGCTTTAGCGGCGTTTAGTATG
*
39433301 AGAAACGCCACAAATGTGTATTACAAAATGTTCAGAACGTCACCGTTTCATTACATGG
194 A-AAACGCCACAAATGTGTATTAAAAAATGTTCAGAACGTCACCGTTTCATTACATGG
39433359 ATTTGAAATTTAGTGGCGTTTGT-ATGAAAAACACCACAGAAGGTATAC-AGTAGT-GACGTTTT
1 ATTTGAAATTTAGTGGCGTTTGTAAT-AAAAACACCACAGAAGGTATACTA-TAGTAG-CGTTTT
* * * * * * *
39433421 ATA-GAAACGCCGCAAATCCGTATATGTTTTTGTGAACGAAAACGGCGTCGTTTTCTTGAATGAT
63 ATATGAAACGCCACAAATACATAAATGTTTCTCTGAACGAAAACGGCGTCGTTTTCTTAAATGAT
* * *
39433485 TTGAACTCTTTAGTGGCGTTTGTATTTAAAACGCCGCAACTGTAAGCTTTAGCGGCGTTTAGTAT
128 TTGAACTCCTTACTGGCGTTTGTATTTAAAACGCCGCAAATGTAAGCTTTAGCGGCGTTTAGTAT
* *
39433550 GAAAACGCCACAAATGTGTATTAAAAAATTTTCAGAACGTCGCCGTTTC
193 GAAAACGCCACAAATGTGTATTAAAAAATGTTCAGAACGTCACCGTTTC
39433599 GGTTGAGGAA
Statistics
Matches: 212, Mismatches: 24, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
249 68 0.32
250 88 0.42
251 4 0.02
252 52 0.25
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (250 bp):
ATTTGAAATTTAGTGGCGTTTGTAATAAAAACACCACAGAAGGTATACTATAGTAGCGTTTTATA
TGAAACGCCACAAATACATAAATGTTTCTCTGAACGAAAACGGCGTCGTTTTCTTAAATGATTTG
AACTCCTTACTGGCGTTTGTATTTAAAACGCCGCAAATGTAAGCTTTAGCGGCGTTTAGTATGAA
AACGCCACAAATGTGTATTAAAAAATGTTCAGAACGTCACCGTTTCATTACATGG
Found at i:39434661 original size:22 final size:22
Alignment explanation
Indices: 39434634--39434680 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
39434624 GTCTTTCTAC
39434634 TTAGGTTTAATCAGTAAAAAAT
1 TTAGGTTTAATCAGTAAAAAAT
*
39434656 TTAGGTTTAATCAGTATAAAAT
1 TTAGGTTTAATCAGTAAAAAAT
39434678 TTA
1 TTA
39434681 AGAAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.40
Consensus pattern (22 bp):
TTAGGTTTAATCAGTAAAAAAT
Found at i:39435887 original size:17 final size:18
Alignment explanation
Indices: 39435861--39435894 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
39435851 ACATTTTTAA
39435861 TATATATTTTT-AAAATC
1 TATATATTTTTCAAAATC
*
39435878 TATATTTTTTTCAAAAT
1 TATATATTTTTCAAAAT
39435895 TTATCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATATTTTTCAAAATC
Found at i:39436005 original size:12 final size:12
Alignment explanation
Indices: 39435988--39436012 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
39435978 CATACAATAC
39435988 ATAAACTTGCAT
1 ATAAACTTGCAT
39436000 ATAAACTTGCAT
1 ATAAACTTGCAT
39436012 A
1 A
39436013 ACAATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATAAACTTGCAT
Found at i:39436051 original size:19 final size:19
Alignment explanation
Indices: 39436009--39436052 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
39435999 TATAAACTTG
*
39436009 CATAACAATTTTTAAATTA
1 CATAACAATTTTTAAAGTA
39436028 CATAACAATTTTTAAAGTA
1 CATAACAATTTTTAAAGTA
*
39436047 TATAAC
1 CATAAC
39436053 TTACATAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (19 bp):
CATAACAATTTTTAAAGTA
Found at i:39436062 original size:9 final size:9
Alignment explanation
Indices: 39436048--39436413 Score: 278
Period size: 9 Copynumber: 40.9 Consensus size: 9
39436038 TTTAAAGTAT
39436048 ATAACTTAC
1 ATAACTTAC
39436057 ATAACTTAC
1 ATAACTTAC
*
39436066 ATACCTTAC
1 ATAACTTAC
* *
39436075 ATAAATTAA
1 ATAACTTAC
*
39436084 ATAATTTAC
1 ATAACTTAC
39436093 ATAACTTAC
1 ATAACTTAC
*
39436102 ATAACTTAA
1 ATAACTTAC
39436111 ATAACTTAC
1 ATAACTTAC
39436120 --AACTTAC
1 ATAACTTAC
39436127 ATAA--TAC
1 ATAACTTAC
*
39436134 ATAACTTAA
1 ATAACTTAC
* *
39436143 ATTATTTAC
1 ATAACTTAC
39436152 ATAA--TAC
1 ATAACTTAC
39436159 ATAACTTAGTAC
1 ATAAC-T--TAC
*
39436171 ATAATTTAC
1 ATAACTTAC
39436180 ATAA--TAC
1 ATAACTTAC
39436187 ATAACTTAC
1 ATAACTTAC
** *
39436196 ATTATTTTTTC
1 A-TA-ACTTAC
39436207 -TAAATTGCTTAC
1 AT-AA---CTTAC
* *
39436219 ATAAATTAA
1 ATAACTTAC
39436228 ATAACTTAC
1 ATAACTTAC
39436237 ATAACTTAC
1 ATAACTTAC
* *
39436246 ATAAATTAA
1 ATAACTTAC
39436255 ATAACTTAC
1 ATAACTTAC
39436264 ATAACTTAC
1 ATAACTTAC
*
39436273 ATATCTTAC
1 ATAACTTAC
39436282 ATAACTTAC
1 ATAACTTAC
* *
39436291 ATAAATTAA
1 ATAACTTAC
39436300 ATAACTTAC
1 ATAACTTAC
*
39436309 ATTACTTAC
1 ATAACTTAC
*
39436318 ATAAATTAC
1 ATAACTTAC
39436327 ATAACTTAC
1 ATAACTTAC
39436336 ATAACTTAC
1 ATAACTTAC
39436345 ATAA--TAC
1 ATAACTTAC
39436352 ATAACCTT-C
1 ATAA-CTTAC
*
39436361 CTAACTTAC
1 ATAACTTAC
* *
39436370 ATTA-TTGTC
1 ATAACTT-AC
39436379 -TAA--TAC
1 ATAACTTAC
39436385 ATAACTTAGTAC
1 ATAAC-T--TAC
39436397 ATAACTTAC
1 ATAACTTAC
39436406 ATAACTTA
1 ATAACTTA
39436414 TTTATAGTTA
Statistics
Matches: 283, Mismatches: 45, Indels: 58
0.73 0.12 0.15
Matches are distributed among these distances:
6 1 0.00
7 39 0.14
8 7 0.02
9 206 0.73
10 4 0.01
11 5 0.02
12 20 0.07
13 1 0.00
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (9 bp):
ATAACTTAC
Found at i:39436151 original size:25 final size:25
Alignment explanation
Indices: 39436123--39436202 Score: 115
Period size: 25 Copynumber: 3.1 Consensus size: 25
39436113 AACTTACAAC
39436123 TTACATAATACATAACTTAAATTAT
1 TTACATAATACATAACTTAAATTAT
*
39436148 TTACATAATACATAACTTAGTACATAAT
1 TTACATAATACATAACTTA--A-ATTAT
*
39436176 TTACATAATACATAACTTACATTAT
1 TTACATAATACATAACTTAAATTAT
39436201 TT
1 TT
39436203 TTTCTAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
25 25 0.51
27 1 0.02
28 23 0.47
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.40
Consensus pattern (25 bp):
TTACATAATACATAACTTAAATTAT
Found at i:39436186 original size:28 final size:25
Alignment explanation
Indices: 39436123--39436194 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 25
39436113 AACTTACAAC
*
39436123 TTACATAATACATAACTTAAATTAT
1 TTACATAATACATAACTTAAATAAT
39436148 TTACATAATACATAACTTAGTACATAAT
1 TTACATAATACATAACTTA--A-ATAAT
39436176 TTACATAATACATAACTTA
1 TTACATAATACATAACTTA
39436195 CATTATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
25 19 0.44
27 1 0.02
28 23 0.53
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (25 bp):
TTACATAATACATAACTTAAATAAT
Found at i:39437594 original size:47 final size:47
Alignment explanation
Indices: 39437525--39437620 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
39437515 ACCCTAGGAG
39437525 TGTGAGGCTTGGGCTAGCATCTGATGGATTTAATCCTTTCAAGATCA
1 TGTGAGGCTTGGGCTAGCATCTGATGGATTTAATCCTTTCAAGATCA
39437572 TGTGAGGCTTGGGCTAGCATCTGATGGATTTAATCCTTTCAAGATCA
1 TGTGAGGCTTGGGCTAGCATCTGATGGATTTAATCCTTTCAAGATCA
39437619 TG
1 TG
39437621 AGCACTGCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (47 bp):
TGTGAGGCTTGGGCTAGCATCTGATGGATTTAATCCTTTCAAGATCA
Found at i:39440240 original size:103 final size:104
Alignment explanation
Indices: 39439964--39440333 Score: 582
Period size: 104 Copynumber: 3.6 Consensus size: 104
39439954 TGTATATAAA
** * * *
39439964 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGTCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
**
39440028 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
39440067 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGTTAAGTGCGATATCCACCTTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
39440132 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
39440171 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGATGATGCTAAGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
*
39440236 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCTG
66 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
39440275 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCG
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCG
39440334 ATAACGGTTA
Statistics
Matches: 247, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
103 66 0.27
104 161 0.65
105 20 0.08
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Done.