Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 155 of 196
Found at i:45645439 original size:92 final size:91
Alignment explanation
Indices: 45645338--45645599 Score: 272
Period size: 93 Copynumber: 2.8 Consensus size: 91
45645328 TCTTGGCATT
* *
45645338 AGACTCAAGCCCATGTGCCCCAAAAATGGAATCAAATAACTAGTAATTTGTATAACTATTATGGA
1 AGACTCAAGCCCAAGTGCCCCAAAAATGAAATCAAATAACTAGTAATTT-TATAACTATTATGGA
*
45645403 AAATTAAAAATATATTATTGCAATACC
65 AAATTAAAAATATATTATTGCAACACC
* * * * * * *
45645430 AGACTCAAGCCCAAGTGCTCCGAAAATAAAATAAAATAACTAGTAATTTTTTATAATTATTTTGA
1 AGACTCAAGCCCAAGTGCCCCAAAAATGAAATCAAATAACTAGTAA--TTTTATAACTATTATGG
* * * * * **
45645495 AAAATTAAAAAGACATTGTTGTAGCATT
64 AAAATTAAAAATATATTATTGCAACACC
* * * * * * * *
45645523 AGACTGAATCCCAAGTGCCTCAAAAATGAAATCAAATAACTAATAATCTTATAACTAGTCTAGAA
1 AGACTCAAGCCCAAGTGCCCCAAAAATGAAATCAAATAACTAGTAATTTTATAACTATTATGGAA
45645588 AATTAAAAATAT
66 AATTAAAAATAT
45645600 TTTTTAGCAC
Statistics
Matches: 135, Mismatches: 33, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
91 23 0.17
92 40 0.30
93 69 0.51
94 3 0.02
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (91 bp):
AGACTCAAGCCCAAGTGCCCCAAAAATGAAATCAAATAACTAGTAATTTTATAACTATTATGGAA
AATTAAAAATATATTATTGCAACACC
Found at i:45648172 original size:21 final size:21
Alignment explanation
Indices: 45648148--45648187 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
45648138 AACATTTTAC
45648148 TACAAAATA-AAATAAAATTAA
1 TACAAAATAGAAA-AAAATTAA
*
45648169 TACAAAGTAGAAAAAAATT
1 TACAAAATAGAAAAAAATT
45648188 GGATAAGCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
TACAAAATAGAAAAAAATTAA
Found at i:45655938 original size:6 final size:6
Alignment explanation
Indices: 45655927--45655988 Score: 54
Period size: 6 Copynumber: 9.7 Consensus size: 6
45655917 TTTAGCATTT
**
45655927 TTTTAA TTTTAA TTTTAA TTTTAATA TTTTTGT TTTTAA -TTTAA TTGTTACA
1 TTTTAA TTTTAA TTTTAA TTTT-A-A -TTTTAA TTTTAA TTTTAA TT-TTA-A
45655979 TTTTAA TTTT
1 TTTTAA TTTT
45655989 TCTTTTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
5 5 0.11
6 26 0.57
7 7 0.15
8 4 0.09
9 4 0.09
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:45655955 original size:20 final size:20
Alignment explanation
Indices: 45655932--45655988 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
45655922 CATTTTTTTA
45655932 ATTTTAATTTTAATTTTAAT
1 ATTTTAATTTTAATTTTAAT
**
45655952 ATTTTTGTTTTTAA-TTTAAT
1 A-TTTTAATTTTAATTTTAAT
*
45655972 -TGTTACATTTTAATTTT
1 ATTTTA-ATTTTAATTTT
45655989 TCTTTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.10
19 6 0.21
20 10 0.34
21 10 0.34
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTAATTTTAATTTTAAT
Found at i:45655956 original size:26 final size:26
Alignment explanation
Indices: 45655926--45655988 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
45655916 ATTTAGCATT
*
45655926 TTTTTAATTTTAATTTTAATT-TTAATA
1 TTTTTAATTTTAA-TTTAATTGTT-ACA
**
45655953 TTTTTGTTTTTAATTTAATTGTTACA
1 TTTTTAATTTTAATTTAATTGTTACA
45655979 -TTTTAATTTT
1 TTTTTAATTTT
45655989 TCTTTTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
25 8 0.27
26 9 0.30
27 13 0.43
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTTTAATTTTAATTTAATTGTTACA
Found at i:45655989 original size:26 final size:27
Alignment explanation
Indices: 45655927--45655989 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
45655917 TTTAGCATTT
*
45655927 TTTTAA-TTTTAATTTTAATTTTAATA
1 TTTTAATTTTTAATTTTAATTTTAACA
**
45655953 TTTTTGTTTTTAA-TTTAATTGTT-ACA
1 TTTTAATTTTTAATTTTAATT-TTAACA
45655979 TTTTAATTTTT
1 TTTTAATTTTT
45655990 CTTTTTTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (27 bp):
TTTTAATTTTTAATTTTAATTTTAACA
Found at i:45655996 original size:33 final size:32
Alignment explanation
Indices: 45655924--45655997 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 32
45655914 TAATTTAGCA
45655924 TTTTTTTAATTTTAATTTTAATTTTAATATTT
1 TTTTTTTAATTTTAATTTTAATTTTAATATTT
*
45655956 TTGTTTTTAA-TTTAATTGTTACATTTTAATTTTT
1 TT-TTTTTAATTTTAATT-TTA-ATTTTAATATTT
45655990 CTTTTTTT
1 -TTTTTTT
45655998 TGATTCTTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 9 0.24
33 10 0.27
34 16 0.43
35 2 0.05
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (32 bp):
TTTTTTTAATTTTAATTTTAATTTTAATATTT
Found at i:45658831 original size:14 final size:13
Alignment explanation
Indices: 45658808--45658840 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
45658798 TTTATTTCTT
45658808 AAAAAAATAAATA
1 AAAAAAATAAATA
45658821 AAAATAAATAAATA
1 AAAA-AAATAAATA
45658835 AAAAAA
1 AAAAAA
45658841 TGGTCAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAATA
Found at i:45658833 original size:18 final size:17
Alignment explanation
Indices: 45658807--45658840 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45658797 TTTTATTTCT
45658807 TAAAAAAATAAATAAAAA
1 TAAAAAAATAAA-AAAAA
*
45658825 TAAATAAATAAAAAAA
1 TAAAAAAATAAAAAAA
45658841 TGGTCAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
TAAAAAAATAAAAAAAA
Found at i:45663444 original size:5 final size:5
Alignment explanation
Indices: 45663434--45663488 Score: 62
Period size: 5 Copynumber: 11.2 Consensus size: 5
45663424 AATATATAAC
*
45663434 AATAT AATAT AATAT AAT-T AATAT AATAC AATAT ATTATAT AATA- AA-AT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A--ATAT AATAT AATAT
45663483 AATAT A
1 AATAT A
45663489 CTAATGTTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 1 0.02
4 8 0.19
5 29 0.67
7 5 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:45663464 original size:29 final size:30
Alignment explanation
Indices: 45663422--45663488 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
45663412 TTTAGTTTAT
45663422 TTAATAT-ATAACAATATA-ATATAATATAA
1 TTAATATAATAACAATATATATATAATA-AA
45663451 TTAATATAAT-ACAATATATTATATAATAAA
1 TTAATATAATAACAATATA-TATATAATAAA
*
45663481 ATAATATA
1 TTAATATA
45663489 CTAATGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
29 15 0.44
30 11 0.32
31 8 0.24
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (30 bp):
TTAATATAATAACAATATATATATAATAAA
Found at i:45663476 original size:17 final size:19
Alignment explanation
Indices: 45663434--45663483 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
45663424 AATATATAAC
*
45663434 AATATAATATAATATAATT
1 AATATAATAAAATATAATT
*
45663453 AATATAATACAATAT-ATT
1 AATATAATAAAATATAATT
45663471 -ATATAATAAAATA
1 AATATAATAAAATA
45663484 ATATACTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 12 0.41
18 3 0.10
19 14 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AATATAATAAAATATAATT
Found at i:45669230 original size:7 final size:7
Alignment explanation
Indices: 45669218--45669246 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
45669208 AAACTCATTC
45669218 CCCAGTT
1 CCCAGTT
45669225 CCCAGTT
1 CCCAGTT
45669232 CCCAGTT
1 CCCAGTT
45669239 CCCAGTT
1 CCCAGTT
45669246 C
1 C
45669247 TCACTCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.45, G:0.14, T:0.28
Consensus pattern (7 bp):
CCCAGTT
Found at i:45674490 original size:29 final size:29
Alignment explanation
Indices: 45674441--45674516 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
45674431 ACGATAATGC
* * *
45674441 AAGTGACTAAAACGTAGTATTTCGAACGT
1 AAGTGACTAAAACGTAATATTTCAAACAT
* * *
45674470 AAGTAACTAAAACTTAATATTTTAAACAT
1 AAGTGACTAAAACGTAATATTTCAAACAT
*
45674499 AAGTGACTAAAATGTAAT
1 AAGTGACTAAAACGTAAT
45674517 CTGAGGCAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (29 bp):
AAGTGACTAAAACGTAATATTTCAAACAT
Found at i:45675441 original size:6 final size:7
Alignment explanation
Indices: 45675426--45675450 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
45675416 ATCGAAATTT
45675426 AAAATAA
1 AAAATAA
45675433 AAAATAA
1 AAAATAA
45675440 AAAATAA
1 AAAATAA
45675447 AAAA
1 AAAA
45675451 GGAAATTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:45688930 original size:27 final size:27
Alignment explanation
Indices: 45688892--45688944 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
45688882 AAAAAATGAC
45688892 TAAAAAAGAGTTGTACTAATTTTATTT
1 TAAAAAAGAGTTGTACTAATTTTATTT
*
45688919 TAAAACAA-AGTTGTGCTAATTTTATT
1 TAAAA-AAGAGTTGTACTAATTTTATT
45688945 AAGGTAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (27 bp):
TAAAAAAGAGTTGTACTAATTTTATTT
Found at i:45691033 original size:31 final size:31
Alignment explanation
Indices: 45690998--45691068 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
45690988 TGTCATCCCG
* *
45690998 GATTGCCCGACAACAATGACTAACCACCCTA
1 GATTGCCCGAAAACAATGACTAACCACCCCA
* ** * *
45691029 GATTGCTCGAAAATGATGGCTTACCACCCCA
1 GATTGCCCGAAAACAATGACTAACCACCCCA
45691060 GATTGCCCG
1 GATTGCCCG
45691069 GTAATGATGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (31 bp):
GATTGCCCGAAAACAATGACTAACCACCCCA
Found at i:45691075 original size:31 final size:31
Alignment explanation
Indices: 45691020--45691078 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
45691010 ACAATGACTA
* *
45691020 ACCACCCTAGATTGCTCGAAAATGATGGCTT
1 ACCACCCCAGATTGCCCGAAAATGATGGCTT
**
45691051 ACCACCCCAGATTGCCCGGTAATGATGG
1 ACCACCCCAGATTGCCCGAAAATGATGG
45691079 TTTATCGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (31 bp):
ACCACCCCAGATTGCCCGAAAATGATGGCTT
Found at i:45691199 original size:76 final size:76
Alignment explanation
Indices: 45691060--45691201 Score: 169
Period size: 76 Copynumber: 1.9 Consensus size: 76
45691050 TACCACCCCA
** * * * ** *
45691060 GATTGCCCGGTAATGATGGTTTATCGATTTAGATCTGTCCTCCCGGGTTGCTCGGTGACGATGAC
1 GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGCTCGATGACGATGAC
45691125 CTGTCATCCCG
66 CTGTCATCCCG
* * *
45691136 GATTGCCCGACAATGAGGGTTTATTGATTCAAATCTGTCAGCTCGGGTTG-TCCGATGATGATGA
1 GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGCT-CGATGACGATGA
45691200 CC
65 CC
45691202 CGCCATCTTG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
75 1 0.02
76 53 0.98
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (76 bp):
GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGCTCGATGACGATGAC
CTGTCATCCCG
Found at i:45692156 original size:22 final size:22
Alignment explanation
Indices: 45692111--45692232 Score: 122
Period size: 22 Copynumber: 5.5 Consensus size: 22
45692101 ATGTCATAGC
*
45692111 TCACATAGGTCAT-AGTTTGCATA
1 TCACAT-GG-CATAAGTTCGCATA
45692134 TCACATGGCATATA-TTCGCATA
1 TCACATGGCATA-AGTTCGCATA
* * *
45692156 TCACTTTAGCATAAGTTCGTATA
1 TCAC-ATGGCATAAGTTCGCATA
* * *
45692179 TCACATGACATAGGTTCACATA
1 TCACATGGCATAAGTTCGCATA
45692201 TCACATGGCATAAGTTCGCATA
1 TCACATGGCATAAGTTCGCATA
*
45692223 TCACGTGGCA
1 TCACATGGCA
45692233 ATCACACAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.04
22 54 0.67
23 24 0.30
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (22 bp):
TCACATGGCATAAGTTCGCATA
Found at i:45692181 original size:45 final size:44
Alignment explanation
Indices: 45692111--45692232 Score: 129
Period size: 45 Copynumber: 2.7 Consensus size: 44
45692101 ATGTCATAGC
* * *
45692111 TCACATAGGTCAT-AGTTTGCATATCACATGGCATATATTCGCATA
1 TCACATA-G-CATAAGTTCGCATATCACATGGCATAGATTCACATA
* * * *
45692156 TCACTTTAGCATAAGTTCGTATATCACATGACATAGGTTCACATA
1 TCAC-ATAGCATAAGTTCGCATATCACATGGCATAGATTCACATA
* *
45692201 TCACATGGCATAAGTTCGCATATCACGTGGCA
1 TCACATAGCATAAGTTCGCATATCACATGGCA
45692233 ATCACACAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
44 26 0.41
45 35 0.56
46 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (44 bp):
TCACATAGCATAAGTTCGCATATCACATGGCATAGATTCACATA
Found at i:45692535 original size:24 final size:23
Alignment explanation
Indices: 45692499--45692598 Score: 98
Period size: 24 Copynumber: 4.2 Consensus size: 23
45692489 ACATATAAGA
45692499 TGATA-GGGTTCACATGTCACTGG
1 TGATAGGGGTTCACATGT-ACTGG
45692522 TGATAGGGGTTCACACATG-ACTGG
1 TGATAGGGGTT--CACATGTACTGG
* *
45692546 TGATAAGGGTTTGCACATGTTC-GG
1 TGAT-AGGGGTT-CACATGTACTGG
*
45692570 TGATAGGGGTTCACATGTATCAGG
1 TGATAGGGGTTCACATGTA-CTGG
45692594 TGATA
1 TGATA
45692599 AGTGGTTATA
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
22 7 0.11
23 12 0.18
24 33 0.51
25 7 0.11
26 6 0.09
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (23 bp):
TGATAGGGGTTCACATGTACTGG
Found at i:45692631 original size:22 final size:23
Alignment explanation
Indices: 45692602--45692726 Score: 80
Period size: 22 Copynumber: 5.6 Consensus size: 23
45692592 GGTGATAAGT
*
45692602 GGTT-ATATACTAACAAGGCA-C
1 GGTTCATATATTAACAAGGCAGC
* * *
45692623 GGTTCATATATTAGCAAGGTAGG
1 GGTTCATATATTAACAAGGCAGC
* * * *
45692646 GGTTCACATATTAATTAA-GTAGG
1 GGTTCATATATTAA-CAAGGCAGC
*
45692669 GGTT-ATATACTAACAAGGCA-C
1 GGTTCATATATTAACAAGGCAGC
* * *
45692690 GGTTCATATATTAGCAAGGTAGG
1 GGTTCATATATTAACAAGGCAGC
**
45692713 GGTTCGCATATTAA
1 GGTTCATATATTAA
45692727 TTAAGTAGGG
Statistics
Matches: 79, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
21 10 0.13
22 35 0.44
23 32 0.41
24 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (23 bp):
GGTTCATATATTAACAAGGCAGC
Found at i:45692656 original size:23 final size:23
Alignment explanation
Indices: 45692623--45692742 Score: 86
Period size: 23 Copynumber: 5.3 Consensus size: 23
45692613 AACAAGGCAC
*
45692623 GGTTCATATATTAGCAAGGTAGG
1 GGTTCACATATTAGCAAGGTAGG
**
45692646 GGTTCACATATTAATTAA-GTAGG
1 GGTTCACATATT-AGCAAGGTAGG
* * * * *
45692669 GGTT-ATATACTAACAAGGCA-C
1 GGTTCACATATTAGCAAGGTAGG
*
45692690 GGTTCATATATTAGCAAGGTAGG
1 GGTTCACATATTAGCAAGGTAGG
* **
45692713 GGTTCGCATATTAATTAA-GTAGG
1 GGTTCACATATT-AGCAAGGTAGG
45692736 GGTTCAC
1 GGTTCAC
45692743 CTGTATTACC
Statistics
Matches: 74, Mismatches: 18, Indels: 10
0.73 0.18 0.10
Matches are distributed among these distances:
21 7 0.09
22 20 0.27
23 41 0.55
24 6 0.08
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (23 bp):
GGTTCACATATTAGCAAGGTAGG
Found at i:45692683 original size:67 final size:67
Alignment explanation
Indices: 45692602--45692739 Score: 267
Period size: 67 Copynumber: 2.1 Consensus size: 67
45692592 GGTGATAAGT
45692602 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
1 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
45692667 GG
66 GG
*
45692669 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCGCATATTAATTAAGTA
1 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
45692734 GG
66 GG
45692736 GGTT
1 GGTT
45692740 CACCTGTATT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (67 bp):
GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
GG
Found at i:45695760 original size:44 final size:44
Alignment explanation
Indices: 45695709--45695809 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
45695699 ATTTTACAGC
* * **
45695709 CAATGGCTGTGGACACAAAACAAAATGTCGCAGATGGAATCTG-
1 CAATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
** * *
45695752 CATATGGCTGTGGGTACATAACAAAATATTACAGATAAAATCTGT
1 CA-ATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
45695797 CAATGGCTGTGGA
1 CAATGGCTGTGGA
45695810 AGCACTACAT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.04
44 43 0.91
45 2 0.04
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (44 bp):
CAATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
Found at i:45698776 original size:23 final size:23
Alignment explanation
Indices: 45698750--45698800 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
45698740 AAAAATATCT
45698750 TTAAAATAAT-ATTTATTATTTTG
1 TTAAAATAATGATTT-TTATTTTG
*
45698773 TTAAAATAATGATTTTTGTTTTG
1 TTAAAATAATGATTTTTATTTTG
45698796 TTAAA
1 TTAAA
45698801 GAATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (23 bp):
TTAAAATAATGATTTTTATTTTG
Found at i:45704151 original size:12 final size:13
Alignment explanation
Indices: 45704132--45704169 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
45704122 AAGATTGTTT
45704132 CAAAAAAAGTAAA
1 CAAAAAAAGTAAA
45704145 CAAAAAAAG-AAA
1 CAAAAAAAGTAAA
* *
45704157 CATAAAAACTAAA
1 CAAAAAAAGTAAA
45704170 ATTAAACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.76, C:0.11, G:0.05, T:0.08
Consensus pattern (13 bp):
CAAAAAAAGTAAA
Found at i:45704194 original size:19 final size:19
Alignment explanation
Indices: 45704148--45704194 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
45704138 AAGTAAACAA
*
45704148 AAAAAGAAACATAAAAACT
1 AAAAATAAACATAAAAACT
* *
45704167 AAAATTAAACTTAAAAA-T
1 AAAAATAAACATAAAAACT
45704185 AATAAATAAA
1 AA-AAATAAA
45704195 AAGAAAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAAATAAACATAAAAACT
Found at i:45705864 original size:21 final size:21
Alignment explanation
Indices: 45705811--45705867 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
45705801 TAGCTCTCAC
*
45705811 GAGCTTCTGTTTAACTCATAT
1 GAGCTTCTGTTCAACTCATAT
* * *
45705832 GAG-TTTTCGTTCAGCTCCTAT
1 GAGCTTCT-GTTCAACTCATAT
45705853 GAGCTTCTGTTCAAC
1 GAGCTTCTGTTCAAC
45705868 CCTTTATGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 3 0.11
21 22 0.79
22 3 0.11
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (21 bp):
GAGCTTCTGTTCAACTCATAT
Found at i:45708896 original size:16 final size:17
Alignment explanation
Indices: 45708872--45708903 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
45708862 TTAAATTAAC
45708872 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
45708889 TAAA-TAATTTCTCAA
1 TAAATTAATTTCTCAA
45708904 CTGAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:45708897 original size:20 final size:20
Alignment explanation
Indices: 45708854--45708895 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
45708844 TTATTTAACC
*
45708854 AATTAATTTTAAATTAACTA
1 AATTAATTTTAAATTAAATA
*
45708874 AATTAATTTCTCAATTAAATA
1 AATTAATTT-TAAATTAAATA
45708895 A
1 A
45708896 TTTCTCAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (20 bp):
AATTAATTTTAAATTAAATA
Found at i:45716065 original size:12 final size:12
Alignment explanation
Indices: 45716048--45716073 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45716038 TTTCATCACA
45716048 TCCTGTAAAATT
1 TCCTGTAAAATT
45716060 TCCTGTAAAATT
1 TCCTGTAAAATT
45716072 TC
1 TC
45716074 GTTAGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (12 bp):
TCCTGTAAAATT
Found at i:45716930 original size:27 final size:27
Alignment explanation
Indices: 45716892--45716960 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
45716882 GAGGAGGGTA
*
45716892 TCCCATGGGCGGCACCAAAGGTGCCTT
1 TCCCATGGGCGGCACCAAAGGTGCCAT
* * * *
45716919 TCCCATAGGCGGCCCCGATGGTGCCAT
1 TCCCATGGGCGGCACCAAAGGTGCCAT
45716946 TCCCATGGGCGGCAC
1 TCCCATGGGCGGCAC
45716961 TGCCCATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.16, C:0.36, G:0.30, T:0.17
Consensus pattern (27 bp):
TCCCATGGGCGGCACCAAAGGTGCCAT
Found at i:45717028 original size:10 final size:10
Alignment explanation
Indices: 45717013--45717125 Score: 66
Period size: 10 Copynumber: 11.7 Consensus size: 10
45717003 GAAGGAGAGG
45717013 GAAAGAAGAA
1 GAAAGAAGAA
45717023 GAAAG-A-AA
1 GAAAGAAGAA
45717031 GAAAGAA-AA
1 GAAAGAAGAA
*
45717040 GGAAA-AGAGAG
1 -GAAAGA-AGAA
45717051 GAAAG-A-AA
1 GAAAGAAGAA
45717059 GAAA-AAGAA
1 GAAAGAAGAA
*
45717068 GGGAAGAA-AA
1 -GAAAGAAGAA
*
45717078 GGAAAGGAGAA
1 -GAAAGAAGAA
45717089 G-AAGAAGAA
1 GAAAGAAGAA
*
45717098 GAAAAAAGAAA
1 GAAAGAAG-AA
45717109 GAAA-AAGAA
1 GAAAGAAGAA
45717118 GGAAAGAA
1 -GAAAGAA
45717126 AAGGAAATGA
Statistics
Matches: 82, Mismatches: 7, Indels: 27
0.71 0.06 0.23
Matches are distributed among these distances:
8 13 0.16
9 18 0.22
10 38 0.46
11 13 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:45717030 original size:14 final size:14
Alignment explanation
Indices: 45717013--45717126 Score: 73
Period size: 14 Copynumber: 8.3 Consensus size: 14
45717003 GAAGGAGAGG
45717013 GAAAGAAGAAGAAA
1 GAAAGAAGAAGAAA
*
45717027 GAAAGAAAGAA-AAG
1 GAAAG-AAGAAGAAA
*
45717041 GAAA-AGAGAGGAAA
1 GAAAGA-AGAAGAAA
* *
45717055 GAAAGAAAAAGAAG
1 GAAAGAAGAAGAAA
*
45717069 GGAAGAA-AAGGAAA
1 GAAAGAAGAA-GAAA
45717083 GGAGAAGAAGAAG-AA
1 -GA-AAGAAGAAGAAA
45717098 G-AA-AA-AAGAAA
1 GAAAGAAGAAGAAA
45717109 GAAA-AAGAAGGAAA
1 GAAAGAAGAA-GAAA
45717123 GAAA
1 GAAA
45717127 AGGAAATGAG
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
10 3 0.04
11 5 0.06
12 7 0.09
13 7 0.09
14 40 0.51
15 9 0.11
16 6 0.08
17 2 0.03
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
GAAAGAAGAAGAAA
Found at i:45717055 original size:38 final size:38
Alignment explanation
Indices: 45717007--45717113 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 38
45716997 GGAAGAGAAG
45717007 GAGAGGGAAAGAAGAAGAAAGAAAGAAAGAAAAGGAAAA
1 GAGA-GGAAAGAAGAAGAAAGAAAGAAAGAAAAGGAAAA
* * *
45717046 GAGAGGAAAGAAAGAA-AAAGAAGGGAAGAAAAGGAAAG
1 GAGAGGAAAG-AAGAAGAAAGAAAGAAAGAAAAGGAAAA
*
45717084 GAGAAG-AAGAAGAAGAAA-AAAGAAAGAAAA
1 GAGAGGAAAGAAGAAGAAAGAAAGAAAGAAAA
45717114 AGAAGGAAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
36 15 0.25
37 6 0.10
38 30 0.50
39 9 0.15
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (38 bp):
GAGAGGAAAGAAGAAGAAAGAAAGAAAGAAAAGGAAAA
Found at i:45717059 original size:19 final size:19
Alignment explanation
Indices: 45717012--45717132 Score: 84
Period size: 19 Copynumber: 6.8 Consensus size: 19
45717002 AGAAGGAGAG
45717012 GGAAAGAAGAA-G-AAAGAA
1 GGAAAGAA-AAGGAAAAGAA
*
45717030 AGAAAGAAAAGGAAAAGAGA
1 GGAAAGAAAAGGAAAAGA-A
*
45717050 GGAAAG-AAAGAAAAAGAA
1 GGAAAGAAAAGGAAAAGAA
* *
45717068 GGGAAGAAAAGG-AAAGGA
1 GGAAAGAAAAGGAAAAGAA
45717086 -G-AAG--AA-GAAGAAGAA
1 GGAAAGAAAAGGAA-AAGAA
* *
45717101 -AAAAG-AAAGAAAAAGAA
1 GGAAAGAAAAGGAAAAGAA
45717118 GGAAAGAAAAGGAAA
1 GGAAAGAAAAGGAAA
45717133 TGAGAAGAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 21
0.72 0.10 0.19
Matches are distributed among these distances:
13 1 0.01
14 3 0.04
15 4 0.05
16 6 0.07
17 10 0.12
18 25 0.31
19 26 0.32
20 6 0.07
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
GGAAAGAAAAGGAAAAGAA
Found at i:45717091 original size:72 final size:68
Alignment explanation
Indices: 45716996--45717126 Score: 183
Period size: 72 Copynumber: 1.9 Consensus size: 68
45716986 GGTTGGTGGG
* * *
45716996 GGGAAGAGAAGGAGAGGGAAAGAAGAAGAAAGAAAGAAAGAAAAGGAAAAGAGAGGAAAGAAAGA
1 GGGAAGAAAAGGAAAGGGAAAGAAGAAG-AAGAAA-AAAG-AAAGAAAAAGA-AGGAAAGAAAGA
45717061 AAAAGAA
62 AAAAGAA
45717068 GGGAAGAAAAGGAAA-GGAGAAGAAGAAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAA
1 GGGAAGAAAAGGAAAGGGA-AAGAAGAAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAA
45717127 AGGAAATGAG
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
68 10 0.18
69 10 0.18
70 4 0.07
71 9 0.16
72 22 0.40
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (68 bp):
GGGAAGAAAAGGAAAGGGAAAGAAGAAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAGAAAAA
GAA
Found at i:45717106 original size:50 final size:46
Alignment explanation
Indices: 45717052--45717164 Score: 163
Period size: 50 Copynumber: 2.4 Consensus size: 46
45717042 AAAAGAGAGG
*
45717052 AAAGAAAGAAAAAGAAGGGAAGAAAAGGAAAGGAGAAGAAGAAGAAGAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG-AG-A-AA-AAA
*
45717102 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAATGAGAAGAGAAAAAA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
*
45717148 AAAGAAAGAACAAGAAG
1 AAAGAAAGAAAAAGAAG
45717165 AGGGGAGGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
46 19 0.32
47 2 0.03
48 1 0.02
49 2 0.03
50 36 0.60
ACGTcount: A:0.70, C:0.01, G:0.28, T:0.01
Consensus pattern (46 bp):
AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
Found at i:45717107 original size:46 final size:46
Alignment explanation
Indices: 45717013--45717164 Score: 150
Period size: 50 Copynumber: 3.3 Consensus size: 46
45717003 GAAGGAGAGG
* * * * *
45717013 GAAAGAAGAAGAAAGAAAG-AAAGAAAAGGA-AA-AG-AGAGGAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAGAAA
* *
45717055 GAAAGAAAAAGAAGGGAAGAAAAGGAAAGGAGAAGAAGAAGAAGAAAAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG-AG-A-AA-AAGAAA
* *
45717105 GAAAGAAAAAGAAGGAAAGAAAAGGAAATGAGAAGAGAAAAAAAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAGAAA
*
45717151 GAAAGAACAAGAAG
1 GAAAGAAAAAGAAG
45717165 AGGGGAGGAA
Statistics
Matches: 92, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
42 16 0.17
43 10 0.11
44 2 0.02
46 21 0.23
47 2 0.02
48 1 0.01
49 3 0.03
50 37 0.40
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.01
Consensus pattern (46 bp):
GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAGAAA
Found at i:45717129 original size:10 final size:10
Alignment explanation
Indices: 45717012--45717157 Score: 62
Period size: 10 Copynumber: 14.8 Consensus size: 10
45717002 AGAAGGAGAG
45717012 GGAAAGAAGAA
1 GGAAAGAA-AA
45717023 -GAAAG-AAA
1 GGAAAGAAAA
45717031 -GAAAGAAAA
1 GGAAAGAAAA
*
45717040 GGAAA-AGAGA
1 GGAAAGA-AAA
45717050 GGAAAG-AAA
1 GGAAAGAAAA
45717059 -GAAA-AAGAA
1 GGAAAGAA-AA
*
45717068 GGGAAGAAAA
1 GGAAAGAAAA
*
45717078 GGAAAGGAGAA
1 GGAAA-GAAAA
45717089 -G-AAGAAGAA
1 GGAAAGAA-AA
*
45717098 -GAAAAAAGAA
1 GGAAAGAA-AA
*
45717108 AGAAA-AAGAA
1 GGAAAGAA-AA
45717118 GGAAAGAAAA
1 GGAAAGAAAA
*
45717128 GGAAATGAGAA
1 GGAAA-GAAAA
*
45717139 GAGAAAAAAAA
1 G-GAAAGAAAA
*
45717150 AGAAAGAA
1 GGAAAGAA
45717158 CAAGAAGAGG
Statistics
Matches: 107, Mismatches: 13, Indels: 31
0.71 0.09 0.21
Matches are distributed among these distances:
8 14 0.13
9 14 0.13
10 55 0.51
11 20 0.19
12 4 0.04
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (10 bp):
GGAAAGAAAA
Found at i:45717138 original size:21 final size:22
Alignment explanation
Indices: 45717091--45717154 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
45717081 AAGGAGAAGA
*
45717091 AGAAGAAGAAAAAAGAAAGAAA-A
1 AGAAG-AGAAAAAA-AAAGAAATG
* *
45717114 AGAAG-GAAAGAAAAGGAAATG
1 AGAAGAGAAAAAAAAAGAAATG
45717135 AGAAGAGAAAAAAAAAGAAA
1 AGAAGAGAAAAAAAAAGAAA
45717155 GAACAAGAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 6 0.18
21 11 0.32
22 12 0.35
23 5 0.15
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (22 bp):
AGAAGAGAAAAAAAAAGAAATG
Found at i:45717586 original size:21 final size:21
Alignment explanation
Indices: 45717562--45717605 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
45717552 ATAAAGTAAA
45717562 ATTATAAAATTAGAAATTATG
1 ATTATAAAATTAGAAATTATG
45717583 ATTATAAAATTAGAAATTATG
1 ATTATAAAATTAGAAATTATG
45717604 AT
1 AT
45717606 ATTTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (21 bp):
ATTATAAAATTAGAAATTATG
Found at i:45717958 original size:322 final size:322
Alignment explanation
Indices: 45717583--45718312 Score: 1218
Period size: 322 Copynumber: 2.3 Consensus size: 322
45717573 AGAAATTATG
45717583 ATTATAAAATTAGAAATTATGATA-TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
* * *
45717647 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTCAAAAGTAATTAATACAG
66 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
* *
45717712 ATAATTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTAT
131 ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATAT-TTTTTAT
* *
45717777 TGAAAGTAATAAAATTCGGGAGAATAATACGAGCAAAGA-GCAGGAATAA-GG-TTTTTTTACAT
195 TGAAAGTAATAAAATTCGGGA-AATAATACAAGCAAA-ACGCAGGAATAAGGGTTTTTTTTACAC
45717839 TAAATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTGAAATAAAGTAAA
258 TAAATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTGAAATAAAGTAAA
*
45717904 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGAAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
*
45717969 ATGGCCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
66 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
*
45718034 ATATTTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATT
131 ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATT
* *
45718099 GAGAGTAATAAAATTTGGGAAATAATACAAGCAAAACGCAGGAATAAGGGTTTTTTTTACACTAA
196 GAAAGTAATAAAATTCGGGAAATAATACAAGCAAAACGCAGGAATAAGGGTTTTTTTTACACTAA
* * *
45718164 ATTAATTTAAAAAATACACTAAATTAATAAATTTCAAACATAATGCACTGAAATAATGTAAA
261 ATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTGAAATAAAGTAAA
* * *
45718226 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATACGGAG-AAAAAATACAAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
* *
45718290 ATGACTGAAGTAAGAGTTTTTTA
66 ATGACCGAAGTAAGAGTGTTTTA
45718313 TTAACTTTTT
Statistics
Matches: 383, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
319 1 0.00
320 24 0.06
321 86 0.22
322 272 0.71
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (322 bp):
ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATT
GAAAGTAATAAAATTCGGGAAATAATACAAGCAAAACGCAGGAATAAGGGTTTTTTTTACACTAA
ATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTGAAATAAAGTAAA
Found at i:45718311 original size:158 final size:157
Alignment explanation
Indices: 45717583--45718311 Score: 591
Period size: 158 Copynumber: 4.5 Consensus size: 157
45717573 AGAAATTATG
*
45717583 ATTATAAAATTAGAAATTATGATA-TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAG-AAAAAATACGAACAA
* * *
45717647 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTT-TTTTAAAAATTCAAAAGTAATTAATACA
65 ATGACCGAAGTAAGAGT-TTTT--TTTTACTAAATTATTTAAAAAATACAAAA-TAATTAATA-A
*
45717711 GATAATTCAAACAAAATGTACTGAAATAATATAAA
125 GAT--TTCAAACAAAATGCACTGAAATAATATAAA
* * * *
45717746 ATAATAAAA-TACGAAAATAAT-ATATTTTTATTGAAAGTAATAAAATTCGG-GAGAATAATACG
1 ATTATAAAATTA-G-AAATTATGATA-TTTT-TT-AAAGTAATAAAATGCGGAGA-AAAAATACG
* * ** * * **
45717808 AGCAAA-GAGCAGGAA-TAAG-GTTTTTTTACATTAAATTAATGTAAAAAATACACTA-AATTAA
60 AACAAATGA-C-CGAAGTAAGAGTTTTTTTTTACTAAATT-ATTTAAAAAATACAAAATAATTAA
* *
45717869 TAA-ATTTAAAACATAATGCACTGAAATAA-AGTAAA
122 TAAGATTTCAAACAAAATGCACTGAAATAATA-TAAA
* *
45717904 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGAAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAG-AAAAAATACGAACAA
* * * * *
45717969 ATGGCCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
65 ATGACCGAAGTAAGAGT-TTTT--TTTTACTAAATTATTTAAAAAATACAAAATAATTAAT---A
* * * *
45718034 ATATTTCAAACAAAATGTAATAAAATAATATAAA
124 AGATTTCAAACAAAATGCACTGAAATAATATAAA
* * ** *
45718068 ATAATAAAA-TACGAAA--ATAATATTTTTTATTGAGAGTAATAAAATTTGG-GAAATAATAC-A
1 ATTATAAAATTA-GAAATTATGATATTTTTTA---A-AGTAATAAAATGCGGAGAAAAAATACGA
* * **
45718128 AGCAAA--ACGCAGGAA-TAAGGGTTTTTTTTACACTAAATTAATTTAAAAAATACACTA-AATT
61 A-CAAATGAC-C--GAAGTAAGAGTTTTTTTT-TACTAAATT-ATTTAAAAAATACAAAATAATT
* *
45718189 AATAA-ATTTCAAACATAATGCACTGAAATAATGTAAA
120 AATAAGATTTCAAACAAAATGCACTGAAATAATATAAA
* *
45718226 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATACGGAGAAAAAATACAAACAAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAATACGAACAAA
*
45718291 TGACTGAAGTAAGAGTTTTTT
66 TGACCGAAGTAAGAGTTTTTT
45718312 ATTAACTTTT
Statistics
Matches: 448, Mismatches: 71, Indels: 100
0.72 0.11 0.16
Matches are distributed among these distances:
155 17 0.04
156 37 0.08
157 40 0.09
158 82 0.18
159 19 0.04
160 29 0.06
161 4 0.01
162 45 0.10
163 35 0.08
164 76 0.17
165 14 0.03
166 32 0.07
167 18 0.04
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (157 bp):
ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAATACGAACAAA
TGACCGAAGTAAGAGTTTTTTTTTACTAAATTATTTAAAAAATACAAAATAATTAATAAGATTTC
AAACAAAATGCACTGAAATAATATAAA
Found at i:45732070 original size:43 final size:41
Alignment explanation
Indices: 45731951--45732086 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 41
45731941 CCACTAACCC
* **
45731951 TAATAACTAACACAATAACAATAATAATAGTTTTATACCCAAAA
1 TAAT-ACTAAC-C-ATAACAATAATAATAGTTTTTTACTAAAAA
**
45731995 TAATACTAA-C-TAACAATAATAATTAGGGTTTTACTAAAAA
1 TAATACTAACCATAACAATAATAA-TAGTTTTTTACTAAAAA
* * *
45732035 TAATAACTAACCATAATAATAATACTAGTTTTTTTACTAACAA
1 TAAT-ACTAACCATAACAATAATAATAG-TTTTTTACTAAAAA
45732078 TAATACTAA
1 TAATACTAA
45732087 GTAACATCTA
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
39 12 0.16
40 16 0.21
41 6 0.08
42 9 0.12
43 30 0.39
44 4 0.05
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (41 bp):
TAATACTAACCATAACAATAATAATAGTTTTTTACTAAAAA
Found at i:45732394 original size:27 final size:27
Alignment explanation
Indices: 45732362--45732509 Score: 147
Period size: 27 Copynumber: 5.5 Consensus size: 27
45732352 TGACACAAGT
45732362 GGTGCCGCCTATGGGAAAGGTACCTTC
1 GGTGCCGCCTATGGGAAAGGTACCTTC
*
45732389 GTTGCCGCCTATGGGAAAGGTACCTTC
1 GGTGCCGCCTATGGGAAAGGTACCTTC
*** *
45732416 GGTGCCGCCTATGGGAAATACACCTTT
1 GGTGCCGCCTATGGGAAAGGTACCTTC
** * *
45732443 GGTGCCGCCCCT-GGAAATGGCACCTTT
1 GGTGCCGCCTATGGGAAA-GGTACCTTC
* * *
45732470 GGTGCCGCCCAT-GGAAATGGCACCATC
1 GGTGCCGCCTATGGGAAA-GGTACCTTC
*
45732497 GGTGTCGCCTATG
1 GGTGCCGCCTATG
45732510 AGATACCCTC
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
26 5 0.05
27 99 0.95
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (27 bp):
GGTGCCGCCTATGGGAAAGGTACCTTC
Found at i:45737632 original size:23 final size:23
Alignment explanation
Indices: 45737606--45737749 Score: 173
Period size: 23 Copynumber: 6.3 Consensus size: 23
45737596 ATAAGTGTCA
45737606 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
** *
45737629 CACTGATACATAGCCG-TGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
45737651 CACTGAAATTTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45737674 CACTGATATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* **
45737697 CACTGAAATGTAGTTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45737720 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45737743 CACTGAT
1 CACTGAT
45737750 CAATAAAACT
Statistics
Matches: 100, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
22 17 0.17
23 83 0.83
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45737717 original size:46 final size:46
Alignment explanation
Indices: 45737606--45737748 Score: 207
Period size: 46 Copynumber: 3.1 Consensus size: 46
45737596 ATAAGTGTCA
* **
45737606 CACTGATATGTAGCCGAAGCTACCACTGATACATAGCCGT-GCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
* * *
45737651 CACTGAAATTTAGCCAAAGCTACCACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
**
45737697 CACTGAAATGTAGTTGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
45737743 CACTGA
1 CACTGA
45737749 TCAATAAAAC
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 34 0.40
46 52 0.60
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:45744253 original size:18 final size:17
Alignment explanation
Indices: 45744232--45744291 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
45744222 GGGTCAAGTG
45744232 TGAATTTAGAAGAATTTT
1 TGAATTTAG-AGAATTTT
*
45744250 TGAA-TTAGTGAATTTT
1 TGAATTTAGAGAATTTT
*
45744266 GTG-ATTTAGTGAATTTT
1 -TGAATTTAGAGAATTTT
45744283 TGCAATTTA
1 TG-AATTTA
45744292 AAAAGAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
16 10 0.27
17 18 0.49
18 9 0.24
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (17 bp):
TGAATTTAGAGAATTTT
Found at i:45744274 original size:17 final size:16
Alignment explanation
Indices: 45744243--45744289 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
45744233 GAATTTAGAA
45744243 GAATTTTTGAATTAGT
1 GAATTTTTGAATTAGT
*
45744259 GAATTTTGTGATTTAGT
1 GAATTTT-TGAATTAGT
45744276 GAATTTTTGCAATT
1 GAATTTTTG-AATT
45744290 TAAAAAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (16 bp):
GAATTTTTGAATTAGT
Found at i:45745584 original size:46 final size:46
Alignment explanation
Indices: 45745517--45745701 Score: 316
Period size: 46 Copynumber: 4.0 Consensus size: 46
45745507 CATGGCAAAG
45745517 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
45745563 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
45745609 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
** * *
45745655 TGTGAAAAGTAGGTATGGTAATTCCGTGAAGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
45745701 T
1 T
45745702 ATAGCAATGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:45749003 original size:40 final size:40
Alignment explanation
Indices: 45748958--45749038 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
45748948 ATAATTCTTT
45748958 TTCTTTTACCCTTTGAACTAAAACAATTTTTAATTTTTAA
1 TTCTTTTACCCTTTGAACTAAAACAATTTTTAATTTTTAA
*
45748998 TTCTTTTACCCTTTGAACTAAAATAATTTTTAATTTTTAA
1 TTCTTTTACCCTTTGAACTAAAACAATTTTTAATTTTTAA
45749038 T
1 T
45749039 GAAACTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.14, G:0.02, T:0.52
Consensus pattern (40 bp):
TTCTTTTACCCTTTGAACTAAAACAATTTTTAATTTTTAA
Found at i:45749557 original size:22 final size:21
Alignment explanation
Indices: 45749532--45749572 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
45749522 GATGTATTTA
45749532 CATG-TTTAAATTTAGTTTTACT
1 CATGATTT-AATTTA-TTTTACT
45749554 CATGATTTAATTTATTTTA
1 CATGATTTAATTTATTTTA
45749573 ATATCGCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 10 0.56
23 3 0.17
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (21 bp):
CATGATTTAATTTATTTTACT
Found at i:45753582 original size:2 final size:2
Alignment explanation
Indices: 45753575--45753599 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45753565 TATAGATTAG
45753575 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
45753600 CCCTTCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:45754406 original size:36 final size:35
Alignment explanation
Indices: 45754359--45754426 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
45754349 TATTAACAAC
*
45754359 TTTTCTTCTCATATATATATAT-ATATATTTGTTCAA
1 TTTTCCTCTCAT-T-TATATATGATATATTTGTTCAA
*
45754395 TTTTCCTCTCATTTATATATGATATCTTTGTT
1 TTTTCCTCTCATTTATATATGATATATTTGTT
45754427 GCAGACGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 7 0.24
35 11 0.38
36 11 0.38
ACGTcount: A:0.25, C:0.13, G:0.04, T:0.57
Consensus pattern (35 bp):
TTTTCCTCTCATTTATATATGATATATTTGTTCAA
Found at i:45765438 original size:19 final size:20
Alignment explanation
Indices: 45765416--45765456 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
45765406 ATATTTGTAT
*
45765416 TTTATAATGA-TTAATTTTA
1 TTTATAATGATTTAAATTTA
*
45765435 TTTATAATTATTTAAATTTA
1 TTTATAATGATTTAAATTTA
45765455 TT
1 TT
45765457 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATAATGATTTAAATTTA
Found at i:45768330 original size:114 final size:114
Alignment explanation
Indices: 45768081--45768841 Score: 814
Period size: 114 Copynumber: 6.7 Consensus size: 114
45768071 TATTTGTAAG
* * * ** * ** * * * *
45768081 CGCCGCAAAAAATGTTAGCCAAAACGCATTGTTTGTTCCCGAGGTATATTAGACTTGGTGGCGTT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* * * * * * * *
45768146 TA-TGATAAACGCCGC-AATAGTATATTATTAGCGGCG-TTTTTTAGTAAA
66 TACGGAAAAACGCCGCTAA-AGCAGAGTATTAGAGGCGCTTTGTAAG-AAA
*
45768194 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* * *
45768259 TACGGAAAAACACCACTAAAGGAGAGTATTAGAGGCGCTTTGTAAGAAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * * *
45768308 CGCCGCAAATTATCTTAACCAAAATGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGAT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
** * * * * *
45768373 TGTGGGAAAACGCCGCTATAGCACAGTATTAGCA-GCGTTTTATACA-AAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAG-AGGCGCTTTGTA-AGAAA
* * *
45768422 CGCCACAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* * * *
45768487 TACGGAAAAACGCCGCTAAGGGAGAGTATTAAAAGCGCTTTGTAAGAAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * *
45768536 CGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGAT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
** * * * * * *
45768601 TGTGGGAAAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACA-AAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTA-AGAAA
* *
45768650 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* ** *
45768715 TACGGAAAAAGGCCGCTAAAGCAGAGTATTAGAGATGCTTTGTAAGAAT
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * *
45768764 TGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* *
45768829 TATGTAAAAACGC
66 TACGGAAAAACGC
45768842 ATGTAGGTTT
Statistics
Matches: 534, Mismatches: 105, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
113 59 0.11
114 464 0.87
115 11 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (114 bp):
CGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
Found at i:45768413 original size:228 final size:228
Alignment explanation
Indices: 45768152--45768826 Score: 1134
Period size: 228 Copynumber: 3.0 Consensus size: 228
45768142 CGTTTATGAT
* * * * * **
45768152 AAACGCCGCAATAGTATATTATTAGCGGCGTTTTTTAGTAAACGCCGCAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
* * *
45768217 ACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACACCACTAAAGGA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
*
45768282 GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAATGCAGCGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCT
45768347 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
196 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
* *
45768380 AAACGCCGCTATAGCACAGTATTAGCAGCGTTTTATACAAAACGCCACAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
*
45768445 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAGGGA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
* *
45768510 GAGTATTAAAAGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCT
45768575 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
196 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
45768608 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
* *
45768673 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAAGGCCGCTAAAGCA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
** ** *
45768738 GAGTATTAGAGATGCTTTGTAAGAATTGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCT
*
45768803 TGATGTATATTAGAATTAGTGGCG
196 TAATGTATATTAGAATTAGTGGCG
45768827 CTTATGTAAA
Statistics
Matches: 418, Mismatches: 29, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
228 418 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (228 bp):
AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
GAGTATTAGAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAGCGTTTGGTCT
TAATGTATATTAGAATTAGTGGCGATTGTGGGA
Found at i:45769177 original size:13 final size:14
Alignment explanation
Indices: 45769150--45769178 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45769140 GGGGTTGGGA
45769150 GTTTGGGGTTTTAG
1 GTTTGGGGTTTTAG
45769164 GTTTGGGG-TTTAG
1 GTTTGGGGTTTTAG
45769177 GT
1 GT
45769179 CGCTTTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.48
Consensus pattern (14 bp):
GTTTGGGGTTTTAG
Found at i:45769716 original size:12 final size:12
Alignment explanation
Indices: 45769699--45769725 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45769689 AATTTTATTA
45769699 AATAATATTAAT
1 AATAATATTAAT
45769711 AATAATATTAAT
1 AATAATATTAAT
45769723 AAT
1 AAT
45769726 GTCATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:45771323 original size:45 final size:44
Alignment explanation
Indices: 45771231--45771334 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 44
45771221 TTTGAAAACT
* *
45771231 ATGTTAAGCTATGTTAAACATTTTGAATGTTAAGCATAGTTTTGA
1 ATGTTAAGCTATGTTAAACATTTTGAATGTTAA-CACAGTTTCGA
* *
45771276 ATGTTTAGCTATGTTAATCTATGTTTTGAATGTTAA-ACA-TTTCGA
1 ATGTTAAGCTATGTTAAAC-A--TTTTGAATGTTAACACAGTTTCGA
45771321 ATGTTAAGCATATG
1 ATGTTAAGC-TATG
45771335 AGTTTCTGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
45 30 0.60
46 7 0.14
48 13 0.26
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (44 bp):
ATGTTAAGCTATGTTAAACATTTTGAATGTTAACACAGTTTCGA
Found at i:45772552 original size:41 final size:41
Alignment explanation
Indices: 45772358--45772667 Score: 261
Period size: 41 Copynumber: 7.5 Consensus size: 41
45772348 ACTTTTTTAG
* * *
45772358 ATTTTCATAGTACATAACTTACATAATATTGAACTTACTTA
1 ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
* * * * * *
45772399 A-CTT--TAATA-ATAATTTTCACAGTACAT-AACGTACATA
1 ATTTTCATAATACATAACTTACACAATA-TTGAACTTACATA
** ***
45772436 ATTTTCATAACCTACATAACTTATTCAATACACAACTTACATA
1 ATTTTCATAA--TACATAACTTACACAATATTGAACTTACATA
* * *
45772479 ATTGTTTATAATACACAACTTACATAATATTGAACTTACATA
1 ATT-TTCATAATACATAACTTACACAATATTGAACTTACATA
* * *
45772521 ATTTTCATAGTACATAACTTAAACGATATTGAACTTACATA
1 ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
* *** * *
45772562 ATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTA
1 ATTTTCATAA--TACATAACTTACACAATATTGAACTTACATA
* * *
45772605 AATTTCATAATACATAGCTTACATAATATTGGAACTTACATA
1 ATTTTCATAATACATAACTTACACAATATT-GAACTTACATA
45772647 ATTTTCATAATACATAACTTA
1 ATTTTCATAATACATAACTTA
45772668 TTTAATTTTC
Statistics
Matches: 206, Mismatches: 51, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
37 20 0.10
38 7 0.03
40 5 0.02
41 57 0.28
42 56 0.27
43 55 0.27
44 6 0.03
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.37
Consensus pattern (41 bp):
ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
Found at i:45772583 original size:126 final size:126
Alignment explanation
Indices: 45772430--45772667 Score: 388
Period size: 126 Copynumber: 1.9 Consensus size: 126
45772420 GTACATAACG
* * *
45772430 TACATAATTTTCATAACCTACATAACTTATTCAATACACAACTTACATAATTGTTTATAATACAC
1 TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAAT-TTCATAATACAC
*
45772495 AACTTACATAATATT-GAACTTACATAATTTTCATAGTACATAACTTAAACGATATTGAACT
65 AACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTAAACGATATTGAACT
* * *
45772556 TACATAATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATA
1 TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATACACA
*
45772621 GCTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTA
66 ACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTA
45772668 TTTAATTTTC
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
125 24 0.23
126 79 0.77
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.37
Consensus pattern (126 bp):
TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATACACA
ACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTAAACGATATTGAACT
Found at i:45772673 original size:25 final size:25
Alignment explanation
Indices: 45772637--45772775 Score: 138
Period size: 25 Copynumber: 5.5 Consensus size: 25
45772627 ATAATATTGG
45772637 AACTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAT
** * *
45772662 AACTTATTTAATTTTCATAATATAA
1 AACTTACATAATTTTCATAATACAT
* *
45772687 AACTTACATAA-CTT-ATACAGTACAC
1 AACTTACATAATTTTCATA-A-TACAT
*
45772712 AGCTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAT
* *
45772737 AACTAACATAATTCTTCATAATACAG
1 AACTTACATAATT-TTCATAATACAT
* *
45772763 CAGTTACATAATT
1 AACTTACATAATT
45772776 CTTAAAGAAT
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
23 3 0.03
24 3 0.03
25 58 0.64
26 24 0.26
27 3 0.03
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (25 bp):
AACTTACATAATTTTCATAATACAT
Found at i:45772697 original size:126 final size:126
Alignment explanation
Indices: 45772430--45772748 Score: 329
Period size: 126 Copynumber: 2.6 Consensus size: 126
45772420 GTACATAACG
* * * * *
45772430 TACATAATTTTCATAACCTACATAACTTATTCAATACACAACTTACATAATTGTTTATAATACAC
1 TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
* * * *
45772495 AACTTACATAATATTGAACTTACATAATTTTCATAGTACATAACTTAAACGATATTGAACT
66 AACTTACATAATATTGAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
* * * * *
45772556 TACATAATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTAAAT-TTCATAATACAT
1 TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
* *
45772620 AGCTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTT-----AT-TT-AATT
66 AACTTACATAATATT-GAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
* * * * *
45772675 TTCATAA-TATA-A-AACTTACATAACTTATACAGTACACAGCTTACAT-AATTTTCATAATACA
1 TACATAACT-TACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACA
* *
45772736 TAACTAACATAAT
65 CAACTTACATAAT
45772749 TCTTCATAAT
Statistics
Matches: 174, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
116 3 0.02
117 53 0.30
118 2 0.01
119 10 0.06
120 2 0.01
121 2 0.01
125 24 0.14
126 78 0.45
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (126 bp):
TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
AACTTACATAATATTGAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
Found at i:45772819 original size:9 final size:9
Alignment explanation
Indices: 45772802--45772927 Score: 162
Period size: 9 Copynumber: 14.0 Consensus size: 9
45772792 ATGGACCGGT
45772802 CTTACATAA
1 CTTACATAA
*
45772811 CTTAAATAA
1 CTTACATAA
45772820 CTTACATAA
1 CTTACATAA
45772829 CTTACATAA
1 CTTACATAA
*
45772838 CCTACATAA
1 CTTACATAA
* *
45772847 ATTAAATAA
1 CTTACATAA
45772856 CTTACATAA
1 CTTACATAA
45772865 CTTACATAA
1 CTTACATAA
*
45772874 CCTACATAA
1 CTTACATAA
* *
45772883 ATTAAATAA
1 CTTACATAA
*
45772892 CTTACATAG
1 CTTACATAA
45772901 CTTACATAA
1 CTTACATAA
* *
45772910 ATTAAATAA
1 CTTACATAA
45772919 CTTACATAA
1 CTTACATAA
45772928 TACATAAAAA
Statistics
Matches: 97, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 97 1.00
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.32
Consensus pattern (9 bp):
CTTACATAA
Found at i:45772852 original size:36 final size:36
Alignment explanation
Indices: 45772804--45772909 Score: 194
Period size: 36 Copynumber: 2.9 Consensus size: 36
45772794 GGACCGGTCT
*
45772804 TACATAACTTAAATAACTTACATAACTTACATAACC
1 TACATAAATTAAATAACTTACATAACTTACATAACC
45772840 TACATAAATTAAATAACTTACATAACTTACATAACC
1 TACATAAATTAAATAACTTACATAACTTACATAACC
*
45772876 TACATAAATTAAATAACTTACATAGCTTACATAA
1 TACATAAATTAAATAACTTACATAACTTACATAA
45772910 ATTAAATAAC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.49, C:0.19, G:0.01, T:0.31
Consensus pattern (36 bp):
TACATAAATTAAATAACTTACATAACTTACATAACC
Found at i:45778462 original size:21 final size:21
Alignment explanation
Indices: 45778436--45778504 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
45778426 CAACAACTTA
* *
45778436 AAGCAGATGCGGCAGCAAGGG
1 AAGCAGATGCGACAGCAAGAG
* *
45778457 AAGCAGATGCTACAGCGAGAG
1 AAGCAGATGCGACAGCAAGAG
* * *
45778478 AAGCAGAGGCCACAGCGAGAG
1 AAGCAGATGCGACAGCAAGAG
45778499 AAGCAG
1 AAGCAG
45778505 CAAGAGAAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.38, C:0.20, G:0.38, T:0.04
Consensus pattern (21 bp):
AAGCAGATGCGACAGCAAGAG
Found at i:45778510 original size:12 final size:12
Alignment explanation
Indices: 45778490--45778537 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
45778480 GCAGAGGCCA
45778490 CAGCGAGAGAAG
1 CAGCGAGAGAAG
*
45778502 CAGCAAGAGAAG
1 CAGCGAGAGAAG
*
45778514 CAGTGAGAGAAG
1 CAGCGAGAGAAG
*
45778526 CAGCGATAGAAG
1 CAGCGAGAGAAG
45778538 TAGAGGTTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.38, T:0.04
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:45779071 original size:42 final size:42
Alignment explanation
Indices: 45778950--45779260 Score: 360
Period size: 42 Copynumber: 7.4 Consensus size: 42
45778940 AACACTACTA
** * * *
45778950 TTAGCGGCGTTTTTGAACAAGCGCCGCTATAGAACATTA-CTT
1 TTAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGATC-T
** * *
45778992 TTAGCGGCGCTATCATCCA-AAGCGCCGCTAAAGAACATGGTCT
1 TTAGCGGCG-T-TTTTTCATAAGCGCCGCTAAAGAACATGATCT
* * *
45779035 TTAGCGGCGTTTTATCCTAAGCGCCGCTAAAAAACATGATCT
1 TTAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGATCT
* * * *
45779077 TTAGCGACGTTTTTTTC-TTAGCACCGCTAAAGAACGTGATCT
1 TTAGCGGCG-TTTTTTCATAAGCGCCGCTAAAGAACATGATCT
* * *
45779119 TTAGCGGCGTTTTTTCATAAGCGCCACTAAAGATCATGTTCT
1 TTAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGATCT
*
45779161 TTAGCGGTGTTTTTTCATAAGCGCCGCTAAAGAACATGATCT
1 TTAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGATCT
45779203 TTAGCGGCGATTATTTTCAT-AGCGCCGCTAAAGAACATGATCT
1 TTAGCGGCG-TT-TTTTCATAAGCGCCGCTAAAGAACATGATCT
45779246 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
45779261 TGTAAGTGCC
Statistics
Matches: 229, Mismatches: 32, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
41 13 0.06
42 136 0.59
43 69 0.30
44 11 0.05
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGATCT
Found at i:45782168 original size:9 final size:9
Alignment explanation
Indices: 45782154--45782190 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
45782144 TATAGTTTGA
45782154 TATTCGAAT
1 TATTCGAAT
45782163 TATTCGAAT
1 TATTCGAAT
*
45782172 TATTCGAGT
1 TATTCGAAT
45782181 TATTCGAAT
1 TATTCGAAT
45782190 T
1 T
45782191 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45787242 original size:88 final size:88
Alignment explanation
Indices: 45786577--45787231 Score: 1004
Period size: 88 Copynumber: 7.4 Consensus size: 88
45786567 GTGAAGATAA
* * *
45786577 CAGATCTTGCCTTCCTGCACCGACAGCGAAGGAGATCGAAGACACCAACCTTGCCTTCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
45786642 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * * * *
45786665 GAGATCTTGCCTTCCTGCACCGACAACAAAGCAAATCGAAGACACTAGCCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
45786730 GCAGCGGAGTAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * * *
45786753 CAGATCTTGCTTTCTTGCACCGACAGCGAAGCAGATTGAAGGCACTAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
45786818 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
*
45786841 CAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
45786906 ACAGCGGAACAGATTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
45786929 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACATCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
45786994 GCAGCAGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
45787017 CAGACCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCTTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
45787082 GCAGCGCAGTAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
45787105 CAGATCTTGCCTTCCTGCACCGACAGCAAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
45787170 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
45787193 CAGATCTTGCCTTACTGCACCGACAGGGAAGCAGATCGA
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
45787232 TAACCCCAAC
Statistics
Matches: 509, Mismatches: 58, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 509 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGTTAAAAATAG
Found at i:45787738 original size:44 final size:44
Alignment explanation
Indices: 45787683--45787804 Score: 165
Period size: 44 Copynumber: 2.8 Consensus size: 44
45787673 GAAGATGACG
*
45787683 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *
45787726 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * *
45787771 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
45787805 CACATCGGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 67 0.99
45 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:45788285 original size:21 final size:19
Alignment explanation
Indices: 45788238--45788293 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
45788228 AATCTTCAAG
* *
45788238 GATATGTAATATTAGATAT
1 GATATGCAATCTTAGATAT
45788257 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45788276 GATTTATGCAATCTTAGA
1 GA--TATGCAATCTTAGA
45788294 GGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 19 0.58
21 14 0.42
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45788303 original size:24 final size:24
Alignment explanation
Indices: 45788252--45788317 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
45788242 TGTAATATTA
45788252 GATATGA--TATGCAATCTT--A-
1 GATATGATTTATGCAATCTTAGAG
45788271 GATATGATTTATGCAATCTTAGAG
1 GATATGATTTATGCAATCTTAGAG
* *
45788295 GATATGATTT-TGTAATCTGAGAG
1 GATATGATTTATGCAATCTTAGAG
45788318 ATTTAATTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.17
21 11 0.28
23 12 0.30
24 10 0.25
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (24 bp):
GATATGATTTATGCAATCTTAGAG
Found at i:45788654 original size:14 final size:11
Alignment explanation
Indices: 45788621--45788651 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
45788611 TTTGATTTTC
45788621 TTGTTATTAAG
1 TTGTTATTAAG
45788632 TTGTTATTAAG
1 TTGTTATTAAG
45788643 TTGTTATTA
1 TTGTTATTA
45788652 TTATCATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (11 bp):
TTGTTATTAAG
Found at i:45788821 original size:17 final size:17
Alignment explanation
Indices: 45788790--45788833 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
45788780 CATAACTTTT
*
45788790 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
45788806 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
45788823 ATATACATTTT
1 ATATACATTTT
45788834 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:45789046 original size:28 final size:28
Alignment explanation
Indices: 45788994--45789073 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 28
45788984 ATTATTTGTT
45788994 TATATATATATGTA-ATTATCTTTTTTATAA
1 TATATATATATGTATA-TA-C-TTTTTATAA
* * *
45789024 TCTATATATATGTATATACTTTTTTTTA
1 TATATATATATGTATATACTTTTTATAA
* *
45789052 TATATGTACATGTATATA-TTTT
1 TATATATATATGTATATACTTTT
45789074 GTACCGTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 4 0.09
28 22 0.51
29 1 0.02
30 15 0.35
31 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (28 bp):
TATATATATATGTATATACTTTTTATAA
Found at i:45789048 original size:30 final size:27
Alignment explanation
Indices: 45788994--45789073 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 27
45788984 ATTATTTGTT
45788994 TATATATATATGTA-ATTATCTTTTTTATAA
1 TATATATATATGTATA-TAT-TTTTTT-T-A
*
45789024 TCTATATATATGTATATACTTTTTTTTA
1 TATATATATATGTATATA-TTTTTTTTA
* *
45789052 TATATGTACATGTATATATTTT
1 TATATATATATGTATATATTTT
45789074 GTACCGTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
27 4 0.09
28 16 0.36
29 1 0.02
30 21 0.48
31 2 0.05
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (27 bp):
TATATATATATGTATATATTTTTTTTA
Found at i:45791092 original size:99 final size:100
Alignment explanation
Indices: 45790920--45791117 Score: 265
Period size: 99 Copynumber: 2.0 Consensus size: 100
45790910 AATATAACTT
* * * * *
45790920 ATTTAAAATATGTAAAGTTAATTTAGTAATTTTCTTGACTGAGTTGGTGCCAAGTTGACTTGTGA
1 ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTGCCAAGTTAAATTATGA
45790985 CACCAACTC-ATCACACACTTAAAAAATAATATAA
66 CACCAACTCAATCACACACTTAAAAAATAATATAA
* * *
45791019 ATTTAAAATATGTAATGTTATTTTAGTAATTTCCTTGACCGAGTTGGTGTCC-CGTTAAATTATG
1 ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTG-CCAAGTTAAATTATG
* * * *
45791083 ATACTAACTCAATCACACACTTAAATAATAGTATA
65 ACACCAACTCAATCACACACTTAAAAAATAATATA
45791118 GATTATGTGA
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
99 61 0.72
100 24 0.28
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (100 bp):
ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTGCCAAGTTAAATTATGA
CACCAACTCAATCACACACTTAAAAAATAATATAA
Found at i:45791555 original size:26 final size:24
Alignment explanation
Indices: 45791519--45791583 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 24
45791509 AATATGACTT
* *
45791519 TTAAAAAAAAAAGATTAATAGTCAAA
1 TTAACAAAAAAA-ATAAATA-TCAAA
*
45791545 TTTAACTAAAATAAATAAATATCAAA
1 -TTAAC-AAAAAAAATAAATATCAAA
45791571 TTAACAAAAAAAA
1 TTAACAAAAAAAA
45791584 ATGTAAACGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
24 7 0.21
25 5 0.15
26 5 0.15
27 10 0.30
28 6 0.18
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (24 bp):
TTAACAAAAAAAATAAATATCAAA
Found at i:45791574 original size:25 final size:27
Alignment explanation
Indices: 45791518--45791585 Score: 79
Period size: 25 Copynumber: 2.6 Consensus size: 27
45791508 CAATATGACT
*
45791518 TTTAA-AAAAAAAAGATTAATAGTCAAA
1 TTTAACAAAAAAAA-ATAAATAGTCAAA
* *
45791545 TTTAACTAAAATAAATAAATA-TCAAA
1 TTTAACAAAAAAAAATAAATAGTCAAA
45791571 -TTAACAAAAAAAAAT
1 TTTAACAAAAAAAAAT
45791586 GTAAACGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 13 0.37
26 5 0.14
27 11 0.31
28 6 0.17
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (27 bp):
TTTAACAAAAAAAAATAAATAGTCAAA
Found at i:45794253 original size:16 final size:17
Alignment explanation
Indices: 45794232--45794278 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
45794222 CTTGTAGATA
45794232 AATATTAAATT-AATTT
1 AATATTAAATTCAATTT
*
45794248 AATATTAACATAATCACTTT
1 AATATTAA-AT--TCAATTT
45794268 AATATTAAATT
1 AATATTAAATT
45794279 TAATACTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 8 0.31
17 3 0.12
19 3 0.12
20 12 0.46
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATTAAATTCAATTT
Found at i:45798321 original size:13 final size:13
Alignment explanation
Indices: 45798286--45798323 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
45798276 AAGATATTTG
45798286 TAATTTGAAAACT
1 TAATTTGAAAACT
45798299 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
45798313 TAATTTGAAAA
1 TAATTTGAAAA
45798324 TTTGGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:45798637 original size:69 final size:68
Alignment explanation
Indices: 45798561--45798771 Score: 244
Period size: 69 Copynumber: 3.1 Consensus size: 68
45798551 TCACCTGTCT
* * *
45798561 TTTCTTGCAGGGAATATTTCCTATTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATCTTTCCTATTCACGCATCA-TTTCTTGCAGGGAATCTCTCCTGTTCACAC
45798626 ATCA
65 ATCA
* * * *
45798630 TTTCTTGCAGGGAATCTTTCTTGTTCACGCATCATTTCTTGCAGGGAA-CATTTCCTGTTCACGC
1 TTTCTTGCAGGGAATCTTTCCTATTCACGCATCATTTCTTGCAGGGAATC-TCTCCTGTTCACAC
*
45798694 ATTA
65 ATCA
* * * * * * * *
45798698 TTTTGTTGCAGAGAATCTCTCCTATTCACACATCATTTCTTACAGGGAATCTCTCATGTTCATAT
1 -TTTCTTGCAGGGAATCTTTCCTATTCACGCATCATTTCTTGCAGGGAATCTCTCCTGTTCACAC
45798763 ATCA
65 ATCA
45798767 TTTCT
1 TTTCT
45798772 GGAATTATTT
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
67 1 0.01
68 32 0.27
69 83 0.71
70 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (68 bp):
TTTCTTGCAGGGAATCTTTCCTATTCACGCATCATTTCTTGCAGGGAATCTCTCCTGTTCACACA
TCA
Found at i:45798683 original size:16 final size:16
Alignment explanation
Indices: 45798628--45798683 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
45798618 GTTCACACAT
45798628 CATTTCTTGCAGGGAA
1 CATTTCTTGCAGGGAA
* * *
45798644 TC-TTTCTTGTTCACGCAT
1 -CATTTCTTG--CAGGGAA
45798662 CATTTCTTGCAGGGAA
1 CATTTCTTGCAGGGAA
45798678 CATTTC
1 CATTTC
45798684 CTGTTCACGC
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
16 17 0.57
17 2 0.07
18 11 0.37
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (16 bp):
CATTTCTTGCAGGGAA
Found at i:45798729 original size:103 final size:103
Alignment explanation
Indices: 45798561--45798759 Score: 335
Period size: 103 Copynumber: 1.9 Consensus size: 103
45798551 TCACCTGTCT
* * *
45798561 TTTCTTGCAGGGAATATTTCCTATTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAACATTTCCTATTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
* * *
45798626 ATCATTTCTTGCAGGGAATCTTTCTTGTTCACGCATCA
66 ATCATTTCTTACAGGGAATCTCTCATGTTCACGCATCA
*
45798664 TTTCTTGCAGGGAACATTTCCTGTTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
1 TTTCTTGCAGGGAACATTTCCTATTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
45798729 ATCATTTCTTACAGGGAATCTCTCATGTTCA
66 ATCATTTCTTACAGGGAATCTCTCATGTTCA
45798760 TATATCATTT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 89 1.00
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (103 bp):
TTTCTTGCAGGGAACATTTCCTATTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
ATCATTTCTTACAGGGAATCTCTCATGTTCACGCATCA
Found at i:45798750 original size:34 final size:34
Alignment explanation
Indices: 45798561--45798771 Score: 217
Period size: 34 Copynumber: 6.1 Consensus size: 34
45798551 TCACCTGTCT
* * * * *
45798561 TTTCTTGCAGGGAATATTTCCTATTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
*
45798595 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * *
45798630 TTTCTTGCAGGGAATCTTTCTTGTTCACGCATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * *
45798664 TTTCTTGCAGGGAA-CATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATC-TCTCCTGTTCACACATCA
* * *
45798698 TTTTGTTGCAGAGAATCTCTCCTATTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
* * * *
45798733 TTTCTTACAGGGAATCTCTCATGTTCATATATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
45798767 TTTCT
1 TTTCT
45798772 GGAATTATTT
Statistics
Matches: 148, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
33 1 0.01
34 92 0.62
35 54 0.36
36 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
Found at i:45805740 original size:26 final size:25
Alignment explanation
Indices: 45805698--45805761 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
45805688 AGTGAGGGTT
* *
45805698 TTAAAAACAAATATAATT-TATTTGG
1 TTAAAAATAAATATAATTATAATT-G
45805723 TTAAAAATAAATATTAATTATAATTG
1 TTAAAAATAAATA-TAATTATAATTG
*
45805749 TTAAACATAAATA
1 TTAAAAATAAATA
45805762 AATACAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.35
26 18 0.53
27 4 0.12
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (25 bp):
TTAAAAATAAATATAATTATAATTG
Found at i:45805743 original size:25 final size:25
Alignment explanation
Indices: 45805698--45805761 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
45805688 AGTGAGGGTT
*
45805698 TTAAAAACAAATATAATTTAT-TTGG
1 TTAAAAATAAATATAATTTATATT-G
45805723 TTAAAAATAAATATTAA-TTATAATTG
1 TTAAAAATAAATA-TAATTTAT-ATTG
*
45805749 TTAAACATAAATA
1 TTAAAAATAAATA
45805762 AATACAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 16 0.47
26 16 0.47
27 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (25 bp):
TTAAAAATAAATATAATTTATATTG
Found at i:45809265 original size:13 final size:15
Alignment explanation
Indices: 45809243--45809278 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
45809233 ACCAATTTGT
45809243 AACATATA-TTTTAA
1 AACATATATTTTTAA
45809257 AACAT-TATTTTTAA
1 AACATATATTTTTAA
45809271 AA-ATATAT
1 AACATATAT
45809279 AGTTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AACATATATTTTTAA
Found at i:45811428 original size:125 final size:124
Alignment explanation
Indices: 45811206--45811462 Score: 363
Period size: 125 Copynumber: 2.1 Consensus size: 124
45811196 AAATAGTGGG
** * * *
45811206 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAATAGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAAGAGCCTCGTGGACGCGATT
* *
45811271 TCGCTACAGTGGTCATGTAAGAAATAATTTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGATCATGTAAGAAATAATTTTTTTTTGACG-TTTCTAAGCAAATAGTATA
* * *
45811331 AAATCGCTGATACCAGAATGCTATATGAGAAGAAATTGTGAAAT-CGCGCCCTCGTGGACGCGAT
1 AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAAGAG-CCTCGTGGACGCGAT
* * *
45811395 TTCGCTACAGTTGATCATGTAGGAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTGTC
65 TTCGCTACAG-TGATCATGTAAGAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATA
45811456 AAATCGC
1 AAATCGC
45811463 GCCCTCGTGG
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 1 0.01
125 87 0.74
126 29 0.25
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (124 bp):
AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAAGAGCCTCGTGGACGCGATT
TCGCTACAGTGATCATGTAAGAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATA
Found at i:45814761 original size:29 final size:28
Alignment explanation
Indices: 45814737--45815623 Score: 567
Period size: 23 Copynumber: 34.5 Consensus size: 28
45814727 CAGGGTAAGA
45814737 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
* *
45814766 GATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
* * *
45814795 G-TTTTCATGTAAAATAGGTTAGGGTTGGG
1 GTTTTTAAT-TAAATTAGGTTA-GGTTAGG
45814824 GTTTTTAATTAAATTAGGTTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
* *
45814852 GATTTCAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
** *
45814881 GTTTTTAATTAAATTAAATTAGCTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45814909 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45814932 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45814955 ATTTTTAATT-AA--A--TTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45814978 GTTTTTAATTAAATTATGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
*
45815007 GTTTTTAATT-AAGTA-G---GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815030 GTTTTTAATTAAATTA---T--GTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
* *
45815053 GTTTTTAATTTAATTAAGTTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45815081 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815104 GTTTTTAATT-AA--A--TTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45815127 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815150 GTTTTTAATTAAATTAGGTTA-G--A--
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815173 GTTTTTAATT--A--A-GTTA-GTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
* *
45815195 GTTTTTAATT-AAGTA-G---GGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815218 GTTTTTAATT--A--AGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
*
45815243 GTTTTTAATTAAGTTA-G---GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815267 GTTTTTAATTTAAATTAGGTTAGGGTTAGG
1 GTTTTTAA-TTAAATTAGGTTA-GGTTAGG
*
45815297 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45815320 GTTTTTAATT-AATTAAGTTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45815347 GTTTTTAATT--A--A-GTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815370 GTTTTTAATT-AA--A--TTAGGTTA-G
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
*
45815392 GTTTTTAATTAAGTTA---T--GTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815415 GTTTTTAATT-AA--A--TTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815438 GTTTTTAATTAAGTTATTTAGGGTTTTTAGGTTAGG
1 GTTTTTAATTAA---A-TTA-GG---TTAGGTTAGG
*
45815474 GTTTTTAATTAAGTTA-GTTAGGTTA-G
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
* *
45815500 GTTTTT--TT-AATTAAGTTATGTTA-G
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815524 GTTTTTAATTAAATTAGGTTAGGGTTATGTTAGG
1 GTTTTTAATTAAATTAGGTTA--G----GTTAGG
45815558 GTTTTTAATT-AA--A--TTAGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGTTAGG
45815581 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTA-GGTTAGG
*
45815610 GTTTTTAATCAAAT
1 GTTTTTAATTAAAT
45815624 AATGTCAAAA
Statistics
Matches: 727, Mismatches: 42, Indels: 178
0.77 0.04 0.19
Matches are distributed among these distances:
18 5 0.01
19 1 0.00
20 3 0.00
21 3 0.00
22 29 0.04
23 271 0.37
24 56 0.08
25 29 0.04
26 17 0.02
27 43 0.06
28 78 0.11
29 126 0.17
30 23 0.03
31 1 0.00
32 3 0.00
33 6 0.01
34 11 0.02
36 22 0.03
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.48
Consensus pattern (28 bp):
GTTTTTAATTAAATTAGGTTAGGTTAGG
Found at i:45814818 original size:58 final size:57
Alignment explanation
Indices: 45814683--45815129 Score: 248
Period size: 51 Copynumber: 8.3 Consensus size: 57
45814673 TTTTACATTA
* * * * * *
45814683 ATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAAT-GATAAATCAGGGTAAGAGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGT---T-AGGGTTAG-GGTTTTC
45814744 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
* * * * *
45814801 ATGTAAAATAGGTTAGGGTTGGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGATTTC
1 AT-TAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
* * ** *
45814858 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTA-GCTTAGGG-TTT-
1 -ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
* * * * * *
45814913 -TT-AATTAAGTTA-TGTTAGGGTTTTTAATT---A-A-GTTA-TGTTAGGATTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGG-GTTTTC
* *
45814962 ATTAAATTAGGTTAGGG-T-----TTTTAATTAAATTATGTTAGGGTTAGGG-TTT-
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
* * * * *
45815011 -TT-AATTAAG-TAGGGTTAGGGTTTTTAATTAAATTATGTTAGGG-T----TTTTA
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
* * * * *
45815060 ATTTAATTAAGTTA-GGTTAGGGTTTTTAATT---A-A-GTTA-TGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTC
45815111 ATTAAATTAGGTTAGGGTT
1 ATTAAATTAGGTTAGGGTT
45815130 TTTAATTAAG
Statistics
Matches: 320, Mismatches: 33, Indels: 75
0.75 0.08 0.18
Matches are distributed among these distances:
45 1 0.00
46 26 0.08
47 9 0.03
48 8 0.03
50 8 0.03
51 72 0.22
52 44 0.14
53 2 0.01
56 3 0.01
57 63 0.20
58 46 0.14
59 1 0.00
61 35 0.11
62 2 0.01
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (57 bp):
ATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
Found at i:45814918 original size:23 final size:24
Alignment explanation
Indices: 45814817--45815466 Score: 631
Period size: 23 Copynumber: 26.6 Consensus size: 24
45814807 AATAGGTTAG
*
45814817 GGTTGGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
45814844 AGGTTAGGGATTTCAATTAAATTAGGTT
1 -GGTTAGGGTTTTTAATTAAATTA---T
45814872 AGGGTTAGGGTTTTTAATTAAATTAAATT
1 --GGTTAGGGTTTTTAATTAAATT--A-T
* *
45814901 AGCTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
*
45814926 -GTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
45814949 -GTTAGGATTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
45814971 GGTTAGGGTTTTTAATTAAATTATGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
45814998 AGGGTTAGGGTTTTTAATT-AAGTAG
1 --GGTTAGGGTTTTTAATTAAATTAT
45815023 GGTTAGGGTTTTTAATTAAATTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
45815047 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
*
45815073 AGGTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
45815098 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
45815120 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
45815144 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
45815166 GGTTAGAGTTTTTAATTAAGTTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
45815189 -GTTAGGGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
* * *
45815211 GGTTAGAGTTTTTAATTAAGGTTAG
1 GGTTAGGGTTTTTAATTAA-ATTAT
* *
45815236 GGTTAGGGTTTTTAATTAAGTTAG
1 GGTTAGGGTTTTTAATTAAATTAT
45815260 GGTTAGGGTTTTTAATTTAAATTAGGTT
1 GGTTAGGGTTTTTAA-TTAAATTA---T
*
45815288 AGGGTTAGGGTTTTTAATTAAGTTAT
1 --GGTTAGGGTTTTTAATTAAATTAT
45815314 -GTTAGGGTTTTTAATT-AATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
*
45815339 AGGTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
45815364 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
45815386 GGTTA-GGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
45815409 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
45815431 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
45815455 --TTAGGGTTTTTA
1 GGTTAGGGTTTTTA
45815467 GGTTAGGGTT
Statistics
Matches: 541, Mismatches: 41, Indels: 86
0.81 0.06 0.13
Matches are distributed among these distances:
21 3 0.01
22 50 0.09
23 277 0.51
24 26 0.05
25 32 0.06
26 3 0.01
27 18 0.03
28 70 0.13
29 46 0.09
30 15 0.03
31 1 0.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.48
Consensus pattern (24 bp):
GGTTAGGGTTTTTAATTAAATTAT
Found at i:45814960 original size:46 final size:46
Alignment explanation
Indices: 45814863--45815606 Score: 714
Period size: 46 Copynumber: 15.9 Consensus size: 46
45814853 ATTTCAATTA
* *
45814863 AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGCTTAGGGTTTTT
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAAGTT--A-T-G-TTAGGGTTTTT
* *
45814915 AATTAAGTTATGTTAGGGTTTTTAATTAAGTTATGTTAGGATTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
* *
45814961 AATTAAATTAGGTTAGGGTTTTTAATTAAATTATGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATT--A--A-GTTA-TGTTAGGGTTTTT
*
45815013 AATTAAG-TAGGGTTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTT
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAAGTTATGTTAGGG---TT--TTT
45815064 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
*
45815110 AATTAAATTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
* *
45815156 AATTAAATTAGGTTAGAGTTTTTAATTAAGTTA-GTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
* *
45815201 AATTAAG-TAGGGTTAGAGTTTTTAATTAAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAA-GTTA-TGTTAGGGTTTTT
*
45815249 AATTAAGTTAGGGTTAGGGTTTTTAATTTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTA-GGTTAGGGTTTTTAA-TT--A--A-GTTA-TGTTAGGGTTTTT
* *
45815303 AATTAAGTTATGTTAGGGTTTTTAATTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGG--TTT--TTAATTAAGTTATGTTAGGGTTTTT
* * *
45815353 AATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTA-GGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
* * *
45815398 AATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
*
45815444 AATTAAGTTA-TTTAGGG--TTT--TT-AG----GTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
*
45815480 AATTAAGTTAGTTAGGTTAGGTTTTTTTAATTAAGTTATGTTA-GGTTTTT
1 AATT-A---AGTTAGGTTAGG-GTTTTTAATTAAGTTATGTTAGGGTTTTT
*
45815530 AATTAAATTAGGTTA-GG-----------GTTATGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
* * *
45815564 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTT
45815607 AGGGTTTTTA
Statistics
Matches: 610, Mismatches: 26, Indels: 118
0.81 0.03 0.16
Matches are distributed among these distances:
33 9 0.01
34 22 0.04
35 2 0.00
36 16 0.03
37 1 0.00
40 6 0.01
41 7 0.01
43 3 0.00
44 5 0.01
45 89 0.15
46 182 0.30
47 6 0.01
48 27 0.04
49 21 0.03
50 46 0.08
51 74 0.12
52 47 0.08
53 7 0.01
54 31 0.05
55 3 0.00
56 2 0.00
57 4 0.01
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (46 bp):
AATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
Found at i:45815477 original size:59 final size:62
Alignment explanation
Indices: 45815409--45815530 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 62
45815399 ATTAAGTTAT
45815409 GTTAGGGTTTTTAATTAA-A-TTAGGTTAGG-GTTTTTAATTAAGTTAT-TTAGGGTTTTTAG
1 GTTAGGGTTTTTAATTAATAGTTAGGTTAGGTGTTTTTAATTAAGTTATGTTA-GGTTTTTAG
*
45815468 GTTAGGGTTTTTAATTAAGTTAGTTAGGTTAGGTTTTTTTAATTAAGTTATGTTAGGTTTTTA
1 GTTAGGGTTTTTAATTAA--TAGTTAGGTTAGGTGTTTTTAATTAAGTTATGTTAGGTTTTTA
45815531 ATTAAATTAG
Statistics
Matches: 56, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
59 18 0.32
62 1 0.02
63 10 0.18
64 24 0.43
65 3 0.05
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (62 bp):
GTTAGGGTTTTTAATTAATAGTTAGGTTAGGTGTTTTTAATTAAGTTATGTTAGGTTTTTAG
Found at i:45815531 original size:22 final size:22
Alignment explanation
Indices: 45815468--45815546 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 22
45815458 GGGTTTTTAG
45815468 GTTAGGGTTTTTAATTAAGTTAGTT
1 GTTA-GGTTTTTAATTAAGTTA--T
45815493 AGGTTAGGTTTTTTTAATTAAGTTAT
1 --GTTAGG--TTTTTAATTAAGTTAT
* *
45815519 GTTAGGTTTTTAATTAAATTAG
1 GTTAGGTTTTTAATTAAGTTAT
45815541 GTTAGG
1 GTTAGG
45815547 GTTATGTTAG
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
22 20 0.42
24 6 0.12
26 3 0.06
27 4 0.08
28 15 0.31
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.51
Consensus pattern (22 bp):
GTTAGGTTTTTAATTAAGTTAT
Found at i:45815551 original size:33 final size:34
Alignment explanation
Indices: 45815514--45815583 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
45815504 TTTTAATTAA
45815514 GTTATGTTA-GGTTTTTAATTAAATTAGGTTAGG
1 GTTATGTTAGGGTTTTTAATTAAATTAGGTTAGG
45815547 GTTATGTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTATGTTAGGGTTTTTAATTAAATTAGGTTAGG
45815581 GTT
1 GTT
45815584 TTTAATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 9 0.25
34 27 0.75
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (34 bp):
GTTATGTTAGGGTTTTTAATTAAATTAGGTTAGG
Found at i:45817779 original size:14 final size:15
Alignment explanation
Indices: 45817762--45817795 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
45817752 AATAAATATC
45817762 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
45817776 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
45817791 TAAAA
1 TAAAA
45817796 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:45817928 original size:29 final size:30
Alignment explanation
Indices: 45817894--45817950 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
45817884 TGAAAATATT
45817894 AAAAATTTTAAAATTAT-TTAAAAAAATAA
1 AAAAATTTTAAAATTATCTTAAAAAAATAA
*
45817923 AAAAATTTTAAAATTTTCTTAAAAAAAT
1 AAAAATTTTAAAATTATCTTAAAAAAAT
45817951 GAAATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (30 bp):
AAAAATTTTAAAATTATCTTAAAAAAATAA
Found at i:45818022 original size:22 final size:22
Alignment explanation
Indices: 45817992--45818033 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
45817982 ATTTGGAGAT
*
45817992 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
45818014 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
45818034 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:45818041 original size:30 final size:30
Alignment explanation
Indices: 45818005--45818063 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45817995 TTGAAGGAAA
*
45818005 TTGAGAGGATTTTGGAA-GGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGGAA-TTGAGAGT
45818035 TTGAGAGAATTTTGGAAGGGAATTGAGAG
1 TTGAGAGAATTTTGGAAGGGAATTGAGAG
45818064 AATTTTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGGAATTGAGAGT
Found at i:45818059 original size:52 final size:51
Alignment explanation
Indices: 45817983--45818082 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 51
45817973 TTAATATGGA
* * * *
45817983 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAAGGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
* *
45818034 TTTGAGAGAATTTTGGAAGGGAATTGAGAGAATTTTTGAAGGAAATTGA
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGA
45818083 TATTGAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 4 0.10
52 38 0.90
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
Found at i:45818060 original size:22 final size:22
Alignment explanation
Indices: 45818035--45818082 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
45818025 ATTTGAGAGT
*
45818035 TTGAGAGAATTTTGGAAGGGAA
1 TTGAGAGAATTTTGGAAGGAAA
*
45818057 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
45818079 TTGA
1 TTGA
45818083 TATTGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:45818519 original size:30 final size:30
Alignment explanation
Indices: 45818480--45818538 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
45818470 GGAGGTGGGA
*
45818480 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAA-ATTTAGGGGAAAAG
* *
45818511 TGGG-AGGGAGTAAAAATTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTAGGGGAAAA
45818539 ATAAAAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 10 0.40
31 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.41, T:0.19
Consensus pattern (30 bp):
TGGGAAGGGAATAAAAATTTAGGGGAAAAG
Found at i:45819190 original size:21 final size:21
Alignment explanation
Indices: 45819164--45819206 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
45819154 CTAAACAATA
*
45819164 TAATGGTTTTGCCTTATAACT
1 TAATGGTTTTGACTTATAACT
*
45819185 TAATGGTTTTGACTTTTAACT
1 TAATGGTTTTGACTTATAACT
45819206 T
1 T
45819207 TAGAAGAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.51
Consensus pattern (21 bp):
TAATGGTTTTGACTTATAACT
Found at i:45819563 original size:29 final size:29
Alignment explanation
Indices: 45819531--45819586 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
45819521 AAGGCTGGTT
45819531 TTTTTTCAA-AATTTACCGAAATGGGCCGG
1 TTTTTT-AATAATTTACCGAAATGGGCCGG
* *
45819560 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAATAATTTACCGAAATGGGCC
45819587 ATTTTCCGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (29 bp):
TTTTTTAATAATTTACCGAAATGGGCCGG
Found at i:45831650 original size:42 final size:42
Alignment explanation
Indices: 45831578--45831679 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
45831568 TGAACACGCT
* *
45831578 AACAGAAGCTCATAAGAGTTGAACAGAAACTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACTCAAAAGAGCTG
* ** *
45831620 AACAGAAGCTCA-AATGAGCTAAACATAAACTCGTAAGAGGTG
1 AACAGAAGCTCATAA-GAGCTAAACAGAAACTCAAAAGAGCTG
*
45831662 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTCATAAGAG
45831680 GTGATCCACC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 2 0.04
42 47 0.92
43 2 0.04
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.15
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACTCAAAAGAGCTG
Found at i:45831683 original size:21 final size:21
Alignment explanation
Indices: 45831578--45831679 Score: 107
Period size: 21 Copynumber: 4.9 Consensus size: 21
45831568 TGAACACGCT
*
45831578 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
* *
45831599 AACAGAAACTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
45831620 AACAGAAGCTCA-AATGAGCTA
1 AACAGAAGCTCATAA-GAGCTG
* * * *
45831641 AACATAAACTCGTAAGAGGTG
1 AACAGAAGCTCATAAGAGCTG
*
45831662 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTCATAAGAG
45831680 GTGATCCACC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 2 0.03
21 63 0.94
22 2 0.03
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:45833058 original size:20 final size:22
Alignment explanation
Indices: 45833024--45833064 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
45833014 CTTTACTTTT
*
45833024 CACACTCATTCCATATGCATAA
1 CACACTCATTCCATAAGCATAA
45833046 CACAC-CATT-CATAAGCATA
1 CACACTCATTCCATAAGCATA
45833065 TTATTCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.39, C:0.32, G:0.05, T:0.24
Consensus pattern (22 bp):
CACACTCATTCCATAAGCATAA
Found at i:45833637 original size:42 final size:42
Alignment explanation
Indices: 45833569--45833692 Score: 133
Period size: 42 Copynumber: 3.0 Consensus size: 42
45833559 AGGCTAAATA
** * *
45833569 GAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTGAAC-
1 GAAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACT
*** * * *
45833610 GAAAGCTTGTAAGAGCTGAACGAAAACCTATAAGAGTTAAACT
1 G-AAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACT
*
45833653 GAAGCTCAAAAGAGCTGAACGAAAACCCATTAGGGTTGAA
1 GAAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAA
45833693 TGGAAACTCA
Statistics
Matches: 66, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
GAAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACT
Found at i:45833643 original size:21 final size:21
Alignment explanation
Indices: 45833579--45833679 Score: 62
Period size: 21 Copynumber: 4.8 Consensus size: 21
45833569 GAAGCTCATG
* * *
45833579 AGAGCTAAACGGAAACCCATA
1 AGAGCTGAACGAAAACCTATA
* * * * *
45833600 AGGGTTGAACGAAAGCTTGTA
1 AGAGCTGAACGAAAACCTATA
45833621 AGAGCTGAACGAAAACCTATA
1 AGAGCTGAACGAAAACCTATA
* * * *
45833642 AGAGTTAAACTG--AAGCTCAAA
1 AGAGCTGAAC-GAAAACCT-ATA
45833663 AGAGCTGAACGAAAACC
1 AGAGCTGAACGAAAACC
45833680 CATTAGGGTT
Statistics
Matches: 56, Mismatches: 20, Indels: 7
0.67 0.24 0.08
Matches are distributed among these distances:
20 5 0.09
21 47 0.84
22 4 0.07
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
AGAGCTGAACGAAAACCTATA
Found at i:45833855 original size:25 final size:24
Alignment explanation
Indices: 45833800--45833884 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
45833790 ATTTTTCGTT
* * *
45833800 AATTCATCATTTGCATATATCGCC
1 AATTCATCCTTTGCATATACCGTC
* *
45833824 AATTCATCCTTTGCATTTTACTGTC
1 AATTCATCCTTTGCA-TATACCGTC
45833849 AATTCATCCTTTGCATATACCGTC
1 AATTCATCCTTTGCATATACCGTC
45833873 AATTCATCCTTT
1 AATTCATCCTTT
45833885 ACCACAAAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
24 33 0.62
25 20 0.38
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (24 bp):
AATTCATCCTTTGCATATACCGTC
Found at i:45835252 original size:25 final size:24
Alignment explanation
Indices: 45835194--45835287 Score: 161
Period size: 24 Copynumber: 3.9 Consensus size: 24
45835184 TGGGTACATT
45835194 TACCGTCAATTCATCCTTTGCATA
1 TACCGTCAATTCATCCTTTGCATA
*
45835218 TACCGTCAATTCATCCTTTGCATTT
1 TACCGTCAATTCATCCTTTGCA-TA
45835243 TACCGTCAATTCATCCTTTGCATA
1 TACCGTCAATTCATCCTTTGCATA
*
45835267 TACCGTCAATTCATCATTTGC
1 TACCGTCAATTCATCCTTTGC
45835288 CACAGAACGA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
24 43 0.65
25 23 0.35
ACGTcount: A:0.23, C:0.29, G:0.09, T:0.39
Consensus pattern (24 bp):
TACCGTCAATTCATCCTTTGCATA
Found at i:45835261 original size:49 final size:49
Alignment explanation
Indices: 45835192--45835287 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
45835182 CTTGGGTACA
*
45835192 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCCTTTGCAT
1 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGCAT
45835241 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGC
1 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGC
45835288 CACAGAACGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (49 bp):
TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGCAT
Found at i:45838373 original size:46 final size:46
Alignment explanation
Indices: 45838299--45838621 Score: 529
Period size: 46 Copynumber: 7.0 Consensus size: 46
45838289 ACATTGCTAT
* *
45838299 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
45838345 AACTCAGTATGGTTTTCTTTACCAAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* *
45838391 AACTCAGTATGGTTTTCTTTACCGAAACACCATACCTACTTTTAAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
45838437 AACTCAATATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
45838483 AACTCAGAATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
45838529 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
45838575 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
45838621 A
1 A
45838622 CTTTTCCATG
Statistics
Matches: 258, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 258 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
Found at i:45843398 original size:44 final size:42
Alignment explanation
Indices: 45843330--45843443 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
45843320 ACTGTGACAT
* * *
45843330 CGTGTAAGACCACGTCTGGAACATTGGCCTCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCCTC-ATATGAGA-TTA
* *
45843374 CGTGTAAGACCATGTCTGGGACATTGGCGTCATATGTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCCTCATATGAGATTA
* * *
45843416 CGTGTAAGACCCTGTCTGAGACAGTGGC
1 CGTGTAAGACCATGTCTGGGACATTGGC
45843444 ATAGTTATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 28 0.45
43 6 0.10
44 28 0.45
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCCTCATATGAGATTA
Done.