Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 175 of 196
Found at i:51021259 original size:7 final size:7
Alignment explanation
Indices: 51021217--51021259 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
51021207 GAAGGATAGG
51021217 AGGAAGT
1 AGGAAGT
* *
51021224 GGGAAAT
1 AGGAAGT
51021231 AGGAAGT
1 AGGAAGT
51021238 AGGAAGT
1 AGGAAGT
*
51021245 AGAAAAGT
1 AG-GAAGT
51021253 AGGAAGT
1 AGGAAGT
51021260 TAAATTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.14
Consensus pattern (7 bp):
AGGAAGT
Found at i:51031943 original size:3 final size:3
Alignment explanation
Indices: 51031935--51031970 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
51031925 GATGTAAAAC
51031935 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51031971 GAAAACAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51048635 original size:27 final size:27
Alignment explanation
Indices: 51048600--51048666 Score: 107
Period size: 27 Copynumber: 2.4 Consensus size: 27
51048590 TTTCTATTGT
*
51048600 TTTTTTGCTTATTTAAGTTAGTTTTTG
1 TTTTTTGCTTATTTAAGTTAATTTTTG
51048627 TTTTTTGCTTATTTAAGTTAATTTTTG
1 TTTTTTGCTTATTTAAGTTAATTTTTG
51048654 TTGTTTTAGCTTA
1 TT-TTTT-GCTTA
51048667 CTGATTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
27 28 0.76
28 4 0.11
29 5 0.14
ACGTcount: A:0.16, C:0.04, G:0.13, T:0.66
Consensus pattern (27 bp):
TTTTTTGCTTATTTAAGTTAATTTTTG
Found at i:51049100 original size:17 final size:17
Alignment explanation
Indices: 51049078--51049119 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
51049068 TTGGTTAAAA
*
51049078 ATTAACCGACTTAACTG
1 ATTAACCGACTTAACCG
51049095 ATTAACCGACTTAACCG
1 ATTAACCGACTTAACCG
51049112 ATTTAACC
1 A-TTAACC
51049120 AAATTGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (17 bp):
ATTAACCGACTTAACCG
Found at i:51049108 original size:9 final size:9
Alignment explanation
Indices: 51049079--51049119 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
51049069 TGGTTAAAAA
51049079 TTAACCGAC
1 TTAACCGAC
*
51049088 TTAACTGA-
1 TTAACCGAC
51049096 TTAACCGAC
1 TTAACCGAC
*
51049105 TTAACCGAT
1 TTAACCGAC
51049114 TTAACC
1 TTAACC
51049120 AAATTGAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (9 bp):
TTAACCGAC
Found at i:51049187 original size:17 final size:17
Alignment explanation
Indices: 51049165--51049225 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
51049155 TTTGAATCAC
51049165 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
51049182 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
51049202 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
51049219 TACATAA
1 TACATAA
51049226 AAATGAAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:51049198 original size:37 final size:37
Alignment explanation
Indices: 51049123--51049225 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
51049113 TTTAACCAAA
51049123 TTGAATCACTACATAATTAAAAA-A--A-ATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
51049156 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
51049193 TTGAATCACTACATAATTAAAAACATTACATAA
1 TTGAATCACTACATAATTAAAAACATTACATAA
51049226 AAATGAAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
33 23 0.35
34 1 0.02
36 1 0.02
37 41 0.62
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.31
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:51049207 original size:20 final size:20
Alignment explanation
Indices: 51049148--51049208 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
51049138 ATTAAAAAAA
51049148 ATAAGTCTTTGAATCACTAC
1 ATAAGTCTTTGAATCACTAC
** * *
51049168 ATAA---TTAAAAACATTAC
1 ATAAGTCTTTGAATCACTAC
51049185 ATAAGTCTTTGAATCACTAC
1 ATAAGTCTTTGAATCACTAC
51049205 ATAA
1 ATAA
51049209 TTAAAAACAT
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
17 13 0.43
20 17 0.57
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAAGTCTTTGAATCACTAC
Found at i:51051626 original size:6 final size:7
Alignment explanation
Indices: 51051608--51051632 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51051598 AATAAAGATG
51051608 TAAAAAT
1 TAAAAAT
51051615 TAAAAAT
1 TAAAAAT
51051622 TAAAAAT
1 TAAAAAT
51051629 TAAA
1 TAAA
51051633 TGTTTATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAAAAT
Found at i:51053210 original size:2 final size:2
Alignment explanation
Indices: 51053205--51053233 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
51053195 TCTCACACAC
51053205 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51053234 ATTTTTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51056395 original size:24 final size:27
Alignment explanation
Indices: 51056344--51056402 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51056334 CATATAACTC
*
51056344 CAATTCAATCATAATTTCTCACATTTT
1 CAATTCAATCATAATTTCTCACACTTT
*
51056371 CAATTCAATCAT-TTTTC-CAC-CTTT
1 CAATTCAATCATAATTTCTCACACTTT
51056395 CAA-TCAAT
1 CAATTCAAT
51056403 AATTAATCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 5 0.17
24 6 0.20
25 3 0.10
26 4 0.13
27 12 0.40
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.42
Consensus pattern (27 bp):
CAATTCAATCATAATTTCTCACACTTT
Found at i:51056412 original size:23 final size:24
Alignment explanation
Indices: 51056368--51056413 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
51056358 TTTCTCACAT
* **
51056368 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
51056392 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
51056414 AAATTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:51056560 original size:3 final size:3
Alignment explanation
Indices: 51056552--51056583 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
51056542 TAATTCTCAC
51056552 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
51056584 CTTACCTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51057240 original size:14 final size:14
Alignment explanation
Indices: 51057220--51057256 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
51057210 CTAATTTTTC
51057220 CTTTCTTTCTCTTT
1 CTTTCTTTCTCTTT
* *
51057234 TTTTCTTTTTCTTT
1 CTTTCTTTCTCTTT
51057248 CTTTCTTTC
1 CTTTCTTTC
51057257 GCCCCTGTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
CTTTCTTTCTCTTT
Found at i:51057795 original size:9 final size:9
Alignment explanation
Indices: 51057781--51057829 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
51057771 AATTTGAATA
51057781 AATAATTAT
1 AATAATTAT
51057790 AATAATTAT
1 AATAATTAT
51057799 AATAATTAT
1 AATAATTAT
51057808 -ATAGA-TAT
1 AATA-ATTAT
*
51057816 AATATTTAT
1 AATAATTAT
51057825 AATAA
1 AATAA
51057830 CTTGAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 6 0.17
9 29 0.83
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (9 bp):
AATAATTAT
Found at i:51058927 original size:16 final size:16
Alignment explanation
Indices: 51058906--51058944 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
51058896 ATAACAATAG
51058906 AAGCACAGCAAAGTCA
1 AAGCACAGCAAAGTCA
51058922 AAGCACAGCAAAGTCA
1 AAGCACAGCAAAGTCA
51058938 AAGCACA
1 AAGCACA
51058945 AATACTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.26, G:0.18, T:0.05
Consensus pattern (16 bp):
AAGCACAGCAAAGTCA
Found at i:51071910 original size:29 final size:29
Alignment explanation
Indices: 51071858--51071937 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
51071848 CAAATTTAGT
51071858 TATATATATACATAAATACATTTTCATAA-
1 TATATATATACATAAATACATTTT-ATAAC
* * **
51071887 TATATATGTACATATATATTTTTTATAAC
1 TATATATATACATAAATACATTTTATAAC
* *
51071916 TTATATATATATATACATACAT
1 -TATATATATACATAAATACAT
51071938 ACATACATAC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
28 4 0.10
29 20 0.50
30 16 0.40
ACGTcount: A:0.44, C:0.09, G:0.01, T:0.46
Consensus pattern (29 bp):
TATATATATACATAAATACATTTTATAAC
Found at i:51072007 original size:47 final size:47
Alignment explanation
Indices: 51071955--51072045 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
51071945 TACGTACTCA
* * *
51071955 TATATATATTTTATATATTT-TGTAATTTATATACATGTTTATATATC
1 TATATATATTTTATATTTTTATG-AATATATATACATGCTTATATATC
*
51072002 TATATATATTTTCTATTTTTATGAATATATATACATGCTTATAT
1 TATATATATTTTATATTTTTATGAATATATATACATGCTTATAT
51072046 TTTTTAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 37 0.95
48 2 0.05
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.56
Consensus pattern (47 bp):
TATATATATTTTATATTTTTATGAATATATATACATGCTTATATATC
Found at i:51072725 original size:108 final size:107
Alignment explanation
Indices: 51072441--51072761 Score: 491
Period size: 109 Copynumber: 3.0 Consensus size: 107
51072431 TTAAAAAAGA
* * *
51072441 AAAATTTTCAAAGTAAGGCAATATTTTGTGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTG
1 AAAA-TTTCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
*
51072506 CGTTTCGATCTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
65 GGTTTCGAT-TTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* *
51072550 AATAATTCCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTG
1 AA-AATTTCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
51072615 GGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
65 GGTTTCGA-TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
* * * *
51072659 AAAATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCAAGAAAACGTGCTCTAATGTGCTGG
1 AAAATTTCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
* *
51072724 GTTTCGA-TTTCTCATTGGACCAAATAGCCAAATATCCT
66 GTTTCGATTTTCTCGTTCGACCAAATAGCCAAATATCCT
51072762 CTTATATCTT
Statistics
Matches: 196, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
106 29 0.15
108 64 0.33
109 100 0.51
110 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (107 bp):
AAAATTTCAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
GTTTCGATTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
Found at i:51076450 original size:3 final size:3
Alignment explanation
Indices: 51076444--51076493 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
51076434 AAAAAATAAG
*
51076444 GAA GAA GAA GAA -AA -AA GAAA GAA GAA GAA GAA -AA GAA AAA GAA
1 GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA
51076487 -AA GAA GA
1 GAA GAA GA
51076494 GGCTAAAGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 8 0.20
3 30 0.73
4 3 0.07
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51076459 original size:20 final size:20
Alignment explanation
Indices: 51076430--51076493 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
51076420 TTAAAAAAAG
* *
51076430 AGAA-AAAAAATAAGGAAGA
1 AGAAGAAAAAAGAAAGAAGA
51076449 AGAAGAAAAAAGAAAGAAGA
1 AGAAGAAAAAAGAAAGAAGA
51076469 AGAAGAAAAGAA-AAAGAA-A
1 AGAAGAAAA-AAGAAAGAAGA
51076488 AGAAGA
1 AGAAGA
51076494 GGCTAAAGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.27
20 28 0.68
21 2 0.05
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (20 bp):
AGAAGAAAAAAGAAAGAAGA
Found at i:51076467 original size:14 final size:13
Alignment explanation
Indices: 51076448--51076493 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
51076438 AATAAGGAAG
51076448 AAGAAGAAAAAAGA
1 AAGAAG-AAAAAGA
*
51076462 AAGAAGAAGAAG-
1 AAGAAGAAAAAGA
51076474 AA-AAGAAAAAGAA
1 AAGAAGAAAAAG-A
51076487 AAGAAGA
1 AAGAAGA
51076494 GGCTAAAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.30
12 2 0.07
13 7 0.26
14 10 0.37
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAAGA
Found at i:51076467 original size:17 final size:18
Alignment explanation
Indices: 51076445--51076491 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 18
51076435 AAAAATAAGG
51076445 AAGAAGAAGAA-AAAAGA
1 AAGAAGAAGAAGAAAAGA
51076462 AAGAAGAAGAAGAAAAGA
1 AAGAAGAAGAAGAAAAGA
51076480 AA-AAGAA-AAGAA
1 AAGAAGAAGAAGAA
51076492 GAGGCTAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.17
17 16 0.55
18 8 0.28
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AAGAAGAAGAAGAAAAGA
Found at i:51077883 original size:89 final size:89
Alignment explanation
Indices: 51077732--51078044 Score: 412
Period size: 89 Copynumber: 3.6 Consensus size: 89
51077722 CAGATCAGTC
51077732 AAGATAGCAGATCTTGCCTTCCTGTACTGAC-AGCGAAGCAGATCGAAGACACCAACCTTGCCTT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACGA-CGAAGCAGATCGAAGACACCAACCTTGCCTT
* * *
51077796 CCTGTACTGACAGTGGAGCAAACTT
65 CCTGTACTGACAGCGGAGCAGACTG
* * * *
51077821 AAGATAGCAGATCTTGCCTTCTTGTACTGACGACGAAGTAGATCGAAAACACCAACCTTGCCTTT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACGACGAAGCAGATCGAAGACACCAACCTTGCCTTC
51077886 CTGTACTGACAGCGGAGCAGACTG
66 CTGTACTGACAGCGGAGCAGACTG
* * * *
51077910 AGGATAGTAGATCTTGCCTT-C---AC-G--G-TGAAGCAGATCGAAGACACCATCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACGACGAAGCAGATCGAAGACACCAACCTTGCCTTC
51077967 CTGTACTGACAGCGGAGCAGACTG
66 CTGTACTGACAGCGGAGCAGACTG
* * *
51077991 AAGATAGCAGATCTTGCCTTCCTATACTGAC-AGTGAAGCAGATTGAAGACACCA
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACGA-CGAAGCAGATCGAAGACACCA
51078045 TAGTTTGCAG
Statistics
Matches: 196, Mismatches: 18, Indels: 20
0.84 0.08 0.09
Matches are distributed among these distances:
81 69 0.35
82 2 0.01
84 1 0.01
85 4 0.02
86 1 0.01
89 118 0.60
90 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (89 bp):
AAGATAGCAGATCTTGCCTTCCTGTACTGACGACGAAGCAGATCGAAGACACCAACCTTGCCTTC
CTGTACTGACAGCGGAGCAGACTG
Found at i:51077975 original size:81 final size:81
Alignment explanation
Indices: 51077855--51078011 Score: 260
Period size: 81 Copynumber: 1.9 Consensus size: 81
51077845 TACTGACGAC
* * * *
51077855 GAAGTAGATCGAAAACACCAACCTTGCCTTTCTGTACTGACAGCGGAGCAGACTGAGGATAGTAG
1 GAAGCAGATCGAAAACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAG
51077920 ATCTTGCCTTCACGGT
66 ATCTTGCCTTCACGGT
* *
51077936 GAAGCAGATCGAAGACACCATCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAG
1 GAAGCAGATCGAAAACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAG
51078001 ATCTTGCCTTC
66 ATCTTGCCTTC
51078012 CTATACTGAC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.22
Consensus pattern (81 bp):
GAAGCAGATCGAAAACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAG
ATCTTGCCTTCACGGT
Found at i:51078124 original size:44 final size:42
Alignment explanation
Indices: 51078076--51078277 Score: 130
Period size: 44 Copynumber: 4.7 Consensus size: 42
51078066 AAAGATAACA
*
51078076 AATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG
1 AATCTTATCTTCCCAAGCAGTAGTGGAGCAGATCGAAGAT--TG
* **
51078120 AATCTTATCTTCCCAAG--TTAGTGGAAAAGCAGATTTAAGCAATT-
1 AATCTTATCTTCCCAAGCAGTAGTGG---AGCAGATCGAAG--ATTG
* * * * * *
51078164 AGTCCTATC-TCCCGAAGCAGTGGTGGAGTAGGTTGAAGATTG
1 AATCTTATCTTCCC-AAGCAGTAGTGGAGCAGATCGAAGATTG
*
51078206 CAGATCCTATC-TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTG
1 -A-ATCTTATCTTCCC-AAGCAGTAGTGGAGCAGATCGAAGAT--TG
*
51078252 AATCTTATTTTCCCAAG-A-TAGTGGAG
1 AATCTTATCTTCCCAAGCAGTAGTGGAG
51078278 AAACAGATTT
Statistics
Matches: 125, Mismatches: 19, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
41 3 0.02
42 14 0.11
43 15 0.12
44 68 0.54
45 16 0.13
46 7 0.06
47 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
AATCTTATCTTCCCAAGCAGTAGTGGAGCAGATCGAAGATTG
Found at i:51078354 original size:44 final size:44
Alignment explanation
Indices: 51078303--51078411 Score: 175
Period size: 44 Copynumber: 2.5 Consensus size: 44
51078293 ATTAGCCCTA
*
51078303 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGA-TCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TG
*
51078347 TCTCCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTCTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
*
51078391 TCTCCTTAAGCAGTAGTGGAG
1 TCTCCCTAAGCAGTAGTGGAG
51078412 CAAATCAAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 58 0.97
45 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
Found at i:51078379 original size:132 final size:132
Alignment explanation
Indices: 51078077--51078366 Score: 474
Period size: 132 Copynumber: 2.2 Consensus size: 132
51078067 AAGATAACAA
* *
51078077 ATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGTTAGT
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
* *
51078142 GGAAAAGCAGATTTAAGCAATTAGTCCTATCTCCCGAAGCAGTGGTGGAGTAGGTTGAAGATTGC
66 GGAAAAGCAGATTTAAGCAATTAGCCCTATCTCCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGC
51078207 AG
131 AG
* *
51078209 ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTTCCCAAGATAGT
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
* *
51078274 GGAGAAA-CAGATTTAAGCCATTAGCCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
66 GGA-AAAGCAGATTTAAGCAATTAGCCCTATCTCCCGAAGCAGTAGTGGAGTAGGTTGAAGATTG
*
51078338 TAG
130 CAG
*
51078341 ATCTTGTCTCCCTAAGCAGTAGTGGA
1 ATCTTATCTCCCTAAGCAGTAGTGGA
51078367 ATAGGTTGAA
Statistics
Matches: 146, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 143 0.98
133 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
GGAAAAGCAGATTTAAGCAATTAGCCCTATCTCCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGC
AG
Found at i:51078599 original size:101 final size:100
Alignment explanation
Indices: 51078433--51078618 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 100
51078423 CAGTGAATCA
* * * *
51078433 TACTTCCCTTGCGGTGCAGTGGAACAGATTGAAGCTACAACGATGAATCTTGCTTCCCCAACATT
1 TACTTCCCTAGCGATGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGCTTCCCCAACATT
51078498 GCAATTAAAAAGATTGAAGCTGCAACGGTGAATTT
66 GCAATTAAAAAGATTGAAGCTGCAACGGTGAATTT
* * * *
51078533 TACTTCCCTAGCGATGTAGTGGGGACAAATTGAAGCTACGAC-AGCGAATCTTGCTTCCCCGACA
1 TACTTCCCTAGCGATGCAGT-GGAACAAATTGAAGCTACAACGA-CGAATCTTGCTTCCCCAACA
* *
51078597 TTGTAGTTAAAAAGATTGAAGC
64 TTGCAATTAAAAAGATTGAAGC
51078619 CATACATTAC
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
100 18 0.24
101 56 0.76
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
TACTTCCCTAGCGATGCAGTGGAACAAATTGAAGCTACAACGACGAATCTTGCTTCCCCAACATT
GCAATTAAAAAGATTGAAGCTGCAACGGTGAATTT
Found at i:51078768 original size:44 final size:41
Alignment explanation
Indices: 51078673--51079006 Score: 175
Period size: 44 Copynumber: 7.8 Consensus size: 41
51078663 TCGCGTCCAG
* * * *
51078673 TCTTATCTCCCTGAAGTTGCAGTGGAGAAGACGAAAGAAACTAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAA-ATAC-AA
* * *
51078717 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAGA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAAA-TACA-A
** ** * *** *
51078761 TCTTATCTATCTAAAGTTGCAGTATAGTAGATCGCATCCAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATAAAATACAA
* * * *
51078802 TTTTATCTTCCTGAAGTTGCAGTGGAGCAGACAGAAGA-AGCCAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATA-AA-ATA--CAA
* * * *
51078846 TCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCATAGA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAAA-TACA-A
** * * *** * *
51078890 TCTTATCTTTCTGAAGTTGCAGTTGAGCAGATCGCATCCAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATAAAATACAA
* * *
51078931 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATAACAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCA-GAT-AAAAT-ACAA
* *
51078975 TCTTATCTCCCTAAAGTTACAGTGGAGAAGAT
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
51079007 TGAAGCTGTT
Statistics
Matches: 212, Mismatches: 65, Indels: 27
0.70 0.21 0.09
Matches are distributed among these distances:
41 49 0.23
42 6 0.03
43 13 0.06
44 142 0.67
45 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (41 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATAAAATACAA
Found at i:51078854 original size:129 final size:127
Alignment explanation
Indices: 51078624--51079001 Score: 479
Period size: 129 Copynumber: 2.9 Consensus size: 127
51078614 GAAGCCATAC
* * * *
51078624 ATTACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCGTCCAGTCTTATCTCCCTGAAG
1 ATTACAGATCTTATCTATCTGAAGTTGCAGTATAGCAGATCGCATCCAGTCTTATCTCCCTGAAG
* * *
51078689 TTGCAGTGGAGAAGACGAAAGAAACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
66 TTGCAGTGGAGCAGACG-AAG-AACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
* * * * *
51078753 ATTACAGATCTTATCTATCTAAAGTTGCAGTATAGTAGATCGCATCCAATTTTATCTTCCTGAAG
1 ATTACAGATCTTATCTATCTGAAGTTGCAGTATAGCAGATCGCATCCAGTCTTATCTCCCTGAAG
51078818 TTGCAGTGGAGCAGACAGAAGAAGCCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
66 TTGCAGTGGAGCAGAC-GAAGAA-CCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
** * * *
51078882 ACCATAGATCTTATCTTTCTGAAGTTGCAGT-TGAGCAGATCGCATCCAGTCTTATCTCCCTAAA
1 ATTACAGATCTTATCTATCTGAAGTTGCAGTAT-AGCAGATCGCATCCAGTCTTATCTCCCTGAA
* ** * * *
51078946 GTTGTAGTGGAGCAGGTTGAAGATAACAATCTTATCTCCCTAAAGTTACAGTGGAG
65 GTTGCAGTGGAGCA-GACGAAGA-ACCAATCCTATCTCCCTAAAGTTGCAGTGGAG
51079002 AAGATTGAAG
Statistics
Matches: 216, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
128 3 0.01
129 210 0.97
130 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (127 bp):
ATTACAGATCTTATCTATCTGAAGTTGCAGTATAGCAGATCGCATCCAGTCTTATCTCCCTGAAG
TTGCAGTGGAGCAGACGAAGAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
Found at i:51078992 original size:85 final size:85
Alignment explanation
Indices: 51078849--51079006 Score: 185
Period size: 85 Copynumber: 1.9 Consensus size: 85
51078839 AAGCCAATCC
* * ** * * *
51078849 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTTTCTGAAGTTGCAGTT
1 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATCTCCCTAAAGTTACAGTG
*
51078914 GAGCAGATCGCATCCAGTCT
66 GAGAAGATCGCATCCAGTCT
* * *
51078934 TATCTCCCTAAAGTTGTAGTGGAGCAGG-TTGAAGATAACA-ATCTTATCTCCCTAAAGTTACAG
1 TATCTCCCTAAAGTTGCAGTGGAGC-GGATT-AAAACAACAGATCTTATCTCCCTAAAGTTACAG
51078997 TGGAGAAGAT
64 TGGAGAAGAT
51079007 TGAAGCTGTT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
85 53 0.88
86 7 0.12
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (85 bp):
TATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACAACAGATCTTATCTCCCTAAAGTTACAGTG
GAGAAGATCGCATCCAGTCT
Found at i:51079026 original size:44 final size:44
Alignment explanation
Indices: 51078934--51079036 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 44
51078924 CATCCAGTCT
** * * *
51078934 TATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATAACAATCT
1 TATCTCCCTAAAGTTACAGTGGAGAAGATTGAAGATAACAATCC
* ***
51078978 TATCTCCCTAAAGTTACAGTGGAGAAGATTGAAGCTGTTAATCC
1 TATCTCCCTAAAGTTACAGTGGAGAAGATTGAAGATAACAATCC
*
51079022 TATCTCCTTAAAGTT
1 TATCTCCCTAAAGTT
51079037 GTAGAGGAGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (44 bp):
TATCTCCCTAAAGTTACAGTGGAGAAGATTGAAGATAACAATCC
Found at i:51080521 original size:20 final size:20
Alignment explanation
Indices: 51080480--51080521 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
51080470 TACCATTAGT
*
51080480 TTACTATTATCATTTTTATA
1 TTACTATTATCATTATTATA
*
51080500 TTACTATTA-CTATTATTGTA
1 TTACTATTATC-ATTATTATA
51080520 TT
1 TT
51080522 TTTTTTACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.60
Consensus pattern (20 bp):
TTACTATTATCATTATTATA
Found at i:51080757 original size:47 final size:47
Alignment explanation
Indices: 51080679--51080769 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
51080669 TACGTACTTA
* *
51080679 TATATATATTTTATATATTTTGTAATTTATATACATGTTTATATATC
1 TATATATATTTTATATATTTTGTAATATATATACATGCTTATATATC
* *
51080726 TATATATATTTTCTAT-TTTTATGAATATATATACATGCTTATAT
1 TATATATATTTTATATATTTTGT-AATATATATACATGCTTATAT
51080770 TTTTTAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 5 0.13
47 34 0.87
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.56
Consensus pattern (47 bp):
TATATATATTTTATATATTTTGTAATATATATACATGCTTATATATC
Found at i:51081369 original size:109 final size:107
Alignment explanation
Indices: 51081178--51081489 Score: 466
Period size: 109 Copynumber: 2.9 Consensus size: 107
51081168 GAAAATTTTT
* * *
51081178 CAAAGTAAGGCAATATTTTGTGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTAGGTTTCGA
1 CAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA
*
51081243 TCTTTCTCGTTCGACCAAATAGCTAAATATCCTTTTAATAATTC
66 T-TTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAA-AATTC
* *
51081287 CAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATATGTTGGGTTTCGA
1 CAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA
*
51081352 TTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTT
66 -TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTC
* * * * *
51081395 CAAAATAAGGCAATGTTTTGCGTTTGAAAATTCAAGAAAA-GTGCTCTAATGTGCTGGGTTTTGA
1 CAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA
*
51081459 -TTTCTCGTTGGACCAAATAGCCAAATATCCT
66 TTTTCTCGTTCGACCAAATAGCCAAATATCCT
51081490 CTTATATCTT
Statistics
Matches: 187, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
105 30 0.16
107 20 0.11
108 41 0.22
109 95 0.51
110 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (107 bp):
CAAAGTAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA
TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTC
Found at i:51083272 original size:29 final size:29
Alignment explanation
Indices: 51083240--51083299 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
51083230 TCTTTATAAA
* *
51083240 TTTAAAGGATTAAATTA-ATATTTTATTAT
1 TTTAAAGGATTAAAATATA-ATTTTATCAT
* *
51083269 TTTAACGTATTAAAATATAATTTTATCAT
1 TTTAAAGGATTAAAATATAATTTTATCAT
51083298 TT
1 TT
51083300 ATTAACTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TTTAAAGGATTAAAATATAATTTTATCAT
Found at i:51085247 original size:50 final size:50
Alignment explanation
Indices: 51085193--51085292 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
51085183 ATGTAATTTC
51085193 TAGAGTTCGAATTTGAGTTCTACCTCTTAGAGTGGTGTATGCATAAAATG
1 TAGAGTTCGAATTTGAGTTCTACCTCTTAGAGTGGTGTATGCATAAAATG
51085243 TAGAGTTCGAATTTGAGTTCTACCTCTTAGAGTGGTGTATGCATAAAATG
1 TAGAGTTCGAATTTGAGTTCTACCTCTTAGAGTGGTGTATGCATAAAATG
51085293 ACTTGAGCAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (50 bp):
TAGAGTTCGAATTTGAGTTCTACCTCTTAGAGTGGTGTATGCATAAAATG
Found at i:51089855 original size:50 final size:50
Alignment explanation
Indices: 51089787--51089887 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
51089777 AAATGACTAA
51089787 TACAATTATATTTAACCATATATACCATGTAACCAAGTAATCAACTAACT
1 TACAATTATATTTAACCATATATACCATGTAACCAAGTAATCAACTAACT
*
51089837 TACAATTATGTTTAACCATATATACCATGTAACCAAGTAATCAACTAACT
1 TACAATTATATTTAACCATATATACCATGTAACCAAGTAATCAACTAACT
51089887 T
1 T
51089888 TTATGTCTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.33
Consensus pattern (50 bp):
TACAATTATATTTAACCATATATACCATGTAACCAAGTAATCAACTAACT
Found at i:51092636 original size:5 final size:5
Alignment explanation
Indices: 51092622--51092669 Score: 69
Period size: 5 Copynumber: 9.2 Consensus size: 5
51092612 TTTACTTTAT
*
51092622 ATATA TATATA ATATA ATATA ATATA ATATT ATAATA ATATA ATATA A
1 ATATA -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA A
51092670 CAACATACTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
5 30 0.77
6 9 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:51092647 original size:21 final size:21
Alignment explanation
Indices: 51092620--51092669 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
51092610 CATTTACTTT
51092620 ATATATATATATAATATAATATA
1 ATATA-ATA-ATAATATAATATA
*
51092643 ATATAAT-ATTATAATAATATA
1 ATATAATAATAAT-ATAATATA
51092664 ATATAA
1 ATATAA
51092670 CAACATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 14 0.56
22 2 0.08
23 5 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATATAATAATAATATAATATA
Found at i:51096574 original size:11 final size:11
Alignment explanation
Indices: 51096556--51096593 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
51096546 AGAAACTTTC
51096556 TAATTTCACTTT
1 TAATTTCA-TTT
51096568 T-ATTTCATTT
1 TAATTTCATTT
*
51096578 TAATTTCAATT
1 TAATTTCATTT
51096589 TAATT
1 TAATT
51096594 ACAATTTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 4 0.17
11 19 0.79
12 1 0.04
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (11 bp):
TAATTTCATTT
Found at i:51098769 original size:24 final size:20
Alignment explanation
Indices: 51098714--51098752 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
51098704 CAGGAAAACT
51098714 TGAAAAATTGTAGTTATGAG
1 TGAAAAATTGTAGTTATGAG
51098734 TGAAAAATTGTAGTTATGA
1 TGAAAAATTGTAGTTATGA
51098753 AGATAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (20 bp):
TGAAAAATTGTAGTTATGAG
Found at i:51102152 original size:18 final size:15
Alignment explanation
Indices: 51102107--51102140 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
51102097 ATTCTTCCAG
*
51102107 TTTTCTTCTTCTTCT
1 TTTTCTTTTTCTTCT
51102122 TTTTCTTTTTCTTCT
1 TTTTCTTTTTCTTCT
51102137 TTTT
1 TTTT
51102141 GCTGATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTTTCTTCT
Found at i:51103143 original size:3 final size:3
Alignment explanation
Indices: 51103135--51103164 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
51103125 ATAGTATATG
51103135 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT
51103165 ATTAAGGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
GTT
Found at i:51123368 original size:9 final size:9
Alignment explanation
Indices: 51123354--51123474 Score: 161
Period size: 9 Copynumber: 13.4 Consensus size: 9
51123344 TTTGGTTAAA
51123354 AATTAACCG
1 AATTAACCG
51123363 AATTAACCG
1 AATTAACCG
*
51123372 AATTACCCG
1 AATTAACCG
51123381 AATTAACCG
1 AATTAACCG
51123390 AATTAACCG
1 AATTAACCG
*
51123399 AATTACCCG
1 AATTAACCG
**
51123408 AATTAATTG
1 AATTAACCG
**
51123417 AATTAATTG
1 AATTAACCG
*
51123426 AATTAACTG
1 AATTAACCG
51123435 AATTAACCG
1 AATTAACCG
51123444 AATTAACCG
1 AATTAACCG
*
51123453 AATTACCCG
1 AATTAACCG
*
51123462 AATTAACCT
1 AATTAACCG
51123471 AATT
1 AATT
51123475 GAATCATACA
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 101 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:51123392 original size:27 final size:27
Alignment explanation
Indices: 51123354--51123474 Score: 179
Period size: 27 Copynumber: 4.5 Consensus size: 27
51123344 TTTGGTTAAA
51123354 AATTAACCGAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
51123381 AATTAACCGAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
** ** * *
51123408 AATTAATTGAATTAATTGAATTAACTG
1 AATTAACCGAATTAACCGAATTACCCG
51123435 AATTAACCGAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
*
51123462 AATTAACCTAATT
1 AATTAACCGAATT
51123475 GAATCATACA
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTACCCG
Found at i:51131933 original size:18 final size:19
Alignment explanation
Indices: 51131910--51131950 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
51131900 TTTGAATTTT
*
51131910 TAAATATTAAT-TAAAAAA
1 TAAATATAAATATAAAAAA
51131928 TAAATATAAATAGTAAAAAA
1 TAAATATAAATA-TAAAAAA
51131948 TAA
1 TAA
51131951 TAAACTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
20 10 0.50
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAATATAAATATAAAAAA
Found at i:51133007 original size:20 final size:20
Alignment explanation
Indices: 51132968--51133008 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
51132958 GTTGAATTAG
*
51132968 TTTATTAAATTTTTTATATT
1 TTTATTAAATTTTTAATATT
51132988 TTTATT-AATTTTTAATTATT
1 TTTATTAAATTTTTAA-TATT
51133008 T
1 T
51133009 ATATAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTATTAAATTTTTAATATT
Found at i:51133015 original size:19 final size:18
Alignment explanation
Indices: 51132968--51133016 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
51132958 GTTGAATTAG
51132968 TTTATTAAATTTTTTATATT
1 TTTATT-AA-TTTTTATATT
51132988 TTTATTAATTTTTA-ATT
1 TTTATTAATTTTTATATT
51133005 ATTTATATAATT
1 -TTTAT-TAATT
51133017 ATTGTTGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.11
18 11 0.41
19 7 0.26
20 6 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTATTAATTTTTATATT
Found at i:51134233 original size:45 final size:45
Alignment explanation
Indices: 51134183--51134446 Score: 456
Period size: 45 Copynumber: 5.9 Consensus size: 45
51134173 AAGAGGTGGA
51134183 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
51134228 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
51134273 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
51134318 CAACATCATGCATAATTCATAGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
51134363 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
51134408 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
51134447 CCATGGCCGA
Statistics
Matches: 208, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 208 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:51135080 original size:13 final size:13
Alignment explanation
Indices: 51135062--51135086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51135052 ATGGTTTTGT
51135062 AAAAAAAAAAATC
1 AAAAAAAAAAATC
51135075 AAAAAAAAAAAT
1 AAAAAAAAAAAT
51135087 TTTGCCTACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAATC
Found at i:51140543 original size:45 final size:45
Alignment explanation
Indices: 51140493--51140754 Score: 438
Period size: 45 Copynumber: 5.9 Consensus size: 45
51140483 AAGAGGTGGA
51140493 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
51140538 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
51140583 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
51140628 CAACATCATGCATAATTCATAGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
51140673 CAACATCATGCATAATTCAT-GAAGAATTT-AAGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
51140716 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
51140755 CCATGGCCGA
Statistics
Matches: 205, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
43 30 0.15
44 16 0.08
45 159 0.78
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:51142342 original size:3 final size:3
Alignment explanation
Indices: 51142334--51142380 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
51142324 AGAGCAATTC
*
51142334 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51142381 AATTTGCCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:51157186 original size:31 final size:29
Alignment explanation
Indices: 51157133--51157190 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
51157123 ACATGTGTAT
*
51157133 AATTACACTAAATCAAAGTTTATATATCA
1 AATTACACTAAATCAAAATTTATATATCA
*
51157162 AATTACACAGTAAATTAAAATTTATATAT
1 AATTACAC--TAAATCAAAATTTATATAT
51157191 AATTTTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
31 17 0.68
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.36
Consensus pattern (29 bp):
AATTACACTAAATCAAAATTTATATATCA
Found at i:51157194 original size:29 final size:27
Alignment explanation
Indices: 51157130--51157194 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 27
51157120 GTAACATGTG
*
51157130 TATAATTACACTAAATCAAAGTTTATA
1 TATAATTACACTAAATCAAAATTTATA
*
51157157 TATCAAATTACACAGTAAATTAAAATTTATA
1 TAT--AATTACAC--TAAATCAAAATTTATA
51157188 TATAATT
1 TATAATT
51157195 TTGATATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 3 0.09
29 12 0.38
31 17 0.53
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.38
Consensus pattern (27 bp):
TATAATTACACTAAATCAAAATTTATA
Found at i:51158914 original size:20 final size:21
Alignment explanation
Indices: 51158878--51158916 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
51158868 TAGGCGCCAA
51158878 TGAATAAAATAATAATTTTTT
1 TGAATAAAATAATAATTTTTT
51158899 TGAATAAAAT-ATAATTTT
1 TGAATAAAATAATAATTTT
51158917 ATACTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
TGAATAAAATAATAATTTTTT
Found at i:51159125 original size:22 final size:21
Alignment explanation
Indices: 51159071--51159124 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 21
51159061 AAAACAGAAG
*
51159071 AAAGAAGAAAAGGAGGAAGGA
1 AAAGAAGAAAAGAAGGAAGGA
*
51159092 AGCAGAAGAAAAGAAGGAAGGA
1 A-AAGAAGAAAAGAAGGAAGGA
51159114 AAAGAAGAAAA
1 AAAGAAGAAAA
51159125 AAATTAGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAAGAAGGAAGGA
Found at i:51162498 original size:16 final size:15
Alignment explanation
Indices: 51162467--51162508 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
51162457 ACAAAATCAA
*
51162467 ATAAAATTTAATTAT
1 ATAAAAGTTAATTAT
51162482 ATAAAAGTTACATTAT
1 ATAAAAGTTA-ATTAT
*
51162498 ATAAAAATTAA
1 ATAAAAGTTAA
51162509 ATGAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAGTTAATTAT
Found at i:51162923 original size:27 final size:25
Alignment explanation
Indices: 51162888--51163104 Score: 179
Period size: 22 Copynumber: 8.8 Consensus size: 25
51162878 ATATCCCCAC
*
51162888 ATTATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAA-TA-AAA
*
51162915 ATTACAATATTCAT--ATAA-AAAA
1 ATTACAATATTCATACAAAATAAAA
** *
51162937 ATTGTAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAA-TA-AAA
51162964 ATTACAATATTCATAC-AAA-AAAA
1 ATTACAATATTCATACAAAATAAAA
* *
51162987 A-TATAATATTCATATAAAATTACAAA
1 ATTACAATATTCATACAAAA-TA-AAA
51163013 ATTACAATATTCATAC--AA-AAAA
1 ATTACAATATTCATACAAAATAAAA
* *
51163035 ATTGCAATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAA-TA-AAA
51163062 ATTACAATATTCATAC--AA-AAAA
1 ATTACAATATTCATACAAAATAAAA
* *
51163084 TTTATAATATTCATACAAAAT
1 ATTACAATATTCATACAAAAT
51163105 TATAATGTTC
Statistics
Matches: 153, Mismatches: 19, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
22 61 0.40
23 9 0.06
24 8 0.05
25 8 0.05
26 9 0.06
27 58 0.38
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.33
Consensus pattern (25 bp):
ATTACAATATTCATACAAAATAAAA
Found at i:51162937 original size:22 final size:22
Alignment explanation
Indices: 51162912--51163247 Score: 151
Period size: 22 Copynumber: 15.0 Consensus size: 22
51162902 ACAAAATTAC
51162912 AAAATTACAATATTCATATAAA
1 AAAATTACAATATTCATATAAA
** *
51162934 AAAATTGTAATATTCATACAAAA
1 AAAATTACAATATTCATA-TAAA
*
51162957 TTATAATATTACAATATTCATACAAA
1 --A-AA-ATTACAATATTCATATAAA
* *
51162983 AAAAATATAATATTCATATAAAATTA
1 AAAATTACAATATTCATAT--AA--A
*
51163009 CAAAATTACAATATTCATACAAA
1 -AAAATTACAATATTCATATAAA
* *
51163032 AAAATTGCAATATTCATACAAAA
1 AAAATTACAATATTCATA-TAAA
*
51163055 CTATAATATTACAATATTCATACAAA
1 --A-AA-ATTACAATATTCATATAAA
* * *
51163081 AAATTTATAATATTC--AT-AC
1 AAAATTACAATATTCATATAAA
* * *
51163100 AAAATTATAATGTTCATA-CAA
1 AAAATTACAATATTCATATAAA
* *
51163121 AAAATTACTA-ATCCA-A-AACTA
1 AAAATTACAATATTCATATAA--A
* *
51163142 TAAA-TACAA-ATTTAATTATAAA
1 AAAATTACAATA-TTCA-TATAAA
* *
51163164 ATAATTACAATATTC--AT-AC
1 AAAATTACAATATTCATATAAA
*
51163183 AACATTACAATATTC--ATAAA
1 AAAATTACAATATTCATATAAA
* *
51163203 AAAATTATAATATTCATACAAA
1 AAAATTACAATATTCATATAAA
* * *
51163225 AAATTTAAAATATTCATACAAA
1 AAAATTACAATATTCATATAAA
51163247 A
1 A
51163248 TTCTAATCTA
Statistics
Matches: 241, Mismatches: 44, Indels: 58
0.70 0.13 0.17
Matches are distributed among these distances:
19 32 0.13
20 25 0.10
21 16 0.07
22 84 0.35
23 19 0.08
24 7 0.03
25 4 0.02
26 11 0.05
27 43 0.18
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.32
Consensus pattern (22 bp):
AAAATTACAATATTCATATAAA
Found at i:51162994 original size:30 final size:27
Alignment explanation
Indices: 51162888--51163110 Score: 164
Period size: 27 Copynumber: 9.0 Consensus size: 27
51162878 ATATCCCCAC
* * * *
51162888 ATTATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAAATATAAT
*
51162915 ATTACAATATTCATA-TAAAA-A-AAT
1 ATTACAATATTCATACAAAAATATAAT
*
51162939 -TGT--AATATTCATACAAAATTATAAT
1 AT-TACAATATTCATACAAAAATATAAT
51162964 ATTACAATATTCATACAAAAA-A-AAT
1 ATTACAATATTCATACAAAAATATAAT
* * * *
51162989 A-T--AATATTCATATAAAATTACAAA
1 ATTACAATATTCATACAAAAATATAAT
51163013 ATTACAATATTCATAC--AAA-A-AA-
1 ATTACAATATTCATACAAAAATATAAT
* *
51163035 ATTGCAATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAAATATAAT
51163062 ATTACAATATTCATAC--AAA-A-AAT
1 ATTACAATATTCATACAAAAATATAAT
* *
51163085 -TTATAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAAATATAAT
51163111 GTTCATACAA
Statistics
Matches: 157, Mismatches: 18, Indels: 43
0.72 0.08 0.20
Matches are distributed among these distances:
22 53 0.34
23 10 0.06
24 14 0.09
25 16 0.10
26 10 0.06
27 54 0.34
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.34
Consensus pattern (27 bp):
ATTACAATATTCATACAAAAATATAAT
Found at i:51163010 original size:98 final size:98
Alignment explanation
Indices: 51162890--51163106 Score: 380
Period size: 98 Copynumber: 2.2 Consensus size: 98
51162880 ATCCCCACAT
* *
51162890 TATAATATTCATACAAAATTACAAAATTACAATATTCATATAAAAAAATTGTAATATTCATACAA
1 TATAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAA
*
51162955 AATTATAATATTACAATATTCATACAAAAAAAA
66 AACTATAATATTACAATATTCATACAAAAAAAA
*
51162988 TATAATATTCATATAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAA
1 TATAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAA
**
51163053 AACTATAATATTACAATATTCATACAAAAAATT
66 AACTATAATATTACAATATTCATACAAAAAAAA
51163086 TATAATATTCATACAAAATTA
1 TATAATATTCATACAAAATTA
51163107 TAATGTTCAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 112 1.00
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.33
Consensus pattern (98 bp):
TATAATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAA
AACTATAATATTACAATATTCATACAAAAAAAA
Found at i:51163109 original size:49 final size:49
Alignment explanation
Indices: 51162888--51163110 Score: 338
Period size: 49 Copynumber: 4.6 Consensus size: 49
51162878 ATATCCCCAC
* * *
51162888 ATTATAATATTCATACAAAATTACAAAATTACAATATTCATATAAAAAA
1 ATTATAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
*
51162937 ATTGTAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
1 ATTATAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
* * * *
51162986 AATATAATATTCATATAAAATTACAAAATTACAATATTCATACAAAAAA
1 ATTATAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
** *
51163035 ATTGCAATATTCATACAAAACTATAATATTACAATATTCATACAAAAAA
1 ATTATAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
*
51163084 TTTATAATATTCATACAAAATTATAAT
1 ATTATAATATTCATACAAAATTATAAT
51163111 GTTCATACAA
Statistics
Matches: 154, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 154 1.00
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.34
Consensus pattern (49 bp):
ATTATAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAA
Found at i:51163426 original size:3 final size:3
Alignment explanation
Indices: 51163420--51163463 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
51163410 TTTTCTTTCT
* *
51163420 TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC -TC CTC CTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
51163464 CCTTTCTCTC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TTC
Found at i:51163438 original size:14 final size:14
Alignment explanation
Indices: 51163416--51163464 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
51163406 TTTTTTTTCT
51163416 TTCTT-TCTTCTTC
1 TTCTTCTCTTCTTC
51163429 TTCTTCTCTTCTTC
1 TTCTTCTCTTCTTC
* *
51163443 TTCTTCTCCTCCTC
1 TTCTTCTCTTCTTC
51163457 TTCTTCTC
1 TTCTTCTC
51163465 CTTTCTCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
13 5 0.15
14 28 0.85
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (14 bp):
TTCTTCTCTTCTTC
Found at i:51163440 original size:17 final size:17
Alignment explanation
Indices: 51163416--51163463 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
51163406 TTTTTTTTCT
51163416 TTCT-TTCTTCTTCTTC
1 TTCTCTTCTTCTTCTTC
51163432 TTCTCTTCTTCTTCTTC
1 TTCTCTTCTTCTTCTTC
* *
51163449 TCCTCCTCTTCTTCT
1 TTCTCTTCTTCTTCT
51163464 CCTTTCTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 4 0.14
17 25 0.86
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
TTCTCTTCTTCTTCTTC
Found at i:51163465 original size:11 final size:11
Alignment explanation
Indices: 51163424--51163470 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
51163414 CTTTCTTTCT
*
51163424 TCTTCTTCTTC
1 TCTTCTTCTCC
51163435 TCTTCTTCT--
1 TCTTCTTCTCC
*
51163444 TCTTCTCCTCC
1 TCTTCTTCTCC
51163455 TCTTCTTCTCC
1 TCTTCTTCTCC
51163466 T-TTCT
1 TCTTCT
51163471 CTCTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 8 0.25
10 4 0.12
11 20 0.62
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (11 bp):
TCTTCTTCTCC
Found at i:51163474 original size:17 final size:16
Alignment explanation
Indices: 51163418--51163475 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
51163408 TTTTTTCTTT
*
51163418 CTTTCTTCTTCTTCTT
1 CTTTCTTCTTCTTCTC
51163434 CTCTTCTTCTTCTTCTC
1 CT-TTCTTCTTCTTCTC
*
51163451 C--TCCTCTTCTTCTC
1 CTTTCTTCTTCTTCTC
51163465 CTTTCTCTCTT
1 CTTTCT-TCTT
51163476 TTTTTTTCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
14 13 0.37
16 4 0.11
17 18 0.51
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (16 bp):
CTTTCTTCTTCTTCTC
Found at i:51163475 original size:14 final size:13
Alignment explanation
Indices: 51163426--51163475 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
51163416 TTCTTTCTTC
*
51163426 TTCTTCTTCTCTT
1 TTCTTCTTCTCCT
51163439 CTTCTTCTTCTCCT
1 -TTCTTCTTCTCCT
*
51163453 CCTCTTCTTCTCCT
1 -TTCTTCTTCTCCT
51163467 TTCTCTCTT
1 TTCT-TCTT
51163476 TTTTTTTCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
13 3 0.09
14 29 0.91
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (13 bp):
TTCTTCTTCTCCT
Found at i:51163664 original size:5 final size:5
Alignment explanation
Indices: 51163654--51163681 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
51163644 GACAGGCGCC
51163654 ACCCG ACCCG ACCCG ACCCG ACCCG ACC
1 ACCCG ACCCG ACCCG ACCCG ACCCG ACC
51163682 GTATTTTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.61, G:0.18, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:51169070 original size:21 final size:21
Alignment explanation
Indices: 51169030--51169070 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51169020 TTTATATATT
* **
51169030 TTTAGATTTTTTTTTGAAAAA
1 TTTAGAATTTTTTTAAAAAAA
51169051 TTTAGAATTTTTTTAAAAAA
1 TTTAGAATTTTTTTAAAAAA
51169071 TATATAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (21 bp):
TTTAGAATTTTTTTAAAAAAA
Found at i:51171267 original size:21 final size:21
Alignment explanation
Indices: 51171085--51171273 Score: 81
Period size: 21 Copynumber: 9.0 Consensus size: 21
51171075 TGAATAAAAG
* *
51171085 CTCATGAGAGCTAAACAAAAA
1 CTCATAAGAGCTAAACAGAAA
* * * * * *
51171106 CCCACAAGGGTTGAACAGAAG
1 CTCATAAGAGCTAAACAGAAA
** * * *
51171127 CTTGTAAAAGCTGAACGGAAA
1 CTCATAAGAGCTAAACAGAAA
* * * * *
51171148 CCCATAAGGGTTAAATAGAAG
1 CTCATAAGAGCTAAACAGAAA
* * *
51171169 CTCAAAAGAGCTGAACGGAAA
1 CTCATAAGAGCTAAACAGAAA
* * * *
51171190 CCCATAAGGGTTAAACAGAAG
1 CTCATAAGAGCTAAACAGAAA
* *
51171211 CTCAAAAGAGCTAAACGGAAA
1 CTCATAAGAGCTAAACAGAAA
* * *
51171232 CTCATATGAGTTAAACAGAAT
1 CTCATAAGAGCTAAACAGAAA
** *
51171253 CTTGTAAGAGCTAAATAGAAA
1 CTCATAAGAGCTAAACAGAAA
51171274 GGAAAACATG
Statistics
Matches: 109, Mismatches: 59, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
21 109 1.00
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (21 bp):
CTCATAAGAGCTAAACAGAAA
Found at i:51171267 original size:42 final size:42
Alignment explanation
Indices: 51171082--51171251 Score: 198
Period size: 42 Copynumber: 4.0 Consensus size: 42
51171072 AGCTGAATAA
** ** * *
51171082 AAGCTCATGAGAGCTAAACAAAAACCCACAAGGGTTGAACAG
1 AAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAACAG
** * *
51171124 AAGCTTGTAAA-AGCTGAACGGAAACCCATAAGGGTTAAATAG
1 AAGC-TCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAACAG
*
51171166 AAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTAAACAG
1 AAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAACAG
* * *
51171208 AAGCTCAAAAGAGCTAAACGGAAACTCATATGAGTTAAACAG
1 AAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAACAG
51171250 AA
1 AA
51171252 TCTTGTAAGA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 4 0.04
42 103 0.94
43 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.15
Consensus pattern (42 bp):
AAGCTCAAAAGAGCTAAACGGAAACCCATAAGGGTTAAACAG
Found at i:51172455 original size:17 final size:17
Alignment explanation
Indices: 51172433--51172471 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
51172423 TTCTTTCTTC
51172433 TAAATAAAAAA-ATTAAA
1 TAAATAAAAAATA-TAAA
*
51172450 TAAATATAAAATATAAA
1 TAAATAAAAAATATAAA
51172467 TAAAT
1 TAAAT
51172472 GTCAAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAATAAAAAATATAAA
Found at i:51185022 original size:29 final size:28
Alignment explanation
Indices: 51184989--51185068 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 28
51184979 TTTTTAAAAA
51184989 AAATATTTATATTATTTGAATTTAATATT
1 AAATATTTATATTATTT-AATTTAATATT
51185018 AAATAATTTA-A-TA-TT--TTT-A-ATT
1 AAAT-ATTTATATTATTTAATTTAATATT
*
51185040 AAAAATTTATATATATTTAATTTAATATT
1 AAATATTTATAT-TATTTAATTTAATATT
51185069 TTTTAATGTC
Statistics
Matches: 41, Mismatches: 1, Indels: 18
0.68 0.02 0.30
Matches are distributed among these distances:
21 5 0.12
22 7 0.17
23 1 0.02
24 5 0.12
25 2 0.05
27 5 0.12
28 3 0.07
29 8 0.20
30 5 0.12
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (28 bp):
AAATATTTATATTATTTAATTTAATATT
Found at i:51185040 original size:22 final size:23
Alignment explanation
Indices: 51185015--51185066 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
51185005 TGAATTTAAT
*
51185015 ATTAAATAATTTA-ATATTTTTA
1 ATTAAATAATTTATATATATTTA
51185037 ATTAAA-AATTTATATATATTTA
1 ATTAAATAATTTATATATATTTA
*
51185059 ATTTAATA
1 ATTAAATA
51185067 TTTTTTAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 19 0.73
23 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTAAATAATTTATATATATTTA
Found at i:51185162 original size:15 final size:17
Alignment explanation
Indices: 51185130--51185169 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
51185120 TATGTGTTAT
51185130 AAATTACATAATATATA
1 AAATTACATAATATATA
*
51185147 AAATTACATAATATAAA
1 AAATTACATAATATATA
51185164 AAATTA
1 AAATTA
51185170 TAAACTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATTACATAATATATA
Found at i:51193207 original size:28 final size:30
Alignment explanation
Indices: 51193176--51193269 Score: 79
Period size: 34 Copynumber: 3.1 Consensus size: 30
51193166 TTGTATTTAG
51193176 AATAAAAATTTAAATTATATTTATATTAAAT
1 AATAAAAATTTAAATTATATTTATATT-AAT
*
51193207 AATAAAATATATTTAAATTAT-TTTGTATT-A-
1 AAT-AAA-A-ATTTAAATTATATTTATATTAAT
* * **
51193237 AA-AAAATTTTAAAATATATTTATGCTAAT
1 AATAAAAATTTAAATTATATTTATATTAAT
51193266 AATA
1 AATA
51193270 TTTTTCTCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
26 9 0.18
27 6 0.12
28 4 0.08
29 2 0.04
30 3 0.06
31 4 0.08
32 3 0.06
33 8 0.16
34 11 0.22
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (30 bp):
AATAAAAATTTAAATTATATTTATATTAAT
Found at i:51193318 original size:19 final size:20
Alignment explanation
Indices: 51193291--51193331 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
51193281 AAAAATTATA
51193291 TAATATTTTTTAAATATATT
1 TAATATTTTTTAAATATATT
*
51193311 TAAT-TTTTTTAATTATATT
1 TAATATTTTTTAAATATATT
51193330 TA
1 TA
51193332 TATCATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TAATATTTTTTAAATATATT
Found at i:51201972 original size:24 final size:24
Alignment explanation
Indices: 51201937--51201990 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
51201927 ATAAAGTTAC
* *
51201937 AATTGTCA-ATTGAGTTTCAGCTT
1 AATTGGCAGATTGAGTTTCAACTT
*
51201960 GATTGGCAGATTGAGTTTCAACTT
1 AATTGGCAGATTGAGTTTCAACTT
51201984 AATTGGC
1 AATTGGC
51201991 TTGGACATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (24 bp):
AATTGGCAGATTGAGTTTCAACTT
Found at i:51203444 original size:32 final size:32
Alignment explanation
Indices: 51203407--51203562 Score: 186
Period size: 32 Copynumber: 4.9 Consensus size: 32
51203397 CATGTTTTAT
* *
51203407 ATATTGCCGAATTGAATTGTATAGGTATAGAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* ** *
51203439 CTATTGTTGAATTGAATTGTATATATATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* * * **
51203471 CTATTGCTGAAATGAATTGTATATGTATACTT
1 ATATTGCCGAATTGAATTGTATATGTATACAC
* *
51203503 ATATTGCCGAATTTAATTGTATAGGTATACAC
1 ATATTGCCGAATTGAATTGTATATGTATACAC
*
51203535 ATATTGCCGAATTGATTTGTATATGTAT
1 ATATTGCCGAATTGAATTGTATATGTAT
51203563 TTATGTATTG
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 103 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.41
Consensus pattern (32 bp):
ATATTGCCGAATTGAATTGTATATGTATACAC
Found at i:51206329 original size:20 final size:22
Alignment explanation
Indices: 51206282--51206330 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
51206272 GGCATATTTA
51206282 TTAAAATAATTATACATAAAAT
1 TTAAAATAATTATACATAAAAT
** *
51206304 AAAAAATAATTA-ATAT-AAAT
1 TTAAAATAATTATACATAAAAT
51206324 TTAAAAT
1 TTAAAAT
51206331 TGAACTTAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 9 0.41
21 3 0.14
22 10 0.45
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TTAAAATAATTATACATAAAAT
Found at i:51210066 original size:17 final size:17
Alignment explanation
Indices: 51210041--51210087 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
51210031 AAATTTTGGA
*
51210041 TTTTT-ATTTTTATTAT
1 TTTTTAATTTTTATAAT
51210057 TTTTTAATTTTT-TAAT
1 TTTTTAATTTTTATAAT
51210073 TTTTCTAGATTTTTA
1 TTTT-TA-ATTTTTA
51210088 AATGAGGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTTAATTTTTATAAT
Found at i:51210276 original size:23 final size:23
Alignment explanation
Indices: 51210248--51210292 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
51210238 ATCTTTAAAA
*
51210248 TTTATACATATTTGATAAAAGAG
1 TTTATACATATTTAATAAAAGAG
*
51210271 TTTATATATATTTAATAAAAGA
1 TTTATACATATTTAATAAAAGA
51210293 ACATGTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (23 bp):
TTTATACATATTTAATAAAAGAG
Found at i:51220942 original size:43 final size:43
Alignment explanation
Indices: 51220832--51220995 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
51220822 TTTCTGATAA
*
51220832 GTATTTTCATGTAAGACCACGTCTGGGACGATGGAATCGATTT
1 GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT
* ** * *
51220875 ATATTTTTGTGTAAAACAACGTCTGGGACGATGGCATCGATTT
1 GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT
** *
51220918 GTATTTTCGA-GTAAGACCTTGTCTGGGA-TAGTGGCATCGATTT
1 GTATTTTC-ATGTAAGACCACGTCTGGGACGA-TGGCATCGATTT
* * ** *
51220961 GCGA-TTACATGTAAGACCGTGTCTAGGACGATGGC
1 G-TATTTTCATGTAAGACCACGTCTGGGACGATGGC
51220996 GTTGTATGAA
Statistics
Matches: 97, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 93 0.96
44 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT
Found at i:51227306 original size:25 final size:25
Alignment explanation
Indices: 51227272--51227326 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
51227262 TTTCTGAATA
51227272 TGTTTAAGTGCCAAAGTCACTTCTT
1 TGTTTAAGTGCCAAAGTCACTTCTT
51227297 TGTTTAAGTGCCAAAGTCACTTCTT
1 TGTTTAAGTGCCAAAGTCACTTCTT
51227322 TGTTT
1 TGTTT
51227327 GTACATTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (25 bp):
TGTTTAAGTGCCAAAGTCACTTCTT
Found at i:51229341 original size:20 final size:20
Alignment explanation
Indices: 51229316--51229355 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51229306 AATATTTTCC
*
51229316 AGTAAACCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
* *
51229336 AGTAAAATATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
51229356 TCATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:51229370 original size:34 final size:35
Alignment explanation
Indices: 51229304--51229370 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
51229294 CAAACACCAG
51229304 AAAATATTTTCCAGTAAACCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAACCATTTTACAGAAAAGT
* *
51229339 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAACCATTTTACAGAAAA
51229371 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAACCATTTTACAGAAAAGT
Found at i:51236231 original size:23 final size:23
Alignment explanation
Indices: 51236205--51236302 Score: 171
Period size: 23 Copynumber: 4.3 Consensus size: 23
51236195 ATAAGTGCCA
51236205 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
51236228 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
51236251 CACTGA-ATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
51236273 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
51236296 CACTGAT
1 CACTGAT
51236303 CAATAACACT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
22 21 0.30
23 50 0.70
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:51236270 original size:45 final size:46
Alignment explanation
Indices: 51236205--51236302 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 46
51236195 ATAAGTGCCA
* *
51236205 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
51236251 CACTGA-ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
51236296 CACTGAT
1 CACTGAT
51236303 CAATAACACT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 43 0.88
46 6 0.12
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (46 bp):
CACTGATATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
Found at i:51237963 original size:38 final size:39
Alignment explanation
Indices: 51237857--51237973 Score: 200
Period size: 39 Copynumber: 3.0 Consensus size: 39
51237847 ATCCAACCAA
51237857 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
*
51237896 ACCCAATTACCCAAGCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
* *
51237935 ACCCAATTA-CCAACCCAATAAAAATAAAACTAGAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
51237973 A
1 A
51237974 ACTCTTAAGT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 27 0.36
39 47 0.64
ACGTcount: A:0.50, C:0.28, G:0.04, T:0.18
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:51240853 original size:24 final size:24
Alignment explanation
Indices: 51240811--51240861 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
51240801 AATCAAAGTC
** *
51240811 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
51240835 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
51240859 AAA
1 AAA
51240862 CATCCTAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:51241425 original size:24 final size:24
Alignment explanation
Indices: 51241383--51241433 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
51241373 AATCAAAGTC
** *
51241383 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
51241407 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
51241431 AAA
1 AAA
51241434 CATCCTAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:51241827 original size:572 final size:572
Alignment explanation
Indices: 51240744--51242459 Score: 3371
Period size: 572 Copynumber: 3.0 Consensus size: 572
51240734 TTGAATTCGA
51240744 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
1 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
51240809 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
66 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
51240874 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
131 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
51240939 AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
196 AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
*
51241004 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACTTAGTTATAGGAAGT
261 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
51241069 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
326 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
51241134 AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
391 AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
51241199 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
456 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
51241264 TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
521 TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
51241316 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
1 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
*
51241381 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAA
66 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
51241446 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
131 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
* *
51241511 AATCTCCACCTTGACATAAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCTCGTAA
196 AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
51241576 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
261 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
51241641 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
326 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
51241706 AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
391 AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
51241771 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
456 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
51241836 TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
521 TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
51241888 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
1 ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
51241953 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
66 TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
51242018 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
131 AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
51242083 AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
196 AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
51242148 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
261 GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
*
51242213 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAATAATATCACCACG
326 GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
51242278 AGCAAGAATATCACG-AAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
391 AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
51242342 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
456 GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
*
51242407 TGAGTTCACTAAATAGTCCCATAAACCAAATAGCTTCTTTACAAGCCCAAGT
521 TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
51242459 A
1 A
51242460 ATCGTCATGT
Statistics
Matches: 1135, Mismatches: 9, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
571 166 0.15
572 969 0.85
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.33
Consensus pattern (572 bp):
ATGAATTTAAGAGAAGTTTCGACTACATCTTTTTATAGGTTGAAAAAACCTAATTCTAATCAAAG
TCAAATATATTATGTTAATAAATGCTAAATATATTATACTCATAAATACTAAACATCCTAGAAAG
AAGATATATTTTGTTTAACTTGACTTGCAAGCAATCTCTTAGAATTTGGGTCACACAACTCTAAC
AATCTCCACCTTGACATGAATTCTCAATGAACAAGTTTTTTTACCTCTTCCATAAAACCCCGTAA
GGGTTTAACTTCAACAATGAACACCAACCAAGTCTAAGCAATATTCAAACCTAGTTATAGGAAGT
GGCTTAGTCATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCACG
AGCAAGAATATCACGAAAAAAATGATACCTAACATTAATATGTTTTGTTCTCTCATGAAACATTT
GATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAAAATTTATATTGATTTGAAGGTCTTCAT
TGAGTTCACTAAATAGTCCCATCAACCAAATAGCTTCTTTACAAGCCCAAGT
Found at i:51241997 original size:24 final size:24
Alignment explanation
Indices: 51241955--51242005 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
51241945 AATCAAAGTC
** *
51241955 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
51241979 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
51242003 AAA
1 AAA
51242006 CATCCTAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:51244012 original size:8 final size:8
Alignment explanation
Indices: 51243960--51244014 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
51243950 TTTTTTGAAG
51243960 TATATTAT
1 TATATTAT
*
51243968 TATTTTAT
1 TATATTAT
*
51243976 TATATT-G
1 TATATTAT
*
51243983 TAAATTATAT
1 TATA-T-TAT
51243993 TATATTAT
1 TATATTAT
51244001 TATATTAT
1 TATATTAT
51244009 TATATT
1 TATATT
51244015 TTAAATAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 3 0.08
8 30 0.79
9 2 0.05
10 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:51244243 original size:17 final size:17
Alignment explanation
Indices: 51244221--51244259 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
51244211 ACAGAGAAGG
* *
51244221 AAAGAAGGAAGGAAAGA
1 AAAGAAAGAAAGAAAGA
51244238 AAAGAAAGAAAGAAAGA
1 AAAGAAAGAAAGAAAGA
51244255 AAAGA
1 AAAGA
51244260 GAAAATTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAAGAAAGA
Found at i:51245054 original size:45 final size:45
Alignment explanation
Indices: 51244989--51245138 Score: 212
Period size: 45 Copynumber: 3.3 Consensus size: 45
51244979 ATGTGCCAAC
* * *
51244989 TACTGTTACTGTTACTGATTCGACACTTTGTGTGCCGAATACTAT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
* * *
51245034 TACTGTTACTGGTACCGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
*
51245079 TACTGTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGT
*
51245124 TACTGTTACTATTAC
1 TACTGTTACTGTTAC
51245139 TGCTACCGTT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
Found at i:51245149 original size:18 final size:19
Alignment explanation
Indices: 51245118--51245156 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
51245108 GTGTGTTGAA
* *
51245118 TACTGTTACTGTTACT-AT
1 TACTGCTACCGTTACTGAT
51245136 TACTGCTACCGTTACTGAT
1 TACTGCTACCGTTACTGAT
51245155 TA
1 TA
51245157 ATGTTTACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (19 bp):
TACTGCTACCGTTACTGAT
Found at i:51249619 original size:24 final size:24
Alignment explanation
Indices: 51249569--51249620 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
51249559 AACCAAAGTC
** **
51249569 AAATATATTATGTTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
51249593 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
51249617 AAAT
1 AAAT
51249621 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:51254179 original size:48 final size:51
Alignment explanation
Indices: 51254118--51254248 Score: 146
Period size: 52 Copynumber: 2.6 Consensus size: 51
51254108 AAAAATTTAA
* * *
51254118 AAATAAATGATAAATATTTTACATAT-T-TTT-AAAATGATTTTTGGGTAC
1 AAATAAATAATAAATATTTAAAATATATATTTGAAAATGATTTTTGGGTAC
* **
51254166 AAATAAATAATAAATAATTTAAAATATATATTTGAAAATTATTTTTTTGTAC
1 AAATAAATAATAAAT-ATTTAAAATATATATTTGAAAATGATTTTTGGGTAC
*
51254218 AAATAAAAAATAAA-ATTTAAAAT-TAATATTT
1 AAATAAATAATAAATATTTAAAATAT-ATATTT
51254249 TTGATACCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 14 0.20
49 10 0.14
50 16 0.23
51 3 0.04
52 28 0.39
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.42
Consensus pattern (51 bp):
AAATAAATAATAAATATTTAAAATATATATTTGAAAATGATTTTTGGGTAC
Found at i:51257137 original size:5 final size:6
Alignment explanation
Indices: 51257115--51257144 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
51257105 CTATTTACAG
51257115 AAAAAT GAAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAA
51257145 CAAATCGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:51268910 original size:21 final size:22
Alignment explanation
Indices: 51268886--51268926 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
51268876 TGGTGCACTG
*
51268886 ATAA-TGTATTCTTTTTATTCC
1 ATAATTGTACTCTTTTTATTCC
51268907 ATAATTGTACTCTTTTTATT
1 ATAATTGTACTCTTTTTATT
51268927 TCGTAAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.12, G:0.05, T:0.59
Consensus pattern (22 bp):
ATAATTGTACTCTTTTTATTCC
Found at i:51268987 original size:14 final size:16
Alignment explanation
Indices: 51268963--51268994 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
51268953 GCGTCTCTCT
51268963 TTTTTTAAATATT-TA
1 TTTTTTAAATATTATA
51268978 TTTTTT-AATATTATA
1 TTTTTTAAATATTATA
51268993 TT
1 TT
51268995 ATACCTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTTAAATATTATA
Found at i:51273692 original size:3 final size:3
Alignment explanation
Indices: 51273684--51273709 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51273674 AAACCAACCT
51273684 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
51273710 ATGAGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51274937 original size:27 final size:26
Alignment explanation
Indices: 51274886--51274937 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
51274876 CTGATCGATT
*
51274886 TTGATTTGATATATTCTTAATTTAAG
1 TTGATTTGATATATTCTTAAGTTAAG
*
51274912 TTGATATTGATATGATT-TTCAGTTAA
1 TTGAT-TTGATAT-ATTCTTAAGTTAA
51274938 ATGTTTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 14 0.64
28 3 0.14
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.52
Consensus pattern (26 bp):
TTGATTTGATATATTCTTAAGTTAAG
Found at i:51286401 original size:30 final size:29
Alignment explanation
Indices: 51286366--51286434 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
51286356 AAAATAACAG
*
51286366 TTTAAAAATCTTATATAAGATATAAAATA-T
1 TTTAAAAATC-TATATAA-ATATAAAAAAGT
* *
51286396 TTTAAAATATCTGTATAAATTTAAAAAAGT
1 TTTAAAA-ATCTATATAAATATAAAAAAGT
51286426 TTTAAAAAT
1 TTTAAAAAT
51286435 ATAAAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 10 0.29
30 21 0.62
31 3 0.09
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (29 bp):
TTTAAAAATCTATATAAATATAAAAAAGT
Found at i:51293890 original size:30 final size:30
Alignment explanation
Indices: 51293855--51293916 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
51293845 TCTCTTCTTG
51293855 ATGTAGTAAGGTATGTTTAAATTAAGATAC
1 ATGTAGTAAGGTATGTTTAAATTAAGATAC
51293885 ATGTAGTAAGGTATGTTTAAATTAAGATAC
1 ATGTAGTAAGGTATGTTTAAATTAAGATAC
51293915 AT
1 AT
51293917 AGTGTATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.37
Consensus pattern (30 bp):
ATGTAGTAAGGTATGTTTAAATTAAGATAC
Found at i:51293923 original size:25 final size:27
Alignment explanation
Indices: 51293865--51293924 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 27
51293855 ATGTAGTAAG
51293865 GTATGTTTAAATTAAGATACATGTAGTAA
1 GTATGTTTAAATTAAGATACA-GTAGT-A
51293894 GGTATGTTTAAATTAAGATACA-TAGT-
1 -GTATGTTTAAATTAAGATACAGTAGTA
51293920 GTATG
1 GTATG
51293925 CTTTGACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
25 5 0.17
28 4 0.13
30 21 0.70
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATGTTTAAATTAAGATACAGTAGTA
Found at i:51300699 original size:18 final size:18
Alignment explanation
Indices: 51300676--51300718 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
51300666 GTTCAATGTG
51300676 TAATTAATTTAAATTT-TT
1 TAATTAA-TTAAATTTATT
51300694 TAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
51300712 TAATTAA
1 TAATTAA
51300719 AAACCTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:51301737 original size:25 final size:25
Alignment explanation
Indices: 51301700--51301751 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
51301690 ACTATTTCAC
* *
51301700 TATTATATTACTACTATTTTGTTGT
1 TATTATATAACTACTATTTTATTGT
* *
51301725 TATTGTATAACTATTATTTTATTGT
1 TATTATATAACTACTATTTTATTGT
51301750 TA
1 TA
51301752 ATTTTCCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (25 bp):
TATTATATAACTACTATTTTATTGT
Found at i:51303479 original size:28 final size:29
Alignment explanation
Indices: 51303437--51303500 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
51303427 TATTTATAAT
51303437 TTTTTAAAAAAT-AAAT-TAATTTATATCA
1 TTTTTAAAAAATAAAATATAATTT-TATCA
*
51303465 TTTTTAAAAATTAAAATATAATTTTATCA
1 TTTTTAAAAAATAAAATATAATTTTATCA
*
51303494 TTATTAA
1 TTTTTAA
51303501 TCTAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 11 0.34
29 15 0.47
30 6 0.19
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTTTAAAAAATAAAATATAATTTTATCA
Found at i:51304804 original size:28 final size:28
Alignment explanation
Indices: 51304772--51304831 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
51304762 AAATTATTTT
51304772 AAAAATATTTTAAAATTAAAAAATTAAA
1 AAAAATATTTTAAAATTAAAAAATTAAA
*
51304800 AAAAATATTTTAAAATTAAAAAATTTAA
1 AAAAATATTTTAAAATTAAAAAATTAAA
51304828 AAAA
1 AAAA
51304832 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (28 bp):
AAAAATATTTTAAAATTAAAAAATTAAA
Found at i:51304809 original size:39 final size:39
Alignment explanation
Indices: 51304736--51304913 Score: 159
Period size: 37 Copynumber: 4.6 Consensus size: 39
51304726 GGCCCATTTT
* *
51304736 TATTTTAAAAATTAAAAAACTTTAAAAAATTATTTTAAAAA
1 TATTTT-AAAATTAAAAAA-TTAAAAAAAATATTTTAAAAA
51304777 TATTTTAAAATTAAAAAATTAAAAAAAATATTTT--AAA
1 TATTTTAAAATTAAAAAATTAAAAAAAATATTTTAAAAA
** * *
51304814 -ATTAAAAAATTTAAAAAATTTAAAAAAATATTTTAAAAT
1 TATTTTAAAA-TTAAAAAATTAAAAAAAATATTTTAAAAA
*** * ** *
51304853 TA-AAAAAAATT-AAAAAGTATGTAAAAATATTTAAAAAA
1 TATTTTAAAATTAAAAAATTA-AAAAAAATATTTTAAAAA
*
51304891 TATTTTAAAATTAAAAAAATAAA
1 TATTTTAAAATTAAAAAATTAAA
51304914 TATATTTATT
Statistics
Matches: 111, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
36 7 0.06
37 32 0.29
38 18 0.16
39 28 0.25
40 20 0.18
41 6 0.05
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (39 bp):
TATTTTAAAATTAAAAAATTAAAAAAAATATTTTAAAAA
Found at i:51304816 original size:20 final size:20
Alignment explanation
Indices: 51304791--51304862 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
51304781 TTAAAATTAA
51304791 AAAATTAAAAAAAATATTTT
1 AAAATTAAAAAAAATATTTT
**
51304811 AAAATT--AAAAAAT-TTAA
1 AAAATTAAAAAAAATATTTT
*
51304828 AAAATTTAAAAAAATATTTT
1 AAAATTAAAAAAAATATTTT
51304848 AAAATTAAAAAAAAT
1 AAAATTAAAAAAAAT
51304863 TAAAAAGTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 8 0.18
18 7 0.16
19 7 0.16
20 22 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAATTAAAAAAAATATTTT
Found at i:51304879 original size:28 final size:29
Alignment explanation
Indices: 51304818--51304880 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
51304808 TTTAAAATTA
* * *
51304818 AAAAATTTAAAAAATTTAAAAAAATATTT
1 AAAAATTAAAAAAAATTAAAAAAATATGT
* *
51304847 TAAAATTAAAAAAAATT-AAAAAGTATGT
1 AAAAATTAAAAAAAATTAAAAAAATATGT
51304875 AAAAAT
1 AAAAAT
51304881 ATTTAAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
28 14 0.50
29 14 0.50
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (29 bp):
AAAAATTAAAAAAAATTAAAAAAATATGT
Found at i:51304886 original size:37 final size:37
Alignment explanation
Indices: 51304742--51304889 Score: 145
Period size: 38 Copynumber: 3.9 Consensus size: 37
51304732 TTTTTATTTT
* * **
51304742 AAAAATTAAAAAACTTTAAAAAATTATTTTAAAAATATTT
1 AAAAATTAAAAAA-TATAAAAAAATATTTT-AAAAT-TAA
*
51304782 TAAAATTAAAAAAT-TAAAAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAATAT-AAAAAAATATTTTAAAATTAA
* *
51304819 AAAATTTAAAAAATTTAAAAAAATATTTTAAAATTAAA
1 AAAAATTAAAAAATATAAAAAAATATTTTAAAATT-AA
* ** *
51304857 AAAAATTAAAAAGTATGTAAAAATATTTAAAAA
1 AAAAATTAAAAAATATAAAAAAATATTTTAAAA
51304890 ATATTTTAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
37 32 0.34
38 36 0.39
39 13 0.14
40 12 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (37 bp):
AAAAATTAAAAAATATAAAAAAATATTTTAAAATTAA
Found at i:51304894 original size:49 final size:47
Alignment explanation
Indices: 51304811--51304909 Score: 155
Period size: 49 Copynumber: 2.1 Consensus size: 47
51304801 AAAATATTTT
*
51304811 AAAATTAAAAAATTTAAAAAATTTAAAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAATGTAAAAAATTTAAAAAAATATTTTAAAATTAAAA
51304858 AAAATTAAAAAGTATGTAAAAATATTT-AAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAA--ATGTAAAAA-ATTTAAAAAAATATTTTAAAATTAAAA
51304907 AAA
1 AAA
51304910 TAAATATATT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
47 11 0.23
49 33 0.69
50 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (47 bp):
AAAATTAAAAAATGTAAAAAATTTAAAAAAATATTTTAAAATTAAAA
Found at i:51305263 original size:16 final size:16
Alignment explanation
Indices: 51305242--51305276 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51305232 ATAAAAAAGA
51305242 AAAATGTTATTATTTT
1 AAAATGTTATTATTTT
*
51305258 AAAATGTTGTTATTTT
1 AAAATGTTATTATTTT
51305274 AAA
1 AAA
51305277 CGATTGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (16 bp):
AAAATGTTATTATTTT
Done.