Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 153 of 196
Found at i:45173388 original size:57 final size:56
Alignment explanation
Indices: 45173187--45173391 Score: 168
Period size: 57 Copynumber: 3.5 Consensus size: 56
45173177 ATAATTTAAG
*
45173187 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTT-AATA
1 ATAA-TATTATTAAATATAATTTAATTAAAATATATGATTTAATAAAATT-TTAAATA
* * * *
45173244 ATCAATATTATT--ATATGAATTTCCTAAAATCATAATATATGATAGTATAAAATATAATTTGAA
1 AT-AATATTATTAAATAT-AA-TT--T--AATTAAAATATATGAT--T-T--AATAAAATTTTAA
*
45173307 ATC
54 ATA
*
45173310 AT--TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTTAAATA
1 ATAATATTATTAAATATAATTTAATTAAAATATATGATTTAATAAAATTTTAAATA
*
45173364 ATAATAATAATTAAATATAATTTAATTA
1 ATAAT-ATTATTAAATATAATTTAATTA
45173392 TATGAATTTG
Statistics
Matches: 116, Mismatches: 14, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
54 15 0.13
55 4 0.03
56 3 0.03
57 32 0.28
58 2 0.02
59 15 0.13
61 15 0.13
63 10 0.09
64 2 0.02
65 5 0.04
66 13 0.11
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (56 bp):
ATAATATTATTAAATATAATTTAATTAAAATATATGATTTAATAAAATTTTAAATA
Found at i:45173589 original size:181 final size:179
Alignment explanation
Indices: 45173389--45173853 Score: 813
Period size: 181 Copynumber: 2.6 Consensus size: 179
45173379 TATAATTTAA
* * * *
45173389 TTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAATTTAATAATGATGTATAACTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAA-TT
* * *
45173454 CATCAAATTCTTGATAATAAATTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAAT
65 CATAAAATTCTTGATAATAAATTTCTTATATGAATTTATATAATTTAAAACAATGAATATTAAAT
45173519 ATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAAATTTTC
130 ATAATTTAATAATGATATA-AATTTCATAAAATTCTTGATAATAAATTTTC
45173570 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAA-TT
45173635 CATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAACAATGAATATTAAA
65 CATAAAATTCTTGATAATAAA-TTTCTTATATGAATTTATATAATTTAAAACAATGAATATTAAA
45173700 TATAATTTAATAATGATATAAATTTCATAAAATTCTTGATAATAAATTTTC
129 TATAATTTAATAATGATATAAATTTCATAAAATTCTTGATAATAAATTTTC
45173751 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTC
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTC
*
45173816 ATAAAATTCTTAATAATAAATATTCTTATATGAATTTA
66 ATAAAATTCTTGATAATAAAT-TTCTTATATGAATTTA
45173854 CTAAAATCAT
Statistics
Matches: 273, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
179 1 0.00
180 38 0.14
181 173 0.63
182 61 0.22
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (179 bp):
TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTC
ATAAAATTCTTGATAATAAATTTCTTATATGAATTTATATAATTTAAAACAATGAATATTAAATA
TAATTTAATAATGATATAAATTTCATAAAATTCTTGATAATAAATTTTC
Found at i:45173619 original size:91 final size:91
Alignment explanation
Indices: 45173389--45173853 Score: 819
Period size: 90 Copynumber: 5.1 Consensus size: 91
45173379 TATAATTTAA
* * * * *
45173389 TTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAATTTAATAATGATGTATAACTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
*
45173454 CATCAAATTCTTGATAATAAA-TTTC
66 CATAAAATTCTTGATAATAAATTTTC
45173479 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
45173544 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
45173570 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
45173635 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
* *
45173661 TTATATGAATTTATATAATTTAAAACAATGAATATTAAATATAATTTAATAATGATATA-AATTT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
45173725 CATAAAATTCTTGATAATAAATTTTC
66 CATAAAATTCTTGATAATAAATTTTC
45173751 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAA-TT
1 TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
* *
45173815 CATAAAATTCTTAATAATAAATATTC
66 CATAAAATTCTTGATAATAAATTTTC
45173841 TTATATGAATTTA
1 TTATATGAATTTA
45173854 CTAAAATCAT
Statistics
Matches: 361, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
90 207 0.57
91 154 0.43
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTT
CATAAAATTCTTGATAATAAATTTTC
Found at i:45177792 original size:25 final size:25
Alignment explanation
Indices: 45177741--45177794 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
45177731 GTTACTAGAG
* * *
45177741 GTTGTTAGCTATTTTCTTGTTTCTA
1 GTTGTTAGCTACTTCCTTATTTCTA
45177766 GTTGTTAGCTACTTCCTTA-TTCTTA
1 GTTGTTAGCTACTTCCTTATTTC-TA
45177791 GTTG
1 GTTG
45177795 AGTAGTTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.13, C:0.15, G:0.17, T:0.56
Consensus pattern (25 bp):
GTTGTTAGCTACTTCCTTATTTCTA
Found at i:45185085 original size:31 final size:31
Alignment explanation
Indices: 45185050--45185116 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
45185040 AAAACCACTT
45185050 AATAGGCCAATAACTTAAATAAAAACTTTGG
1 AATAGGCCAATAACTTAAATAAAAACTTTGG
*** * *
45185081 AATAGTTGAATGACTTTAATAAAAACTTTGG
1 AATAGGCCAATAACTTAAATAAAAACTTTGG
45185112 AATAG
1 AATAG
45185117 CTCAATGACA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (31 bp):
AATAGGCCAATAACTTAAATAAAAACTTTGG
Found at i:45185124 original size:31 final size:31
Alignment explanation
Indices: 45185057--45185125 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
45185047 CTTAATAGGC
* *
45185057 CAATAACTTAAATAAAAACTTTGGAATAGTT
1 CAATGACTTAAATAAAAACTTTGGAATAGCT
* *
45185088 GAATGACTTTAATAAAAACTTTGGAATAGCT
1 CAATGACTTAAATAAAAACTTTGGAATAGCT
45185119 CAATGAC
1 CAATGAC
45185126 AAAATTATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTGGAATAGCT
Found at i:45185715 original size:17 final size:17
Alignment explanation
Indices: 45185675--45185721 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
45185665 ACCATTGTTA
*
45185675 TTATTTTTA-GAATTTT
1 TTATTTTTATAAATTTT
45185691 TATGATTTTTATAAATTTT
1 T-T-ATTTTTATAAATTTT
45185710 TTATTTTTATAA
1 TTATTTTTATAA
45185722 TTTGAACCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.04
17 11 0.41
18 8 0.30
19 7 0.26
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (17 bp):
TTATTTTTATAAATTTT
Found at i:45190865 original size:21 final size:21
Alignment explanation
Indices: 45190839--45190879 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45190829 AGACGAGCAA
* *
45190839 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
45190860 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
45190880 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:45196272 original size:42 final size:42
Alignment explanation
Indices: 45196183--45196370 Score: 245
Period size: 42 Copynumber: 4.5 Consensus size: 42
45196173 TGATTCAGTA
* * * *
45196183 CACCGGCACTT-AGCTTGCTAGACATATAGTCTGA-AATGTTT
1 CACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
*
45196224 CACCGGCATTAAGCCTGCTAGACGTAAAGTTTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
** * *
45196266 CACCGGCATTAAGCCTGCTAGACGTAAAGTCAAAAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
45196308 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
* * *
45196350 CACTGGCAATAAGCTTGCTAG
1 CACCGGCATTAAGCCTGCTAG
45196371 GCGGTAAGCC
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
40 2 0.02
41 27 0.21
42 99 0.77
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (42 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
Found at i:45197331 original size:4 final size:4
Alignment explanation
Indices: 45197322--45197355 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
45197312 AATACAATAG
45197322 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC
45197356 TAATTTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:45198443 original size:4 final size:4
Alignment explanation
Indices: 45198427--45198456 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
45198417 GGCTGTTACA
*
45198427 TAAC TAGC TAAC TAAC TAAC TAAC TAAC TA
1 TAAC TAAC TAAC TAAC TAAC TAAC TAAC TA
45198457 TTAGATACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (4 bp):
TAAC
Found at i:45199620 original size:32 final size:32
Alignment explanation
Indices: 45199579--45199647 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
45199569 ATTGCAACTT
* * * *
45199579 TTCTATTCTCATTTTCATCAATTGGTTGTTTC
1 TTCTCTTCTCATCTTCATCAATTGATTGCTTC
* *
45199611 TTCTCTTCTCGTCTTCATCAGTTGATTGCTTC
1 TTCTCTTCTCATCTTCATCAATTGATTGCTTC
45199643 TTCTC
1 TTCTC
45199648 CATCTGTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.12, C:0.25, G:0.10, T:0.54
Consensus pattern (32 bp):
TTCTCTTCTCATCTTCATCAATTGATTGCTTC
Found at i:45201729 original size:31 final size:29
Alignment explanation
Indices: 45201680--45201756 Score: 73
Period size: 30 Copynumber: 2.6 Consensus size: 29
45201670 AATGTGTATG
* *
45201680 ATTGAATCAAAATTAAAGTTTCATGGATACA
1 ATTGAA-CCAAATCAAAGTTT-ATGGATACA
* * *
45201711 TTTGAACCACAATCAAAGTTTATGTATATA
1 ATTGAACCA-AATCAAAGTTTATGGATACA
*
45201741 ATTGCACCAAATCAAA
1 ATTGAACCAAATCAAA
45201757 ATTCATGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 7 0.18
30 16 0.42
31 15 0.39
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (29 bp):
ATTGAACCAAATCAAAGTTTATGGATACA
Found at i:45203122 original size:83 final size:84
Alignment explanation
Indices: 45202975--45203166 Score: 289
Period size: 83 Copynumber: 2.3 Consensus size: 84
45202965 TGGATTTACT
* *
45202975 GGCGTTTTTATGTAT-GCGCCGCTATTGGTTTGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCA
1 GGCGTTTCTAT-TATAGCGCCGCTATTGGATTGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCA
45203039 CTAATGTTAAGGTATTTAGC
65 CTAATGTTAAGGTATTTAGC
*
45203059 GGCGTTTCTATTATAGCGCCGCTATTTGATTGGGG-GATAGTGGCGTGTTTTGGTCAATCGCCAC
1 GGCGTTTCTATTATAGCGCCGCTATTGGATTGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCAC
*
45203123 TAATGTTAATGTATTTAGC
66 TAATGTTAAGGTATTTAGC
* * *
45203142 GGCGTTTGGTTTTAAAGCGCCGCTA
1 GGCGTTT-CTATTATAGCGCCGCTA
45203167 AGGTTGGGTT
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 57 0.58
84 42 0.42
ACGTcount: A:0.18, C:0.16, G:0.30, T:0.37
Consensus pattern (84 bp):
GGCGTTTCTATTATAGCGCCGCTATTGGATTGGGGTGATAGTGGCGTGTTTTGGTCAATCGCCAC
TAATGTTAAGGTATTTAGC
Found at i:45204209 original size:21 final size:21
Alignment explanation
Indices: 45204183--45204223 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45204173 GTATGGATTA
45204183 GGGTTTGGGATTAAGGTTTAT
1 GGGTTTGGGATTAAGGTTTAT
* *
45204204 GGGTTTGGGGTTACGGTTTA
1 GGGTTTGGGATTAAGGTTTA
45204224 GGTTTAGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.02, G:0.41, T:0.41
Consensus pattern (21 bp):
GGGTTTGGGATTAAGGTTTAT
Found at i:45204215 original size:28 final size:28
Alignment explanation
Indices: 45204183--45204306 Score: 94
Period size: 28 Copynumber: 4.4 Consensus size: 28
45204173 GTATGGATTA
*
45204183 GGGTTTGGGATTAAGGTTTATGGGTTTG
1 GGGTTTGGGGTTAAGGTTTATGGGTTTG
** * * *
45204211 GGG-TTACGGTTTAGGTTTAGGGGTTAG
1 GGGTTTGGGGTTAAGGTTTATGGGTTTG
* * *
45204238 GGGTTAGGGGTTAAGGATT-TGTGTTTTG
1 GGGTTTGGGGTTAAGGTTTATG-GGTTTG
*
45204266 GGGTTTGGGGTT-TGTGATTTA-GGGTTTG
1 GGGTTTGGGGTTAAG-G-TTTATGGGTTTG
45204294 GGGTTTTGGGGTT
1 GGG-TTTGGGGTT
45204307 TTGGGGTTTG
Statistics
Matches: 72, Mismatches: 18, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
27 23 0.32
28 37 0.51
29 12 0.17
ACGTcount: A:0.11, C:0.01, G:0.45, T:0.43
Consensus pattern (28 bp):
GGGTTTGGGGTTAAGGTTTATGGGTTTG
Found at i:45204222 original size:34 final size:34
Alignment explanation
Indices: 45204184--45204250 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
45204174 TATGGATTAG
* * * *
45204184 GGTTTGGGATTAAGGTTTATGGGTTTGGGGTTAC
1 GGTTTAGGATTAAGGGTTAGGGGTTAGGGGTTAC
* *
45204218 GGTTTAGGTTTAGGGGTTAGGGGTTAGGGGTTA
1 GGTTTAGGATTAAGGGTTAGGGGTTAGGGGTTA
45204251 AGGATTTGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.15, C:0.01, G:0.45, T:0.39
Consensus pattern (34 bp):
GGTTTAGGATTAAGGGTTAGGGGTTAGGGGTTAC
Found at i:45204239 original size:7 final size:7
Alignment explanation
Indices: 45204204--45204250 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
45204194 TAAGGTTTAT
*
45204204 GGGTTTG
1 GGGTTAG
*
45204211 GGGTTAC
1 GGGTTAG
*
45204218 GGTTTA-
1 GGGTTAG
*
45204224 GGTTTAG
1 GGGTTAG
45204231 GGGTTAG
1 GGGTTAG
45204238 GGGTTAG
1 GGGTTAG
45204245 GGGTTA
1 GGGTTA
45204251 AGGATTTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 6 0.17
7 29 0.83
ACGTcount: A:0.13, C:0.02, G:0.49, T:0.36
Consensus pattern (7 bp):
GGGTTAG
Found at i:45204244 original size:20 final size:19
Alignment explanation
Indices: 45204205--45204245 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
45204195 AAGGTTTATG
*
45204205 GGTTTGGGGTTACGGTTTA
1 GGTTTGGGGTTACGGGTTA
*
45204224 GGTTTAGGGGTTAGGGGTTA
1 GGTTT-GGGGTTACGGGTTA
45204244 GG
1 GG
45204246 GGTTAAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.12, C:0.02, G:0.49, T:0.37
Consensus pattern (19 bp):
GGTTTGGGGTTACGGGTTA
Found at i:45204272 original size:7 final size:7
Alignment explanation
Indices: 45204224--45204318 Score: 73
Period size: 7 Copynumber: 13.1 Consensus size: 7
45204214 TTACGGTTTA
45204224 GGTTTAGG
1 GGTTT-GG
*
45204232 GGTTAGG
1 GGTTTGG
*
45204239 GGTTAGG
1 GGTTTGG
**
45204246 GGTTAAG
1 GGTTTGG
* *
45204253 GATTTGT
1 GGTTTGG
*
45204260 GTTTTGG
1 GGTTTGG
45204267 GGTTTGG
1 GGTTTGG
*
45204274 GGTTTGT
1 GGTTTGG
* *
45204281 GATTTAG
1 GGTTTGG
45204288 GGTTTGG
1 GGTTTGG
45204295 GGTTTTGG
1 GG-TTTGG
45204303 GGTTTTGG
1 GG-TTTGG
45204311 GGTTTGG
1 GGTTTGG
45204318 G
1 G
45204319 ATTAAGGTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
7 52 0.73
8 19 0.27
ACGTcount: A:0.08, C:0.00, G:0.48, T:0.43
Consensus pattern (7 bp):
GGTTTGG
Found at i:45204279 original size:21 final size:22
Alignment explanation
Indices: 45204255--45204318 Score: 85
Period size: 21 Copynumber: 2.9 Consensus size: 22
45204245 GGGTTAAGGA
45204255 TTTGTGTTTTGGGGTTTGGGG-
1 TTTGTGTTTTGGGGTTTGGGGT
* *
45204276 TTTGTGATTTAGGGTTTGGGGT
1 TTTGTGTTTTGGGGTTTGGGGT
*
45204298 TTTGGGGTTTTGGGGTTTGGG
1 TTT-GTGTTTTGGGGTTTGGG
45204319 ATTAAGGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 19 0.53
22 3 0.08
23 14 0.39
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (22 bp):
TTTGTGTTTTGGGGTTTGGGGT
Found at i:45204303 original size:8 final size:8
Alignment explanation
Indices: 45204260--45204315 Score: 57
Period size: 8 Copynumber: 7.5 Consensus size: 8
45204250 AAGGATTTGT
45204260 GTTTTGGG
1 GTTTTGGG
45204268 G-TTTGGG
1 GTTTTGGG
*
45204275 G-TTT-GT
1 GTTTTGGG
* *
45204281 GATTTAGG
1 GTTTTGGG
45204289 G-TTTGGG
1 GTTTTGGG
45204296 GTTTTGGG
1 GTTTTGGG
45204304 GTTTTGGG
1 GTTTTGGG
45204312 GTTT
1 GTTT
45204316 GGGATTAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.05
7 19 0.45
8 21 0.50
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (8 bp):
GTTTTGGG
Found at i:45205759 original size:24 final size:24
Alignment explanation
Indices: 45205714--45205759 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
45205704 TGTAATACTG
**
45205714 TTTGTTCATAATATTGTTACTAAT
1 TTTGTTCATAATATTGAAACTAAT
45205738 TTTGTTCATAAGT-TTGAAACTA
1 TTTGTTCATAA-TATTGAAACTA
45205760 TTTGTATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (24 bp):
TTTGTTCATAATATTGAAACTAAT
Found at i:45206042 original size:18 final size:18
Alignment explanation
Indices: 45206019--45206056 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
45206009 ACAATTCATA
45206019 TAGTTTATATCCTGTCTG
1 TAGTTTATATCCTGTCTG
*
45206037 TAGTTTATATCCTGTTTG
1 TAGTTTATATCCTGTCTG
45206055 TA
1 TA
45206057 TCCTATTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (18 bp):
TAGTTTATATCCTGTCTG
Found at i:45206949 original size:24 final size:23
Alignment explanation
Indices: 45206922--45207019 Score: 55
Period size: 24 Copynumber: 4.2 Consensus size: 23
45206912 AAATTTTATA
45206922 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
** *
45206946 ATTTTCTAAAT-A-TTAACATATAT
1 ATTTTAGAAATAATTTAA-ATGT-T
*
45206969 ATTTTCA-ATAATAAATTT---TGTA
1 ATTTT-AGA-AAT-AATTTAAATGTT
45206991 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
45207015 ATTTT
1 ATTTT
45207020 TCTAAATATG
Statistics
Matches: 55, Mismatches: 7, Indels: 24
0.64 0.08 0.28
Matches are distributed among these distances:
20 4 0.07
21 8 0.15
22 10 0.18
23 10 0.18
24 20 0.36
26 1 0.02
27 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTAGAAATAATTTAAATGTT
Found at i:45206966 original size:69 final size:69
Alignment explanation
Indices: 45206853--45207640 Score: 1335
Period size: 69 Copynumber: 11.3 Consensus size: 69
45206843 TTCTAGAAAT
* * *
45206853 TTTTA-AAACTAATTATACATGTTATTTTTCTAAATATTAACATATATATTTTCAGTAATAAATT
1 TTTTAGAAA-TAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATT
45206917 TTATAA
64 TTATAA
45206923 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
*
45206988 GTAA
66 ATAA
*
45206992 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATTT
*
45207057 TGTAA
65 TATAA
* *
45207062 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATCTATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATTT
45207127 TATAA
65 TATAA
45207132 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
*
45207197 GTAA
66 ATAA
*
45207201 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATTT
*
45207266 TGTAA
65 TATAA
*
45207271 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATATATATTTTCAATAATAAATTT
45207336 TATAA
65 TATAA
*
45207341 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
*
45207406 ATGA
66 ATAA
*
45207410 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
*
45207475 GTAA
66 ATAA
*
45207479 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
45207544 ATAA
66 ATAA
* *
45207548 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATGAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
45207613 ATAA
66 ATAA
*
45207617 TTTTAGAAAGAATTGTAAATGTTA
1 TTTTAGAAATAATTGTAAATGTTA
45207641 CATAATTCAA
Statistics
Matches: 695, Mismatches: 20, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
69 401 0.58
70 291 0.42
71 3 0.00
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (69 bp):
TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAAATTTT
ATAA
Found at i:45207130 original size:21 final size:21
Alignment explanation
Indices: 45206897--45207621 Score: 115
Period size: 21 Copynumber: 31.4 Consensus size: 21
45206887 TATTAACATA
* *
45206897 TATATTTTCAGTAATAAATTT
1 TATATTTTAAATAATAAATTT
*
45206918 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45206945 TAT-TTTCTAAATATTAACA-TA
1 TATATTT-TAAATAATAA-ATTT
*
45206966 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
* *
45206987 TGTAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207014 TATTTTTCTAAAT-ATGAACA-TA
1 TATATTT-TAAATAAT-AA-ATTT
*
45207036 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
* *
45207057 TGTAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207084 TATTTTTCTAAAT-ATGAACA-TC
1 TATATTT-TAAATAAT-AA-ATTT
*
45207106 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
45207127 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207154 TAT-TTTCTAAATATTAACA-TA
1 TATATTT-TAAATAATAA-ATTT
*
45207175 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
* *
45207196 TGTAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207223 TATTTTTCTAAAT-ATGAACA-TA
1 TATATTT-TAAATAAT-AA-ATTT
*
45207245 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
* *
45207266 TGTAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207293 TATTTTTCTAAAT-ATGAACA-TA
1 TATATTT-TAAATAAT-AA-ATTT
*
45207315 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
45207336 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207363 TAT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
45207384 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
45207405 TATGATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207432 TAT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
45207453 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
* *
45207474 TGTAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
45207501 TAT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
45207522 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
45207543 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
*
45207570 TAT-TTTCTAAAT-ATGAACA-TC
1 TATATTT-TAAATAAT-AA-ATTT
*
45207591 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
45207612 TATAATTTTA
1 TAT-ATTTTA
45207622 GAAAGAATTG
Statistics
Matches: 507, Mismatches: 90, Indels: 213
0.63 0.11 0.26
Matches are distributed among these distances:
20 11 0.02
21 147 0.29
22 121 0.24
23 5 0.01
24 82 0.16
25 34 0.07
26 18 0.04
27 89 0.18
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (21 bp):
TATATTTTAAATAATAAATTT
Found at i:45207158 original size:24 final size:23
Alignment explanation
Indices: 45207131--45207228 Score: 55
Period size: 24 Copynumber: 4.2 Consensus size: 23
45207121 AAATTTTATA
45207131 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
** *
45207155 ATTTTCTAAAT-A-TTAACATATAT
1 ATTTTAGAAATAATTTAA-ATGT-T
*
45207178 ATTTTCA-ATAATAAATTT---TGTA
1 ATTTT-AGA-AAT-AATTTAAATGTT
45207200 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
45207224 ATTTT
1 ATTTT
45207229 TCTAAATATG
Statistics
Matches: 55, Mismatches: 7, Indels: 24
0.64 0.08 0.28
Matches are distributed among these distances:
20 4 0.07
21 8 0.15
22 10 0.18
23 10 0.18
24 20 0.36
26 1 0.02
27 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTAGAAATAATTTAAATGTT
Found at i:45207231 original size:209 final size:209
Alignment explanation
Indices: 45206853--45207640 Score: 1402
Period size: 209 Copynumber: 3.8 Consensus size: 209
45206843 TTCTAGAAAT
* * * *
45206853 TTTTA-AAACTAATTATACATGTTATTTTTCTAAATATTAACATATATATTTTCAGTAATAAATT
1 TTTTAGAAA-TAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATT
45206917 TTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATA
65 TTATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATA
*
45206982 AATTTTGTAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAA
130 AATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAA
45207047 TAATAAATTTTGTAA
195 TAATAAATTTTGTAA
*
45207062 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATCTATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
45207127 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAA
66 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAA
*
45207192 ATTTTGTAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAAT
131 ATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAAT
45207257 AATAAATTTTGTAA
196 AATAAATTTTGTAA
45207271 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
*
45207336 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAA
66 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAA
* * *
45207401 ATTTTATGATTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATCTATATTTTCAAT
131 ATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAAT
45207465 AATAAATTTTGTAA
196 AATAAATTTTGTAA
* *
45207479 TTTTAGAAATAATTGTAAATGTTA-TTTTCTAAATATTAACATCTATATTTTCAATAATAAATTT
1 TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
* *
45207543 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATGAACATCTATATTTTCAATAATAA
66 TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAA
*
45207608 ATTTTATAATTTTAGAAAGAATTGTAAATGTTA
131 ATTTTATAATTTTAGAAATAATTGTAAATGTTA
45207641 CATAATTCAA
Statistics
Matches: 562, Mismatches: 16, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
207 133 0.24
208 67 0.12
209 359 0.64
210 3 0.01
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (209 bp):
TTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAATAATAAATTT
TATAATTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATATATATTTTCAATAATAA
ATTTTATAATTTTAGAAATAATTGTAAATGTTATTTTTCTAAATATGAACATATATATTTTCAAT
AATAAATTTTGTAA
Found at i:45207367 original size:24 final size:23
Alignment explanation
Indices: 45207340--45207506 Score: 61
Period size: 24 Copynumber: 7.2 Consensus size: 23
45207330 AAATTTTATA
45207340 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
** *
45207364 ATTTTCTAAAT-A-TTAACATCTAT
1 ATTTTAGAAATAATTTAA-ATGT-T
*
45207387 ATTTTCA-ATAATAAATTT-TATG--
1 ATTTT-AGA-AAT-AATTTAAATGTT
45207409 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
** *
45207433 ATTTTCTAAAT-A-TTAACATCTAT
1 ATTTTAGAAATAATTTAA-ATGT-T
*
45207456 ATTTTCA-ATAATAAATTT---TGTA
1 ATTTT-AGA-AAT-AATTTAAATGTT
45207478 ATTTTAGAAATAATTGTAAATGTT
1 ATTTTAGAAATAATT-TAAATGTT
45207502 ATTTT
1 ATTTT
45207507 CTAAATATTA
Statistics
Matches: 105, Mismatches: 14, Indels: 48
0.63 0.08 0.29
Matches are distributed among these distances:
20 8 0.08
21 16 0.15
22 23 0.22
23 18 0.17
24 32 0.30
25 2 0.02
26 2 0.02
27 4 0.04
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTAGAAATAATTTAAATGTT
Found at i:45207774 original size:19 final size:19
Alignment explanation
Indices: 45207750--45207786 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
45207740 ATATAAACTT
45207750 ACATAATACATAACTTATG
1 ACATAATACATAACTTATG
45207769 ACATAATACATAACTTAT
1 ACATAATACATAACTTAT
45207787 ATATAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.16, G:0.03, T:0.32
Consensus pattern (19 bp):
ACATAATACATAACTTATG
Found at i:45207784 original size:47 final size:47
Alignment explanation
Indices: 45207733--45207823 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
45207723 ATTATATAAC
45207733 AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
1 AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
*
45207780 AACTTATATATAAACTTACATAATACATAACTTATTACATAATA
1 AACTTATATATAAACTTACATAATACATAACTTATGACATAATA
45207824 AGTTACGTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.35
Consensus pattern (47 bp):
AACTTATATATAAACTTACATAATACATAACTTATGACATAATACAT
Found at i:45207938 original size:16 final size:16
Alignment explanation
Indices: 45207915--45207968 Score: 81
Period size: 16 Copynumber: 3.3 Consensus size: 16
45207905 GTCGGACTTG
*
45207915 CATAACTTATATAATA
1 CATAACTTACATAATA
*
45207931 CTTAACTTACATAATA
1 CATAACTTACATAATA
45207947 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
45207964 CATAA
1 CATAA
45207969 TAAGTTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
16 28 0.82
17 6 0.18
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:45208054 original size:9 final size:9
Alignment explanation
Indices: 45208036--45208113 Score: 78
Period size: 9 Copynumber: 9.3 Consensus size: 9
45208026 AACTTGTCGG
*
45208036 ACTTGCATA
1 ACTTACATA
*
45208045 ACTTATATA
1 ACTTACATA
*
45208054 A--TACTTA
1 ACTTACATA
45208061 ACTTACATA
1 ACTTACATA
45208070 ACTTACATA
1 ACTTACATA
45208079 A--TACATA
1 ACTTACATA
*
45208086 ACTTACGTA
1 ACTTACATA
45208095 A--TACATA
1 ACTTACATA
45208102 ACTTACATA
1 ACTTACATA
45208111 ACT
1 ACT
45208114 GATATATACT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
7 18 0.32
9 38 0.68
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.35
Consensus pattern (9 bp):
ACTTACATA
Found at i:45208070 original size:25 final size:25
Alignment explanation
Indices: 45208036--45208113 Score: 88
Period size: 25 Copynumber: 3.1 Consensus size: 25
45208026 AACTTGTCGG
* * *
45208036 ACTTGCATAACTTATATAATACTTA
1 ACTTACATAACTTACATAATACATA
45208061 ACTTACATAACTTACATAATACATA
1 ACTTACATAACTTACATAATACATA
*
45208086 ACTTACGTAA--TACATAACTTACATA
1 ACTTACATAACTTACATAA--TACATA
45208111 ACT
1 ACT
45208114 GATATATACT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 7 0.15
25 40 0.85
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.35
Consensus pattern (25 bp):
ACTTACATAACTTACATAATACATA
Found at i:45208083 original size:16 final size:16
Alignment explanation
Indices: 45208064--45208111 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
45208054 ATACTTAACT
45208064 TACATAACTTACATAA
1 TACATAACTTACATAA
*
45208080 TACATAACTTACGTAA
1 TACATAACTTACATAA
45208096 TACATAACTTACATAA
1 TACATAACTTACATAA
45208112 CTGATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:45213740 original size:19 final size:18
Alignment explanation
Indices: 45213707--45213752 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
45213697 GACTATCGTG
*
45213707 TAACTTTTTTTATCATTT
1 TAACTTTTATTATCATTT
45213725 TAACTTTATATTATCATTT
1 TAACTTT-TATTATCATTT
*
45213744 TACCTTTTA
1 TAACTTTTA
45213753 ACATATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (18 bp):
TAACTTTTATTATCATTT
Found at i:45213999 original size:43 final size:44
Alignment explanation
Indices: 45213934--45214293 Score: 155
Period size: 43 Copynumber: 8.3 Consensus size: 44
45213924 AAGCTGCTCA
* * * *
45213934 ATTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTTAA-TGC
1 ATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCAAGTGC
* * * *
45213977 ATTTAGCGGCGTTTTTATGAAAAGCGTCGCTAAAAGTCAAGTTC
1 ATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCAAGTGC
* * * *
45214021 TTTTAGCGGCGTTTGT-GAGAAAATCGTCGCTAAAAGGGT-AGGT-C
1 ATTTAGCGGCGTTTGTAG-GAAAAGCGCCGCTAAAA--GTCAAGTGC
* ** *
45214065 -TTCTAGCGACGTTTGT-GCCTAAAGCGCCGCTAAAGGTCAA---C
1 ATT-TAGCGGCGTTTGTAG-GAAAAGCGCCGCTAAAAGTCAAGTGC
* * * * *
45214106 ATATCTAGTGGCGTTTGTA-AATAAAGCGCCGCT-ATAGGCTAA-TGT
1 AT-T-TAGCGGCGTTTGTAGGA-AAAGCGCCGCTAAAAGTC-AAGTGC
* * *
45214151 ATTTTGCGGCGTTTGTAGTG-AAAGCGCCGCTAAAAGTC-AGGGT
1 ATTTAGCGGCGTTTGTAG-GAAAAGCGCCGCTAAAAGTCAAGTGC
* * * *** *
45214194 TTTTAGCGACGTTTGTTGTTTAAGCGCCGCTAAAGGTCAAG-G-
1 ATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCAAGTGC
* * * *
45214236 TTTATAGTGCCGTTTGTAGTAAAAGCGCCGCT-AAAGCTCAAGCT-C
1 ATT-TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAG-TCAAG-TGC
45214281 -TTTAGCGGCGTTT
1 ATTTAGCGGCGTTT
45214294 AGATTAAAAC
Statistics
Matches: 243, Mismatches: 50, Indels: 48
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.00
42 13 0.05
43 155 0.64
44 67 0.28
45 5 0.02
46 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
ATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCAAGTGC
Found at i:45214072 original size:44 final size:45
Alignment explanation
Indices: 45213980--45214081 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
45213970 TTAATGCATT
* * * *
45213980 TAGCGGCGTTT-TTATGAAAAGCGTCGCTAAAAGTCAAGTTCTTT
1 TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
* **
45214024 TAGCGGCGTTTGTGA-GAAAATCGTCGCTAAAAGGGTAGGTCTTC
1 TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
*
45214068 TAGCGACGTTTGTG
1 TAGCGGCGTTTGTG
45214082 CCTAAAGCGC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 47 0.96
45 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (45 bp):
TAGCGGCGTTTGTGATGAAAAGCGTCGCTAAAAGGCAAGGTCTTC
Found at i:45214289 original size:129 final size:127
Alignment explanation
Indices: 45213996--45214293 Score: 293
Period size: 129 Copynumber: 2.3 Consensus size: 127
45213986 CGTTTTTATG
* * *
45213996 AAAAGCGTCGCTAAAAG-TCAAGTTCTTTTAGCGGCGTTTGTGAGAAAATCGTCGCTAAAAGGGT
1 AAAAGCGCCGCT-AAAGCTCAAG-TC-TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAA-GGT
* *
45214060 AGGTCTTCTAGCGACGTTTGTGCCTAAAGCGCCGCTAAAGGTCAACATATCTAGTGGCGTTTGTA
62 AGGTCTTCTAGCGACGTTTGTGCCTAAAGCGCCGCTAAAGGTCAACATATATAGTGCCGTTTGTA
45214125 A
127 A
* * * *
45214126 ATAAAGCGCCGCTATAGGCT-AATGTATTTTGCGGCGTTTGT-AGTGAAAGCGCCGCTAAAA-GT
1 A-AAAGCGCCGCTA-AAGCTCAA-GTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAAGGT
* * * ** *
45214188 CAGGGT-TTTTAGCGACGTTTGTTG-TTTAAGCGCCGCTAAAGGTCAAGGTTTATAGTGCCGTTT
62 -A-GGTCTTCTAGCGACGTTTG-TGCCTAAAGCGCCGCTAAAGGTCAACATATATAGTGCCGTTT
*
45214251 GTAGT
124 GTA-A
45214256 AAAAGCGCCGCTAAAGCTCAAGCTCTTTAGCGGCGTTT
1 AAAAGCGCCGCTAAAGCTCAAG-TCTTTAGCGGCGTTT
45214294 AGATTAAAAC
Statistics
Matches: 138, Mismatches: 19, Indels: 23
0.77 0.11 0.13
Matches are distributed among these distances:
128 7 0.05
129 79 0.57
130 35 0.25
131 15 0.11
132 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (127 bp):
AAAAGCGCCGCTAAAGCTCAAGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGGTAGGT
CTTCTAGCGACGTTTGTGCCTAAAGCGCCGCTAAAGGTCAACATATATAGTGCCGTTTGTAA
Found at i:45214861 original size:16 final size:16
Alignment explanation
Indices: 45214830--45214859 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45214820 TTTAAAATAT
45214830 ATATTTATATTATTTA
1 ATATTTATATTATTTA
45214846 ATATTTA-ATTATTT
1 ATATTTATATTATTT
45214860 TATTTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATATTTATATTATTTA
Found at i:45218355 original size:9 final size:9
Alignment explanation
Indices: 45218341--45218416 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
45218331 GTAGTTATTC
45218341 AATTCGGTT
1 AATTCGGTT
45218350 AATTCGGTT
1 AATTCGGTT
* *
45218359 AATTTGATT
1 AATTCGGTT
* *
45218368 AATTTGGCT
1 AATTCGGTT
45218377 AATTCAGG-T
1 AATTC-GGTT
*
45218386 AATTAGGTT
1 AATTCGGTT
45218395 AATTCGGTT
1 AATTCGGTT
45218404 AATTCGGTT
1 AATTCGGTT
45218413 AATT
1 AATT
45218417 TTTAACCAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
8 2 0.03
9 54 0.93
10 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:45220329 original size:39 final size:39
Alignment explanation
Indices: 45220286--45220366 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
45220276 ATATAGTTTG
*
45220286 GTTTTGGTATAGTATTCACCTTATTGATTTTTGTGACAT
1 GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
45220325 GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
1 GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
45220364 GTT
1 GTT
45220367 ATGTTAGCCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.51
Consensus pattern (39 bp):
GTTTTGGTATAGTAGTCACCTTATTGATTTTTGTGACAT
Found at i:45226344 original size:26 final size:26
Alignment explanation
Indices: 45226286--45226345 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
45226276 GTCTCGATAT
* * *
45226286 ATGGCTCTTCGTGAGCTTCTCGATTA
1 ATGGCTCTTCGTAAGCTTCCCAATTA
** *
45226312 AAAGCTCTTTGTAAGCTTCCCAATTA
1 ATGGCTCTTCGTAAGCTTCCCAATTA
45226338 ATGGCTCT
1 ATGGCTCT
45226346 CCGGAGCTAC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (26 bp):
ATGGCTCTTCGTAAGCTTCCCAATTA
Found at i:45226523 original size:25 final size:25
Alignment explanation
Indices: 45226443--45226540 Score: 92
Period size: 25 Copynumber: 4.0 Consensus size: 25
45226433 ATTGGCTCGC
* * *
45226443 ATGAGCTCCCTG-AATATGGCTCTT
1 ATGAGCTTCCTGTTATATGGCTCAT
* ** *
45226467 ATGAGCTTCCTATTATACAGCCCGA-
1 ATGAGCTTCCTGTTATATGGCTC-AT
*
45226492 ATAAGCTTCCTGTTATATGGCTCAT
1 ATGAGCTTCCTGTTATATGGCTCAT
*
45226517 ATGAGCTTCTTGTTATATGGCTCA
1 ATGAGCTTCCTGTTATATGGCTCA
45226541 AGAGAGGGCT
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
24 11 0.19
25 46 0.81
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATATGGCTCAT
Found at i:45228611 original size:83 final size:83
Alignment explanation
Indices: 45228472--45228637 Score: 287
Period size: 83 Copynumber: 2.0 Consensus size: 83
45228462 GAAATGTCTA
* * *
45228472 TTCGGAGAGTTGATTGATAGAAACGACAAGACTACCGTATATTGTGATAGTCAAAGTGTCATACA
1 TTCGGAGAGCTAATTGATAGAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
*
45228537 TCTTACGAAAGTACAAAG
66 TCTCACGAAAGTACAAAG
*
45228555 TTCGGAGAGCTAATTGATAGAAATGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
1 TTCGGAGAGCTAATTGATAGAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
45228620 TCTCACGAAAGTACAAAG
66 TCTCACGAAAGTACAAAG
45228638 CACTCTAGCT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (83 bp):
TTCGGAGAGCTAATTGATAGAAACGACAAGACTACCATATATTGTGATAGTCAAAGTGTCATACA
TCTCACGAAAGTACAAAG
Found at i:45230141 original size:30 final size:31
Alignment explanation
Indices: 45230094--45230151 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
45230084 ATCTTTATGG
45230094 TTTTTAAAAAGACTAAATTAAAATTTTAACA
1 TTTTTAAAAAGACTAAATTAAAATTTTAACA
* *
45230125 TTTTT-AAAAGATTAAATTATAATTTTA
1 TTTTTAAAAAGACTAAATTAAAATTTTA
45230152 CCATATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (31 bp):
TTTTTAAAAAGACTAAATTAAAATTTTAACA
Found at i:45230320 original size:34 final size:34
Alignment explanation
Indices: 45230276--45230341 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
45230266 CGGTAAAATA
*
45230276 TTTTCCGTAAAATGATTT-CTAGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACT-GAAAATATTTTAC
*
45230310 TTTTCTGTAAAATGATTTACTGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAATATTTT
45230342 TTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (34 bp):
TTTTCCGTAAAATGATTTACTGAAAATATTTTAC
Found at i:45230456 original size:18 final size:18
Alignment explanation
Indices: 45230429--45230472 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
45230419 TTTTTACATA
45230429 TATATATT-AATAAATTTT
1 TATATATTAAAT-AATTTT
* *
45230447 TATATTTTAAATTATTTT
1 TATATATTAAATAATTTT
45230465 TATATATT
1 TATATATT
45230473 GTTTTTACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATATATTAAATAATTTT
Found at i:45230619 original size:34 final size:34
Alignment explanation
Indices: 45230576--45230640 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
45230566 ACAACTAAAA
45230576 TCAATATTTGTAATTGTGTTAAAA-TAATAATAC
1 TCAATATTTGTAATTGTGTTAAAAGTAATAATAC
45230609 TCAATTATTTGTAATTGTGTTAAAAGTAATAA
1 TCAA-TATTTGTAATTGTGTTAAAAGTAATAA
45230641 AAAACAAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 4 0.13
34 20 0.67
35 6 0.20
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.43
Consensus pattern (34 bp):
TCAATATTTGTAATTGTGTTAAAAGTAATAATAC
Found at i:45231224 original size:12 final size:12
Alignment explanation
Indices: 45231207--45231233 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45231197 AGCAAATAAA
45231207 TCATATAGGACT
1 TCATATAGGACT
45231219 TCATATAGGACT
1 TCATATAGGACT
45231231 TCA
1 TCA
45231234 GCAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (12 bp):
TCATATAGGACT
Found at i:45231290 original size:19 final size:19
Alignment explanation
Indices: 45231266--45231318 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
45231256 CATATAGGAT
45231266 TTCAGCAAATAAACACATC
1 TTCAGCAAATAAACACATC
***
45231285 TTCAGCTTCTTAGAACACATC
1 TTCAGC-AAATA-AACACATC
*
45231306 TTCAGGAAATAAA
1 TTCAGCAAATAAA
45231319 TCATTAAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 4
0.69 0.19 0.11
Matches are distributed among these distances:
19 8 0.32
20 4 0.16
21 13 0.52
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (19 bp):
TTCAGCAAATAAACACATC
Found at i:45232525 original size:17 final size:17
Alignment explanation
Indices: 45232492--45232534 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
45232482 AGTGGCCCAG
*
45232492 CAAAACTAACCTAAGCC
1 CAAAACAAACCTAAGCC
* *
45232509 CAATACAAACCTCAGCC
1 CAAAACAAACCTAAGCC
45232526 CAAAACAAA
1 CAAAACAAA
45232535 AACAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.35, G:0.05, T:0.09
Consensus pattern (17 bp):
CAAAACAAACCTAAGCC
Found at i:45244498 original size:89 final size:88
Alignment explanation
Indices: 45244314--45244548 Score: 231
Period size: 89 Copynumber: 2.7 Consensus size: 88
45244304 TATTGGTAGC
* * ** * * * * *
45244314 GAAGTGGATCGAATATACCAGATCTTGCCTTCCCATACTAGTGGCGAAGCAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATACCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATC-AAAAAAACA
* **
45244379 GATCTTATCTTCATGTACTGGCGT
65 GATCTTATCTCCACATACTGGCGT
45244403 GAAGTAGATC-AGAGATACCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACA
1 GAAGTAGATCGA-AGATACCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACA
* * *
45244467 GATCTTGTCTCCCCATACTGGTGGT
65 GATCTTATCTCCACATACTGG-CGT
* * * *** *
45244492 GGAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGG-CGTGAAGTAGATCAAA
1 GAAGTAGATCGAAGATACCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCAAA
45244549 GATAATAGGT
Statistics
Matches: 121, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
88 39 0.32
89 81 0.67
90 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (88 bp):
GAAGTAGATCGAAGATACCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCAAAAAAACAG
ATCTTATCTCCACATACTGGCGT
Found at i:45244567 original size:44 final size:45
Alignment explanation
Indices: 45244359--45244572 Score: 186
Period size: 44 Copynumber: 4.8 Consensus size: 45
45244349 TACTAGTGGC
* * *
45244359 GAAGCAGATCGAAGA-AAGCAGATCTTATCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGATAA-CAGATCTTATCTTCATATACTGGTCGT
* * ** *
45244403 GAAGTAGATCAGAGATACCAGATCTTATCTTCCCATACTGGTGGT
1 GAAGTAGATCAAAGATAACAGATCTTATCTTCATATACTGGTCGT
* * * ** *
45244448 GAAGTAGATCAAA-AAAACAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGATAACAGATCTTATCTTCATATACTGGTCGT
* * *
45244492 GGAGTAGATCGAAGA-AAGCAGATCTTATCTTCATGTACTGG-CGT
1 GAAGTAGATCAAAGATAA-CAGATCTTATCTTCATATACTGGTCGT
* * * *
45244536 GAAGTAGATCAAAGATAATAGGTCCTGTCTTCATATA
1 GAAGTAGATCAAAGATAACAGATCTTATCTTCATATA
45244573 TCGGTAACGA
Statistics
Matches: 137, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
44 101 0.74
45 36 0.26
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (45 bp):
GAAGTAGATCAAAGATAACAGATCTTATCTTCATATACTGGTCGT
Found at i:45244650 original size:133 final size:133
Alignment explanation
Indices: 45244287--45244633 Score: 417
Period size: 133 Copynumber: 2.6 Consensus size: 133
45244277 TGAAAAGCAG
* * *
45244287 CAGATCATGTCTTCCTATATTGGTAGCGAAGTGGATCGAATATACCAGATCTTGCCTTCCCATAC
1 CAGATCCTGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATA-CAGATCTTGTCTTCCCATAC
* * *
45244352 TAGTGGCGAAGCAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAGAG
65 TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAAAG
*
45244417 ATAC
130 ATAA
* * * * * * * * * *
45244421 CAGATCTTATCTTCCCATA-CTGGTGGTGAAGTAGATCAAAAAAACAGATCTTGTCTCCCCATAC
1 CAGATCCTGTCTTCCTATATC-GGTAGCGAAGTGGATCGAATATACAGATCTTGTCTTCCCATAC
* *
45244485 TGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAAAG
65 TGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAAAG
45244550 ATAA
130 ATAA
* * * * * * * *
45244554 TAGGTCCTGTCTTCATATATCGGTAACGAGGTGGATCGAATATACATATTTTATCTTCCCATACT
1 CAGATCCTGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATACAGATCTTGTCTTCCCATACT
*
45244619 GGTGGCAAAGTAGAT
66 GGTGGCGAAGTAGAT
45244634 TGAAAATTAC
Statistics
Matches: 172, Mismatches: 39, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
133 138 0.80
134 34 0.20
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (133 bp):
CAGATCCTGTCTTCCTATATCGGTAGCGAAGTGGATCGAATATACAGATCTTGTCTTCCCATACT
GGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCAAAGA
TAA
Found at i:45245783 original size:24 final size:23
Alignment explanation
Indices: 45245756--45245814 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
45245746 TTAAGGTGAA
45245756 ATTTGATTTTTTTTTCTTTT-TGTT
1 ATTT-ATTTTTTTTTCTTTTAT-TT
*
45245780 ATTT-TCTATTTATTTCTTTTATTT
1 ATTTAT-T-TTTTTTTCTTTTATTT
45245804 ATTTATTTTTT
1 ATTTATTTTTT
45245815 CGTTTTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
22 1 0.03
23 4 0.14
24 22 0.76
25 2 0.07
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (23 bp):
ATTTATTTTTTTTTCTTTTATTT
Found at i:45263166 original size:7 final size:7
Alignment explanation
Indices: 45263148--45263177 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
45263138 TATTAATATT
45263148 TTTAATAA
1 TTTAA-AA
45263156 TTTAAAA
1 TTTAAAA
45263163 TTTAAAA
1 TTTAAAA
45263170 TTTAAAA
1 TTTAAAA
45263177 T
1 T
45263178 GATATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTTAAAA
Found at i:45274288 original size:16 final size:16
Alignment explanation
Indices: 45274267--45274301 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45274257 ATATAAAAAA
* *
45274267 AAATATATGTATGTAT
1 AAATATATATATATAT
45274283 AAATATATATATATAT
1 AAATATATATATATAT
45274299 AAA
1 AAA
45274302 ACATTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (16 bp):
AAATATATATATATAT
Found at i:45274373 original size:27 final size:23
Alignment explanation
Indices: 45274341--45274397 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 23
45274331 AAAAATGTGT
45274341 ATGTATGTGCAGGTATGCATTATAAAA
1 ATGTATGTGCA--TAT--ATTATAAAA
*
45274368 ATGTATGTGTATATATTATAAAA
1 ATGTATGTGCATATATTATAAAA
45274391 ATGTATG
1 ATGTATG
45274398 AATGTATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 16 0.55
25 3 0.10
27 10 0.34
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (23 bp):
ATGTATGTGCATATATTATAAAA
Found at i:45274379 original size:23 final size:23
Alignment explanation
Indices: 45274353--45274397 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
45274343 GTATGTGCAG
*
45274353 GTATGCATTATAAAAATGTATGT
1 GTATACATTATAAAAATGTATGT
*
45274376 GTATATATTATAAAAATGTATG
1 GTATACATTATAAAAATGTATG
45274398 AATGTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (23 bp):
GTATACATTATAAAAATGTATGT
Found at i:45274405 original size:23 final size:23
Alignment explanation
Indices: 45274359--45274412 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
45274349 GCAGGTATGC
**
45274359 ATTATAAAAATGTATGTGTATAT
1 ATTATAAAAATGTATGAATATAT
*
45274382 ATTATAAAAATGTATGAATGTAT
1 ATTATAAAAATGTATGAATATAT
45274405 ATATATAA
1 AT-TATAA
45274413 CAAAATTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTATAAAAATGTATGAATATAT
Found at i:45274468 original size:11 final size:11
Alignment explanation
Indices: 45274446--45274475 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
45274436 TAAATGAGTA
45274446 AATAATAATAAT
1 AATAA-AATAAT
45274458 AATAAAATAAT
1 AATAAAATAAT
45274469 AATAAAA
1 AATAAAA
45274476 GAACAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:45276487 original size:81 final size:82
Alignment explanation
Indices: 45276376--45276562 Score: 252
Period size: 81 Copynumber: 2.3 Consensus size: 82
45276366 CTCCACTGCA
* * *
45276376 ACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTATTGTAACTTCAAAGAGATAAGATTTGTGG
1 ACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGG
*
45276441 TTTTAATTCGCTCCACT
66 TTTTAATCCGCTCCACT
* *
45276458 ACTT-AGGGAGATAAGACTT-GATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTG
1 ACTTCAGGGAGATAAGA-TTGGATGCGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTG
45276521 GTTTTAATCCGCTCCACT
65 GTTTTAATCCGCTCCACT
* *
45276539 GCAACTTCAGAGAGATAGGATTGG
1 ---ACTTCAGGGAGATAAGATTGG
45276563 CTTTTTCTGT
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
81 68 0.75
82 6 0.07
84 6 0.07
85 11 0.12
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (82 bp):
ACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTGTGG
TTTTAATCCGCTCCACT
Found at i:45276544 original size:44 final size:44
Alignment explanation
Indices: 45276273--45276683 Score: 250
Period size: 44 Copynumber: 9.7 Consensus size: 44
45276263 GTCTGATGTG
* * * * **
45276273 ATCTGCTCTATTGCAACTTTAGAGAGATAAGATCTATCATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * *
45276317 ATCCGCTTCACTGTAACTTCAG-GAAGATAGGAT-TG-GTTTCTTCA
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGATCTGTGGTT-TT-A
* * ***
45276361 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * *
45276402 ATCTGCTCTATTGTAACTTCAAAGAGATAAGATTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * ***
45276446 AT-TCGCTCCACT---ACTT-AGGGAGATAAGA-CT-T-GATGCG
1 ATCT-GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* *
45276483 ATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
45276527 ATCCGCTCCACTGCAACTTCAGAGAGATAGGAT-TG-GCTTTTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTG-GTTTT-A
* * * * *
45276571 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * *
45276612 ATCTGTTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* *
45276656 ATCCGCTCTACTGCAACTTCAG-GAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
45276684 GGATTGGCTT
Statistics
Matches: 275, Mismatches: 68, Indels: 49
0.70 0.17 0.12
Matches are distributed among these distances:
37 11 0.04
38 2 0.01
39 1 0.00
40 14 0.05
41 69 0.25
42 8 0.03
43 23 0.08
44 146 0.53
45 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
Found at i:45276547 original size:210 final size:210
Alignment explanation
Indices: 45276266--45276663 Score: 602
Period size: 210 Copynumber: 1.9 Consensus size: 210
45276256 GCATAAAGTC
* * * *
45276266 TGATGTGATCTGCTCTATTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTTCACTGT
1 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
*
45276331 AACTTCAG-GAAGATAGGATTGG-TTTCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
66 AACTTCAGAG-AGATAGGATTGGCTTT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
* ** * *
45276394 TGGATGCGATCTGCTCTATTGTAACTTCAAAGAGATAAGATTTGTGGTTTTAATTCGCTCCACTA
129 TGGATGCGATCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTA
45276459 CTTAGGGAGATAAGACT
194 CTTAGGGAGATAAGACT
* **
45276476 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGC
1 TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
**
45276541 AACTTCAGAGAGATAGGATTGGCTTTTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
66 AACTTCAGAGAGATAGGATTGGCTTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
* * *
45276606 GATGTGATCTGTTCTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTC
131 GATGCGATCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTC
45276664 TACTGCAACT
Statistics
Matches: 168, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
210 164 0.98
211 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (210 bp):
TGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATCATTTTAATCCGCTCCACTGC
AACTTCAGAGAGATAGGATTGGCTTTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
GATGCGATCTGCTCTACTACAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACT
TAGGGAGATAAGACT
Found at i:45276622 original size:129 final size:127
Alignment explanation
Indices: 45276458--45276711 Score: 420
Period size: 129 Copynumber: 2.0 Consensus size: 127
45276448 TCGCTCCACT
* * *
45276458 ACTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGT
1 ACTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGT
45276523 TTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGCTT-TTTCTGTCTGCTCCACTGCA
66 TTTAATCCGCTCCACTGCAACTTCAG-GAGATAGGATTGGCTTCTTT-TGTCTGCTCCACTGCA
* *
45276586 ACTTCAGGGAGATAAGACTGGATGTGATCTGTTCTACTACAACTTCAGAGAGATAAGATCTGTGG
1 ACTT-AGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGG
*
45276651 TTTTAATCCGCTCTACTGCAACTTCAGGAGATAGGATTGGCTTCTTTTGTCTGCTCCACTG
65 TTTTAATCCGCTCCACTGCAACTTCAGGAGATAGGATTGGCTTCTTTTGTCTGCTCCACTG
45276712 TACCACCAGG
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
128 34 0.29
129 84 0.71
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (127 bp):
ACTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGT
TTTAATCCGCTCCACTGCAACTTCAGGAGATAGGATTGGCTTCTTTTGTCTGCTCCACTGCA
Found at i:45276781 original size:50 final size:50
Alignment explanation
Indices: 45276718--45277310 Score: 450
Period size: 50 Copynumber: 11.9 Consensus size: 50
45276708 ACTGTACCAC
* * *
45276718 CAGGGAAGTAAGATTCACCG-CTGTGGCTTTAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTC-GTAGCTTCAATCTTTTTAATTGCAATGT
* * * *
45276768 CGGGGAAGCAAGATTAGCCGTCGCAGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
* * * * * * * ** * ****
45276818 CGGGGAAGCAAGATTCGCCATCGTAACTTTAATATGTTCCACTGCACCAC
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
*
45276868 CAGGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
* * ** * ** * *
45276918 CAGGGAA-CAAGATTTGCCGTTATAGCTTCAATCTGTTCCACTGC-ATCGC
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAAT-GT
** * *
45276967 CAGGGAAGTAAGATTCGTTGTCGTGGCTTCAATCTTTTTAATTGTAATGT
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
* * ** * *
45277017 CGGGGAA-TAAGATTCGCCGTTGTAGCTTCAAT-TTATTCCACTGC-ATCGC
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTT-TTTAATTGCAAT-GT
* *
45277066 CAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
* * * * ** * *
45277116 CGGGGAA-CAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGC-ATCGC
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAAT-GT
* * * *
45277165 CAGGGAAGTAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
** * * * * * ** * *
45277215 TGGGGAA-CAAGATTCACCATTGTAGCTTCAATCTATTCCACTGC-ATCGG
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAAT-GT
* *
45277264 CAGGGAAGTAAGATTCGTCGTCGTGGCTTCAATCTTTTTAATTGCAA
1 CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAA
45277311 CCTCAGGGGT
Statistics
Matches: 408, Mismatches: 120, Indels: 29
0.73 0.22 0.05
Matches are distributed among these distances:
48 10 0.02
49 140 0.34
50 248 0.61
51 10 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
CAGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTTAATTGCAATGT
Found at i:45276990 original size:99 final size:99
Alignment explanation
Indices: 45276770--45277310 Score: 803
Period size: 99 Copynumber: 5.5 Consensus size: 99
45276760 TGCAATGTCG
* * **
45276770 GGGAAGCAAGATTAGCCGTCGCAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCG
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAA-CAAGATTCG
* * * * * * *
45276835 CCATCGTAACTTTAATATGTTCCACTGCACCACCA
65 CCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* *
45276870 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCAGGGAACAAGATTTGC
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
*
45276935 CGTTATAGCTTCAATCTGTTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
** * *
45276969 GGGAAGTAAGATTCGTTGTCGTGGCTTCAATCTTTTTAATTGTAATGTCGGGGAATAAGATTCGC
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
* *
45277034 CGTTGTAGCTTCAATTTATTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
*
45277068 GGGAAGTAAGATTCACCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
45277133 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
* * * * *
45277167 GGGAAGTAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAACAAGATTCAC
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
* * *
45277232 CATTGTAGCTTCAATCTATTCCACTGCATCGGCA
66 CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
*
45277266 GGGAAGTAAGATTCGTCGTCGTGGCTTCAATCTTTTTAATTGCAA
1 GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAA
45277311 CCTCAGGGGT
Statistics
Matches: 398, Mismatches: 43, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
99 348 0.87
100 50 0.13
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (99 bp):
GGGAAGTAAGATTCGCCGTCGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAACAAGATTCGC
CGTTGTAGCTTCAATCTGTTCCACTGCATCGCCA
Found at i:45282508 original size:105 final size:105
Alignment explanation
Indices: 45282258--45282630 Score: 642
Period size: 105 Copynumber: 3.6 Consensus size: 105
45282248 TAACCGTTAT
* * **
45282258 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
45282323 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* *
45282362 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
45282426 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
45282467 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
45282532 AATCAGCACATAGCAACCCCCTTTTTACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
**
45282572 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
45282631 TTATATACAA
Statistics
Matches: 257, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
104 81 0.32
105 175 0.68
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:45285121 original size:46 final size:46
Alignment explanation
Indices: 45285044--45285161 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 46
45285034 ATATATGTAT
* * **
45285044 TATAAAAATGTATAGATGTACGTATAGTTT-AAGATTATAAAATATA
1 TATAAAAATATATATATGTATATATAGTTTAAAG-TTATAAAATATA
* * * *
45285090 TA-AAAGAATATATGTATGTATATATATTTTAAAGTTGTGAAATATA
1 TATAAA-AATATATATATGTATATATAGTTTAAAGTTATAAAATATA
*
45285136 TATAAAAATATATATATGTATGTATA
1 TATAAAAATATATATATGTATATATA
45285162 AATATATATA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
45 3 0.05
46 50 0.85
47 6 0.10
ACGTcount: A:0.47, C:0.01, G:0.12, T:0.40
Consensus pattern (46 bp):
TATAAAAATATATATATGTATATATAGTTTAAAGTTATAAAATATA
Found at i:45285264 original size:25 final size:26
Alignment explanation
Indices: 45285235--45285288 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
45285225 GCAGGTATGC
45285235 ATTATAAAAATGTATG-TGTATATAT
1 ATTATAAAAATGTATGATGTATATAT
45285260 ATTATAAAAATGTATGAATGTATATAT
1 ATTATAAAAATGTATG-ATGTATATAT
45285287 AT
1 AT
45285289 AACAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 16 0.59
27 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (26 bp):
ATTATAAAAATGTATGATGTATATAT
Found at i:45285295 original size:27 final size:25
Alignment explanation
Indices: 45285240--45285295 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
45285230 TATGCATTAT
* *
45285240 AAAAATGTATGTGTATATATATTAT
1 AAAAATGTATGTGTATATATATAAC
45285265 AAAAATGTATGAATGTATATATATAAC
1 AAAAATGTATG--TGTATATATATAAC
45285292 AAAA
1 AAAA
45285296 TTTGAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
27 16 0.59
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (25 bp):
AAAAATGTATGTGTATATATATAAC
Found at i:45289921 original size:35 final size:34
Alignment explanation
Indices: 45289842--45289922 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 34
45289832 ATGTGGATAC
*
45289842 ATATATATGTATATGAATTGTAAAATATACGAAAA
1 ATATATATGTATATGAATTATAAAATATAC-AAAA
*
45289877 ATATGTATGTATTTATGAATTATAAAATATA-AAAA
1 ATATATATGTA--TATGAATTATAAAATATACAAAA
*
45289912 CTATATATGTA
1 ATATATATGTA
45289923 AAAGAGGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
35 23 0.57
37 17 0.43
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.38
Consensus pattern (34 bp):
ATATATATGTATATGAATTATAAAATATACAAAA
Found at i:45295314 original size:65 final size:66
Alignment explanation
Indices: 45295240--45295371 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
45295230 AAAATAAATA
* *
45295240 AAATTTTATATGCCTTCAACATATAACAAAG-CCTCAATATTTTAAACAGAACAATAAAAATGAC
1 AAATTTTATATGCCTTCAAAATATAACAAAGCCCTCAACATTTTAAACAGAACAATAAAAATGAC
45295304 T
66 T
*
45295305 AAATTTTATATGCCTTCAAAATATAACAAAGCCCTCAACATTTTAAATAGAACAATAAAAATGAC
1 AAATTTTATATGCCTTCAAAATATAACAAAGCCCTCAACATTTTAAACAGAACAATAAAAATGAC
45295370 T
66 T
45295371 A
1 A
45295372 CGGACATTTA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
65 30 0.48
66 33 0.52
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (66 bp):
AAATTTTATATGCCTTCAAAATATAACAAAGCCCTCAACATTTTAAACAGAACAATAAAAATGAC
T
Found at i:45297221 original size:14 final size:14
Alignment explanation
Indices: 45297204--45297243 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
45297194 AAAATTTTAA
45297204 TAAATAAAAATTAT
1 TAAATAAAAATTAT
**
45297218 TAAATATTAATTAT
1 TAAATAAAAATTAT
45297232 TAAATTAAAAAT
1 TAAA-TAAAAAT
45297244 ATGAATATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TAAATAAAAATTAT
Found at i:45297337 original size:18 final size:19
Alignment explanation
Indices: 45297291--45297338 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
45297281 AATAGACTTA
45297291 AAATATTCTATA-AAATTG
1 AAATATTCTATATAAATTG
* *
45297309 AGAGATT-TATATAAATT-
1 AAATATTCTATATAAATTG
45297326 AAATATTCTATAT
1 AAATATTCTATAT
45297339 TTTTCGTACA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (19 bp):
AAATATTCTATATAAATTG
Found at i:45308212 original size:60 final size:58
Alignment explanation
Indices: 45308084--45308216 Score: 153
Period size: 60 Copynumber: 2.2 Consensus size: 58
45308074 CCAATTATTT
*
45308084 TTTTTCTTTTTTGGTCACTCAATTATGAAAAGTTACAAAATGGTCACCCAACTATAAG
1 TTTTTCTTTTTTGGTCACTCAACTATGAAAAGTTACAAAATGGTCACCCAACTATAAG
** * *
45308142 TAAACTTCTTTTTTGGTCAAC-CAACTATGAAAAGTTACAAAATGGTTACTCAACTATTCAA-
1 T--TTTTCTTTTTTGGTC-ACTCAACTATGAAAAGTTACAAAATGGTCACCCAACTA-T-AAG
45308203 TTTTGTCTTTTTTG
1 TTTT-TCTTTTTTG
45308217 TAATGTCTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
58 1 0.02
59 1 0.02
60 54 0.87
61 4 0.06
62 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.41
Consensus pattern (58 bp):
TTTTTCTTTTTTGGTCACTCAACTATGAAAAGTTACAAAATGGTCACCCAACTATAAG
Found at i:45314487 original size:25 final size:25
Alignment explanation
Indices: 45314465--45314659 Score: 152
Period size: 25 Copynumber: 7.9 Consensus size: 25
45314455 TTTAGCTCTT
*
45314465 ATGAGCATCCCGATATATGGCTCAC
1 ATGAGCTTCCCGATATATGGCTCAC
45314490 ATGAGCTTCCCGAT-TAATGGCT--C
1 ATGAGCTTCCCGATAT-ATGGCTCAC
* * *
45314513 TTCGAAGCTTCCCGATAT-TGACTCGC
1 AT-G-AGCTTCCCGATATATGGCTCAC
* * *
45314539 ATGAGCTTCTCGA-ATTTGGCTCTC
1 ATGAGCTTCCCGATATATGGCTCAC
* * * **
45314563 TTGAGCTGCCCG-TTTATGGCTCGT
1 ATGAGCTTCCCGATATATGGCTCAC
*
45314587 ATGAGCTTCTCGATA-ATTGGCTCAC
1 ATGAGCTTCCCGATATA-TGGCTCAC
* * *
45314612 AAGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGATATATGGCTCAC
*
45314637 ATGAGCTTCCCGTTATATGGCTC
1 ATGAGCTTCCCGATATATGGCTC
45314660 GAAAGAGCTT
Statistics
Matches: 134, Mismatches: 25, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
23 4 0.03
24 47 0.35
25 79 0.59
26 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGATATATGGCTCAC
Found at i:45314591 original size:48 final size:50
Alignment explanation
Indices: 45314534--45314645 Score: 138
Period size: 49 Copynumber: 2.3 Consensus size: 50
45314524 CCGATATTGA
* * ** *
45314534 CTCGCATGAGCTTCTCGA-ATTTGGCTCTCTTGAGCTGCCCGTT-TATGG
1 CTCGCATGAGCTTCTCGATAATTGGCTCACAAGAGCTGCCCGTTACATGG
* *
45314582 CTCGTATGAGCTTCTCGATAATTGGCTCACAAGAGCTTCCCGTTACATGG
1 CTCGCATGAGCTTCTCGATAATTGGCTCACAAGAGCTGCCCGTTACATGG
*
45314632 CTCACATGAGCTTC
1 CTCGCATGAGCTTC
45314646 CCGTTATATG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 17 0.32
49 20 0.38
50 16 0.30
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (50 bp):
CTCGCATGAGCTTCTCGATAATTGGCTCACAAGAGCTGCCCGTTACATGG
Found at i:45314666 original size:50 final size:50
Alignment explanation
Indices: 45314467--45314681 Score: 147
Period size: 50 Copynumber: 4.3 Consensus size: 50
45314457 TAGCTCTTAT
* * * * *
45314467 GAGCATCCCGATATATGGCTCACATGAGCTTCCCGATTAA-TGGCTCTTCGA
1 GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCGA-TAATTGGCTC-ACAA
* * * * * * * **
45314518 -AGCTTCCCGATA-TTGACTCGCATGAGCTTCTCGA-ATTTGGCTCTCTT
1 GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCGATAATTGGCTCACAA
* * ** *
45314565 GAGCTGCCCGTT-TATGGCTCGTATGAGCTTCTCGATAATTGGCTCACAA
1 GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCGATAATTGGCTCACAA
*
45314614 GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCG-TTATATGGCTCGA-AA
1 GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCGATAAT-TGGCTC-ACAA
*
45314664 GAGCTTCCTGATTACATG
1 GAGCTTCCCG-TTACATG
45314682 CTTGCACGGG
Statistics
Matches: 132, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
47 3 0.02
48 34 0.26
49 41 0.31
50 46 0.35
51 8 0.06
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.31
Consensus pattern (50 bp):
GAGCTTCCCGTTACATGGCTCACATGAGCTTCCCGATAATTGGCTCACAA
Found at i:45316122 original size:105 final size:101
Alignment explanation
Indices: 45315976--45316205 Score: 241
Period size: 105 Copynumber: 2.2 Consensus size: 101
45315966 ACACATACAT
** * ** * *
45315976 TGCCATGGCCCTGCCATGGTCTTACATTTGTAGTGCCATAACCTAGTTATGGTCTTATT-ATCAG
1 TGCCATGGCCCAACCATGGTCTTACAGTTCAAGTGCCATAACCCAGTTATGGTCTT-TTCATCAA
* * *
45316040 AATGT-CATAGCCCAGATATGGTCTTACACATGTATATATAC
65 AAT-TCCATAGCCCAGATATAGTCTT--ACAT-T-TAAACAC
* *
45316081 TGCCATGGCCCAACCATGGTCTTAC-GTTCAAGATGTCATAACCCAGTTATGGTCTTTTCATTAA
1 TGCCATGGCCCAACCATGGTCTTACAGTTCAAG-TGCCATAACCCAGTTATGGTCTTTTCATCAA
* *
45316145 AATTCCATAGCTCAGCTATAGTCTTACATTTAAACAC
65 AATTCCATAGCCCAGATATAGTCTTACATTTAAACAC
*
45316182 TGCCATGGTCCAACCATGGTCTTA
1 TGCCATGGCCCAACCATGGTCTTA
45316206 TCCGTCAATT
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
101 28 0.26
102 1 0.01
103 4 0.04
104 7 0.07
105 67 0.63
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (101 bp):
TGCCATGGCCCAACCATGGTCTTACAGTTCAAGTGCCATAACCCAGTTATGGTCTTTTCATCAAA
ATTCCATAGCCCAGATATAGTCTTACATTTAAACAC
Found at i:45329678 original size:21 final size:21
Alignment explanation
Indices: 45329653--45329708 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
45329643 CACCGATGTT
*
45329653 TCTAACCTCACCGCTATAA-TA
1 TCTAATCTCACCGCTA-AATTA
*
45329674 TCTAATCTCACCACTAAATTA
1 TCTAATCTCACCGCTAAATTA
*
45329695 ACTAATCTCACCGC
1 TCTAATCTCACCGC
45329709 CACTGTTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.34, C:0.34, G:0.04, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTAAATTA
Found at i:45332143 original size:31 final size:29
Alignment explanation
Indices: 45332100--45332161 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
45332090 TTTTATAAAT
*
45332100 AATTAATATTTAT-TAATTAAAAATATTTAC
1 AATTAATATTTATAT-ATT-AAAATATTAAC
*
45332130 AATTTATATTTTATATATTAAAATATTAAC
1 AATTAATA-TTTATATATTAAAATATTAAC
45332160 AA
1 AA
45332162 CAAGTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 19 0.68
31 8 0.29
32 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
AATTAATATTTATATATTAAAATATTAAC
Found at i:45332347 original size:13 final size:13
Alignment explanation
Indices: 45332331--45332383 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
45332321 TTTAAACCAA
45332331 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
45332344 ACTTCTCAAAATC
1 ACTTTTCAAAAGC
*
45332357 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
45332370 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
45332383 A
1 A
45332384 ATTAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 4 0.12
13 25 0.76
14 4 0.12
ACGTcount: A:0.38, C:0.28, G:0.04, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:45334358 original size:7 final size:7
Alignment explanation
Indices: 45334346--45334371 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45334336 ATTGAGTAAA
45334346 AATATTC
1 AATATTC
45334353 AATATTC
1 AATATTC
45334360 AATATTC
1 AATATTC
45334367 AATAT
1 AATAT
45334372 GAAATTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
AATATTC
Found at i:45337913 original size:14 final size:14
Alignment explanation
Indices: 45337894--45337921 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45337884 TATATTTTTA
45337894 CTTAGTTTTTAATC
1 CTTAGTTTTTAATC
45337908 CTTAGTTTTTAATC
1 CTTAGTTTTTAATC
45337922 ATTTTTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (14 bp):
CTTAGTTTTTAATC
Found at i:45339879 original size:20 final size:21
Alignment explanation
Indices: 45339842--45339883 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
45339832 AGAGTTGATT
45339842 TAATGAAAATGTAAAATTAAC
1 TAATGAAAATGTAAAATTAAC
* *
45339863 TAAT-AAAATTTACAATTAAC
1 TAATGAAAATGTAAAATTAAC
45339883 T
1 T
45339884 TTCATCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (21 bp):
TAATGAAAATGTAAAATTAAC
Found at i:45342708 original size:16 final size:16
Alignment explanation
Indices: 45342687--45342755 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
45342677 TTTGGTTCGC
45342687 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45342703 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45342719 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
45342736 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45342752 TGTA
1 TGTA
45342756 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:45342733 original size:33 final size:32
Alignment explanation
Indices: 45342687--45342755 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
45342677 TTTGGTTCGC
45342687 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
45342719 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
45342752 TGTA
1 TGTA
45342756 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:45342820 original size:44 final size:45
Alignment explanation
Indices: 45342736--45342826 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
45342726 GGATTAGAGG
* * *
45342736 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
45342781 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
45342825 TG
1 TG
45342827 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:45343012 original size:18 final size:19
Alignment explanation
Indices: 45342991--45343027 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
45342981 TTATTATTAA
45342991 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
45343009 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
45343028 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:45343135 original size:59 final size:58
Alignment explanation
Indices: 45343069--45343254 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
45343059 CTCAAATCAT
* *
45343069 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
45343128 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
45343188 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
45343248 AATATAT
1 AATATAT
45343255 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:45343192 original size:120 final size:120
Alignment explanation
Indices: 45342971--45343260 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
45342961 TTAATCATAT
45342971 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
45343036 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
45343093 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
45343157 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
45343213 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
45343261 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:45343704 original size:14 final size:14
Alignment explanation
Indices: 45343685--45343719 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
45343675 ATTTAGTCCT
45343685 ATGTCATACATCCA
1 ATGTCATACATCCA
45343699 ATGTCATACATCCA
1 ATGTCATACATCCA
45343713 ATGTCAT
1 ATGTCAT
45343720 TTGTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (14 bp):
ATGTCATACATCCA
Found at i:45353394 original size:3 final size:3
Alignment explanation
Indices: 45353386--45353423 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
45353376 AGAAGGATGA
45353386 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
45353424 GCTTTTGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:45353595 original size:3 final size:3
Alignment explanation
Indices: 45353587--45353647 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
45353577 TTTGTTTGTG
45353587 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
45353635 TTC TTC TTC TTC T
1 TTC TTC TTC TTC T
45353648 CGTGTACTGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:45358870 original size:25 final size:25
Alignment explanation
Indices: 45358700--45358873 Score: 133
Period size: 25 Copynumber: 7.0 Consensus size: 25
45358690 TGTATTACGA
* * * *
45358700 GAAGCTCTTGCGAGCCAATTATCGG
1 GAAGCTCATGAGAGCCAAATAACGG
* *
45358725 GAAGCTCAT-ACGAGCCAATTATCGG
1 GAAGCTCATGA-GAGCCAAATAACGG
* *
45358750 GAAGCTCAT-ACGAGCCATA-AACGA
1 GAAGCTCATGA-GAGCCAAATAACGG
* * *
45358774 GAAGCTCAAGAAAGCCATTAATTA--G
1 GAAGCTCATGAGAGCCA--AATAACGG
*
45358799 GAAGCTCATGAGAGCCAAATATCGG
1 GAAGCTCATGAGAGCCAAATAACGG
*
45358824 GAAGCTCATGAGAGCCATATAACGG
1 GAAGCTCATGAGAGCCAAATAACGG
* * *
45358849 GATGCTCATAAGAGCTAAATAACGG
1 GAAGCTCATGAGAGCCAAATAACGG
45358874 AACGCTTTTG
Statistics
Matches: 121, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
23 3 0.02
24 16 0.13
25 100 0.83
26 1 0.01
27 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (25 bp):
GAAGCTCATGAGAGCCAAATAACGG
Found at i:45362156 original size:30 final size:30
Alignment explanation
Indices: 45362041--45362196 Score: 135
Period size: 30 Copynumber: 5.2 Consensus size: 30
45362031 GTTTTTTTTG
* * *
45362041 CATTTTAACCCCTATACTTT-TCAAAATTTA
1 CATTTTGACCCCTAAACTTTCTTAAAA-TTA
*
45362071 CATTTTGA-CCCTAAAATTT-TCTAAAATTTA
1 CATTTTGACCCCTAAACTTTCT-TAAAA-TTA
* *
45362101 CATTTTGACCGCAAAACTTTC-TAAAATTA
1 CATTTTGACCCCTAAACTTTCTTAAAATTA
* * *
45362130 CATTTTGACCCTTAGACTTTCTTAAAATTG
1 CATTTTGACCCCTAAACTTTCTTAAAATTA
*
45362160 CACTTTGACCCCTAAAC--TCTTAAGAAATTA
1 CATTTTGACCCCTAAACTTTCTT-A-AAATTA
45362190 CATTTTG
1 CATTTTG
45362197 GCCCATATTT
Statistics
Matches: 103, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
28 4 0.04
29 31 0.30
30 60 0.58
31 8 0.08
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (30 bp):
CATTTTGACCCCTAAACTTTCTTAAAATTA
Found at i:45362167 original size:59 final size:58
Alignment explanation
Indices: 45362059--45362196 Score: 152
Period size: 59 Copynumber: 2.3 Consensus size: 58
45362049 CCCCTATACT
* * *
45362059 TTTCAAAATTTACATTTTGACCCTAAAATTTTCTAAAATTTACATTTTGACCGCAAAAC
1 TTTCAAAA-TTACATTTTGACCCTAAAACTTTCTAAAATTTACACTTTGACCCCAAAAC
* * * *
45362118 TTTCTAAAATTACATTTTGACCCTTAGACTTTCTTAAAA-TTGCACTTTGACCCCTAAAC
1 TTTC-AAAATTACATTTTGACCCTAAAACTTTC-TAAAATTTACACTTTGACCCCAAAAC
*
45362177 TCTTAAGAAATTACATTTTG
1 T-TTCA-AAATTACATTTTG
45362197 GCCCATATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 43 0.64
60 24 0.36
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (58 bp):
TTTCAAAATTACATTTTGACCCTAAAACTTTCTAAAATTTACACTTTGACCCCAAAAC
Found at i:45362764 original size:11 final size:11
Alignment explanation
Indices: 45362744--45362814 Score: 69
Period size: 11 Copynumber: 6.5 Consensus size: 11
45362734 CGACCCGAAG
*
45362744 AAGAAGGAAAA
1 AAGAAAGAAAA
45362755 AAGAAAGAAAA
1 AAGAAAGAAAA
45362766 AAG-AAGTAGAAA
1 AAGAAAG-A-AAA
*
45362778 AAGAAGGAAAA
1 AAGAAAGAAAA
45362789 AAGAAA-AAAA
1 AAGAAAGAAAA
45362799 ATA-AAAG-AAA
1 A-AGAAAGAAAA
45362809 AAGAAA
1 AAGAAA
45362815 AATCAACAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
9 1 0.02
10 18 0.35
11 23 0.45
12 7 0.14
13 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (11 bp):
AAGAAAGAAAA
Found at i:45362778 original size:12 final size:11
Alignment explanation
Indices: 45362744--45362793 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
45362734 CGACCCGAAG
45362744 AAGAAGGAAAA
1 AAGAAGGAAAA
*
45362755 AAGAAAGAAAA
1 AAGAAGGAAAA
*
45362766 AAGAAGTAGAAA
1 AAGAAGGA-AAA
45362778 AAGAAGGAAAA
1 AAGAAGGAAAA
45362789 AAGAA
1 AAGAA
45362794 AAAAAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
11 24 0.71
12 10 0.29
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (11 bp):
AAGAAGGAAAA
Found at i:45362782 original size:23 final size:22
Alignment explanation
Indices: 45362744--45362810 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
45362734 CGACCCGAAG
45362744 AAGAAGGAAAAAAGAAAGAAAA
1 AAGAAGGAAAAAAGAAAGAAAA
* *
45362766 AAGAAGTAGAAAAAGAAGGAAAA
1 AAGAAGGA-AAAAAGAAAGAAAA
*
45362789 AAGAA--AAAAAATAAAAGAAAA
1 AAGAAGGAAAAAA-GAAAGAAAA
45362810 A
1 A
45362811 GAAAAATCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 5 0.13
21 9 0.23
22 7 0.18
23 18 0.46
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (22 bp):
AAGAAGGAAAAAAGAAAGAAAA
Found at i:45362808 original size:31 final size:33
Alignment explanation
Indices: 45362744--45362813 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
45362734 CGACCCGAAG
45362744 AAGAAGGAAAAAAGAAAGAAAAAAGAAGTAGAAA
1 AAGAAGGAAAAAAGAAAGAAAAAAGAAG-AGAAA
45362778 AAGAAGGAAAAAAGAAA-AAAAATA-AA-AGAAA
1 AAGAAGGAAAAAAGAAAGAAAAA-AGAAGAGAAA
45362809 AAGAA
1 AAGAA
45362814 AAATCAACAG
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
31 10 0.29
33 7 0.20
34 18 0.51
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (33 bp):
AAGAAGGAAAAAAGAAAGAAAAAAGAAGAGAAA
Found at i:45362939 original size:11 final size:11
Alignment explanation
Indices: 45362912--45362967 Score: 60
Period size: 12 Copynumber: 4.9 Consensus size: 11
45362902 AAAGCAGCTC
45362912 AAAAAAAACA-
1 AAAAAAAACAG
*
45362922 AACAAAAACAG
1 AAAAAAAACAG
45362933 AAAAAAAACAG
1 AAAAAAAACAG
*
45362944 CAGAAAAAAAAAG
1 -A-AAAAAAACAG
45362957 AGAAAAAAACA
1 A-AAAAAAACA
45362968 AAGCAGGCCC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.23
11 10 0.26
12 11 0.28
13 9 0.23
ACGTcount: A:0.80, C:0.11, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAG
Found at i:45363684 original size:18 final size:17
Alignment explanation
Indices: 45363650--45364013 Score: 163
Period size: 17 Copynumber: 20.2 Consensus size: 17
45363640 AAAAAGAAGA
45363650 AAAAATTCTCGTG-TTTC
1 AAAAATT-TCGTGTTTTC
45363667 AAAGAATTTCGTGTTTTC
1 AAA-AATTTCGTGTTTTC
45363685 AAAAAATTCTCGTGTTTT-
1 -AAAAATT-TCGTGTTTTC
*
45363703 AAAAATTTTTGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
*
45363721 AAAAATTT-TTGTGTTTC
1 AAAAATTTCGTGT-TTTC
*
45363738 AAAAATCCTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
** *
45363756 AAAAATCCCG-GTGCTTC
1 AAAAATTTCGTGT-TTTC
* *
45363773 AAAAAAATTTTGTGTTCTC
1 --AAAAATTTCGTGTTTTC
* * *
45363792 AAAAATTCCAATG--ATC
1 AAAAATTTC-GTGTTTTC
45363808 AAAAATTTTTTTTCGTGTTTTC
1 AAAAA-----TTTCGTGTTTTC
45363830 TAAAAAAATTTCGTG-TTTC
1 ---AAAAATTTCGTGTTTTC
45363849 AAAAATTTTCGTGTTTTTC
1 AAAAA-TTTCGTG-TTTTC
* *
45363868 AACAATTCTCGT-ATTTC
1 AAAAATT-TCGTGTTTTC
*
45363885 AAAAATTTTCGCG-TTTC
1 AAAAA-TTTCGTGTTTTC
** **
45363902 AAAAAAAAATATTGTTTTC
1 --AAAAATTTCGTGTTTTC
* *
45363921 AAAAATTGTCGTGTTCTA
1 AAAAATT-TCGTGTTTTC
*
45363939 AAAAATATTCGTGTTTTT
1 AAAAAT-TTCGTGTTTTC
* *
45363957 AAGAATTTTCGTG-TCTC
1 AA-AAATTTCGTGTTTTC
* *
45363974 TAAAATTCTCGTGTTTTAA
1 AAAAATT-TCGTGTTTT-C
45363993 AAAAATTTCGTGTTTTC
1 AAAAATTTCGTGTTTTC
45364010 AAAA
1 AAAA
45364014 TAAAATTTGT
Statistics
Matches: 264, Mismatches: 44, Indels: 78
0.68 0.11 0.20
Matches are distributed among these distances:
16 21 0.08
17 86 0.33
18 77 0.29
19 59 0.22
20 11 0.04
21 3 0.01
22 2 0.01
25 5 0.02
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTTCGTGTTTTC
Found at i:45363696 original size:36 final size:36
Alignment explanation
Indices: 45363649--45364013 Score: 240
Period size: 36 Copynumber: 10.1 Consensus size: 36
45363639 AAAAAAGAAG
45363649 AAAAAATTCTCGTGTTTCAAAGAA-TTTCGTGTTTTC
1 AAAAAATTCTCGTGTTTCAAA-AATTTTCGTGTTTTC
* *
45363685 AAAAAATTCTCGTGTTTTAAAAATTTTTGTGTTTTC
1 AAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC
* * **
45363721 -AAAAATTTTTGTGTTTCAAAAATCCTCGTGTTTTC
1 AAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC
* * *
45363756 -AAAAA-TCCCGGTGCTTCAAAAAAATTTT-GTGTTCTC
1 AAAAAATTCTC-GTGTTTC--AAAAATTTTCGTGTTTTC
* *
45363792 -AAAAATTC-CAATG-ATCAAAAATTTTTTTTCGTGTTTTC
1 AAAAAATTCTC-GTGTTTCAAAAA----TTTTCGTGTTTTC
45363830 TAAAAAAATT-TCGTGTTTCAAAAATTTTCGTGTTTTTC
1 --AAAAAATTCTCGTGTTTCAAAAATTTTCGTG-TTTTC
* * *
45363868 -AACAATTCTCGTATTTCAAAAATTTTCGCG-TTTC
1 AAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC
* * * * *
45363902 AAAAAAAAATATTGT-TTTCAAAAATTGTCGTGTTCT-
1 --AAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC
* * *
45363938 AAAAAATAT-TCGTGTTTTTAAGAATTTTCGTG-TCTC
1 AAAAAAT-TCTCGTG-TTTCAAAAATTTTCGTGTTTTC
* * *
45363974 -TAAAATTCTCGTGTTTTAAAAAAATTTCGTGTTTTC
1 AAAAAATTCTCGTG-TTTCAAAAATTTTCGTGTTTTC
45364010 AAAA
1 AAAA
45364014 TAAAATTTGT
Statistics
Matches: 259, Mismatches: 42, Indels: 55
0.73 0.12 0.15
Matches are distributed among these distances:
33 5 0.02
34 15 0.06
35 79 0.31
36 98 0.38
37 33 0.13
38 12 0.05
40 2 0.01
41 15 0.06
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (36 bp):
AAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTC
Found at i:45364032 original size:53 final size:53
Alignment explanation
Indices: 45363864--45364050 Score: 147
Period size: 53 Copynumber: 3.5 Consensus size: 53
45363854 TTTTCGTGTT
* * * * * *
45363864 TTTCAACAATTCTCGT-ATTTCAAAAATTTTCGCG-TTTCAAAAAAAAATATTG
1 TTTCAAAAATTCTCGTGTTTTAAAAAAATTTCGTGTTTTCAAAATAAAAT-TTG
* * *
45363916 TTTTCAAAAATTGTCGTGTTCT-AAAAAATATTCGTGTTTTTAAGAAT----TTTCG
1 -TTTCAAAAATTCTCGTGTTTTAAAAAAAT-TTCGTGTTTTCAA-AATAAAATTT-G
*
45363968 TGTCTCTAAAATTCTCGTGTTTTAAAAAAATTTCGTGTTTTCAAAATAAAATTTG
1 T-T-TCAAAAATTCTCGTGTTTTAAAAAAATTTCGTGTTTTCAAAATAAAATTTG
*
45364023 TTTCAAAAA-TCTTCATGTTTTAAAAAAA
1 TTTCAAAAATTC-TCGTGTTTTAAAAAAA
45364051 ATTGTATTTT
Statistics
Matches: 107, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
51 3 0.03
52 8 0.07
53 69 0.64
54 15 0.14
55 7 0.07
56 5 0.05
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (53 bp):
TTTCAAAAATTCTCGTGTTTTAAAAAAATTTCGTGTTTTCAAAATAAAATTTG
Found at i:45371455 original size:10 final size:10
Alignment explanation
Indices: 45371434--45371462 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
45371424 TCCTTTTCCA
45371434 TCATAT-ATC
1 TCATATCATC
45371443 TCATATCATC
1 TCATATCATC
45371453 TCATATCATC
1 TCATATCATC
45371463 ATGTGTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (10 bp):
TCATATCATC
Found at i:45374948 original size:9 final size:9
Alignment explanation
Indices: 45374934--45374968 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
45374924 AACCAACAAC
45374934 AAAAAAACAA
1 AAAAAAAC-A
45374944 AAAAACAACA
1 AAAAA-AACA
45374954 AAAAAAACA
1 AAAAAAACA
45374963 AAAAAA
1 AAAAAA
45374969 GAAAAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 10 0.42
10 11 0.46
11 3 0.12
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:45374980 original size:20 final size:20
Alignment explanation
Indices: 45374928--45374968 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
45374918 AAAAAAAACC
45374928 AACAAC-AAAAAAACAAAAA
1 AACAACAAAAAAAACAAAAA
45374947 AACAACAAAAAAAACAAAAA
1 AACAACAAAAAAAACAAAAA
45374967 AA
1 AA
45374969 GAAAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (20 bp):
AACAACAAAAAAAACAAAAA
Found at i:45375964 original size:76 final size:76
Alignment explanation
Indices: 45375857--45377705 Score: 2151
Period size: 76 Copynumber: 23.6 Consensus size: 76
45375847 CTATGTTTTT
*
45375857 TTTTTCAAAAATTAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
45375922 TTAAATTTCTG
66 TTAAATTTCTG
45375933 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
45375998 TTAAATTTCTG
66 TTAAATTTCTG
* * *
45376009 TTTTTCAAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
1 TTTTTC-----AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTA
*
45376074 TTT-TTTTAAATTTCTATT
60 TTTCTTTTAAATTTC--TG
45376092 TTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
1 TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
45376157 TTTAAATTT-TCG
65 TTTAAATTTCT-G
*
45376169 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGATATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
45376234 TTAAATTTTTG
66 TTAAATTTCTG
* * *
45376245 TTTTTCAAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTAT
1 TTTTTC----AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTAT
* *
45376310 TTTTTTTTAATTTCTG
61 TTCTTTTAAATTTCTG
* *
45376326 TTTTTTTCAAAAATTCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 --TTTTTCAAAAA-TCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTT
45376391 -TTTTAAATTTCTG
63 CTTTTAAATTTCTG
* * **
45376404 TTTTTTTTCAAAAAATCAACTCATAATACAGATGTGAGTTGAGCCTCGGGTCACGCTAAGGTATT
1 ---TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATT
45376469 T-TTTTAATTTAATTTCTG
62 TCTTTT-A---AATTTCTG
* *
45376487 CTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTAT
1 -TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGG---TAT
*
45376552 TTTTAATTTAATTAATTTCTG
61 TTCT--TTT-A--AATTTCTG
* *
45376573 CTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 --TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTT
45376638 -TTTTAATTTAATTTCTG
63 CTTTT-A---AATTTCTG
* * *
45376655 TTTTTTTCAAAAAATCAACTCATAATACAGATGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 --TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTA---
*
45376720 TTTTTTAAATTTAATTAATTTCTG
60 -TTTCT---TTT-A--AATTTCTG
* * *
45376744 CTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTT
1 --TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTT
45376809 -TTTT-AATTTCTG
63 CTTTTAAATTTCTG
* *
45376821 TTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 --TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTT
*
45376886 -TTTTAAATTTCTATTT
63 CTTTTAAATTTC---TG
45376902 TTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
1 TTTTTC-AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
*
45376967 TTTAAATTTCCG
65 TTTAAATTTCTG
* *
45376979 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGTCACGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
**
45377044 TTAAATTTCCA
66 TTAAATTTCTG
*
45377055 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAACCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
45377120 TTAAATTT-TCG
66 TTAAATTTCT-G
* * *
45377131 TTTTTCAAAAATCAACTCATAATACGGAGGTGAGTTGAGCCTCGGGTCATGCCGTGTTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
45377196 TTAAATTTCCG
66 TTAAATTTCTG
*
45377207 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCTGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
45377272 TTAAATTTCTG
66 TTAAATTTCTG
* * * ** *
45377283 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATACCGAGGTATTTCT
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
45377348 TTTAAATTTCTG
65 TTTAAATTTCTG
* * * ** *
45377360 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATACCGAGGTATTTCT
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
45377425 TTTAAATTTCTG
65 TTTAAATTTCTG
* * *
45377437 TTTTTCAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCACGCCGAGGTA--T-T
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
*
45377499 TTTCAA--T-TG
65 TTTAAATTTCTG
* * *
45377508 TTTTTCAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCACGCCGAGGTA--T-T
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
*
45377570 TTTCAA-TTCATG
65 TTTAAATTTC-TG
* * ** * *
45377582 TTTTTCAAAAATTAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGGGCACATGTCGAGGTA---
1 TTTTTCAAAAATCAACTCATAAT-ACAGAGGTGAGTTGAGCCTC-GGG-TCATGCCGAGGTATTT
** *
45377644 -TTTTCGATTTTTG
63 CTTTTAAATTTCTG
* * * * *
45377657 TTTTGCGAAGATCAACTCATAATCCAAGAGGTGAGTTGAGTCTCGGGTC
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTC
45377706 GCACGCCGAG
Statistics
Matches: 1627, Mismatches: 89, Indels: 117
0.89 0.05 0.06
Matches are distributed among these distances:
71 70 0.04
72 2 0.00
73 1 0.00
74 49 0.03
75 47 0.03
76 468 0.29
77 264 0.16
78 53 0.03
79 193 0.12
80 48 0.03
81 139 0.09
82 105 0.06
83 22 0.01
84 11 0.01
85 4 0.00
86 13 0.01
87 64 0.04
89 69 0.04
90 5 0.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
TTAAATTTCTG
Found at i:45377941 original size:30 final size:29
Alignment explanation
Indices: 45377900--45378055 Score: 156
Period size: 30 Copynumber: 5.2 Consensus size: 29
45377890 AGTTTTTTTG
* *
45377900 CATTTTAACCCCTATACTTTTCAAAATTTA
1 CATTTTGACCCCTAAACTTTTCAAAA-TTA
45377930 CATTTTGACCCC-AAACTTTTCTAAAATTTA
1 CATTTTGACCCCTAAACTTTTC-AAAA-TTA
*
45377960 CATTTTGACCCCAAAAC-TTTCTAAAATTA
1 CATTTTGACCCCTAAACTTTTC-AAAATTA
* *
45377989 CATTTTGACCCTTAGAA-TTTCTCAAAATTG
1 CATTTTGACCCCTA-AACTTT-TCAAAATTA
* **
45378019 CACTTTGACCCCTAAACTCTTAAAAAATTA
1 CATTTTGACCCCTAAACT-TTTCAAAATTA
45378049 CATTTTG
1 CATTTTG
45378056 GCCCATATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
29 25 0.23
30 75 0.69
31 8 0.07
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.38
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTTCAAAATTA
Found at i:45378428 original size:20 final size:20
Alignment explanation
Indices: 45378398--45378437 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
45378388 CTACACTTAG
45378398 CAAAGCAAGCAAGAATCCAAA
1 CAAAGCAAGCAA-AATCCAAA
45378419 CAAA-CAAGCAAAATCCAAA
1 CAAAGCAAGCAAAATCCAAA
45378438 AGAAAAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.60, C:0.25, G:0.10, T:0.05
Consensus pattern (20 bp):
CAAAGCAAGCAAAATCCAAA
Found at i:45378457 original size:21 final size:21
Alignment explanation
Indices: 45378428--45378468 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45378418 ACAAACAAGC
* *
45378428 AAAATCCAAAAGAAAAGAGAG
1 AAAACCCAAAAAAAAAGAGAG
45378449 AAAACCCAAAAAAAAAGAGA
1 AAAACCCAAAAAAAAAGAGA
45378469 CAAAGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.12, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAACCCAAAAAAAAAGAGAG
Found at i:45378622 original size:11 final size:11
Alignment explanation
Indices: 45378602--45378697 Score: 106
Period size: 11 Copynumber: 8.5 Consensus size: 11
45378592 CGACCCGAAG
*
45378602 AAGAAGGAAAA
1 AAGAAAGAAAA
45378613 AAGAAAGAAAA
1 AAGAAAGAAAA
*
45378624 AAGAAATAGAAA
1 AAGAAAGA-AAA
*
45378636 AAGAAGGAAAA
1 AAGAAAGAAAA
45378647 AAGAAAGAAAA
1 AAGAAAGAAAA
45378658 AAG-AAGAAGAAA
1 AAGAAAG-A-AAA
*
45378670 AAGAGAGAAAA
1 AAGAAAGAAAA
45378681 AAGAAA-AGAAA
1 AAGAAAGA-AAA
45378692 AAGAAA
1 AAGAAA
45378698 AATCAACAGT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
10 4 0.05
11 51 0.70
12 16 0.22
13 2 0.03
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (11 bp):
AAGAAAGAAAA
Found at i:45378640 original size:23 final size:23
Alignment explanation
Indices: 45378602--45378697 Score: 94
Period size: 23 Copynumber: 4.3 Consensus size: 23
45378592 CGACCCGAAG
*
45378602 AAGAAGGA-AAAAAGAAAGAAAA
1 AAGAAAGAGAAAAAGAAAGAAAA
* *
45378624 AAGAAATAGAAAAAGAAGGAAAA
1 AAGAAAGAGAAAAAGAAAGAAAA
45378647 AAGAAAGA-AAAAAG-AAGAAGAA
1 AAGAAAGAGAAAAAGAAAGAA-AA
*
45378669 AA-AGAGAGAAAAAAGAAA-AGAAA
1 AAGAAAGAG-AAAAAGAAAGA-AAA
45378692 AAGAAA
1 AAGAAA
45378698 AATCAACAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
21 8 0.13
22 16 0.27
23 31 0.52
24 5 0.08
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (23 bp):
AAGAAAGAGAAAAAGAAAGAAAA
Found at i:45378645 original size:34 final size:33
Alignment explanation
Indices: 45378602--45378698 Score: 144
Period size: 34 Copynumber: 2.9 Consensus size: 33
45378592 CGACCCGAAG
45378602 AAGAAGGAAAAAAGAAAGAAAAAAGAAATAGAAA
1 AAGAAGGAAAAAAGAAAGAAAAAAGAAA-AGAAA
45378636 AAGAAGGAAAAAAGAAAGAAAAAAGAAGAAGAAA
1 AAGAAGGAAAAAAGAAAGAAAAAAGAA-AAGAAA
45378670 AAG-AGAGAAAAAAGAAA-AGAAAAAGAAAA
1 AAGAAG-GAAAAAAGAAAGA-AAAAAGAAAA
45378699 ATCAACAGTC
Statistics
Matches: 60, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
33 5 0.08
34 54 0.90
35 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (33 bp):
AAGAAGGAAAAAAGAAAGAAAAAAGAAAAGAAA
Found at i:45378813 original size:11 final size:11
Alignment explanation
Indices: 45378794--45378856 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
45378784 CAAAGCAGCT
45378794 CAAAAAAAAAA
1 CAAAAAAAAAA
*
45378805 CAAACAAAAACA
1 CAAA-AAAAAAA
*
45378817 GAAAAAAAAATA
1 CAAAAAAAAA-A
45378829 GCAGAAAAAAAAA
1 -CA-AAAAAAAAA
* *
45378842 GAGAAAAAAAA
1 CAAAAAAAAAA
45378853 CAAA
1 CAAA
45378857 GCAGGCCCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
11 19 0.47
12 11 0.28
13 2 0.05
14 8 0.20
ACGTcount: A:0.81, C:0.10, G:0.08, T:0.02
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:45378825 original size:12 final size:12
Alignment explanation
Indices: 45378795--45378852 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
45378785 AAAGCAGCTC
*
45378795 AAAAAAAAA-AC
1 AAAAAAAAACAG
*
45378806 AAACAAAAACAG
1 AAAAAAAAACAG
45378818 AAAAAAAAATAGCAG
1 -AAAAAAAA-A-CAG
*
45378833 AAAAAAAAAGAG
1 AAAAAAAAACAG
45378845 AAAAAAAA
1 AAAAAAAA
45378853 CAAAGCAGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 8 0.21
12 11 0.28
13 8 0.21
14 9 0.23
15 3 0.08
ACGTcount: A:0.83, C:0.07, G:0.09, T:0.02
Consensus pattern (12 bp):
AAAAAAAAACAG
Done.