Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 151 of 196
Found at i:44661628 original size:9 final size:9
Alignment explanation
Indices: 44661616--44661643 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
44661606 TTTTATTACA
44661616 ACAATTAAT
1 ACAATTAAT
44661625 ACAATTAAT
1 ACAATTAAT
44661634 ACAATTAAT
1 ACAATTAAT
44661643 A
1 A
44661644 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:44661631 original size:68 final size:68
Alignment explanation
Indices: 44661557--44661727 Score: 319
Period size: 68 Copynumber: 2.5 Consensus size: 68
44661547 TTTTATTACA
44661557 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
44661622 AAT
66 AAT
44661625 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
44661690 AAT
66 AAT
*
44661693 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAA
44661728 CAATTAGTTT
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
66 27 0.26
67 1 0.01
68 74 0.73
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (68 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
AAT
Found at i:44661741 original size:22 final size:23
Alignment explanation
Indices: 44661716--44661768 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
44661706 AATAATTTGA
* * *
44661716 TAATTTTACT-AACAATTAGTTT
1 TAATTTTACTAAAAAACTAATTT
*
44661738 TAATTTTATTAAAAAACTAATTT
1 TAATTTTACTAAAAAACTAATTT
44661761 TAATTTTA
1 TAATTTTA
44661769 ATTTTAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (23 bp):
TAATTTTACTAAAAAACTAATTT
Found at i:44661757 original size:30 final size:30
Alignment explanation
Indices: 44661723--44661782 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
44661713 TGATAATTTT
*
44661723 ACTAACAATTAGTTTTAATTTT-ATTAAAAA
1 ACTAA-AATTAATTTTAATTTTAATTAAAAA
**
44661753 ACTAATTTTAATTTTAATTTTAATTAAAAA
1 ACTAAAATTAATTTTAATTTTAATTAAAAA
44661783 CGGGCCGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (30 bp):
ACTAAAATTAATTTTAATTTTAATTAAAAA
Found at i:44669824 original size:21 final size:21
Alignment explanation
Indices: 44669798--44669866 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
44669788 ATAGATTTTG
44669798 TTTTATAAATTTTAAATATTA
1 TTTTATAAATTTTAAATATTA
44669819 TTTTATAAAGTTTTAAAGTATT-
1 TTTTATAAA-TTTTAAA-TATTA
* *
44669841 TTGTA-AATATTTCTAAAAATTA
1 TTTTATAA-ATTT-TAAATATTA
44669863 TTTT
1 TTTT
44669867 TTTTAAGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
21 17 0.43
22 19 0.47
23 4 0.10
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTTATAAATTTTAAATATTA
Found at i:44669835 original size:22 final size:22
Alignment explanation
Indices: 44669798--44669840 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
44669788 ATAGATTTTG
44669798 TTTTATAAATTTTAAA-TATTA
1 TTTTATAAATTTTAAAGTATTA
44669819 TTTTATAAAGTTTTAAAGTATT
1 TTTTATAAA-TTTTAAAGTATT
44669841 TTGTAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTTATAAATTTTAAAGTATTA
Found at i:44669842 original size:20 final size:21
Alignment explanation
Indices: 44669798--44669848 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
44669788 ATAGATTTTG
*
44669798 TTTTATAAATTTTAAATATTA
1 TTTTATAAATTTTAAATAGTA
44669819 TTTTATAAAGTTTT-AA-AGTA
1 TTTTATAAA-TTTTAAATAGTA
*
44669839 TTTTGTAAAT
1 TTTTATAAAT
44669849 ATTTCTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 11 0.41
21 11 0.41
22 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (21 bp):
TTTTATAAATTTTAAATAGTA
Found at i:44673830 original size:41 final size:41
Alignment explanation
Indices: 44673773--44673923 Score: 266
Period size: 41 Copynumber: 3.7 Consensus size: 41
44673763 AGACTATACG
44673773 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
44673814 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
* *
44673855 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
*
44673896 CCTAGCAAGCTAAGTGCCGGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
44673924 TTAAATTAAG
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 101 0.95
42 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAA
Found at i:44675342 original size:45 final size:45
Alignment explanation
Indices: 44675287--44675378 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
44675277 AATAATTTAA
*
44675287 GTAAATATTTTCCATTAAAATTTGTCACTTTAGAATTTTGATTAT
1 GTAAATATTTTCCATTAAAATTTATCACTTTAGAATTTTGATTAT
* *
44675332 GTAAGTATTTTCCATTAAAATTTATCACTTTATAATTTTGATTAT
1 GTAAATATTTTCCATTAAAATTTATCACTTTAGAATTTTGATTAT
44675377 GT
1 GT
44675379 TGTTCCCATA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.50
Consensus pattern (45 bp):
GTAAATATTTTCCATTAAAATTTATCACTTTAGAATTTTGATTAT
Found at i:44675994 original size:59 final size:62
Alignment explanation
Indices: 44675892--44676037 Score: 135
Period size: 59 Copynumber: 2.4 Consensus size: 62
44675882 TTAAAAAAAA
* *
44675892 TTAAGGACTAACTT-GAACAAAAAAAAGGTTCTAAGTCCCAATGT-AGGAACAAATGCCAAGT
1 TTAATGACTAACTTGGAACAAAAAAAAGGTTCTAAGTCCCAATGTGA-GAACAAATGCAAAGT
* * * *
44675953 TTAATGACTAACTTGGAA-AAAACAAA-GTTC-ATA-TCCTAATGTGAGAACAATTTCAAAGT
1 TTAATGACTAACTTGGAACAAAAAAAAGGTTCTA-AGTCCCAATGTGAGAACAAATGCAAAGT
* **
44676012 TTAGAT-ACTAACATGGATGAAAAAAA
1 TTA-ATGACTAACTTGGAACAAAAAAA
44676038 CATTTAGACC
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
59 34 0.48
60 14 0.20
61 20 0.28
62 3 0.04
ACGTcount: A:0.46, C:0.14, G:0.16, T:0.25
Consensus pattern (62 bp):
TTAATGACTAACTTGGAACAAAAAAAAGGTTCTAAGTCCCAATGTGAGAACAAATGCAAAGT
Found at i:44679427 original size:26 final size:26
Alignment explanation
Indices: 44679356--44679428 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
44679346 TATTTTCTTG
44679356 AAATTTTACTAGAGGTAAAATCGTCA
1 AAATTTTACTAGAGGTAAAATCGTCA
* * * *
44679382 AAATTTTACCATAGGCAAAATCTTCA
1 AAATTTTACTAGAGGTAAAATCGTCA
*
44679408 AAATTTTACTAGGGGTAAAAT
1 AAATTTTACTAGAGGTAAAAT
44679429 AGGGATGAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (26 bp):
AAATTTTACTAGAGGTAAAATCGTCA
Found at i:44689171 original size:16 final size:14
Alignment explanation
Indices: 44689150--44689187 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
44689140 AAAAGAAAAT
44689150 AAAGTAAAGAAATGAA
1 AAAGTAAA-AAAT-AA
44689166 AAAGTAAAAAATAA
1 AAAGTAAAAAATAA
44689180 AAA-TAAAA
1 AAAGTAAAA
44689188 CACAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 5 0.23
15 4 0.18
16 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (14 bp):
AAAGTAAAAAATAA
Found at i:44689182 original size:15 final size:16
Alignment explanation
Indices: 44689150--44689182 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
44689140 AAAAGAAAAT
*
44689150 AAAGTAAAGAAATGAA
1 AAAGTAAAGAAATAAA
44689166 AAAGTAAA-AAATAAA
1 AAAGTAAAGAAATAAA
44689181 AA
1 AA
44689183 TAAAACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAGTAAAGAAATAAA
Found at i:44707141 original size:41 final size:41
Alignment explanation
Indices: 44707096--44707173 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
44707086 AATCCAAATA
** *
44707096 TGATACACTGGCACGAAGCCTGCTAGGCATAAAGCCTGATC
1 TGATACACCAGCACAAAGCCTGCTAGGCATAAAGCCTGATC
*
44707137 TGATACACCAGCATAAAGCCTGCTAGGCATAAAGCCT
1 TGATACACCAGCACAAAGCCTGCTAGGCATAAAGCCT
44707174 ACTAGGCACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (41 bp):
TGATACACCAGCACAAAGCCTGCTAGGCATAAAGCCTGATC
Found at i:44707168 original size:16 final size:16
Alignment explanation
Indices: 44707147--44707190 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
44707137 TGATACACCA
44707147 GCATAAAGCCTGCTAG
1 GCATAAAGCCTGCTAG
*
44707163 GCATAAAGCCTACTAG
1 GCATAAAGCCTGCTAG
*
44707179 GCACAAAGCCTG
1 GCATAAAGCCTG
44707191 AATATAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.34, C:0.27, G:0.23, T:0.16
Consensus pattern (16 bp):
GCATAAAGCCTGCTAG
Found at i:44708571 original size:20 final size:18
Alignment explanation
Indices: 44708524--44708572 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
44708514 TAAGATAAAC
44708524 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
44708541 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
44708561 ATTAAATTAATA
1 ATTAAATTAATA
44708573 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:44718206 original size:50 final size:50
Alignment explanation
Indices: 44718082--44718330 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
44718072 GATAATAACA
* * ** * *
44718082 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
44718133 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
44718183 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
44718233 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
44718288 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
44718331 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:44718260 original size:100 final size:104
Alignment explanation
Indices: 44718081--44718330 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
44718071 TGATAATAAC
**
44718081 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
44718146 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
44718183 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
44718246 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
44718288 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
44718331 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:44718446 original size:13 final size:13
Alignment explanation
Indices: 44718425--44718456 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
44718415 GCTTGGATCA
*
44718425 TCATCAAATAAAT
1 TCATAAAATAAAT
44718438 TCATAAAATAAAT
1 TCATAAAATAAAT
44718451 TCATAA
1 TCATAA
44718457 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:44718703 original size:30 final size:30
Alignment explanation
Indices: 44718668--44718725 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
44718658 CCTCGACTCT
*
44718668 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
44718698 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
44718726 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:44723370 original size:3 final size:3
Alignment explanation
Indices: 44723362--44723444 Score: 139
Period size: 3 Copynumber: 27.7 Consensus size: 3
44723352 TTATCTACAA
* * *
44723362 TAC TAC TAC TAC TAC TAC CAC TAC TAT TAC TAC TAG TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
44723410 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
44723445 TGGAGCACTC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.34, C:0.31, G:0.01, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:44724719 original size:16 final size:16
Alignment explanation
Indices: 44724698--44724730 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
44724688 TGAAGGTGCG
44724698 TCAACACTCATGCTGT
1 TCAACACTCATGCTGT
*
44724714 TCAACATTCATGCTGT
1 TCAACACTCATGCTGT
44724730 T
1 T
44724731 TTGTTGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (16 bp):
TCAACACTCATGCTGT
Found at i:44724765 original size:1 final size:1
Alignment explanation
Indices: 44724759--44724785 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
44724749 CCGCCTCCCT
44724759 CCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCC
44724786 AAAATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:44726241 original size:119 final size:120
Alignment explanation
Indices: 44726087--44726325 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 120
44726077 GGAGTCATGA
* * *
44726087 ATTCCGAACATAAACCATACAACGGACATGAAGAATG-CAAAAAAAAAAACCCTTTAACTTCGTT
1 ATTCCGAACATAAACCATACAACGAACATGAAGAATGAAAAAAAAAAAAAACCTTTAACTTCGTT
44726151 ATTTCAATCAAAATTTCATTTTAATTTTATAGACTTTTAATAAATATATGAGTTG
66 ATTTCAATCAAAATTTCATTTTAATTTTATAGACTTTTAATAAATATATGAGTTG
44726206 ATTCCGAACATAAACCATACAACGAACATGAAGAATGTAAAAAAAAAAAAAACCTTTAACTTCGT
1 ATTCCGAACATAAACCATACAACGAACATGAAGAATG-AAAAAAAAAAAAAACCTTTAACTTCGT
*
44726271 TATTTCAATCAAAATTTCATTTTAATTTTATAGACTTTTAATAAATATATTAGTT
65 TATTTCAATCAAAATTTCATTTTAATTTTATAGACTTTTAATAAATATATGAGTT
44726326 ACCTCTTTCA
Statistics
Matches: 114, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
119 36 0.32
121 78 0.68
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.33
Consensus pattern (120 bp):
ATTCCGAACATAAACCATACAACGAACATGAAGAATGAAAAAAAAAAAAAACCTTTAACTTCGTT
ATTTCAATCAAAATTTCATTTTAATTTTATAGACTTTTAATAAATATATGAGTTG
Found at i:44726408 original size:29 final size:29
Alignment explanation
Indices: 44726376--44726470 Score: 82
Period size: 29 Copynumber: 3.6 Consensus size: 29
44726366 ATTAGGATAA
44726376 ATAT-ATTAGTTGATTGTTGAATATCTGTG
1 ATATGATT-GTTGATTGTTGAATATCTGTG
* **
44726405 ATATGATTGTTGATAG--G-ATA--AAT-
1 ATATGATTGTTGATTGTTGAATATCTGTG
*
44726428 ATAT--TAGTTGATTGTTGAATATCTGTG
1 ATATGATTGTTGATTGTTGAATATCTGTG
44726455 ATATGATTGTTGATTG
1 ATATGATTGTTGATTG
44726471 GTGGATGTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 18
0.65 0.11 0.24
Matches are distributed among these distances:
21 8 0.16
23 5 0.10
24 4 0.08
26 4 0.08
27 5 0.10
29 20 0.41
30 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.46
Consensus pattern (29 bp):
ATATGATTGTTGATTGTTGAATATCTGTG
Found at i:44726412 original size:22 final size:22
Alignment explanation
Indices: 44726386--44726467 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 22
44726376 ATATATTAGT
44726386 TGATTGTTGAATATCTGTGATA
1 TGATTGTTGAATATCTGTGATA
** *
44726408 TGATTGTTGATAGGATAAATAT-ATTA
1 TGATTGTTG--A--ATATCTGTGA-TA
44726434 GTTGATTGTTGAATATCTGTGATA
1 --TGATTGTTGAATATCTGTGATA
44726458 TGATTGTTGA
1 TGATTGTTGA
44726468 TTGGTGGATG
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
22 19 0.41
24 8 0.17
25 2 0.04
26 8 0.17
28 9 0.20
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.45
Consensus pattern (22 bp):
TGATTGTTGAATATCTGTGATA
Found at i:44726443 original size:50 final size:50
Alignment explanation
Indices: 44726368--44726468 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
44726358 GTCAAGATAT
44726368 TAGGATAAATATATTAGTTGATTGTTGAATATCTGTGATATGATTGTTGA
1 TAGGATAAATATATTAGTTGATTGTTGAATATCTGTGATATGATTGTTGA
44726418 TAGGATAAATATATTAGTTGATTGTTGAATATCTGTGATATGATTGTTGA
1 TAGGATAAATATATTAGTTGATTGTTGAATATCTGTGATATGATTGTTGA
44726468 T
1 T
44726469 TGGTGGATGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.45
Consensus pattern (50 bp):
TAGGATAAATATATTAGTTGATTGTTGAATATCTGTGATATGATTGTTGA
Found at i:44730288 original size:44 final size:44
Alignment explanation
Indices: 44730183--44730307 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 44
44730173 TAATCTATAG
* *
44730183 CTTCAATCTGTTCCACTGCAACTTCAGGAAAATAAGATCCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATCCGCTAT
* * **
44730228 CTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTG-TAT
1 CTTCAATCTGCTCCACTGCAACTTCAG-GAGATAAGATCCGCTAT
* * *
44730272 CTTCAATCTGCCCCACTGCAACCTCAGGGGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGA
44730308 CTTGTGGCTC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 7 0.10
44 27 0.40
45 33 0.49
46 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGATCCGCTAT
Found at i:44731135 original size:24 final size:24
Alignment explanation
Indices: 44731083--44731135 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
44731073 TGCCCCTACT
**
44731083 GTAATCTTCAAAGTTCAATCTGCC
1 GTAATCTTCAAAGTTCAATCCACC
* * *
44731107 ATAATCTTCAAGGTTCAGTCCACC
1 GTAATCTTCAAAGTTCAATCCACC
44731131 GTAAT
1 GTAAT
44731136 TTTGGGACAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (24 bp):
GTAATCTTCAAAGTTCAATCCACC
Found at i:44731797 original size:108 final size:108
Alignment explanation
Indices: 44731605--44731801 Score: 295
Period size: 108 Copynumber: 1.8 Consensus size: 108
44731595 GAAAAATGCT
* *
44731605 TGAAAAAGATTATCATAATGGACAAGATCAAATTTTATTGAGAGCAAAGCTCTAAACAAATAAAT
1 TGAAAAAGATTATCACAATGGACAAGATCAAATTTTATTGAGAGCAAAGCTCGAAACAAATAAAT
* *
44731670 TAATCAGGATAGCAAATTTTGCTAAAATTCAAAGTGAATAAGA
66 TAATCAAGATAACAAATTTTGCTAAAATTCAAAGTGAATAAGA
** * * * *
44731713 TGAAAAAGATTATCACAATGGACAAGATGGAATTTTGTTGAGAGCAAAGCTCGAGACGAATAGAT
1 TGAAAAAGATTATCACAATGGACAAGATCAAATTTTATTGAGAGCAAAGCTCGAAACAAATAAAT
*
44731778 TAATCAAGATAACATATTTTGCTA
66 TAATCAAGATAACAAATTTTGCTA
44731802 GAATAAAAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 78 1.00
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (108 bp):
TGAAAAAGATTATCACAATGGACAAGATCAAATTTTATTGAGAGCAAAGCTCGAAACAAATAAAT
TAATCAAGATAACAAATTTTGCTAAAATTCAAAGTGAATAAGA
Found at i:44743534 original size:19 final size:19
Alignment explanation
Indices: 44743510--44743546 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
44743500 TAAATGAACA
*
44743510 AATAATAGCAATAATAATT
1 AATAATAACAATAATAATT
*
44743529 AATAATAACAGTAATAAT
1 AATAATAACAATAATAAT
44743547 ATCAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (19 bp):
AATAATAACAATAATAATT
Found at i:44745252 original size:23 final size:23
Alignment explanation
Indices: 44745221--44745265 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
44745211 TACAATCAAT
44745221 ATTACACATATC-AACAAGCCATA
1 ATTACACAT-TCAAACAAGCCATA
*
44745244 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
44745266 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCATA
Found at i:44751595 original size:19 final size:21
Alignment explanation
Indices: 44751570--44751614 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
44751560 ACATCATTTT
*
44751570 CAGAAGC-C-TGAAGGCTAAA
1 CAGAAGCGCATGAAAGCTAAA
*
44751589 TAGAAGCGCATGAAAGCTAAA
1 CAGAAGCGCATGAAAGCTAAA
44751610 CAGAA
1 CAGAA
44751615 AGTAAACACG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.29
20 1 0.05
21 14 0.67
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.11
Consensus pattern (21 bp):
CAGAAGCGCATGAAAGCTAAA
Found at i:44751894 original size:101 final size:101
Alignment explanation
Indices: 44751709--44751948 Score: 390
Period size: 101 Copynumber: 2.4 Consensus size: 101
44751699 AATTCATCCT
* * *
44751709 TTACATTCATAGTGCCATAACCCAATTATGGTCTTGTCATTAGAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
44751774 CTTACATATAAACAATGCCATGGTCCAACCATGGTC
66 CTTACATATAAACAATGCCATGGTCCAACCATGGTC
* * * * *
44751810 TTACGTTCATAGTGCAATAACCCAGTTATGGTCTTATCATCATAATGCCATAGCCTATCTATGGT
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
*
44751875 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACAATGCCATGGTCCAACCATGGTC
*
44751911 TTACATTCATTGTGCCATAACCCAGTTATGGTCTTATC
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATC
44751949 CGGCAATTCA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 127 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (101 bp):
TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
CTTACATATAAACAATGCCATGGTCCAACCATGGTC
Found at i:44754996 original size:45 final size:44
Alignment explanation
Indices: 44754925--44755023 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 44
44754915 CAATGGCAAA
* * *
44754925 ATTTATCTACGATATTTTGCTATGTATTCATTGCCCAGTGACAG
1 ATTTATCTACGATATTTTGCTATGTATCCATAGCCCAATGACAG
* * *
44754969 ATTTCATCTACGA-ATTTTTGTTTTGTATCCATAGCCCAATGATAG
1 ATTT-ATCTACGATA-TTTTGCTATGTATCCATAGCCCAATGACAG
44755014 ATTTTATCTA
1 A-TTTATCTA
44755024 TGAAACCAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
44 5 0.11
45 38 0.83
46 3 0.07
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (44 bp):
ATTTATCTACGATATTTTGCTATGTATCCATAGCCCAATGACAG
Found at i:44761828 original size:27 final size:29
Alignment explanation
Indices: 44761798--44761851 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
44761788 TTAATATCCA
*
44761798 AATAAGTAAAAT-AAAAT-AAAATAAAGT
1 AATAAATAAAATAAAAATAAAAATAAAGT
*
44761825 AATAAATAAAGTAAAAATAAAAATAAA
1 AATAAATAAAATAAAAATAAAAATAAA
44761852 AATTGGGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 5 0.22
29 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (29 bp):
AATAAATAAAATAAAAATAAAAATAAAGT
Found at i:44761833 original size:12 final size:11
Alignment explanation
Indices: 44761797--44761845 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 11
44761787 ATTAATATCC
44761797 AAAT-AAGT-A
1 AAATAAAGTAA
*
44761806 AAATAAAAT-A
1 AAATAAAGTAA
44761816 AAATAAAGTAA
1 AAATAAAGTAA
44761827 TAAATAAAGTAA
1 -AAATAAAGTAA
44761839 AAATAAA
1 AAATAAA
44761846 AATAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 4 0.11
10 12 0.34
11 8 0.23
12 11 0.31
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.20
Consensus pattern (11 bp):
AAATAAAGTAA
Found at i:44761833 original size:17 final size:17
Alignment explanation
Indices: 44761805--44761852 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
44761795 CCAAATAAGT
44761805 AAAAT-AAAATAAAAT-
1 AAAATAAAAATAAAATA
* *
44761820 AAAGTAATAAATAAAGTA
1 AAAATAA-AAATAAAATA
44761838 AAAATAAAAATAAAA
1 AAAATAAAAATAAAA
44761853 ATTGGGTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.15
16 1 0.04
17 15 0.58
18 6 0.23
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:44761851 original size:12 final size:11
Alignment explanation
Indices: 44761805--44761854 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 11
44761795 CCAAATAAGT
44761805 AAAATAAAAT-
1 AAAATAAAATA
*
44761815 AAAATAAAGTA
1 AAAATAAAATA
*
44761826 ATAAATAAAGTA
1 A-AAATAAAATA
44761838 AAAATAAAAATA
1 AAAAT-AAAATA
44761850 AAAAT
1 AAAAT
44761855 TGGGTTGCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 9 0.26
11 5 0.14
12 21 0.60
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:44765898 original size:24 final size:24
Alignment explanation
Indices: 44765866--44765915 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
44765856 TTTTGCATTT
44765866 CAACCCTTGTGTCCTCCATGCTTG
1 CAACCCTTGTGTCCTCCATGCTTG
*
44765890 CAACCCTTGTGTTCTCCATGCTTG
1 CAACCCTTGTGTCCTCCATGCTTG
44765914 CA
1 CA
44765916 CTTTTGGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.14, C:0.36, G:0.16, T:0.34
Consensus pattern (24 bp):
CAACCCTTGTGTCCTCCATGCTTG
Found at i:44767380 original size:61 final size:61
Alignment explanation
Indices: 44767285--44767401 Score: 198
Period size: 61 Copynumber: 1.9 Consensus size: 61
44767275 AAATTAACCC
* ** *
44767285 TGTAAGACCCCTTACCCGAGACCGTCGTCGGAATCGAGTACGAGATGTTATCCAATATAAA
1 TGTAACACCCCTTACCCGAGACCGTCACCGGAATCGAGTACAAGATGTTATCCAATATAAA
44767346 TGTAACACCCCTTACCCGAGACCGTCACCGGAATCGAGTACAAGATGTTATCCAAT
1 TGTAACACCCCTTACCCGAGACCGTCACCGGAATCGAGTACAAGATGTTATCCAAT
44767402 TTAACTTACC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (61 bp):
TGTAACACCCCTTACCCGAGACCGTCACCGGAATCGAGTACAAGATGTTATCCAATATAAA
Found at i:44768591 original size:23 final size:23
Alignment explanation
Indices: 44768565--44768686 Score: 190
Period size: 23 Copynumber: 5.3 Consensus size: 23
44768555 ATAAGTGCAG
44768565 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
44768588 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
44768611 CACTAAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
44768634 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
44768657 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
44768680 CACTGAT
1 CACTGAT
44768687 CAATAACACT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 88 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:44774840 original size:61 final size:61
Alignment explanation
Indices: 44774760--44774880 Score: 197
Period size: 61 Copynumber: 2.0 Consensus size: 61
44774750 CTGATACCAC
* * *
44774760 TAAATGTAACACCCCTTACCCGAGACTATCGCCGGAATCGAGTACGAGATGTTATCCAATA
1 TAAATGTAACACCACTTACCCGAGACCATCACCGGAATCGAGTACGAGATGTTATCCAATA
* *
44774821 TAAATGTAACACCATTTACCCGAGACCGTCACCGGAATCGAGTACGAGATGTTATCCAAT
1 TAAATGTAACACCACTTACCCGAGACCATCACCGGAATCGAGTACGAGATGTTATCCAAT
44774881 TTAACTTACC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (61 bp):
TAAATGTAACACCACTTACCCGAGACCATCACCGGAATCGAGTACGAGATGTTATCCAATA
Found at i:44776070 original size:23 final size:23
Alignment explanation
Indices: 44776044--44776117 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
44776034 ATAAGTGCAA
44776044 CACTGTTATGTAGCCGAAGCTAC
1 CACTGTTATGTAGCCGAAGCTAC
44776067 CACTGTTATGTAGCCGAAGCTAC
1 CACTGTTATGTAGCCGAAGCTAC
** *
44776090 CACTGAAACGTAGCCGAAGCTAC
1 CACTGTTATGTAGCCGAAGCTAC
44776113 CACTG
1 CACTG
44776118 ATCAATAACA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (23 bp):
CACTGTTATGTAGCCGAAGCTAC
Found at i:44779148 original size:6 final size:6
Alignment explanation
Indices: 44779137--44779170 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
44779127 AAATATGTTC
* *
44779137 AATTCT AATTCT AATTCT AATTCC AATTCC AATT
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATT
44779171 TGGGTTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (6 bp):
AATTCT
Found at i:44785541 original size:6 final size:6
Alignment explanation
Indices: 44785530--44785564 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
44785520 AAATATGTTC
44785530 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
44785565 CAGTTCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44785575 original size:18 final size:18
Alignment explanation
Indices: 44785529--44785575 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
44785519 CAAATATGTT
*
44785529 CAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
* *
44785547 TAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
*
44785565 CAGTTCCAATT
1 CAATTCCAATT
44785576 TGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (18 bp):
CAATTCCAATTCTAATTC
Found at i:44790303 original size:6 final size:6
Alignment explanation
Indices: 44790292--44790332 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
44790282 AAATATGTTC
44790292 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
44790333 CAGTTCCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44790343 original size:18 final size:18
Alignment explanation
Indices: 44790292--44790343 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
44790282 AAATATGTTC
* *
44790292 AATTCTAATTCTAATTCT
1 AATTCCAATTCCAATTCT
* *
44790310 AATTCTAATTCTAATTCT
1 AATTCCAATTCCAATTCT
*
44790328 AATTCCAGTTCCAATT
1 AATTCCAATTCCAATT
44790344 TGAGTTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (18 bp):
AATTCCAATTCCAATTCT
Found at i:44795066 original size:6 final size:6
Alignment explanation
Indices: 44795055--44795095 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
44795045 AAATATGTTC
44795055 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
44795096 CAGTTCCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44795106 original size:18 final size:18
Alignment explanation
Indices: 44795055--44795106 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
44795045 AAATATGTTC
* *
44795055 AATTCTAATTCTAATTCT
1 AATTCCAATTCCAATTCT
* *
44795073 AATTCTAATTCTAATTCT
1 AATTCCAATTCCAATTCT
*
44795091 AATTCCAGTTCCAATT
1 AATTCCAATTCCAATT
44795107 TGAGTTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (18 bp):
AATTCCAATTCCAATTCT
Found at i:44799831 original size:6 final size:6
Alignment explanation
Indices: 44799820--44799854 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
44799810 AAATATGTTC
44799820 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
44799855 CAGTTCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44799865 original size:18 final size:18
Alignment explanation
Indices: 44799819--44799865 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
44799809 CAAATATGTT
*
44799819 CAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
* *
44799837 TAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
*
44799855 CAGTTCCAATT
1 CAATTCCAATT
44799866 TGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (18 bp):
CAATTCCAATTCTAATTC
Found at i:44804626 original size:6 final size:6
Alignment explanation
Indices: 44804615--44804649 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
44804605 AAATATGTTC
44804615 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTC
44804650 CAGTTCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44804660 original size:18 final size:18
Alignment explanation
Indices: 44804614--44804660 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
44804604 CAAATATGTT
*
44804614 CAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
* *
44804632 TAATTCTAATTCTAATTC
1 CAATTCCAATTCTAATTC
*
44804650 CAGTTCCAATT
1 CAATTCCAATT
44804661 TGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (18 bp):
CAATTCCAATTCTAATTC
Found at i:44806094 original size:15 final size:15
Alignment explanation
Indices: 44806074--44806103 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
44806064 CTCATAAGCT
*
44806074 TCTATATGGCTTCAA
1 TCTATAGGGCTTCAA
44806089 TCTATAGGGCTTCAA
1 TCTATAGGGCTTCAA
44806104 CAATGATAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (15 bp):
TCTATAGGGCTTCAA
Found at i:44809461 original size:6 final size:6
Alignment explanation
Indices: 44809450--44809474 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
44809440 AAATATGTTC
44809450 AATTCT AATTCT AATTCT AATTCT A
1 AATTCT AATTCT AATTCT AATTCT A
44809475 GTTCCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTCT
Found at i:44814269 original size:6 final size:6
Alignment explanation
Indices: 44814258--44814310 Score: 106
Period size: 6 Copynumber: 8.8 Consensus size: 6
44814248 AAATATGTTC
44814258 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT
1 AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT AATTCT
44814306 AATTC
1 AATTC
44814311 CAGTTCCAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTCT
Found at i:44820732 original size:51 final size:51
Alignment explanation
Indices: 44820660--44820763 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
44820650 AATTAAATTG
44820660 ATGAACAAGAACTTGATATGATATATACGTGAATACAATAACAATACATTA
1 ATGAACAAGAACTTGATATGATATATACGTGAATACAATAACAATACATTA
44820711 ATGAACAAGAACTTGATATGATATATACGTGAATACAATAACAATACATTA
1 ATGAACAAGAACTTGATATGATATATACGTGAATACAATAACAATACATTA
44820762 AT
1 AT
44820764 TGCGCTACAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.28
Consensus pattern (51 bp):
ATGAACAAGAACTTGATATGATATATACGTGAATACAATAACAATACATTA
Found at i:44820868 original size:6 final size:6
Alignment explanation
Indices: 44820853--44820890 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
44820843 CATCAAATAT
* *
44820853 ATTC-A ATTCTA ATTCTA ATTCTA ATTCCA ATTCCA ATT
1 ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATTCTA ATT
44820891 TGAGTTTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (6 bp):
ATTCTA
Found at i:44825354 original size:13 final size:14
Alignment explanation
Indices: 44825336--44825364 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
44825326 AAGAAAAATT
44825336 AGAGAGGAAG-AGA
1 AGAGAGGAAGAAGA
44825349 AGAGAGGAAGAAGA
1 AGAGAGGAAGAAGA
44825363 AG
1 AG
44825365 GGGCAGCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (14 bp):
AGAGAGGAAGAAGA
Found at i:44827256 original size:23 final size:22
Alignment explanation
Indices: 44827223--44827290 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 22
44827213 TAAGCTCTTC
*
44827223 TTGTTTTATTGGATTATTTTTTA
1 TTGTTTAATTGGATTA-TTTTTA
44827246 TTGTTTAATTGG-TTGATTTTTA
1 TTGTTTAATTGGATT-ATTTTTA
* *
44827268 --GTTTAATTAGATTAATTTATA
1 TTGTTTAATTGGATT-ATTTTTA
44827289 TT
1 TT
44827291 AATTTGATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 9 0.24
21 8 0.22
22 8 0.22
23 12 0.32
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (22 bp):
TTGTTTAATTGGATTATTTTTA
Found at i:44842316 original size:28 final size:30
Alignment explanation
Indices: 44842271--44842328 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
44842261 TTTTTTTTCC
44842271 TTCCTTTCCTTTTAATTTTT-CTT-ATTCT
1 TTCCTTTCCTTTTAATTTTTCCTTCATTCT
*
44842299 TTCCTTT-CTTTATCATTTTTCCTTCATTCT
1 TTCCTTTCCTTT-TAATTTTTCCTTCATTCT
44842329 CTTCTCTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 4 0.15
28 14 0.54
29 3 0.12
30 5 0.19
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.66
Consensus pattern (30 bp):
TTCCTTTCCTTTTAATTTTTCCTTCATTCT
Found at i:44846962 original size:71 final size:71
Alignment explanation
Indices: 44846881--44847078 Score: 236
Period size: 71 Copynumber: 2.8 Consensus size: 71
44846871 GAATTAATTT
* * * *
44846881 GATGGCTGAGATCTAACATGTGTTGCGGATTCTCAACAGCTTGAGTGAGTATCATCAAATCATTT
1 GATGGTTGAGATCTAACATGTGTTGCGGATTCTCAACAGCTTGAGTGAGCAGCATCAAATCATTC
44846946 TTTATC
66 TTTATC
* * ** * * * *
44846952 GATGGTTGAGATTTAGCACATGTTGCGAATTCTCGATAGCTTGAGTGAGCAGCATCGAATCATTC
1 GATGGTTGAGATCTAACATGTGTTGCGGATTCTCAACAGCTTGAGTGAGCAGCATCAAATCATTC
44847017 TTTATC
66 TTTATC
* * * *
44847023 AATGGTTGAGATCCAACATAG-GTTGCAGATCCTCAACAGCTTGAGTGAGCAGCATC
1 GATGGTTGAGATCTAACAT-GTGTTGCGGATTCTCAACAGCTTGAGTGAGCAGCATC
44847079 GAATAAAACT
Statistics
Matches: 103, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
71 103 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (71 bp):
GATGGTTGAGATCTAACATGTGTTGCGGATTCTCAACAGCTTGAGTGAGCAGCATCAAATCATTC
TTTATC
Found at i:44849652 original size:23 final size:23
Alignment explanation
Indices: 44849633--44849677 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
44849623 CCACACTAAT
* *
44849633 ATGTAGCTGAAGCTACCACTGAA
1 ATGTAGCCGAAACTACCACTGAA
44849656 ATGTAGCCGAAACTACCACTGA
1 ATGTAGCCGAAACTACCACTGA
44849678 TCAATAACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (23 bp):
ATGTAGCCGAAACTACCACTGAA
Found at i:44850868 original size:11 final size:11
Alignment explanation
Indices: 44850852--44850877 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44850842 TCGGCCAAGT
44850852 TTTGTGCTTTA
1 TTTGTGCTTTA
44850863 TTTGTGCTTTA
1 TTTGTGCTTTA
44850874 TTTG
1 TTTG
44850878 GTGAGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.19, T:0.65
Consensus pattern (11 bp):
TTTGTGCTTTA
Found at i:44851655 original size:42 final size:42
Alignment explanation
Indices: 44851591--44851761 Score: 206
Period size: 42 Copynumber: 4.1 Consensus size: 42
44851581 TTAGGATACT
* *
44851591 GATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCTTC
1 GATATGAGATT-CGTGTAAGACCATGTCTAGGACATTGGCATC
* * * * *
44851634 -ATTATGTGATTCATGTAAGACCATATCTGGGACATTGGCACC
1 GA-TATGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATC
44851676 GATATGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATC
1 GATATGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATC
*
44851718 GATATGAGAATCGTGTAAGACCATAG-CTA-G-CTATTGGCATC
1 GATATGAGATTCGTGTAAGACCAT-GTCTAGGAC-ATTGGCATC
44851759 GAT
1 GAT
44851762 TTATGATAGC
Statistics
Matches: 113, Mismatches: 11, Indels: 10
0.84 0.08 0.07
Matches are distributed among these distances:
40 1 0.01
41 13 0.12
42 88 0.78
43 11 0.10
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GATATGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATC
Found at i:44851777 original size:84 final size:84
Alignment explanation
Indices: 44851605--44851783 Score: 204
Period size: 84 Copynumber: 2.1 Consensus size: 84
44851595 TGTGATTACG
* * * * *
44851605 TGTAAGACCATGTCTAGGACATTGGCTTCATTATGTGATTCATGTAAGACCATATCTGGGACATT
1 TGTAAGACCATGTCTAGGACATTGGCATCATTATGAGAATCATGTAAGACCATAGCTGAGACATT
* *
44851670 GGCACCGATATGAGATTCG
66 GGCACCGATATGAGATGCA
*
44851689 TGTAAGACCATGTCTAGGACATTGGCATCGA-TATGAGAATCGTGTAAGACCATAGCT-AG-CTA
1 TGTAAGACCATGTCTAGGACATTGGCATC-ATTATGAGAATCATGTAAGACCATAGCTGAGAC-A
* *
44851751 TTGGCATCGAT-TTATGATAGCA
64 TTGGCACCGATATGA-GAT-GCA
44851773 TGTAAGACCAT
1 TGTAAGACCAT
44851784 ATCTGGGATA
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
82 3 0.04
83 15 0.19
84 62 0.77
85 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATGTCTAGGACATTGGCATCATTATGAGAATCATGTAAGACCATAGCTGAGACATT
GGCACCGATATGAGATGCA
Found at i:44851798 original size:42 final size:41
Alignment explanation
Indices: 44851605--44851799 Score: 155
Period size: 42 Copynumber: 4.7 Consensus size: 41
44851595 TGTGATTACG
* * * * *
44851605 TGTAAGACCATGTCTAGGACATTGGCTTC-ATTATGTGATTCA
1 TGTAAGACCATATCTGGGACATTGGCATCGA-TATG-AAATCA
* * *
44851647 TGTAAGACCATATCTGGGACATTGGCACCGATATGAGATTCG
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGA-AATCA
* * *
44851689 TGTAAGACCATGTCTAGGACATTGGCATCGATATGAGAATCG
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGA-AATCA
* * * *
44851731 TGTAAGACCATAGCT-AG-CTATTGGCATCGATTTATGATAGCA
1 TGTAAGACCATATCTGGGAC-ATTGGCATCGA--TATGAAATCA
*
44851773 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATATCTGGGACATTGGCAT
44851800 TGTGCGAGTT
Statistics
Matches: 127, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
40 1 0.01
41 12 0.09
42 106 0.83
43 8 0.06
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGACATTGGCATCGATATGAAATCA
Found at i:44852882 original size:17 final size:17
Alignment explanation
Indices: 44852860--44852910 Score: 93
Period size: 17 Copynumber: 3.0 Consensus size: 17
44852850 GACTAATCCC
*
44852860 TATACATCACTTAGGTA
1 TATACATTACTTAGGTA
44852877 TATACATTACTTAGGTA
1 TATACATTACTTAGGTA
44852894 TATACATTACTTAGGTA
1 TATACATTACTTAGGTA
44852911 CATGCCACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (17 bp):
TATACATTACTTAGGTA
Found at i:44853682 original size:23 final size:23
Alignment explanation
Indices: 44853612--44853696 Score: 108
Period size: 21 Copynumber: 3.9 Consensus size: 23
44853602 CCTGATCAGT
44853612 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
44853633 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
44853653 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
44853676 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
44853697 GTCGGCAAAG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
20 9 0.17
21 23 0.43
23 22 0.41
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:44853694 original size:44 final size:41
Alignment explanation
Indices: 44853612--44853696 Score: 116
Period size: 44 Copynumber: 2.0 Consensus size: 41
44853602 CCTGATCAGT
* *
44853612 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACATAAGTGCCTGAAACGACACACAAAGTGCCTG
*
44853653 ATACGACACATAAAGTGCCTGAGATACGACACATAAAGTGCCTG
1 ATACGACACAT-AAGTGCCTGA-A-ACGACACACAAAGTGCCTG
44853697 GTCGGCAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 11 0.29
42 10 0.26
43 1 0.03
44 16 0.42
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTGAAACGACACACAAAGTGCCTG
Found at i:44854784 original size:2 final size:2
Alignment explanation
Indices: 44854777--44854860 Score: 50
Period size: 2 Copynumber: 47.5 Consensus size: 2
44854767 TTTCTTTTGT
44854777 TA TA TA TA TA TA -A TA TA -A TA TA -A TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
44854814 -A TA TA T- TA -A TA -A TA -A TCA T- TA CT- TA CA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA -TA TA TA TA TA TA TA TA
44854850 TA TA TA TA TA T
1 TA TA TA TA TA T
44854861 TAACTAGAAT
Statistics
Matches: 65, Mismatches: 2, Indels: 30
0.67 0.02 0.31
Matches are distributed among these distances:
1 13 0.20
2 49 0.75
3 3 0.05
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:44854794 original size:5 final size:5
Alignment explanation
Indices: 44854778--44854818 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
44854768 TTCTTTTGTT
44854778 ATATA TATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA
44854819 TTAATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:44854860 original size:15 final size:16
Alignment explanation
Indices: 44854778--44854859 Score: 76
Period size: 15 Copynumber: 4.7 Consensus size: 16
44854768 TTCTTTTGTT
44854778 ATATATATATAATATA
1 ATATATATATAATATA
44854794 ATATA-ATATAATATA
1 ATATATATATAATATA
44854809 ATATAATATATTAATAATA
1 ATAT-ATATA-TAAT-ATA
*
44854828 ATCATTACTTACATATATATA
1 AT-A-TA--TATATA-ATATA
44854849 ATATATATATA
1 ATATATATATA
44854860 TTAACTAGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
15 14 0.25
16 6 0.11
17 8 0.15
18 4 0.07
19 7 0.13
20 3 0.05
21 8 0.15
22 5 0.09
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATATATATAATATA
Found at i:44864994 original size:23 final size:23
Alignment explanation
Indices: 44864950--44864994 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
44864940 TTATCAGTAT
* * *
44864950 CCACCACCACCATGGTACTACCC
1 CCACCACCACCAAGGCAATACCC
*
44864973 CCACCTCCACCAAGGCAATACC
1 CCACCACCACCAAGGCAATACC
44864995 AACACTAGTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.51, G:0.09, T:0.11
Consensus pattern (23 bp):
CCACCACCACCAAGGCAATACCC
Found at i:44873352 original size:30 final size:30
Alignment explanation
Indices: 44873318--44873377 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44873308 ATGAAAATGC
44873318 ATGAGTAAAAAAAATAAGTTTGTTTGTTAT
1 ATGAGTAAAAAAAATAAGTTTGTTTGTTAT
* * *
44873348 ATGAGTCATAAAAGTAAGTTTGTTTGTTAT
1 ATGAGTAAAAAAAATAAGTTTGTTTGTTAT
44873378 GTAAAGGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (30 bp):
ATGAGTAAAAAAAATAAGTTTGTTTGTTAT
Found at i:44873736 original size:38 final size:38
Alignment explanation
Indices: 44873693--44873801 Score: 141
Period size: 38 Copynumber: 2.9 Consensus size: 38
44873683 TTCACTATTT
**
44873693 TGTATGAGTCATAAAAATAAAATTGTTTGTTATGTAAAA
1 TGTATGAGTCATAAAAATAAGTTTGTTTGTTATG-AAAA
*
44873732 -GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGAAAA
1 TGTATGAGTCATAAAAATAAGTTTGTTTGTTATGAAAA
* *
44873769 TGTATGAAT-AAAAAAAGTAAGTTTGTTTGTTAT
1 TGTATGAGTCATAAAAA-TAAGTTTGTTTGTTAT
44873802 ATGAGTCATA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
37 9 0.15
38 53 0.85
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.39
Consensus pattern (38 bp):
TGTATGAGTCATAAAAATAAGTTTGTTTGTTATGAAAA
Found at i:44873937 original size:28 final size:28
Alignment explanation
Indices: 44873896--44873954 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
44873886 TTAATGGTCA
44873896 CAAGACTATCCATGGTTTTCTAACAGTG
1 CAAGACTATCCATGGTTTTCTAACAGTG
* *
44873924 CAAGACTATTCATGGTTTTCTAGCAGTG
1 CAAGACTATCCATGGTTTTCTAACAGTG
44873952 CAA
1 CAA
44873955 TAAATCCAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (28 bp):
CAAGACTATCCATGGTTTTCTAACAGTG
Found at i:44876291 original size:31 final size:31
Alignment explanation
Indices: 44876249--44876381 Score: 83
Period size: 31 Copynumber: 4.3 Consensus size: 31
44876239 TATTTTATTA
*
44876249 TGGTACATGTACTATCATAAAATATCTAATG
1 TGGTACTTGTACTATCATAAAATATCTAATG
* *
44876280 TGGTACTTGTACT-T--TGAAAATATCCAATT
1 TGGTACTTGTACTATCAT-AAAATATCTAATG
* * *** * * * *
44876309 TGGTGCTTGAACTATCAATATGTGTTTTTATTA
1 TGGTACTTGTACTATC-ATA-AAATATCTAATG
* *
44876342 TGGTACTTGTACTTTCATAAAATGTCTAATG
1 TGGTACTTGTACTATCATAAAATATCTAATG
*
44876373 TGGTGCTTG
1 TGGTACTTG
44876382 CACCTTGAAA
Statistics
Matches: 72, Mismatches: 24, Indels: 12
0.67 0.22 0.11
Matches are distributed among these distances:
28 1 0.01
29 22 0.31
30 2 0.03
31 25 0.35
32 4 0.06
33 18 0.25
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (31 bp):
TGGTACTTGTACTATCATAAAATATCTAATG
Found at i:44876372 original size:93 final size:92
Alignment explanation
Indices: 44876170--44876421 Score: 337
Period size: 93 Copynumber: 2.7 Consensus size: 92
44876160 GTATGTATGT
* * * * * *
44876170 TTTCATAAAATTTTAATGTCGTATTTGTATTTTGAAAATGCCCAATGTGGTCCTTGAACTATCAA
1 TTTCATAAAATTCTAATGTGGTACTTGTACTTTGAAAATGTCCAATGTGGTACTTGAACTATCAA
44876235 T-TTGTATTTTATTATGGTACATGTAC
66 TATTGTATTTTATTATGGTACATGTAC
* * * *
44876261 TATCATAAAATATCTAATGTGGTACTTGTACTTTGAAAATATCCAATTTGGTGCTTGAACTATCA
1 TTTCATAAAAT-TCTAATGTGGTACTTGTACTTTGAAAATGTCCAATGTGGTACTTGAACTATCA
*
44876326 ATATGTGT-TTTTATTATGGTACTTGTAC
65 ATAT-TGTATTTTATTATGGTACATGTAC
* * *
44876354 TTTCATAAAATGTCTAATGTGGTGCTTGCACCTTGAAAATGTCCAATGTGGTACTTGAACTATCA
1 TTTCATAAAAT-TCTAATGTGGTACTTGTACTTTGAAAATGTCCAATGTGGTACTTGAACTATCA
44876419 ATA
65 ATA
44876422 CTTTCATAAA
Statistics
Matches: 140, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
91 10 0.07
92 47 0.34
93 80 0.57
94 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (92 bp):
TTTCATAAAATTCTAATGTGGTACTTGTACTTTGAAAATGTCCAATGTGGTACTTGAACTATCAA
TATTGTATTTTATTATGGTACATGTAC
Found at i:44880050 original size:45 final size:45
Alignment explanation
Indices: 44880001--44880156 Score: 118
Period size: 45 Copynumber: 3.3 Consensus size: 45
44879991 GTAATCTCCG
* *
44880001 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCA
1 ATCTACTCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCA
* * * * *
44880046 ATCTACTCCACTGT--AGTCACAGGGAGGTAAAATCTGCCATCTTTGATCTTCA
1 ATCTACTCCACTGTCAAAT-ACAGGGAGATAGAGT-T---ATC----AGCTTCA
* * *
44880098 ATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCA
1 ATCTACTCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCA
*
44880143 ATGTACTCCACTGT
1 ATCTACTCCACTGT
44880157 AGTCAAGGAG
Statistics
Matches: 82, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
43 2 0.02
44 11 0.13
45 30 0.37
48 3 0.04
49 3 0.04
52 19 0.23
53 12 0.15
54 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (45 bp):
ATCTACTCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCA
Found at i:44880363 original size:132 final size:132
Alignment explanation
Indices: 44880217--44880879 Score: 1119
Period size: 132 Copynumber: 5.0 Consensus size: 132
44880207 AGGAAGGCAA
* *
44880217 GATCTACAATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
44880282 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
44880347 AG
131 AG
* * *
44880349 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
44880414 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
44880479 AG
131 AG
** * *
44880481 GATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTAT
1 GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
* * * *
44880546 TTTGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTCCCTACCAATATAGGAAGAC
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
*
44880611 AA
131 AG
*
44880613 GACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
* *
44880678 TTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGAC
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
*
44880743 AA
131 AG
* * *
44880745 GACCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGTGATCTAC
1 GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
* *
44880810 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCTACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
44880875 AG
131 AG
44880877 GAT
1 GAT
44880880 ATGTTCCTTT
Statistics
Matches: 503, Mismatches: 28, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 503 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
GATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
AG
Found at i:44880891 original size:43 final size:44
Alignment explanation
Indices: 44880207--44880882 Score: 384
Period size: 44 Copynumber: 15.4 Consensus size: 44
44880197 TGTCAACTAC
* * * * * * *
44880207 AGGAAGGCAAGATCTACAATCTTCGATCTACTTC-ACGCCAATAC
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * **
44880251 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * * *
44880296 GGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATAT
1 AGGAAGACAAGATATGCATCTTTGATCTACTTCGCCACCAATAT
* * * * * * * *
44880339 AGGAAGATAGGATCTGCTACCTTCGATCTACTTC-ACGCCAATAC
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * **
44880383 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * * *
44880428 GGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATAT
1 AGGAAGACAAGATATGCATCTTTGATCTACTTCGCCACCAATAT
* * * * * * *
44880471 AGGAAGATAGGATCTGTTATCTTTGATCTACTTC-ACGCCAATAC
1 AGGAAGACAAGATATG-CATCTTTGATCTACTTCGCCACCAATAT
* * * * ** * *
44880515 ATGAAGACAAGATCTACTTTCTGCGATCTATTTTGCCACCAATAT
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * * *
44880560 GGGAAGACAAGATCTGCATCGTCGATCCAC-TC-CCTACCAATAT
1 AGGAAGACAAGATATGCATCTTTGATCTACTTCGCC-ACCAATAT
** * * * *
44880603 AGGAAGACAAGACCTACTATCTTTGATCTACTTC-ACGCCAATAC
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * **
44880647 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * * * *
44880692 GGGAAGACAAGATCTGCATCGTCGATCCACTTC-CTACCAATAT
1 AGGAAGACAAGATATGCATCTTTGATCTACTTCGCCACCAATAT
** * * * *
44880735 AGGAAGACAAGACCTACTATCTTTGATCTACTTC-ACGCCAATAC
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * * * *
44880779 ATGAAGACAAGATCTACTTTCTGTGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATATGC-ATCTTTGATCTACTTCGCCACCAATAT
* * *
44880824 GGGAAGACAAGATCTGCATCTTTGATCTACTTC-CTACCAATAT
1 AGGAAGACAAGATATGCATCTTTGATCTACTTCGCCACCAATAT
* *
44880867 AGGAAGATAGGATATG
1 AGGAAGACAAGATATG
44880883 TTCCTTTGAC
Statistics
Matches: 497, Mismatches: 123, Indels: 25
0.77 0.19 0.04
Matches are distributed among these distances:
42 2 0.00
43 112 0.23
44 272 0.55
45 111 0.22
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
AGGAAGACAAGATATGCATCTTTGATCTACTTCGCCACCAATAT
Found at i:44899380 original size:114 final size:114
Alignment explanation
Indices: 44899159--44899594 Score: 369
Period size: 114 Copynumber: 3.8 Consensus size: 114
44899149 CCAACTCTAT
* * * * * *
44899159 GAATCCTGTAACTAATCCTATGGCTAAAGTTGCATCC-C-GGGAGCACGGTGGTACTACCATTCC
1 GAATCCTGTAACTTATCCCATGGCTAAAGTAGCATCCTCAGAGA-CA-AGT-GT--TACAATTCC
* * * * * * * * *
44899222 AGTAGAGACCAACTTAGACCATGTAAAGGATGAAGATTTGTCCAACAACCCCAA
61 AGTAAATACGAATTTAGAACATGTAAAAGATAAAGGTTTATCCAACAACCCCAA
* * * * *
44899276 GAATCTTGTAACTTATCCCAAGGCTGAAGTAGCATCCTCAGAGACAAGTGTTACCATTCCGGTAA
1 GAATCCTGTAACTTATCCCATGGCTAAAGTAGCATCCTCAGAGACAAGTGTTACAATTCCAGTAA
* *
44899341 ATACGAATTTAGAATATGTAAAAGGTAAAGGTTTATCCAACAACCCCAA
66 ATACGAATTTAGAACATGTAAAAGATAAAGGTTTATCCAACAACCCCAA
* * * *
44899390 GAATCCTGTAAGTTATCCCATGGCTAAAGTTGAAT-CTGCAGAGACGAGTGTTACAATTCCAGTA
1 GAATCCTGTAACTTATCCCATGGCTAAAGTAGCATCCT-CAGAGACAAGTGTTACAATTCCAGTA
* * * * ** * *
44899454 GATACGAATTTAGACCATGTAACAGATAACGGTTTGCCCAATAGCCCCAA
65 AATACGAATTTAGAACATGTAAAAGATAAAGGTTTATCCAACAACCCCAA
* * ** ** *
44899504 GAATCCTGTAACTTCTCCTATGGCTAAAGTTA-CATCCTCAGAGAGGAGCATTACCATTCCAGTA
1 GAATCCTGTAACTTATCCCATGGCTAAAG-TAGCATCCTCAGAGACAAGTGTTACAATTCCAGTA
* * *
44899568 GATATGAACTTT-GACCATGTAAAAGAT
65 AATACGAA-TTTAGAACATGTAAAAGAT
44899595 TCCCATGCCA
Statistics
Matches: 263, Mismatches: 50, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
113 2 0.01
114 214 0.81
115 6 0.02
116 2 0.01
117 33 0.13
118 3 0.01
119 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (114 bp):
GAATCCTGTAACTTATCCCATGGCTAAAGTAGCATCCTCAGAGACAAGTGTTACAATTCCAGTAA
ATACGAATTTAGAACATGTAAAAGATAAAGGTTTATCCAACAACCCCAA
Found at i:44904192 original size:12 final size:12
Alignment explanation
Indices: 44904175--44904227 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
44904165 TTTTTAAGCT
44904175 TTTCATCAAGTC
1 TTTCATCAAGTC
*
44904187 TTTCATCAAGTGTT
1 TTTCATCAA--GTC
*
44904201 TTTCATCAAGTT
1 TTTCATCAAGTC
* *
44904213 TTTAATCAAGCC
1 TTTCATCAAGTC
44904225 TTT
1 TTT
44904228 ATCTTTTGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
12 24 0.69
14 11 0.31
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (12 bp):
TTTCATCAAGTC
Found at i:44904206 original size:14 final size:14
Alignment explanation
Indices: 44904174--44904215 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
44904164 CTTTTTAAGC
44904174 TTTTCATCAA--GT
1 TTTTCATCAAGTGT
*
44904186 CTTTCATCAAGTGT
1 TTTTCATCAAGTGT
44904200 TTTTCATCAAGT-T
1 TTTTCATCAAGTGT
44904213 TTT
1 TTT
44904216 AATCAAGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 9 0.35
13 4 0.15
14 13 0.50
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (14 bp):
TTTTCATCAAGTGT
Found at i:44908285 original size:25 final size:24
Alignment explanation
Indices: 44908244--44908305 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
44908234 TCATTTCAAT
*
44908244 TTGGTTTTTAAAATTTAATGGGTA
1 TTGGGTTTTAAAATTTAATGGGTA
* *
44908268 TTGGGTTTTAAAGTTTTAATGGGTT
1 TTGGGTTTTAAA-ATTTAATGGGTA
**
44908293 TTGACTTTTAAAA
1 TTGGGTTTTAAAA
44908306 GTATTGAGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (24 bp):
TTGGGTTTTAAAATTTAATGGGTA
Found at i:44910635 original size:20 final size:20
Alignment explanation
Indices: 44910598--44910636 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44910588 TTATTAGCTT
* * *
44910598 ATAAAATTTTTTATATAAAC
1 ATAAAATATATTAAATAAAC
44910618 ATAAAATATATTAAATAAA
1 ATAAAATATATTAAATAAA
44910637 ATTATAATAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAAAATATATTAAATAAAC
Found at i:44916258 original size:3 final size:3
Alignment explanation
Indices: 44916250--44916306 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
44916240 ATCATTTTAA
* * *
44916250 TAT TAT TAT TAC TAT TA- TAT TA- TAT CAT TAT TAC TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
44916297 TAT TAT TAT T
1 TAT TAT TAT T
44916307 TACTTATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 4 0.09
3 38 0.84
4 3 0.07
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:44916279 original size:22 final size:23
Alignment explanation
Indices: 44916249--44916304 Score: 89
Period size: 22 Copynumber: 2.5 Consensus size: 23
44916239 GATCATTTTA
44916249 ATATTATTATTACTATTA-TATT
1 ATATTATTATTACTATTATTATT
*
44916271 ATATCATTATTACTATTATTATT
1 ATATTATTATTACTATTATTATT
44916294 AT-TTATTATTA
1 ATATTATTATTA
44916305 TTTACTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 25 0.81
23 6 0.19
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATTATTATTACTATTATTATT
Found at i:44916317 original size:22 final size:22
Alignment explanation
Indices: 44916249--44916317 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 22
44916239 GATCATTTTA
44916249 ATATTATTATTAC-TATTATATT
1 ATATTATTATTACTTATT-TATT
*
44916271 ATATCATTATTAC-TATTATTATT
1 ATATTATTATTACTTA-T-TTATT
44916294 ATTTATTATTATTTACTTATTTAT
1 A--TATTATTA-TTACTTATTTAT
44916318 AATTTATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
22 14 0.36
23 6 0.15
24 1 0.03
25 11 0.28
26 5 0.13
27 2 0.05
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (22 bp):
ATATTATTATTACTTATTTATT
Found at i:44916317 original size:25 final size:24
Alignment explanation
Indices: 44916250--44916324 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 24
44916240 ATCATTTTAA
44916250 TATTATTATTAC-TATTATATTATAT
1 TATTATTATTACTTATT-TATTAT-T
* *
44916275 CATTATTACTA-TTA-TTATTATT
1 TATTATTATTACTTATTTATTATT
*
44916297 TATTATTATTTACTTATTTATAATT
1 TATTATTA-TTACTTATTTATTATT
44916322 TAT
1 TAT
44916325 ATACACATGC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 4 0.10
25 21 0.51
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.61
Consensus pattern (24 bp):
TATTATTATTACTTATTTATTATT
Found at i:44916345 original size:22 final size:22
Alignment explanation
Indices: 44916320--44916372 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
44916310 TTATTTATAA
*
44916320 TTTAT-ATACACATGCATATATT
1 TTTATAATACACATACAT-TATT
*
44916342 TTTATAATATACATACATTATT
1 TTTATAATACACATACATTATT
*
44916364 TTTACAATA
1 TTTATAATA
44916373 TATATATACG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (22 bp):
TTTATAATACACATACATTATT
Found at i:44916373 original size:22 final size:23
Alignment explanation
Indices: 44916329--44916374 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
44916319 ATTTATATAC
* *
44916329 ACATGCATATATTTTTATAATAT
1 ACATACATATATTTTTACAATAT
44916352 ACATACAT-TATTTTTACAATAT
1 ACATACATATATTTTTACAATAT
44916374 A
1 A
44916375 TATATACGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (23 bp):
ACATACATATATTTTTACAATAT
Found at i:44916554 original size:25 final size:25
Alignment explanation
Indices: 44916501--44916554 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
44916491 ATCTTATAAA
* *
44916501 ATATATATTTGCATATAATTATATT
1 ATATATATTTGCATATAATTAAATC
44916526 ATATATATTT-C-TATAATTTAAATAC
1 ATATATATTTGCATATAA-TTAAAT-C
44916551 ATAT
1 ATAT
44916555 CCATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 5 0.20
24 6 0.24
25 14 0.56
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.50
Consensus pattern (25 bp):
ATATATATTTGCATATAATTAAATC
Found at i:44922171 original size:18 final size:18
Alignment explanation
Indices: 44922137--44922171 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44922127 AATTGTTATT
*
44922137 TTTTTCTTATATGTTTTC
1 TTTTTCTTATATCTTTTC
*
44922155 TTTTTCTTATTTCTTTT
1 TTTTTCTTATATCTTTT
44922172 TTCAGATCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.11, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTTCTTATATCTTTTC
Found at i:44922873 original size:13 final size:12
Alignment explanation
Indices: 44922855--44922902 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
44922845 TCTTCATTGT
44922855 TTTTGAAAAGTAC
1 TTTTGAAAAGT-C
*
44922868 TTTTGAAAAGTG
1 TTTTGAAAAGTC
*
44922880 TTGTGGAAAAGTTC
1 TT-TTGAAAAG-TC
44922894 TTTTGAAAA
1 TTTTGAAAA
44922903 ATTTGAGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 2 0.07
13 24 0.83
14 3 0.10
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (12 bp):
TTTTGAAAAGTC
Found at i:44923107 original size:24 final size:24
Alignment explanation
Indices: 44923080--44923135 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
44923070 AATATTTTAA
*
44923080 TATATAAT-ATTAATTTTAAATATT
1 TATA-AATAATTAATATTAAATATT
* *
44923104 TATAAGTAATTAATATTAATTATT
1 TATAAATAATTAATATTAAATATT
44923128 TATTAAAT
1 TA-TAAAT
44923136 TTAATTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.08
24 20 0.77
25 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TATAAATAATTAATATTAAATATT
Found at i:44933014 original size:20 final size:21
Alignment explanation
Indices: 44932975--44933037 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
44932965 GCTGAACCAA
*
44932975 TATTTTAATCATTTAATTTTAT
1 TATTTTAATCA-TAAATTTTAT
44932997 TATTTTAATCA-AAATTTTAT
1 TATTTTAATCATAAATTTTAT
*
44933017 TAAATTTTTAT-ATAAATTTTA
1 T--ATTTTAATCATAAATTTTA
44933038 ATAATATATG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 9 0.25
21 1 0.03
22 26 0.72
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTTAATCATAAATTTTAT
Found at i:44935366 original size:3 final size:3
Alignment explanation
Indices: 44935358--44935399 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
44935348 AAATAATGGC
44935358 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
44935400 CTAACGTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:44937160 original size:31 final size:32
Alignment explanation
Indices: 44937120--44937183 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
44937110 TTTGAGAAGA
*
44937120 AAAATCTAGTACTCAGATTTTATGTTTTTAGG
1 AAAATCTAGTACTCAGATTTTATGGTTTTAGG
*
44937152 AAAA-CTAGTACTCGGATTTTATGGTTTTAGG
1 AAAATCTAGTACTCAGATTTTATGGTTTTAGG
44937183 A
1 A
44937184 CAATAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (32 bp):
AAAATCTAGTACTCAGATTTTATGGTTTTAGG
Found at i:44945842 original size:13 final size:13
Alignment explanation
Indices: 44945824--44945849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44945814 ATGTGTTTCA
44945824 TGATTGTTTTGGT
1 TGATTGTTTTGGT
44945837 TGATTGTTTTGGT
1 TGATTGTTTTGGT
44945850 ACGGATCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:44947810 original size:25 final size:25
Alignment explanation
Indices: 44947781--44947828 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
44947771 CAAAAAAAAA
44947781 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
44947806 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
44947829 TATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:44947817 original size:71 final size:70
Alignment explanation
Indices: 44947742--44947873 Score: 228
Period size: 71 Copynumber: 1.9 Consensus size: 70
44947732 TAAGCTCATG
* *
44947742 TTATTACATCAAATAATATCAAAATAACTCAAAAAAAAATTCTATTTTATTACATCAAATAAACT
1 TTATTACATCAAATAATATCAAAATAACTC-AAAAAAAATTATATTTTATTACATAAAATAAACT
44947807 TCTATT
65 TCTATT
*
44947813 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTATATTTTATTACATAAAATAA
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAAATTATATTTTATTACATAAAATAA
44947874 TATCAAAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
70 28 0.48
71 30 0.52
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (70 bp):
TTATTACATCAAATAATATCAAAATAACTCAAAAAAAATTATATTTTATTACATAAAATAAACTT
CTATT
Found at i:44948325 original size:18 final size:18
Alignment explanation
Indices: 44948302--44948341 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
44948292 GACTCAGAAA
* *
44948302 AGGATATATATAAGGGTT
1 AGGATACATATAAGGGCT
44948320 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
44948338 AGGA
1 AGGA
44948342 AACGCACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.30, T:0.25
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:44949224 original size:20 final size:20
Alignment explanation
Indices: 44949187--44949224 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44949177 TTTATTTTTA
*
44949187 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
44949207 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
44949225 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:44950035 original size:22 final size:20
Alignment explanation
Indices: 44949999--44950057 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
44949989 GGCTCGGCTC
44949999 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
44950021 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
44950042 AAATATTTTAAAAATA
1 ATTTATTTTAAAAATA
44950058 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:44950107 original size:10 final size:11
Alignment explanation
Indices: 44950040--44950065 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44950030 AAAAATTAAA
44950040 AAAAATATTTT
1 AAAAATATTTT
44950051 AAAAATATTTT
1 AAAAATATTTT
44950062 AAAA
1 AAAA
44950066 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:44950111 original size:16 final size:16
Alignment explanation
Indices: 44950090--44950133 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
44950080 AACGGTATTT
*
44950090 TAAAAATATTTTAAAA
1 TAAAAATATTTAAAAA
* *
44950106 TAAAAAAATTAAAAAA
1 TAAAAATATTTAAAAA
*
44950122 TAAATATATTTA
1 TAAAAATATTTA
44950134 TTATATCGGG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAAATATTTAAAAA
Found at i:44950708 original size:51 final size:51
Alignment explanation
Indices: 44950647--44950744 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
44950637 AAATTATTTA
44950647 AAATAGGGATTTAAGAGAAATTTAAGAA-GAACTTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTT-AGAAGGAACTTGAGAGCAAATTGAAATT
* * *
44950698 AAATATGGATTTAAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
44950745 GAGAAAATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 3 0.07
51 40 0.93
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAATT
Found at i:44950748 original size:33 final size:34
Alignment explanation
Indices: 44950706--44950782 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
44950696 TTAAATATGG
* * *
44950706 ATTTAAGAGAAATTTTGA-AGGAATTTGAGAGCAA
1 ATTTGAGAGAAA-ATTGAGAGGAAATTGAGAGCAA
*
44950740 A-TTGAGAGAAAATTGAGAGGAAATTGAGAGGAA
1 ATTTGAGAGAAAATTGAGAGGAAATTGAGAGCAA
44950773 ATTTGAGAGA
1 ATTTGAGAGA
44950783 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 4 0.11
33 24 0.65
34 9 0.24
ACGTcount: A:0.45, C:0.01, G:0.29, T:0.25
Consensus pattern (34 bp):
ATTTGAGAGAAAATTGAGAGGAAATTGAGAGCAA
Found at i:44950785 original size:14 final size:11
Alignment explanation
Indices: 44950720--44950781 Score: 81
Period size: 11 Copynumber: 5.6 Consensus size: 11
44950710 AAGAGAAATT
*
44950720 TTGA-AGGAAT
1 TTGAGAGGAAA
*
44950730 TTGAGAGCAAA
1 TTGAGAGGAAA
*
44950741 TTGAGAGAAAA
1 TTGAGAGGAAA
44950752 TTGAGAGGAAA
1 TTGAGAGGAAA
44950763 TTGAGAGGAAA
1 TTGAGAGGAAA
44950774 TTTGAGAG
1 -TTGAGAG
44950782 AGGATTAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.09
11 35 0.76
12 7 0.15
ACGTcount: A:0.44, C:0.02, G:0.32, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:44952521 original size:41 final size:41
Alignment explanation
Indices: 44952476--44952608 Score: 176
Period size: 41 Copynumber: 3.1 Consensus size: 41
44952466 ATGTTAAGGG
44952476 TTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTTAATTA
1 TTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTT-A--A
* * *
44952520 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTCAACTTAA
1 --TTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTTAA
* *
44952563 TTAGGGTTTACAACTTAATTAGGTTAGGGTTTTTAATTTAA
1 TTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTTAA
44952604 TTAGG
1 TTAGG
44952609 TTAGGGTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
41 41 0.52
43 1 0.01
45 1 0.01
46 36 0.46
ACGTcount: A:0.27, C:0.05, G:0.21, T:0.47
Consensus pattern (41 bp):
TTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTTAA
Found at i:44952583 original size:64 final size:67
Alignment explanation
Indices: 44952474--44952621 Score: 239
Period size: 64 Copynumber: 2.2 Consensus size: 67
44952464 GAATGTTAAG
* *
44952474 GGTTAGGGTTTTCAACTTAATTAGGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTTTAATTTA
1 GGTTAGGGTTTTCAACTTAA-TA-GTTAGGGTTTACAACTTAATTAGGTTAGGGTTTTTAATTTA
44952539 ATTA
64 ATTA
44952543 GGTTAGGGTTTTCAACTT-A-A-TTAGGGTTTACAACTTAATTAGGTTAGGGTTTTTAATTTAAT
1 GGTTAGGGTTTTCAACTTAATAGTTAGGGTTTACAACTTAATTAGGTTAGGGTTTTTAATTTAAT
44952605 TA
66 TA
44952607 GGTTAGGGTTTTCAA
1 GGTTAGGGTTTTCAA
44952622 TTTTTATCAC
Statistics
Matches: 77, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
64 57 0.74
66 1 0.01
68 1 0.01
69 18 0.23
ACGTcount: A:0.26, C:0.05, G:0.22, T:0.46
Consensus pattern (67 bp):
GGTTAGGGTTTTCAACTTAATAGTTAGGGTTTACAACTTAATTAGGTTAGGGTTTTTAATTTAAT
TA
Found at i:44952623 original size:23 final size:23
Alignment explanation
Indices: 44952474--44952624 Score: 213
Period size: 23 Copynumber: 6.8 Consensus size: 23
44952464 GAATGTTAAG
*
44952474 GGTTAGGGTTTTCAACTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
44952497 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
44952520 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
44952543 GGTTAGGGTTTTCAACTT-A--A
1 GGTTAGGGTTTTCAATTTAATTA
* *
44952563 --TTAGGGTTTACAACTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
44952584 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
44952607 GGTTAGGGTTTTCAATTT
1 GGTTAGGGTTTTCAATTT
44952625 TTATCACATC
Statistics
Matches: 114, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
18 15 0.13
19 1 0.01
20 1 0.01
21 1 0.01
22 1 0.01
23 95 0.83
ACGTcount: A:0.26, C:0.05, G:0.22, T:0.47
Consensus pattern (23 bp):
GGTTAGGGTTTTCAATTTAATTA
Found at i:44952651 original size:25 final size:25
Alignment explanation
Indices: 44952623--44952983 Score: 271
Period size: 25 Copynumber: 14.9 Consensus size: 25
44952613 GGTTTTCAAT
*
44952623 TTTTATCACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
44952648 TTTTATTACATCAAAT-AA----TA
1 TTTTATTACATCAAATAAACTTCTA
** * * *
44952668 --TTAAAACAACTCAAAAAAATTTCAA
1 TTTTATTAC-A-TCAAATAAACTTCTA
44952693 TTTTTATTACATC-AATAAAACTTCTA
1 -TTTTATTACATCAAAT-AAACTTCTA
*
44952719 TTTTATTACATCATATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
44952744 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
*
44952769 TATTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * * * *
44952792 --AAATAAC-TCAAAAAAATTTCAA
1 TTTTATTACATCAAATAAACTTCTA
44952814 TTTTTATTACATC-AATAAAACTTCTA
1 -TTTTATTACATCAAAT-AAACTTCTA
* *
44952840 TTTTATTACATCATATAAACTTTTA
1 TTTTATTACATCAAATAAACTTCTA
44952865 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
44952890 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * * * *
44952913 --AAATAAC-TCAAAAAAATTTCAA
1 TTTTATTACATCAAATAAACTTCTA
44952935 TTTTTATTACATC-AATAAAACTTCTA
1 -TTTTATTACATCAAAT-AAACTTCTA
*
44952961 TTTTATTACATCAAACAAACTTC
1 TTTTATTACATCAAATAAACTTC
44952984 AAAATATTCA
Statistics
Matches: 266, Mismatches: 38, Indels: 64
0.72 0.10 0.17
Matches are distributed among these distances:
18 5 0.02
19 1 0.00
20 17 0.06
21 18 0.07
22 4 0.02
23 4 0.02
24 10 0.04
25 168 0.63
26 33 0.12
27 1 0.00
28 5 0.02
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.40
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:44952837 original size:121 final size:121
Alignment explanation
Indices: 44952623--44952983 Score: 659
Period size: 121 Copynumber: 3.0 Consensus size: 121
44952613 GGTTTTCAAT
* * *
44952623 TTTTATCACATCAAATAAACTTCTATTTTATTACATCAAATAATATTAAAACAACTCAAAAAAAT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
44952688 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTCTA
66 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTCTA
*
44952744 TTTTATTACATCAAATAAACTTCTATATTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
*
44952809 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTTTA
66 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTCTA
44952865 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
* *
44952930 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCAAACAAACTTC
66 TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTC
44952984 AAAATATTCA
Statistics
Matches: 231, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 231 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.40
Consensus pattern (121 bp):
TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAAT
TTCAATTTTTATTACATCAATAAAACTTCTATTTTATTACATCATATAAACTTCTA
Found at i:44954107 original size:7 final size:7
Alignment explanation
Indices: 44954097--44954128 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
44954087 TTATATACAT
44954097 AATACTA
1 AATACTA
44954104 AATACTA
1 AATACTA
44954111 AATACTA
1 AATACTA
*
44954118 AATACAA
1 AATACTA
44954125 AATA
1 AATA
44954129 TCTATTTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:44954114 original size:14 final size:14
Alignment explanation
Indices: 44954091--44954128 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
44954081 TATTAGTTAT
*
44954091 ATACATAATACTAA
1 ATACAAAATACTAA
*
44954105 ATACTAAATACTAA
1 ATACAAAATACTAA
44954119 ATACAAAATA
1 ATACAAAATA
44954129 TCTATTTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (14 bp):
ATACAAAATACTAA
Done.