Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 14 of 196
Found at i:3996722 original size:6 final size:6
Alignment explanation
Indices: 3996703--3996733 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
3996693 TCATAAATTT
3996703 TTTTTA TATTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA
3996734 ACGTTAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:4002673 original size:31 final size:29
Alignment explanation
Indices: 4002620--4002681 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
4002610 TTATAACTTG
*
4002620 TTGTTAATATTTTAATATATAAAATATAAA
1 TTGTAAATATTTTAATATAT-AAATATAAA
*
4002650 TTGTAAATATTTTTAAT-TAATAAATATTAA
1 TTGTAAATA-TTTTAATAT-ATAAATATAAA
4002680 TT
1 TT
4002682 ATTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (29 bp):
TTGTAAATATTTTAATATATAAATATAAA
Found at i:4004347 original size:6 final size:6
Alignment explanation
Indices: 4004338--4004363 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
4004328 TATATATATA
4004338 GTAGTG GTAGTG GTAGTG GTAGTG GT
1 GTAGTG GTAGTG GTAGTG GTAGTG GT
4004364 TCATAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (6 bp):
GTAGTG
Found at i:4004875 original size:21 final size:22
Alignment explanation
Indices: 4004835--4004876 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4004825 AAATTAATCA
*
4004835 TGAAAACTCATTTATCCATAAT
1 TGAAAACTCATTTATACATAAT
4004857 TGAAAACTCA-TTATACATAA
1 TGAAAACTCATTTATACATAA
4004877 ATGTCTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (22 bp):
TGAAAACTCATTTATACATAAT
Found at i:4006375 original size:20 final size:20
Alignment explanation
Indices: 4006350--4006404 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
4006340 TAAAATATAA
4006350 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
*
4006370 ATTTTGAATTTTTAAAAATT
1 ATTTTGAATTTTTATAAATT
*
4006390 ATTTTAAATTTTTAT
1 ATTTTGAATTTTTAT
4006405 TTAGAGAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:4006380 original size:19 final size:19
Alignment explanation
Indices: 4006345--4006404 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
4006335 TTTTTTAAAA
*
4006345 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
4006363 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
* *
4006382 TAAAAATTATTTTAAATTTT
1 TATAAA-TATTTTGAATTTT
4006402 TAT
1 TAT
4006405 TTAGAGAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.19
19 15 0.42
20 14 0.39
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:4008066 original size:18 final size:18
Alignment explanation
Indices: 4008043--4008078 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4008033 AGATTTATCA
4008043 TTTTAGCACGTTAAACTT
1 TTTTAGCACGTTAAACTT
*
4008061 TTTTAGCACGTTGAACTT
1 TTTTAGCACGTTAAACTT
4008079 ACTAAGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (18 bp):
TTTTAGCACGTTAAACTT
Found at i:4008876 original size:20 final size:20
Alignment explanation
Indices: 4008827--4008877 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
4008817 GTGACCCCTG
* *
4008827 TTTTA-CAAATTTTGCATAT
1 TTTTACCAAATTTTCCAAAT
*
4008846 TTTTACTAAATTTTCCAAAT
1 TTTTACCAAATTTTCCAAAT
*
4008866 TTTTCCCAAATT
1 TTTTACCAAATT
4008878 GATTCTAGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (20 bp):
TTTTACCAAATTTTCCAAAT
Found at i:4009390 original size:43 final size:43
Alignment explanation
Indices: 4009335--4009646 Score: 303
Period size: 43 Copynumber: 7.3 Consensus size: 43
4009325 TTTTATAAAT
* * * *
4009335 AAACGCCACTAAAGACCATGACATTTAGCGGCACTTTTTCAAC
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
4009378 AAACGCCGCTAAAGACCAT-AGCCTTTAGCAGCACTTTTCCCAC
1 AAACGCCACTAAAGACCATGA-CCTTTAGCGGCGCTTTTCCCAC
*
4009421 ACACGCCACTAAAGACCATGACCTTTAG-GGCGC-TTTCCCAC
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
4009462 AAACGCCGCTAAAGACCATGACTTTTAGCGGTGCTTTTTCTAT
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
4009505 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
4009548 AAACGCCACTAAAGA-TATTGAGCTTTAGCGGCGCTTTTTCCCGC
1 AAACGCCACTAAAGACCA-TGACCTTTAGCGGCGC-TTTTCCCAC
* * * ** *
4009592 GAACGCCGCTATAGA--ATAGACCTTTAGCGATGCTTTTCACAC
1 AAACGCCACTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCAC
* *
4009634 AAAAGCCGCTAAA
1 AAACGCCACTAAA
4009647 AATATATCTT
Statistics
Matches: 224, Mismatches: 38, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
41 33 0.15
42 27 0.12
43 143 0.64
44 21 0.09
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:4009561 original size:127 final size:129
Alignment explanation
Indices: 4009335--4009646 Score: 377
Period size: 127 Copynumber: 2.4 Consensus size: 129
4009325 TTTTATAAAT
* **
4009335 AAACGCCACTAAAGACCATGACATTTAGCGGCACTTTTTCAACAAACGCCGCTAAAGACCATAGC
1 AAACGCCGCTAAAGACCATGACATTTAGCGGTGCTTTTTCAACAAACGCCGCTAAAGACCATAGC
*
4009400 CTTTAGCAGCACTTTTCCCACACACGCCACTAAAGACCA-TGACCTTTAG-GGCGC-TTTCCCAC
66 CTTTAGCAGCACTTTTCCCACAAACGCCACTAAAGA-CATTGACCTTTAGCGGCGCTTTTCCCAC
* * *
4009462 AAACGCCGCTAAAGACCATGACTTTTAGCGGTGCTTTTTCTATAAACGCCGCTAAAGACCA-AGA
1 AAACGCCGCTAAAGACCATGACATTTAGCGGTGCTTTTTCAACAAACGCCGCTAAAGACCATAG-
* * * * *
4009526 CCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATATTGAGCTTTAGCGGCGCTTTTTCCCG
65 CCTTTAGCAGCACTTTTCCCACAAACGCCACTAAAGACATTGACCTTTAGCGGCGC-TTTTCCCA
4009591 C
129 C
* * * * *
4009592 GAACGCCGCTATAGA--ATAGACCTTTAGCGATGC-TTTTCACACAAAAGCCGCTAAA
1 AAACGCCGCTAAAGACCAT-GACATTTAGCGGTGCTTTTTCA-ACAAACGCCGCTAAA
4009647 AATATATCTT
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
126 3 0.02
127 98 0.62
128 12 0.08
129 26 0.16
130 20 0.13
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (129 bp):
AAACGCCGCTAAAGACCATGACATTTAGCGGTGCTTTTTCAACAAACGCCGCTAAAGACCATAGC
CTTTAGCAGCACTTTTCCCACAAACGCCACTAAAGACATTGACCTTTAGCGGCGCTTTTCCCAC
Found at i:4009987 original size:43 final size:43
Alignment explanation
Indices: 4009921--4010011 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
4009911 ACATATGCAA
* * *
4009921 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
*
4009964 GGTAATAAAATATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
4010007 -GTAAT
1 GGTAAT
4010012 GAACTCAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 5 0.11
43 39 0.89
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (43 bp):
GGTAATAAAATATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:4014064 original size:13 final size:13
Alignment explanation
Indices: 4014046--4014072 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4014036 ATTGTCAATC
4014046 TGTTACATTAATT
1 TGTTACATTAATT
4014059 TGTTACATTAATT
1 TGTTACATTAATT
4014072 T
1 T
4014073 ATTTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (13 bp):
TGTTACATTAATT
Found at i:4014603 original size:21 final size:20
Alignment explanation
Indices: 4014544--4014603 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
4014534 CCCTAAATTA
4014544 CTAACTCTTAACCTCTAACCC
1 CTAACTC-TAACCTCTAACCC
*
4014565 CTAATCTCTAATCTCTAACCC
1 CTAA-CTCTAACCTCTAACCC
*
4014586 CTAACTACTAACCCCTAA
1 CTAACT-CTAACCTCTAA
4014604 ATCTTATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.85
22 3 0.09
ACGTcount: A:0.32, C:0.40, G:0.00, T:0.28
Consensus pattern (20 bp):
CTAACTCTAACCTCTAACCC
Found at i:4014661 original size:7 final size:7
Alignment explanation
Indices: 4014649--4014699 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
4014639 AATCTAGACA
4014649 CTAAACC
1 CTAAACC
4014656 CTAAACC
1 CTAAACC
4014663 CTAAACC
1 CTAAACC
4014670 CT-AACC
1 CTAAACC
*
4014676 C-AAATCT
1 CTAAA-CC
*
4014683 CTAACCC
1 CTAAACC
*
4014690 CTAACCC
1 CTAAACC
4014697 CTA
1 CTA
4014700 CACCTTGTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
6 7 0.18
7 29 0.76
8 2 0.05
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:4014923 original size:14 final size:14
Alignment explanation
Indices: 4014901--4014937 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4014891 AATCTAAATT
4014901 AACCATATACCCTA
1 AACCATATACCCTA
*
4014915 AATCATATACCCTA
1 AACCATATACCCTA
4014929 AACCATATA
1 AACCATATA
4014938 TATTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:4015364 original size:41 final size:41
Alignment explanation
Indices: 4015304--4015585 Score: 415
Period size: 41 Copynumber: 6.9 Consensus size: 41
4015294 TAAAAACGGA
*
4015304 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAG
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
* *
4015345 CATTAGCAGCGCTTCTTCAAAAAAGCCGCTAAAGGCCCGAG
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
* *
4015386 CATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGACCGAG
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
*
4015427 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAA
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
4015468 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
* * * * *
4015509 CATTAGCGACGCTTCTT-AAAAA-ACCGTTAAAAGCCCGAT
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
** * *
4015548 CATTAGCTACACTTCTTGAAAAACGCCGCTAAAGGCCC
1 CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
4015586 TAAAAACTCA
Statistics
Matches: 218, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
39 28 0.13
40 10 0.05
41 180 0.83
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (41 bp):
CATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAG
Found at i:4015690 original size:39 final size:40
Alignment explanation
Indices: 4015621--4015754 Score: 150
Period size: 40 Copynumber: 3.4 Consensus size: 40
4015611 GGGCTTAGGC
** *
4015621 TTTTTA-CGGCGTTTGTCA-AAAAATGTCGCTAATGCTT-A
1 TTTTTAGCGGCGTTT-TCATAAAAGCGCCGCTAATGCTTGA
*
4015659 TTTTTAGCGGCATTTTCCA-AAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTT-CATAAAAGCGCCGCTAATGCTTGA
** *
4015699 CCTTTAGCGGCGTTTTTATAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTCATAAAAGCGCCGCTAATGCTTGA
*
4015739 TTTTTAGTGGCGTTTT
1 TTTTTAGCGGCGTTTT
4015755 TTGTCCAAAC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
38 7 0.09
39 26 0.32
40 48 0.59
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCATAAAAGCGCCGCTAATGCTTGA
Found at i:4019792 original size:30 final size:30
Alignment explanation
Indices: 4019756--4019816 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
4019746 CTTGCGAGCT
*
4019756 TCCCGTTAATAGCTATT-TGGAGCATCTCGA
1 TCCCGTTAATAGCTATTAT-GAGCATCCCGA
4019786 TCCCGTTAATAGCTATTATGAGCATCCCGA
1 TCCCGTTAATAGCTATTATGAGCATCCCGA
4019816 T
1 T
4019817 ATATGGCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (30 bp):
TCCCGTTAATAGCTATTATGAGCATCCCGA
Found at i:4019850 original size:26 final size:26
Alignment explanation
Indices: 4019821--4019888 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
4019811 CCCGATATAT
*
4019821 GGCTCTTCATGAG-TTTTTCGATTAAA
1 GGCTCTTCATGAGCTTCTT-GATTAAA
** *
4019847 GGCTCTTTGTGAGCTTCTTGATTAAT
1 GGCTCTTCATGAGCTTCTTGATTAAA
*
4019873 GGCTCTTC-GGAGCTTC
1 GGCTCTTCATGAGCTTC
4019889 CCGATATGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 7 0.20
26 24 0.69
27 4 0.11
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCTTGATTAAA
Found at i:4019958 original size:24 final size:25
Alignment explanation
Indices: 4019786--4020009 Score: 90
Period size: 24 Copynumber: 9.1 Consensus size: 25
4019776 AGCATCTCGA
* * *
4019786 TCCCGTTAATAGCTATT-ATGAGCA
1 TCCCGTTAATGGCTCTTCATGAGCT
* *
4019810 TCCCGATATATGGCTCTTCATGAGTT
1 TCCCGTTA-ATGGCTCTTCATGAGCT
** * **
4019836 TTTCGATTAAAGGCTCTTTGTGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
** *
4019862 TCTTGATTAATGGCTCTTC-GGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
* * * *
4019887 TCCCGAT-ATGGCTC-ACTTGAACT
1 TCCCGTTAATGGCTCTTCATGAGCT
** *
4019910 TCCCACTATATGGCT-ATC-TGAAGCT
1 TCCCGTTA-ATGGCTCTTCATG-AGCT
4019935 TCCCGTTAATGGCTCTTCA-GAGCT
1 TCCCGTTAATGGCTCTTCATGAGCT
* * * * *
4019959 ACCTGTTATTAGCTC-GCATGAGCT
1 TCCCGTTAATGGCTCTTCATGAGCT
*
4019983 TCTCGATT-ATGGCTCTT-ATGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
4020007 TCC
1 TCC
4020010 TATTATACAG
Statistics
Matches: 145, Mismatches: 42, Indels: 26
0.68 0.20 0.12
Matches are distributed among these distances:
22 1 0.01
23 18 0.12
24 52 0.36
25 36 0.25
26 36 0.25
27 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (25 bp):
TCCCGTTAATGGCTCTTCATGAGCT
Found at i:4019983 original size:48 final size:49
Alignment explanation
Indices: 4019930--4020047 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 49
4019920 TGGCTATCTG
* * *
4019930 AAGCTTCCCGTTAATGGCTCTTCA-GAGCTACCTGTTAT-TAGCTCGCAT
1 AAGCTTCCCGTTAATGGCTCTT-ATGAGCTACCTATTATACAGCTCGAAT
* * *
4019978 GAGCTTCTCGATT-ATGGCTCTTATGAGCTTCCTATTATACAGCTCGAAT
1 AAGCTTCCCG-TTAATGGCTCTTATGAGCTACCTATTATACAGCTCGAAT
4020027 AAGCTTCCCGTTATATGGCTC
1 AAGCTTCCCGTTA-ATGGCTC
4020048 GAGAGAGGGC
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
47 1 0.02
48 31 0.54
49 18 0.32
50 7 0.12
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (49 bp):
AAGCTTCCCGTTAATGGCTCTTATGAGCTACCTATTATACAGCTCGAAT
Found at i:4020245 original size:5 final size:5
Alignment explanation
Indices: 4020235--4020272 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
4020225 ATGAAGTACA
4020235 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATG
4020273 TACATGTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:4023371 original size:21 final size:24
Alignment explanation
Indices: 4023327--4023372 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
4023317 ACTCACCCTA
4023327 TTCTACTTAGAATAAGACATTATT
1 TTCTACTTAGAATAAGACATTATT
*
4023351 TTCTA-TTA-AATAA-ATATTATT
1 TTCTACTTAGAATAAGACATTATT
4023372 T
1 T
4023373 GTATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 3 0.14
24 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (24 bp):
TTCTACTTAGAATAAGACATTATT
Found at i:4023526 original size:20 final size:19
Alignment explanation
Indices: 4023497--4023534 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4023487 AAGTAGTGAG
4023497 AATTTATTTTTTAAGAATA
1 AATTTATTTTTTAAGAATA
*
4023516 AATTATATTTTTTGAGAAT
1 AATT-TATTTTTTAAGAAT
4023535 TACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
AATTTATTTTTTAAGAATA
Found at i:4024799 original size:14 final size:14
Alignment explanation
Indices: 4024782--4024832 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
4024772 TTTTTTTTTT
4024782 AATTTTTAGATTCG
1 AATTTTTAGATTCG
* *
4024796 AATTTTTTGGTTC-
1 AATTTTTAGATTCG
4024809 AGATTAATTTAGATTCG
1 A-ATT--TTTAGATTCG
4024826 AATTTTT
1 AATTTTT
4024833 TCGAGTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 1 0.03
14 17 0.59
16 10 0.34
17 1 0.03
ACGTcount: A:0.27, C:0.06, G:0.14, T:0.53
Consensus pattern (14 bp):
AATTTTTAGATTCG
Found at i:4026806 original size:27 final size:27
Alignment explanation
Indices: 4026737--4027160 Score: 222
Period size: 27 Copynumber: 14.9 Consensus size: 27
4026727 GTTTTTCCAA
* *
4026737 TATTTTCCAGATTTTACACTTTTTGCCCC
1 TATTTTTCAGATTTTACA-ATTTTG-CCC
* * * *
4026766 TATTTTCCAAATTTCACACTTTTGCCC
1 TATTTTTCAGATTTTACAATTTTGCCC
*
4026793 TATTTTTCAGATTTTACAATTTTCCCC
1 TATTTTTCAGATTTTACAATTTTGCCC
* ** * *
4026820 TATTCTAAAGATTTTACAGTTTTGCTCG
1 TATTTTTCAGATTTTACAATTTTGC-CC
* * *
4026848 TATTTTTCAAATTTTATAATTCTTCCCC
1 TATTTTTCAGATTTTACAATT-TTGCCC
* * * *
4026876 TATTTTTTAGATTTTATAGTTTAGCCC
1 TATTTTTCAGATTTTACAATTTTGCCC
** *
4026903 TTATTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCC
1 -TATTTTT--CAGA-TTTT-ACA----AT--TTT-G-CCC
* *
4026943 TATTTTTCAAATTTTACAATTTTATCCAC
1 TATTTTTCAGATTTTACAATTTT-GCC-C
* * * *
4026972 TATTTTTTTAGATTTTATAGTTTTTCCAC
1 TA-TTTTTCAGATTTTACAATTTTGCC-C
* * *
4027001 TTTTTTTTAGATTTTACAATTTTCCCC
1 TATTTTTCAGATTTTACAATTTTGCCC
* * *
4027028 TATTTTTCAGATTTTACAACTTAGCCT
1 TATTTTTCAGATTTTACAATTTTGCCC
*
4027055 TATTTTT-ATATTTTA-AATTTTGCCC
1 TATTTTTCAGATTTTACAATTTTGCCC
* * *
4027080 ATATTTTTCAAATTTTAAAATTTTTCCC
1 -TATTTTTCAGATTTTACAATTTTGCCC
* * *
4027108 TATTTTTTAGATTTTATAGTTTTGCCCC
1 TATTTTTCAGATTTTACAATTTTG-CCC
* * *
4027136 TATTTTTTAAAATTTTACTATTTTG
1 TA-TTTTTCAGATTTTACAATTTTG
4027161 TCCCCTGCTT
Statistics
Matches: 307, Mismatches: 66, Indels: 44
0.74 0.16 0.11
Matches are distributed among these distances:
25 7 0.02
26 14 0.05
27 104 0.34
28 84 0.27
29 49 0.16
30 18 0.06
31 6 0.02
32 3 0.01
35 2 0.01
36 5 0.02
37 2 0.01
38 2 0.01
39 8 0.03
40 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.05, T:0.54
Consensus pattern (27 bp):
TATTTTTCAGATTTTACAATTTTGCCC
Found at i:4026879 original size:28 final size:27
Alignment explanation
Indices: 4026704--4027188 Score: 186
Period size: 27 Copynumber: 17.0 Consensus size: 27
4026694 CAGTCTTGTG
* *
4026704 TCCCCTATTTATT-AAATTTTATAGTTTT
1 TCCCCTATTT-TTCAAATTTTACA-ATTT
** * * *
4026732 TCCAATATTTTCCAGATTTTACACTTTT
1 TCCCCTATTTTTCAAATTTTACA-ATTT
* * *
4026760 TGCCCCTATTTTCCAAATTTCACACTTT
1 T-CCCCTATTTTTCAAATTTTACAATTT
* *
4026788 TGCCCTATTTTTCAGATTTTACAATTT
1 TCCCCTATTTTTCAAATTTTACAATTT
* * *
4026815 TCCCCTA-TTCTAAAGATTTTACAGTTT
1 TCCCCTATTTTTCAA-ATTTTACAATTT
* * *
4026842 TGCTCGTATTTTTCAAATTTTATAATTCT
1 T-CCCCTATTTTTCAAATTTTACAATT-T
* * * *
4026871 TCCCCTATTTTTTAGATTTTATAGTTT
1 TCCCCTATTTTTCAAATTTTACAATTT
* * * *
4026898 AGCCCTTATTTTTCCCCTATTTTTCATATTTTATAGTTT
1 -TCCCCTATTTTT---C-A------A-ATTTTACAATTT
*
4026937 AGCCCCTATTTTTCAAATTTTACAATTTT
1 -TCCCCTATTTTTCAAATTTTACAA-TTT
* * * * *
4026966 ATCCACTATTTTTTTAGATTTTATAGTTTT
1 -TCCCCTA-TTTTTCAAATTTTACA-ATTT
* * * *
4026996 TCCACTTTTTTTTAGATTTTACAATTT
1 TCCCCTATTTTTCAAATTTTACAATTT
* *
4027023 TCCCCTATTTTTCAGATTTTACAACTT
1 TCCCCTATTTTTCAAATTTTACAATTT
** * *
4027050 AGCCTTATTTTT-ATATTTTA-AATTT
1 TCCCCTATTTTTCAAATTTTACAATTT
* *
4027075 TGCCCATATTTTTCAAATTTTAAAATTT
1 T-CCCCTATTTTTCAAATTTTACAATTT
* * * * *
4027103 TTCCCTATTTTTTAGATTTTATAGTTT
1 TCCCCTATTTTTCAAATTTTACAATTT
* *
4027130 TGCCCCTATTTTTTAAAATTTTACTATTTT
1 T-CCCCTA-TTTTTCAAATTTTAC-AATTT
** * *
4027160 GTCCCCTGCTTTACCAATTTTACAATTT
1 -TCCCCTATTTTTCAAATTTTACAATTT
4027188 T
1 T
4027189 ACCCAAAATT
Statistics
Matches: 351, Mismatches: 78, Indels: 57
0.72 0.16 0.12
Matches are distributed among these distances:
25 4 0.01
26 20 0.06
27 105 0.30
28 105 0.30
29 64 0.18
30 25 0.07
31 1 0.00
32 1 0.00
35 1 0.00
36 1 0.00
39 24 0.07
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.53
Consensus pattern (27 bp):
TCCCCTATTTTTCAAATTTTACAATTT
Found at i:4026913 original size:39 final size:39
Alignment explanation
Indices: 4026870--4026950 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
4026860 TTTATAATTC
* *
4026870 TTCCCCTATTTTTTAGATTTTATAGTTTAGCCCTTATTT
1 TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
*
4026909 TTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTT
1 TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
4026948 TTC
1 TTC
4026951 AAATTTTACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.17, C:0.21, G:0.06, T:0.56
Consensus pattern (39 bp):
TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
Found at i:4026917 original size:95 final size:97
Alignment explanation
Indices: 4026812--4026994 Score: 253
Period size: 95 Copynumber: 1.9 Consensus size: 97
4026802 GATTTTACAA
* * * * *
4026812 TTTTCCCCTATTCTAAAGATTTTACAGTTTTGCTCGTATTTTTCAAATTTTATAATTCT-TCCCC
1 TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
4026876 TA-TTTTTTAGATTTTATAGTTTAGCCCTTAT
66 TATTTTTTTAGATTTTATAGTTTAGCCCTTAT
* ** * * *
4026907 TTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACAATTTTATCCAC
1 TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
4026972 TATTTTTTTAGATTTTATAGTTT
66 TATTTTTTTAGATTTTATAGTTT
4026995 TTCCACTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
95 49 0.65
96 6 0.08
97 20 0.27
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.55
Consensus pattern (97 bp):
TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
TATTTTTTTAGATTTTATAGTTTAGCCCTTAT
Found at i:4026979 original size:58 final size:56
Alignment explanation
Indices: 4026905--4027142 Score: 189
Period size: 53 Copynumber: 4.3 Consensus size: 56
4026895 TTTAGCCCTT
* *
4026905 ATTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACA
1 ATTTTTCCCCTATTTTTCAGATTTTATAGTTTAGCCACTATTTTTCAAATTTTACA
* * ** * * *
4026961 ATTTTATCCACTATTTTTTTAGATTTTATAGTTTTTCCACTTTTTTTTAGATTTTACA
1 ATTTT-TCCCCTA-TTTTTCAGATTTTATAGTTTAGCCACTATTTTTCAAATTTTACA
* ** * *
4027019 A-TTTTCCCCTATTTTTCAGATTTTACAACTTAGCC-TTATTTTT-ATATTTTA-A
1 ATTTTTCCCCTATTTTTCAGATTTTATAGTTTAGCCACTATTTTTCAAATTTTACA
* * * * * ** * * *
4027071 ATTTTGCCCATATTTTTCAAATTTTAAAATTTTTCC-CTATTTTTTAGATTTTATA
1 ATTTTTCCCCTATTTTTCAGATTTTATAGTTTAGCCACTATTTTTCAAATTTTACA
* *
4027126 GTTTTGCCCCTATTTTT
1 ATTTTTCCCCTATTTTT
4027143 TAAAATTTTA
Statistics
Matches: 147, Mismatches: 30, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
52 2 0.01
53 41 0.28
54 13 0.09
55 34 0.23
56 11 0.07
57 9 0.06
58 37 0.25
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (56 bp):
ATTTTTCCCCTATTTTTCAGATTTTATAGTTTAGCCACTATTTTTCAAATTTTACA
Found at i:4027085 original size:53 final size:55
Alignment explanation
Indices: 4026905--4027152 Score: 178
Period size: 58 Copynumber: 4.5 Consensus size: 55
4026895 TTTAGCCCTT
* * * ** * *
4026905 ATTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACA
1 ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAG-CCCTATTTTTTAGATTTTACA
* * * * * ** ** *
4026961 ATTTTATCCACTATTTTTTTAGATTTTATAGTTTTTCCACTTTTTTTTAGATTTTACA
1 ATTTT-GCCCCTA-TTTTTCAAATTTTAAAACTTAGCC-CTATTTTTTAGATTTTACA
* * * *
4027019 ATTTT-CCCCTATTTTTCAGATTTTACAACTTAGCCTTA-TTTTTATATTTTA-A
1 ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
* * ** *
4027071 ATTTTGCCCATATTTTTCAAATTTTAAAATTTTTCCCTATTTTTTAGATTTTATA
1 ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
* *
4027126 GTTTTGCCCCTATTTTTTAAAATTTTA
1 ATTTTGCCCCTA-TTTTTCAAATTTTA
4027153 CTATTTTGTC
Statistics
Matches: 156, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
52 6 0.04
53 38 0.24
54 13 0.08
55 29 0.19
56 23 0.15
57 8 0.05
58 39 0.25
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.56
Consensus pattern (55 bp):
ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
Found at i:4028088 original size:26 final size:26
Alignment explanation
Indices: 4028059--4028110 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4028049 TAGAACCCTG
* *
4028059 TATGTGTGAACCCTATAG-GCAAACCT
1 TATGTGAGAACACTAT-GTGCAAACCT
4028085 TATGTGAGAACACTATGTGCAAACCT
1 TATGTGAGAACACTATGTGCAAACCT
4028111 ATTATGCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
TATGTGAGAACACTATGTGCAAACCT
Found at i:4030804 original size:18 final size:19
Alignment explanation
Indices: 4030781--4030823 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
4030771 GTTCAAGGTG
*
4030781 TAATTAATTTAAAATT-TT
1 TAATTAAGTTAAAATTATT
*
4030799 TAATT-AGTTAAATTTATT
1 TAATTAAGTTAAAATTATT
4030817 TAATTAA
1 TAATTAA
4030824 AAACCTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 12 0.57
19 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TAATTAAGTTAAAATTATT
Found at i:4031425 original size:50 final size:51
Alignment explanation
Indices: 4031338--4031434 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 51
4031328 TAAATTTAGT
* * * *
4031338 CCTCAAATTTTACATATTATATCAATTTAGTCATAATTTTA-AAAATGAAC
1 CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATGAAC
*
4031388 CCTCAAAATTTACAAATGATATCAATTT-GATCCTAATTCTAGAAAAT
1 CCTCAAAATTTACAAATGATATCAATTTAG-TCATAATTCTAGAAAAT
4031435 TCAAAGAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
49 1 0.03
50 34 0.85
51 5 0.12
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.37
Consensus pattern (51 bp):
CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATGAAC
Found at i:4031518 original size:25 final size:24
Alignment explanation
Indices: 4031490--4031550 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
4031480 TAAAAAAATT
4031490 AAAAAATA-AAAACAATAAATTTTCA
1 AAAAAATATAAAACAATAAA-TTT-A
* *
4031515 AAAAAA-ATATAATAATAAATTTA
1 AAAAAATATAAAACAATAAATTTA
*
4031538 AAAAAATGTAAAA
1 AAAAAATATAAAA
4031551 ATAGAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 7 0.23
24 8 0.27
25 15 0.50
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (24 bp):
AAAAAATATAAAACAATAAATTTA
Found at i:4031643 original size:24 final size:23
Alignment explanation
Indices: 4031574--4031644 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
4031564 TTGTTGACAA
*
4031574 GAAATAATAATATATAAAATTTT
1 GAAATAATAATAAATAAAATTTT
* *
4031597 CAAATATATAA-AAACAAATATTTT
1 GAAATA-ATAATAAATAAA-ATTTT
*
4031621 GAAATAATAATAAATTTAAATTTT
1 GAAATAATAATAAA-TAAAATTTT
4031645 ATATTAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
23 14 0.37
24 22 0.58
25 2 0.05
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (23 bp):
GAAATAATAATAAATAAAATTTT
Found at i:4035258 original size:35 final size:35
Alignment explanation
Indices: 4035212--4035283 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
4035202 TTCACAAAAG
4035212 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
1 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
*
4035247 ATAGTTGACATTTAATACTTCTAAAGACATCGTTT
1 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
4035282 AT
1 AT
4035284 TTAACTCTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (35 bp):
ATAGTTGACATTTAATACTTCTAAAGACATCATTT
Found at i:4046862 original size:17 final size:17
Alignment explanation
Indices: 4046828--4046859 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4046818 TAAATATTAA
4046828 TTAATTAAAATAATTTC
1 TTAATTAAAATAATTTC
4046845 TTAATT-AAATAATTT
1 TTAATTAAAATAATTT
4046860 TCTCAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAATAATTTC
Found at i:4050378 original size:125 final size:125
Alignment explanation
Indices: 4050155--4050408 Score: 454
Period size: 125 Copynumber: 2.0 Consensus size: 125
4050145 TAAATGGATA
*
4050155 AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTGTTCAAATGGGCAAACCCTTCTATTTA
1 AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
* *
4050220 TAGTACTTTCCTCGCCAAGCAAACATGTTAAGTTGGGCGTTGGCCACATGTCTTCTTGTG
66 TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTTGTG
* *
4050280 AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCTTTTTATTTA
1 AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
*
4050345 TAGTACTTTCCTTGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTTGTG
66 TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTTGTG
4050405 AGAT
1 AGAT
4050409 GATGGGAAAT
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 123 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (125 bp):
AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTTGTG
Found at i:4051640 original size:102 final size:102
Alignment explanation
Indices: 4051464--4051771 Score: 616
Period size: 102 Copynumber: 3.0 Consensus size: 102
4051454 AATTATTCAA
4051464 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
1 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
4051529 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
66 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
4051566 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
1 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
4051631 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
66 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
4051668 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
1 TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
4051733 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
66 GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
4051770 TT
1 TT
4051772 ACCCAACTCA
Statistics
Matches: 206, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 206 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30
Consensus pattern (102 bp):
TTTGTTACTATTAGTTAACCTAGGTGATAGATAGGTTAATGAAAATATCATAGAAGAATGCAACA
GAACGTTGACTTAACCTTAGCAAACCCCATTCAATAG
Found at i:4053838 original size:29 final size:30
Alignment explanation
Indices: 4053779--4053840 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
4053769 CTTAAATAAA
* ***
4053779 AAAATTTAAATAATTTAGTGATCATCTTAT
1 AAAATTTAAATAATTGAGTGATCAAAATAT
*
4053809 AAAATTTTAA-AATTGAGTGATCAAAATAT
1 AAAATTTAAATAATTGAGTGATCAAAATAT
4053838 AAA
1 AAA
4053841 CTTAGTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (30 bp):
AAAATTTAAATAATTGAGTGATCAAAATAT
Found at i:4063117 original size:21 final size:22
Alignment explanation
Indices: 4063091--4063139 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
4063081 GAAATAAAAC
* **
4063091 AAAAAAA-GTAAAATCTTCTCT
1 AAAAAAAGGTAAAACCTAATCT
4063112 AAAAAAAGGTAAAACCTAATCT
1 AAAAAAAGGTAAAACCTAATCT
4063134 AAAAAA
1 AAAAAA
4063140 TGAAAAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.20
Consensus pattern (22 bp):
AAAAAAAGGTAAAACCTAATCT
Found at i:4064687 original size:24 final size:24
Alignment explanation
Indices: 4064637--4064697 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
4064627 CTTTCTCGAA
* *
4064637 CCATATAACGGGAAGCTCATGTCAG
1 CCAT-TAACGAGAAGCTCATGACAG
4064662 CCATTAACGAGAAGCTCAT-ACGAG
1 CCATTAACGAGAAGCTCATGAC-AG
*
4064686 CCAATAAC-AGAA
1 CCATTAACGAGAA
4064698 AGGTTCAAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 5 0.16
24 23 0.72
25 4 0.12
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (24 bp):
CCATTAACGAGAAGCTCATGACAG
Found at i:4068243 original size:29 final size:28
Alignment explanation
Indices: 4068211--4068276 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 28
4068201 ACTTATTAGC
* *
4068211 ATAAAAATAA-TATTCAATTATTTTATC
1 ATAAAAATAAGTATTCAATAATTTTATT
*
4068238 ATATAAAATCAAGTGTTCAATAATTTTATT
1 ATA-AAAAT-AAGTATTCAATAATTTTATT
4068268 ATAAAAATA
1 ATAAAAATA
4068277 TAACATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 3 0.09
28 6 0.18
29 7 0.21
30 17 0.52
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAAAATAAGTATTCAATAATTTTATT
Found at i:4068596 original size:30 final size:31
Alignment explanation
Indices: 4068560--4068625 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 31
4068550 AATAGTTTTT
4068560 ATTTTTATAAATTTTAAA-AAATTAAAATA-A
1 ATTTTTATAAATTTTAAAGAAA-TAAAATATA
*
4068590 ATTTTTATTAATTTTAAAGAAATAAAATATA
1 ATTTTTATAAATTTTAAAGAAATAAAATATA
4068621 ATTTT
1 ATTTT
4068626 ATTATTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (31 bp):
ATTTTTATAAATTTTAAAGAAATAAAATATA
Found at i:4068634 original size:36 final size:34
Alignment explanation
Indices: 4068556--4068643 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 34
4068546 TTTTAATAGT
*
4068556 TTTTATTTTTATAAATTTTAAAAAATTAAAATAAA
1 TTTTA-TTTTATTAATTTTAAAAAATTAAAATAAA
4068591 ---T-TTTTATTAATTTTAAAGAAA-TAAAATATAA
1 TTTTATTTTATTAATTTTAAA-AAATTAAAATA-AA
4068622 TTTTATTATTATTAA-TTTAAAA
1 TTTTATT-TTATTAATTTTAAAA
4068644 TTTTATAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
30 22 0.49
31 5 0.11
32 1 0.02
34 2 0.04
35 8 0.18
36 7 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (34 bp):
TTTTATTTTATTAATTTTAAAAAATTAAAATAAA
Found at i:4082127 original size:7 final size:7
Alignment explanation
Indices: 4082062--4082121 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
4082052 AAAGTTAAAA
4082062 TATATAT
1 TATATAT
4082069 TATAATAT
1 TAT-ATAT
4082077 TATAATAT
1 TAT-ATAT
*
4082085 TATATCT
1 TATATAT
*
4082092 TA-ATGT
1 TATATAT
*
4082098 T-TA-AG
1 TATATAT
4082103 TATATAT
1 TATATAT
4082110 TATATAT
1 TATATAT
4082117 TATAT
1 TATAT
4082122 TATATAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
5 1 0.02
6 7 0.16
7 21 0.48
8 15 0.34
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (7 bp):
TATATAT
Found at i:4083241 original size:40 final size:40
Alignment explanation
Indices: 4083119--4083257 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
4083109 ACTTCGAGTC
* *
4083119 GATGAGACACTGGGTGTCAATTTACTACTTC-AGATTAAT-T
1 GATGAGACACTGGGTGTCAAATTATTACTTCGA-ATT-ATCT
* * * ** * *
4083159 CGATGAGGCATTGGGTG-CCAA-T-TTACTTCGGTTTAACC
1 -GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
4083197 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
1 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
* *
4083237 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGTCAAA
4083258 CTGGTGTGTT
Statistics
Matches: 75, Mismatches: 18, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
37 15 0.20
38 11 0.15
39 2 0.03
40 33 0.44
41 14 0.19
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
Found at i:4085129 original size:14 final size:15
Alignment explanation
Indices: 4085104--4085133 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4085094 TTCCTTTTTT
4085104 TTATACTAACTATTA
1 TTATACTAACTATTA
4085119 TTATA-TAACTATTA
1 TTATACTAACTATTA
4085133 T
1 T
4085134 CATTATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATACTAACTATTA
Found at i:4085638 original size:31 final size:32
Alignment explanation
Indices: 4085594--4085655 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
4085584 ATTTATTATG
4085594 TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
1 TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
* *
4085626 TGTG-ACAGTTTAAGCTCGTGCCTAGGAGCA
1 TGTGAACAATTTAAGCTCGTGACTAGGAGCA
4085656 TTTTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 24 0.86
32 4 0.14
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (32 bp):
TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
Found at i:4086040 original size:27 final size:28
Alignment explanation
Indices: 4085998--4086056 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
4085988 ATCGACTTGT
4085998 TCAAGTCGCTTAATATTTGACAACTG-A
1 TCAAGTCGCTTAATATTTGACAACTGAA
*
4086025 TCAAGTCGCTTCATATTTGACAACTGAA
1 TCAAGTCGCTTAATATTTGACAACTGAA
4086053 TCAA
1 TCAA
4086057 CTTAGGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (28 bp):
TCAAGTCGCTTAATATTTGACAACTGAA
Found at i:4091444 original size:47 final size:45
Alignment explanation
Indices: 4091393--4091560 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
4091383 TATTTAATAT
*
4091393 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
4091440 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
4091484 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
4091531 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
4091561 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:4091466 original size:91 final size:91
Alignment explanation
Indices: 4091319--4091526 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
4091309 TTGATTTTAG
* *
4091319 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
4091384 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
4091411 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
4091476 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
4091502 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
4091527 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:4091487 original size:44 final size:43
Alignment explanation
Indices: 4091340--4091501 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
4091330 AAGAACATTT
* * *
4091340 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
4091383 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
4091428 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
4091474 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
4091502 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:4091501 original size:26 final size:28
Alignment explanation
Indices: 4091339--4091415 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
4091329 TAAGAACATT
* *
4091339 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
4091369 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
4091396 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
4091416 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:4091708 original size:25 final size:26
Alignment explanation
Indices: 4091676--4091730 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
4091666 TTATTAAATT
*
4091676 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
4091701 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
4091726 A-ATAT
1 ATATAT
4091731 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:4091897 original size:39 final size:40
Alignment explanation
Indices: 4091854--4091958 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
4091844 TTCCATTATG
4091854 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
4091893 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
4091938 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
4091959 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:4091952 original size:45 final size:44
Alignment explanation
Indices: 4091852--4091961 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
4091842 TTTTCCATTA
4091852 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
4091891 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
4091936 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
4091962 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:4091961 original size:16 final size:16
Alignment explanation
Indices: 4091940--4091977 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
4091930 TTGATTTGCT
*
4091940 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
4091956 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
4091972 AATACA
1 ATTACA
4091978 GCGAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:4104434 original size:123 final size:123
Alignment explanation
Indices: 4104215--4104464 Score: 482
Period size: 123 Copynumber: 2.0 Consensus size: 123
4104205 GCAAAAAGAA
* *
4104215 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCTTAATCTGTACAATATTAGTTTCGATC
1 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
4104280 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
66 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
4104338 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
1 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
4104403 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
66 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
4104461 TTAG
1 TTAG
4104465 TGTATTAACA
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (123 bp):
TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
Found at i:4107479 original size:19 final size:19
Alignment explanation
Indices: 4107432--4107482 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
4107422 TATGGATGTT
*
4107432 TTTAATAATTTTTAGTAAG
1 TTTAATAATTTTTAGTAAA
*
4107451 TTCAAT-ATTTTTA-TAAA
1 TTTAATAATTTTTAGTAAA
4107468 TCTTAATAATTTTTA
1 T-TTAATAATTTTTA
4107483 AATAATTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.15
18 11 0.41
19 12 0.44
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTAATAATTTTTAGTAAA
Found at i:4111538 original size:27 final size:27
Alignment explanation
Indices: 4111485--4111540 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
4111475 ATCTACATAC
*
4111485 ACCATTAAAAAAACTATTGAGGCATCA
1 ACCATTAAAAAAACTAGTGAGGCATCA
4111512 ACCATTCAAAAAAAC-AGTGATGG-ATCA
1 ACCATT-AAAAAAACTAGTGA-GGCATCA
4111539 AC
1 AC
4111541 TTTAAAAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (27 bp):
ACCATTAAAAAAACTAGTGAGGCATCA
Found at i:4120941 original size:22 final size:21
Alignment explanation
Indices: 4120903--4120945 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
4120893 TAATTTAAAT
*
4120903 AAATTATTACATTTAAAATTA
1 AAATTATTAAATTTAAAATTA
4120924 AAATTATTATAATTTAAAATTA
1 AAATTATTA-AATTTAAAATTA
4120946 TTTAAATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTATTAAATTTAAAATTA
Found at i:4131826 original size:13 final size:13
Alignment explanation
Indices: 4131808--4131833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4131798 GTTTAACCAG
4131808 TTCAAAACACAAT
1 TTCAAAACACAAT
4131821 TTCAAAACACAAT
1 TTCAAAACACAAT
4131834 CAAACACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
TTCAAAACACAAT
Found at i:4131921 original size:13 final size:13
Alignment explanation
Indices: 4131903--4131943 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4131893 TTGGTACCAC
4131903 AATTATATCATCA
1 AATTATATCATCA
*
4131916 AATTATATTATCA
1 AATTATATCATCA
4131929 AA--ATATCATTCA
1 AATTATATCA-TCA
4131941 AAT
1 AAT
4131944 CCAAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 5 0.21
12 5 0.21
13 14 0.58
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
AATTATATCATCA
Found at i:4132824 original size:2 final size:2
Alignment explanation
Indices: 4132817--4132847 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4132807 ATCATATTTG
4132817 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
4132848 GCATAAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:4133538 original size:18 final size:18
Alignment explanation
Indices: 4133497--4133541 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
4133487 TTCGTTTTGG
* *
4133497 TTTTCTATTTTTTTCTAT
1 TTTTTTATTTTATTCTAT
4133515 TTTTTTATTTTATT-TAT
1 TTTTTTATTTTATTCTAT
4133532 TTGTTTTATT
1 TT-TTTTATT
4133542 ATAATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTTTATTTTATTCTAT
Found at i:4138900 original size:10 final size:10
Alignment explanation
Indices: 4138863--4138913 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
4138853 AGCAATTTAA
4138863 TTTTTTTCTT
1 TTTTTTTCTT
* *
4138873 TTATGTTCTT
1 TTTTTTTCTT
4138883 TTAATTTTTCTT
1 TT--TTTTTCTT
4138895 TTTTTTTCTT
1 TTTTTTTCTT
4138905 TCTTTTTTC
1 T-TTTTTTC
4138914 ATTCTCTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 19 0.56
11 7 0.21
12 8 0.24
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:4138912 original size:22 final size:21
Alignment explanation
Indices: 4138863--4138913 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
4138853 AGCAATTTAA
4138863 TTTTTTTCTTTTATGTTCTTT
1 TTTTTTTCTTTTATGTTCTTT
* * *
4138884 TAATTTTTCTTTTTTTTTCTTT
1 T-TTTTTTCTTTTATGTTCTTT
*
4138906 CTTTTTTC
1 TTTTTTTC
4138914 ATTCTCTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTTTTCTTTTATGTTCTTT
Found at i:4139418 original size:31 final size:29
Alignment explanation
Indices: 4139346--4139419 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
4139336 ACAACATGTT
* *
4139346 AACATAAGTGACTAAAACGTAATATTTTA
1 AACATAAGTGATTAAAACGTAATATTGTA
* *
4139375 AATATAAGTGATTAAAATGTAATATGTGGTA
1 AACATAAGTGATTAAAACGTAATAT-T-GTA
*
4139406 AACAAAAGTGATTA
1 AACATAAGTGATTA
4139420 TTTTAACAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 22 0.59
30 1 0.03
31 14 0.38
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (29 bp):
AACATAAGTGATTAAAACGTAATATTGTA
Found at i:4144775 original size:21 final size:21
Alignment explanation
Indices: 4144763--4144806 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4144753 TTTTAAATTT
4144763 TTTTTAACATTTTTAATTATG
1 TTTTTAACATTTTTAATTATG
*
4144784 TTTTTAACAATTTATAATT-TG
1 TTTTTAAC-ATTTTTAATTATG
4144805 TT
1 TT
4144807 GGTAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTTTAACATTTTTAATTATG
Found at i:4151725 original size:13 final size:13
Alignment explanation
Indices: 4151707--4151731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4151697 TATTTTAATA
4151707 TTATTTTGTGTGT
1 TTATTTTGTGTGT
4151720 TTATTTTGTGTG
1 TTATTTTGTGTG
4151732 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:4153351 original size:41 final size:40
Alignment explanation
Indices: 4153306--4153577 Score: 336
Period size: 41 Copynumber: 6.7 Consensus size: 40
4153296 CGGACGTTAC
4153306 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
4153347 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
4153388 GTCTAGTAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
*
4153429 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
4153470 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
4153511 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* **
4153552 GCCTAGCAGGCAAAATGCCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
4153578 CTGTTTAAAT
Statistics
Matches: 207, Mismatches: 13, Indels: 23
0.85 0.05 0.09
Matches are distributed among these distances:
39 5 0.02
40 7 0.03
41 187 0.90
42 2 0.01
43 5 0.02
44 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:4153530 original size:123 final size:123
Alignment explanation
Indices: 4153306--4153576 Score: 397
Period size: 123 Copynumber: 2.2 Consensus size: 123
4153296 CGGACGTTAC
4153306 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* * *
4153371 TACATTTCAGACTTTAAGTCTAGTAGGCTTAATGCCGGTGATA-T-ATTTCAGACTTTAA
66 TACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTG-TACTGA-ATCAGACTTTAA
*
4153429 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
4153493 ATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTGTACTGAATCAGGCTTTAA
65 ATACATTTCAGACTATAAGTCTAGCAGGCTTAA-TGCCGGTGTACTGAATCAGACTTTAA
* **
4153552 GCCTAGCAGGCAAAATGCCGGTGAA
1 GTCTAGCAGGCTTAATGCCGGTGAA
4153577 TCTGTTTAAA
Statistics
Matches: 135, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
122 6 0.04
123 127 0.94
124 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGTACTGAATCAGACTTTAA
Found at i:4158635 original size:16 final size:17
Alignment explanation
Indices: 4158596--4158642 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
4158586 TTTTATATTT
4158596 TATTTTGATAATTTTTA
1 TATTTTGATAATTTTTA
*
4158613 -ATTTTTG-TACTTTTTA
1 TA-TTTTGATAATTTTTA
4158629 TATTTTGA-AATTTT
1 TATTTTGATAATTTT
4158643 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (17 bp):
TATTTTGATAATTTTTA
Found at i:4158651 original size:17 final size:18
Alignment explanation
Indices: 4158626--4158660 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4158616 TTTGTACTTT
*
4158626 TTATATTTTGAAATTTTA
1 TTATATTTTAAAATTTTA
4158644 TTAT-TTTTAAAATTTTA
1 TTATATTTTAAAATTTTA
4158661 CATCTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATATTTTAAAATTTTA
Found at i:4164704 original size:52 final size:52
Alignment explanation
Indices: 4164625--4164728 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
4164615 TTAATAGATA
*
4164625 GCCAATGAGCTCTGGATAGCCATGGATAACATAAGTTCTGAAAATATTTTGT
1 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
4164677 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
1 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
4164729 TGTAGCTGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (52 bp):
GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
Found at i:4166818 original size:3 final size:3
Alignment explanation
Indices: 4166810--4166835 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4166800 TATGGTTTGC
4166810 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
4166836 TTTCCCCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:4188238 original size:98 final size:99
Alignment explanation
Indices: 4188102--4188370 Score: 282
Period size: 98 Copynumber: 2.7 Consensus size: 99
4188092 ACAACCAAGG
* * * * * *
4188102 TGGTAGAGCCATTCTTTATAGCTCCACCAAAATAAAATATCATTTTTAAAATGTTTAGATTAAAA
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAAT-ATTAAATT-AAA
* *
4188167 AACCAACACA-TTT-AAAAAAA-CCAT-ACAGTACAC
64 AA-CAACACATTTTAAAAAAAATACATAACAATACAC
* *
4188200 TGGTGGCGCCATTCTATATGGCTCCACCAAAAAAAAATATTA-TTTTAAAATATTAAATTAAAAA
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAATATTAAATTAAAAA
* * * * *
4188264 TAATACATTTTAAAAAAAATATATACACAATATAT
66 CAACACATTTTAAAAAAAATACATA-ACAATACAC
*
4188299 TGGTAGCGCCATTCTATATGGCTCCACC-AAATAAAATATTATTTTTAAAAAAATTTAAATTAAT
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTT-AAAATA-TTAAATTAA-
4188363 AAA-AACAC
63 AAACAACAC
4188371 GTTTAAGAAA
Statistics
Matches: 143, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
94 5 0.03
95 8 0.06
96 13 0.09
97 11 0.08
98 48 0.34
99 37 0.26
100 5 0.03
101 13 0.09
102 3 0.02
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (99 bp):
TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAATATTAAATTAAAAA
CAACACATTTTAAAAAAAATACATAACAATACAC
Found at i:4189095 original size:22 final size:21
Alignment explanation
Indices: 4189070--4189113 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
4189060 CAATTTTAGT
4189070 TTTTAATATTT-ATTTTTTGTTA
1 TTTTAAT-TTTAATTTTTT-TTA
*
4189092 TTTTGATTTTAATTTTTTTTA
1 TTTTAATTTTAATTTTTTTTA
4189113 T
1 T
4189114 CACTTTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (21 bp):
TTTTAATTTTAATTTTTTTTA
Found at i:4189235 original size:20 final size:20
Alignment explanation
Indices: 4189180--4189239 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
4189170 TCTTGATATG
*
4189180 TAATTTTTTTTTAAAATT-A
1 TAATTTTTTTTTAAATTTAA
*
4189199 TGATTTTTTATTT---TTTAA
1 TAATTTTTT-TTTAAATTTAA
4189217 TAATTTTTTTTTAAATTTAA
1 TAATTTTTTTTTAAATTTAA
4189237 TAA
1 TAA
4189240 AACATACACA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
17 5 0.15
18 9 0.27
19 8 0.24
20 11 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TAATTTTTTTTTAAATTTAA
Found at i:4192766 original size:30 final size:30
Alignment explanation
Indices: 4192730--4193548 Score: 1143
Period size: 30 Copynumber: 27.2 Consensus size: 30
4192720 ATGTCATGTT
4192730 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192760 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4192790 ATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192819 ATTAGG-TAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4192848 ATTAGATTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4192878 ATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
**
4192907 ATTAGGTTAGGGTTTAGTATTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192937 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192967 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192997 ATTAGGTTAGGGTTTAAGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTA--G-----GGTTTAGGGTTTTTAATTAA
4193034 ATTAGGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193063 ATTAGGTTAAGGTTTAGGG--TTAAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193091 GTTAGGGTTAGGGTTTAGGG-------TTAA
1 ATTA-GGTTAGGGTTTAGGGTTTTTAATTAA
*
4193115 ATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193144 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193174 ATTAGGTTAGGGTTTAAGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193204 ATTAGGTTAGGG-TTAGGGTTTTTAATTAAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATT-AA
4193234 TTAGGTTAGGGTTTAGGGTTTAGGGTTTTTAATTAA
1 --A--TTA-GG-TTAGGGTTTAGGGTTTTTAATTAA
* *
4193270 ATTAGGTTAGGGTTTATGGTCTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193300 ATTAGGTTAGGGTTAAGGGTTTTTAATTAAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATT-AA
*
4193331 TTAGGTTAGGGTTAGGGTTTAGGTTTTTTAATTAA
1 --A--TTA-GGTTAGGGTTTAGGGTTTTTAATTAA
*
4193366 ATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193395 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193425 ATTAGGTTATGATTTAGGG-TTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193454 ATTAGGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193483 ATTAGGTTAGGGTTTACGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193513 ATTAGGTTAGGGTTTACGATTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193543 ATTAGG
1 ATTAGG
4193549 ATTTTTATTA
Statistics
Matches: 717, Mismatches: 35, Indels: 74
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.01
23 7 0.01
24 7 0.01
28 22 0.03
29 212 0.30
30 363 0.51
31 7 0.01
32 5 0.01
33 2 0.00
34 4 0.01
35 8 0.01
36 30 0.04
37 44 0.06
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (30 bp):
ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
Found at i:4192865 original size:59 final size:60
Alignment explanation
Indices: 4192730--4193548 Score: 1143
Period size: 59 Copynumber: 13.6 Consensus size: 60
4192720 ATGTCATGTT
4192730 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4192790 ATTAAGTTAGGG-TTAGGGTTTTTAATTAAATTAGG-TAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4192848 ATTAGATTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
**
4192907 ATTAGGTTAGGGTTTAGTATTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4192967 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTAGGGTTTTTAATT
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTA--G-----GGTTTAGGGTTTTTAATT
4193032 AA
59 AA
* *
4193034 ATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAAGGTTTAGGG--TTAAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193091 GTTAGGGTTAGGGTTTAGGG-------TTAAATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTA-GGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193144 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4193204 ATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTAGGGTTTTTAATT
1 ATTAGGTTAGGGTTTAGGGTTTTTAATT-AA--A--TTA-GG-TTAGGGTTTAGGGTTTTTAATT
4193268 AA
59 AA
* * *
4193270 ATTAGGTTAGGGTTTATGGTCTTTAATTAAATTAGGTTAGGGTTAAGGGTTTTTAATTAAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATT-AA
* *
4193331 TTAGGTTAGGGTTAGGGTTTAGGTTTTTTAATTAAATTAAGTTAGGG-TTAGGGTTTTTAATTAA
1 --A--TTA-GGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193395 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTATGATTTAGGG-TTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4193454 ATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTACGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4193513 ATTAGGTTAGGGTTTACGATTTTTAATTAAATTAGG
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGG
4193549 ATTTTTATTA
Statistics
Matches: 683, Mismatches: 37, Indels: 78
0.86 0.05 0.10
Matches are distributed among these distances:
51 6 0.01
52 29 0.04
53 11 0.02
57 11 0.02
58 74 0.11
59 223 0.33
60 151 0.22
61 4 0.01
62 6 0.01
63 1 0.00
64 6 0.01
65 19 0.03
66 97 0.14
67 45 0.07
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (60 bp):
ATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAA
Found at i:4193097 original size:16 final size:16
Alignment explanation
Indices: 4193076--4193129 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
4193066 AGGTTAAGGT
4193076 TTAGGGTTAAATTAAG
1 TTAGGGTTAAATTAAG
***
4193092 TTAGGGTTAGGGT---
1 TTAGGGTTAAATTAAG
4193105 TTAGGGTTAAATTAAG
1 TTAGGGTTAAATTAAG
4193121 TTAGGGTTA
1 TTAGGGTTA
4193130 GGGTTTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
13 10 0.34
16 19 0.66
ACGTcount: A:0.30, C:0.00, G:0.31, T:0.39
Consensus pattern (16 bp):
TTAGGGTTAAATTAAG
Found at i:4193187 original size:23 final size:24
Alignment explanation
Indices: 4193017--4193247 Score: 124
Period size: 29 Copynumber: 8.4 Consensus size: 24
4193007 GGTTTAAGGT
4193017 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATT-AA--A--TTAGGG
4193046 TTAGGGTTTTTAATTAAATTA-GG
1 TTAGGGTTTTTAATTAAATTAGGG
* *
4193069 TTAAGGTTTAGGGTTAAATTAAGTTAGGG
1 TTAGGGTTT----TT-AATTAAATTAGGG
*
4193098 TTAGGGTTTAGGGTTAAATTAAGTTAGGG
1 TTAGGGTTT----TT-AATTAAATTAGGG
4193127 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATT-AA--A--TTAGGG
4193156 TTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 -TTAGGGTTTTTAATT-AA--A--TTAGGG
*
4193186 TTTAAGGTTTTTAATTAAATTAGGTTAGGG
1 -TTAGGGTTTTTAATT-AA--A--TTAGGG
4193216 TTAGGGTTTTTAATTAAATTA-GG
1 TTAGGGTTTTTAATTAAATTAGGG
4193239 TTAGGGTTT
1 TTAGGGTTT
4193248 AGGGTTTAGG
Statistics
Matches: 184, Mismatches: 6, Indels: 30
0.84 0.03 0.14
Matches are distributed among these distances:
23 21 0.11
24 10 0.05
25 4 0.02
26 2 0.01
27 2 0.01
28 13 0.07
29 74 0.40
30 58 0.32
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (24 bp):
TTAGGGTTTTTAATTAAATTAGGG
Found at i:4193406 original size:23 final size:24
Alignment explanation
Indices: 4193365--4193497 Score: 90
Period size: 29 Copynumber: 4.9 Consensus size: 24
4193355 TTTTTAATTA
*
4193365 AATTAAGTTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
4193389 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATT-AA--A--TTAGGG-TTAGGGTTTTT
4193419 AATTAAATTAGGTTATGATTTAGGG-TTTT
1 AATTAAATTAGG----G--TTAGGGTTTTT
4193448 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
4193477 AATTAAATTA-GGTTAGGGTTT
1 AATTAAATTAGGGTTAGGGTTT
4193498 ACGGTTTTTA
Statistics
Matches: 91, Mismatches: 1, Indels: 35
0.72 0.01 0.28
Matches are distributed among these distances:
23 11 0.12
24 7 0.08
25 7 0.08
26 1 0.01
27 1 0.01
28 8 0.09
29 25 0.27
30 25 0.27
32 1 0.01
34 5 0.05
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (24 bp):
AATTAAATTAGGGTTAGGGTTTTT
Found at i:4194765 original size:7 final size:7
Alignment explanation
Indices: 4194749--4194786 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
4194739 TATTAGTTAT
*
4194749 ATACATA
1 ATACAAA
4194756 ATACAAA
1 ATACAAA
4194763 ATACAAA
1 ATACAAA
4194770 ATACAAA
1 ATACAAA
*
4194777 ATACTAA
1 ATACAAA
4194784 ATA
1 ATA
4194787 TCAATCCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (7 bp):
ATACAAA
Found at i:4195772 original size:25 final size:25
Alignment explanation
Indices: 4195722--4195777 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
4195712 CTTTTATAAC
*
4195722 AAATAATAAATTAATAATTATCTAA
1 AAATAATAAATTAATAAATATCTAA
*
4195747 AAATACATAAA-TAA-AAATATCT-T
1 AAATA-ATAAATTAATAAATATCTAA
4195770 AAATAATA
1 AAATAATA
4195778 TTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 3 0.11
23 5 0.18
24 7 0.25
25 8 0.29
26 5 0.18
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (25 bp):
AAATAATAAATTAATAAATATCTAA
Found at i:4195887 original size:10 final size:10
Alignment explanation
Indices: 4195868--4195934 Score: 62
Period size: 10 Copynumber: 6.6 Consensus size: 10
4195858 GCCATTGATG
*
4195868 AAAATATAAA
1 AAAATTTAAA
4195878 AAAATTTAAA
1 AAAATTTAAA
* *
4195888 ATTATTTTAAA
1 A-AAATTTAAA
*
4195899 AAAATATAAA
1 AAAATTTAAA
4195909 AAAATTTAAA
1 AAAATTTAAA
** *
4195919 TTATTTTAAA
1 AAAATTTAAA
4195929 AAAATT
1 AAAATT
4195935 AAATTGAGGG
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
10 35 0.81
11 8 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:4195915 original size:21 final size:21
Alignment explanation
Indices: 4195874--4195915 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4195864 GATGAAAATA
* **
4195874 TAAAAAAATTTAAAATTATTT
1 TAAAAAAATATAAAAAAATTT
4195895 TAAAAAAATATAAAAAAATTT
1 TAAAAAAATATAAAAAAATTT
4195916 AAATTATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAAAAATATAAAAAAATTT
Found at i:4195920 original size:30 final size:31
Alignment explanation
Indices: 4195868--4195937 Score: 126
Period size: 30 Copynumber: 2.3 Consensus size: 31
4195858 GCCATTGATG
4195868 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
4195899 AAAATATAAAAAAATTT-AAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
4195929 AAAAT-TAAA
1 AAAATATAAA
4195938 TTGAGGGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 4 0.10
30 18 0.46
31 17 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTAAA
Found at i:4195992 original size:22 final size:21
Alignment explanation
Indices: 4195967--4196017 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
4195957 TAATATGGAT
4195967 TTGAGAGATTTTTGAAAGGAAA
1 TTGAGAGA-TTTTGAAAGGAAA
*
4195989 TTGAGAGGATTTTGGAAGGAAA
1 TTGAGA-GATTTTGAAAGGAAA
4196011 TTGAGAG
1 TTGAGAG
4196018 TTTGAGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 24 0.89
23 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.29
Consensus pattern (21 bp):
TTGAGAGATTTTGAAAGGAAA
Found at i:4196024 original size:30 final size:30
Alignment explanation
Indices: 4195989--4196046 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
4195979 TGAAAGGAAA
* *
4195989 TTGAGAGGATTTTGGAAGGAAATTGAGAGT
1 TTGAGAGAATTTTGGAAGAAAATTGAGAGT
4196019 TTGAGAGAATTTTGGAAGAAAATTGAGA
1 TTGAGAGAATTTTGGAAGAAAATTGAGA
4196047 TAGGATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.29
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGAAAATTGAGAGT
Found at i:4201363 original size:29 final size:30
Alignment explanation
Indices: 4201311--4201368 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
4201301 AACTTTTATA
*
4201311 AAAATGCTCAAATAAAGATGAAA-CTTTTC
1 AAAATGATCAAATAAAGATGAAACCTTTTC
*
4201340 AAAATGATCAAATAAGAGCT-AAACCTTTT
1 AAAATGATCAAATAA-AGATGAAACCTTTT
4201369 TTAAAGTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (30 bp):
AAAATGATCAAATAAAGATGAAACCTTTTC
Found at i:4203173 original size:30 final size:33
Alignment explanation
Indices: 4203137--4203219 Score: 109
Period size: 37 Copynumber: 2.5 Consensus size: 33
4203127 TTGATTAAAA
4203137 AAATAAATGCAACAA-GT-AAAAA-AAAGATTC
1 AAATAAATGCAACAATGTAAAAAAGAAAGATTC
4203167 AAATAAATGCAACAATTCTGTAAAAAAAGAAAGATTC
1 AAATAAATGCAACAA---TGT-AAAAAAGAAAGATTC
4203204 AAATAAATGCAACAAT
1 AAATAAATGCAACAAT
4203220 TCTGTAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
30 15 0.33
34 3 0.07
36 5 0.11
37 23 0.50
ACGTcount: A:0.60, C:0.11, G:0.10, T:0.19
Consensus pattern (33 bp):
AAATAAATGCAACAATGTAAAAAAGAAAGATTC
Found at i:4203204 original size:37 final size:37
Alignment explanation
Indices: 4203154--4203233 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
4203144 TGCAACAAGT
4203154 AAAAA-AAAGATTCAAATAAATGCAACAATTCTGTAA
1 AAAAAGAAAGATTCAAATAAATGCAACAATTCTGTAA
4203190 AAAAAGAAAGATTCAAATAAATGCAACAATTCTGTAA
1 AAAAAGAAAGATTCAAATAAATGCAACAATTCTGTAA
4203227 AAAAAGA
1 AAAAAGA
4203234 TCCGGTGTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 5 0.12
37 38 0.88
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (37 bp):
AAAAAGAAAGATTCAAATAAATGCAACAATTCTGTAA
Found at i:4209271 original size:12 final size:12
Alignment explanation
Indices: 4209254--4209279 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4209244 ATTAGTAATA
4209254 AAAAATTATGTT
1 AAAAATTATGTT
4209266 AAAAATTATGTT
1 AAAAATTATGTT
4209278 AA
1 AA
4209280 GAATAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (12 bp):
AAAAATTATGTT
Found at i:4213688 original size:14 final size:15
Alignment explanation
Indices: 4213669--4213697 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4213659 CTAACTAAGC
4213669 CTTAATCATC-TTAA
1 CTTAATCATCATTAA
4213683 CTTAATCATCATTAA
1 CTTAATCATCATTAA
4213698 GCAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (15 bp):
CTTAATCATCATTAA
Found at i:4214440 original size:21 final size:21
Alignment explanation
Indices: 4214393--4214444 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
4214383 TTGGTTAACT
* *
4214393 GGAATGGAATGTAATAGAGTT
1 GGAATGGAATGTAATACAGTG
* * *
4214414 GTAATGGAATGTTATACTGTG
1 GGAATGGAATGTAATACAGTG
4214435 GGAATGGAAT
1 GGAATGGAAT
4214445 AGAGCTGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.33, T:0.31
Consensus pattern (21 bp):
GGAATGGAATGTAATACAGTG
Found at i:4214719 original size:24 final size:25
Alignment explanation
Indices: 4214690--4214745 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
4214680 CGTGTCATGT
*
4214690 TATTATTCAAC-GATGGTGCATGAAA
1 TATTATTC-ACTGATGGTGCATCAAA
*
4214715 T-TTATGCACTGATGGTGCATCAAA
1 TATTATTCACTGATGGTGCATCAAA
4214739 TATTATT
1 TATTATT
4214746 ATTTATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 19 0.73
25 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (25 bp):
TATTATTCACTGATGGTGCATCAAA
Found at i:4214765 original size:12 final size:12
Alignment explanation
Indices: 4214737--4214790 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
4214727 TGGTGCATCA
*
4214737 AATATTATTATT
1 AATATTATTAAT
*
4214749 TATATTATTAAT
1 AATATTATTAAT
4214761 AATATT-TTAAT
1 AATATTATTAAT
*
4214772 AAAATT-TTAAAT
1 AATATTATT-AAT
4214784 AA-ATTAT
1 AATATTAT
4214791 ATTTATGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 15 0.42
12 21 0.58
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AATATTATTAAT
Found at i:4218079 original size:29 final size:28
Alignment explanation
Indices: 4218042--4218117 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
4218032 GGTTCACACA
*
4218042 TAGGCTCGCATGTAGGCT-TGCATGTACC
1 TAGGTTCGCATGTAGGCTCT-CATGTACC
* *
4218070 TATGGTTCGCATGTAGACTCTCATGTTCC
1 TA-GGTTCGCATGTAGGCTCTCATGTACC
* *
4218099 TAGGTTCACATATAGGCTC
1 TAGGTTCGCATGTAGGCTC
4218118 ACATAATTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 16 0.40
29 23 0.57
30 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (28 bp):
TAGGTTCGCATGTAGGCTCTCATGTACC
Found at i:4218785 original size:13 final size:12
Alignment explanation
Indices: 4218762--4218800 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 12
4218752 GGAAAGGAGA
4218762 TTGAAGATATTT
1 TTGAAGATATTT
4218774 TTGAAGGATATTT
1 TTGAA-GATATTT
4218787 TTGAA-A-ATTT
1 TTGAAGATATTT
4218797 TTGA
1 TTGA
4218801 CTCTTTTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.31
11 1 0.04
12 5 0.19
13 12 0.46
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (12 bp):
TTGAAGATATTT
Found at i:4227106 original size:21 final size:21
Alignment explanation
Indices: 4227061--4227107 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
4227051 TTTATTTTCG
*
4227061 ATAT-GTATATTGATTCATCT
1 ATATAGTATATTGATTCATAT
*
4227081 ATATAGTATATTGTTTACATATT
1 ATATAGTATATTGATT-CATA-T
4227104 ATAT
1 ATAT
4227108 TTATTTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 10 0.45
22 3 0.14
23 5 0.23
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (21 bp):
ATATAGTATATTGATTCATAT
Found at i:4227494 original size:62 final size:62
Alignment explanation
Indices: 4227392--4227514 Score: 237
Period size: 62 Copynumber: 2.0 Consensus size: 62
4227382 CGCTCTACTG
4227392 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACCT
1 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACCT
*
4227454 TTGATCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACC
1 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACC
4227515 CATGACTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (62 bp):
TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACCT
Found at i:4227976 original size:11 final size:10
Alignment explanation
Indices: 4227952--4227985 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
4227942 TAAACAATGA
4227952 AAATATAT-T
1 AAATATATAT
4227961 AAATATAATAT
1 AAATAT-ATAT
4227972 AAATATATAT
1 AAATATATAT
4227982 AAAT
1 AAAT
4227986 TGCATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.26
10 10 0.43
11 7 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATATAT
Found at i:4235049 original size:6 final size:6
Alignment explanation
Indices: 4235038--4235065 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
4235028 TTCAATTTGT
4235038 TGTGCC TGTGCC TGTGCC TGTGCC TGTG
1 TGTGCC TGTGCC TGTGCC TGTGCC TGTG
4235066 AGACACTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.36, T:0.36
Consensus pattern (6 bp):
TGTGCC
Found at i:4236007 original size:174 final size:174
Alignment explanation
Indices: 4235717--4236069 Score: 625
Period size: 174 Copynumber: 2.0 Consensus size: 174
4235707 TTATTTGCTT
* *
4235717 TTTCATCTTCATCTCCACCATCCACGGAATCAAGACCAGCTGTAGCCCCTTTTACTTCTGTACGC
1 TTTCATCTTCATCTCCACCATCCACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
4235782 TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
66 TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
* * *
4235847 TTTTTCCTCGTCCCTTGGAACTTCTGTTTCTCCGGTACCATTGA
131 TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
* * *
4235891 TTTCATCTTCATCTCCACCATGCACTGAATCCAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
1 TTTCATCTTCATCTCCACCATCCACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
*
4235956 TCTTGTCCCTGATCAGTATCTCCTTTTACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
66 TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
4236021 TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
131 TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
4236065 TTTCA
1 TTTCA
4236070 AGTACTTCCT
Statistics
Matches: 170, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 170 1.00
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.37
Consensus pattern (174 bp):
TTTCATCTTCATCTCCACCATCCACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
Found at i:4236364 original size:117 final size:117
Alignment explanation
Indices: 4236211--4236440 Score: 415
Period size: 117 Copynumber: 2.0 Consensus size: 117
4236201 GTTTCTATCA
* * *
4236211 GCAGAAGCAACTGTCTCTTCAACAGATTTCCTTGGCTCAAACAGCCTATCTTTCAGTTCATCAAT
1 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
4236276 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
66 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
*
4236328 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAGACAGCCCATCTTTCAGCTCATCAAT
1 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
*
4236393 CTCACTATTAAGCTTCATGTCTCTAGCATTCAATAAATCTTTTAGTTC
66 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTC
4236441 TCCATTCATG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 108 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (117 bp):
GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
Found at i:4246754 original size:27 final size:26
Alignment explanation
Indices: 4246716--4246826 Score: 114
Period size: 27 Copynumber: 3.9 Consensus size: 26
4246706 CCAATGAATA
*
4246716 GGGGAATTAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACTTAGCAACCCCT-G
4246743 GGGGAATCAGCACTTAGCAACCACCAATG
1 GGGGAATCAGCACTTAGCAACC-CC--TG
**
4246772 AATCGGGGAATCAGCACACAGCAACCCCTTG
1 ----GGGGAATCAGCACTTAGCAACCCC-TG
4246803 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
4246827 CTTCACATTT
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
27 43 0.61
28 2 0.03
29 1 0.01
30 1 0.01
31 2 0.03
32 2 0.03
33 20 0.28
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTG
Found at i:4246755 original size:102 final size:102
Alignment explanation
Indices: 4246579--4246764 Score: 300
Period size: 102 Copynumber: 1.8 Consensus size: 102
4246569 TAACCATTAT
* * * * *
4246579 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
4246644 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
* **
4246681 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
4246746 GAATCAGCACTTAGCAACC
66 GAATCAGCACTTAGCAACC
4246765 ACCAATGAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.18
Consensus pattern (102 bp):
CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
Found at i:4246780 original size:60 final size:60
Alignment explanation
Indices: 4246685--4246824 Score: 226
Period size: 60 Copynumber: 2.3 Consensus size: 60
4246675 CAGATGCGGT
* * **
4246685 GGAATCAGCACTTAACAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
* *
4246745 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
4246805 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
4246825 CCCTTCACAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
60 74 1.00
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.15
Consensus pattern (60 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
Found at i:4246857 original size:162 final size:162
Alignment explanation
Indices: 4246590--4246902 Score: 590
Period size: 162 Copynumber: 1.9 Consensus size: 162
4246580 GGTGGATTCC
4246590 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
4246655 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
66 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
**
4246720 AATTAGCACTTAGCAACCCCTCGGGGGAATCA
131 AATTAGCACACAGCAACCCCTCGGGGGAATCA
4246752 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
* *
4246817 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGG
66 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
4246882 AATTAGCACACAGCAACCCCT
131 AATTAGCACACAGCAACCCCT
4246903 TTATATGCAA
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
162 147 1.00
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (162 bp):
GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
AATTAGCACACAGCAACCCCTCGGGGGAATCA
Found at i:4247995 original size:11 final size:12
Alignment explanation
Indices: 4247967--4248000 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
4247957 GCCCAAACGT
4247967 CGAAATTTTTGAA
1 CGAAATTTTT-AA
4247980 CGAAATTTTT-A
1 CGAAATTTTTAA
4247991 CGAAATTTTT
1 CGAAATTTTT
4248001 CCGTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
13 10 0.48
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (12 bp):
CGAAATTTTTAA
Found at i:4248830 original size:137 final size:138
Alignment explanation
Indices: 4248628--4248969 Score: 398
Period size: 137 Copynumber: 2.5 Consensus size: 138
4248618 ACAACATTTA
* * *
4248628 TGTCATATTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAACTCC
* * * * * ** *
4248693 CAGCTTTTATATTAAAGCTCGCAGGATAAATATTACAGCCTCCAACACAATTAGCAAGAGCAAAA
66 CAGCTATCATACTAAAGATCGCAGGATAAAAAGCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
4248758 CTCCCAAT
131 CTCCCAAT
* * * *
4248766 TGTCATATTAAAGCTCGTAGGATAAAACCCGCA-TCTCTAACACAATTAGCGAGAGCAAAACTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAACTCC
* * * * * * *
4248830 CAGCTATCATACTAAGGATTGTAGGATAAAAAGCACAGCTTTCAACAAAATTAGCAATAGCAAAG
66 CAGCTATCATACTAAAGATCGCAGGATAAAAAGCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
*
4248895 CTCCCAGT
131 CTCCCAAT
* * * * * ** *
4248903 TGTCATACTAAGGCCCGTAAGATAAAAATCGTAGCCTCCAACACAATTAATGAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAACTCC
4248968 CA
66 CA
4248970 ATTTTCATAC
Statistics
Matches: 168, Mismatches: 35, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
137 110 0.65
138 58 0.35
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.21
Consensus pattern (138 bp):
TGTCATATTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAACTCC
CAGCTATCATACTAAAGATCGCAGGATAAAAAGCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
CTCCCAAT
Found at i:4248983 original size:69 final size:69
Alignment explanation
Indices: 4248628--4249024 Score: 339
Period size: 69 Copynumber: 5.8 Consensus size: 69
4248618 ACAACATTTA
* * *
4248628 TGTCATATTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
*
4248693 CAGCT
66 CA-AT
* * * * * *** * *
4248698 T-TTATATTAAAGCTCGCAGGATAAATATTACAGCCTCCAACACAATTAGCAAGAGCAAAACTCC
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
4248762 CAAT
66 CAAT
* * * * * *
4248766 TGTCATATTAAAGCTCGTAGGATAAAACCCGCA-TCTCTAACACAATTAGCGAGAGCAAAACTCC
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
**
4248830 CAGC
66 CAAT
* * * * * * * * * *
4248834 TATCATACTAAGGATTGTAGGATAAAAAGCACAGCTTTCAACAAAATTAGCAATAGCAAAGCTCC
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
*
4248899 CAGT
66 CAAT
* * * * **
4248903 TGTCATACTAAGGCCCGTAAGATAAAAATCGTAGCCTCCAACACAATTAATGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
4248968 CAAT
66 CAAT
* *** * * * * *
4248972 TTTCATACTAAGGCTTACAGGATAAAGACCGTAGCCTCTAACATAGTTAGCGA
1 TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGA
4249025 AAGTTGAAAA
Statistics
Matches: 255, Mismatches: 70, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
68 57 0.22
69 197 0.77
70 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (69 bp):
TGTCATACTAAGGCTCGTAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
CAAT
Found at i:4249242 original size:57 final size:57
Alignment explanation
Indices: 4249046--4249248 Score: 250
Period size: 58 Copynumber: 3.5 Consensus size: 57
4249036 TCTCAACTGT
* *
4249046 GTTATCTTTCAAAATTTTCTTAAGTATAAAACGAATCACGGATTCACATCCCTAGCTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAAC-AATCACGAATTCACATCCCTAGCTG
* * * *
4249104 GTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCAC-AGATTCACATCCCTAACTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAACA-ATCACGA-ATTCACATCCCTAGCTG
* * *
4249162 GTTATCTTTCAAAATTTTCTTAAATATGAAACAATTCGCGAATTCACAT-CCTAGTTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAACAA-TCACGAATTCACATCCCTAGCTG
*
4249219 ATTATC-TTCTAAAATTTTCTTAAATATAAA
1 GTTATCTTTC-AAAATTTTCTTAAATATAAA
4249249 GTTGCTTGTG
Statistics
Matches: 127, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
56 3 0.02
57 31 0.24
58 92 0.72
59 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (57 bp):
GTTATCTTTCAAAATTTTCTTAAATATAAAACAATCACGAATTCACATCCCTAGCTG
Found at i:4260422 original size:17 final size:18
Alignment explanation
Indices: 4260395--4260428 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4260385 CACACAATAA
4260395 ACCCAAAATAAGCCCAAC
1 ACCCAAAATAAGCCCAAC
*
4260413 ACCC-AAATAAGTCCAA
1 ACCCAAAATAAGCCCAA
4260429 GAGGAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.35, G:0.06, T:0.09
Consensus pattern (18 bp):
ACCCAAAATAAGCCCAAC
Found at i:4265827 original size:39 final size:39
Alignment explanation
Indices: 4265746--4265912 Score: 167
Period size: 39 Copynumber: 4.2 Consensus size: 39
4265736 ATTTGCCGGC
* * * *
4265746 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTTGGCACTTTGTGTGTCGAATACTGTTACTG
4265784 TTACTGATTTGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTTGGCACTTTGTGTGTCGAATACTGTTACTG
4265823 TTACTG-TTACCAACTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATT------T-GGCACTTTGTGTGTCGAATACTGTTACTG
* * * * * *
4265868 TTACCGACTCGGCGCTTTGTGTGTTGAATACTGTTACCG
1 TTACTGATTTGGCACTTTGTGTGTCGAATACTGTTACTG
4265907 TTACTG
1 TTACTG
4265913 TTACAGATTC
Statistics
Matches: 109, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
38 16 0.15
39 57 0.52
44 1 0.01
45 34 0.31
46 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATTTGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:4265843 original size:45 final size:45
Alignment explanation
Indices: 4265773--4265950 Score: 199
Period size: 45 Copynumber: 4.1 Consensus size: 45
4265763 ATGTGCCGAC
** * *
4265773 TACTGTTACTGTTACTGATTTGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCAACTCGGCACTTTGTGTGTCGAATACTGT
4265818 TACTGTTACTGTTACCAACTCGGCACTTTGTGTGTCG-A-A----
1 TACTGTTACTGTTACCAACTCGGCACTTTGTGTGTCGAATACTGT
* * *
4265857 TACTGTTACTGTTACCGACTCGGCGCTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCAACTCGGCACTTTGTGTGTCGAATACTGT
* * * *
4265902 TACCGTTACTGTTA-CAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCA-ACTCGGCACTTTGTGTGTCGAATACTGT
4265947 TACT
1 TACT
4265951 ACTACCGTTA
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
39 34 0.30
40 1 0.01
41 1 0.01
43 1 0.01
44 2 0.02
45 74 0.65
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTACCAACTCGGCACTTTGTGTGTCGAATACTGT
Done.