Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 177 of 196
Found at i:51641831 original size:26 final size:26
Alignment explanation
Indices: 51641778--51641832 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
51641768 GTGGATTTAG
***
51641778 GTGTAATTGCTTGTAATTGAATTTGA
1 GTGTAATTGCTTGTAATTGAACAAGA
51641804 GTGTAATTGCTTGTAATT-ACACAAGA
1 GTGTAATTGCTTGTAATTGA-ACAAGA
51641830 GTG
1 GTG
51641833 GCTTGTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (26 bp):
GTGTAATTGCTTGTAATTGAACAAGA
Found at i:51655468 original size:18 final size:20
Alignment explanation
Indices: 51655441--51655478 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
51655431 TTCAGCTTAA
*
51655441 AATTTTAATT-TTAA-TTTT
1 AATTTGAATTCTTAACTTTT
51655459 AATTTGAATTCTTAACTTTT
1 AATTTGAATTCTTAACTTTT
51655479 GAACTGTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (20 bp):
AATTTGAATTCTTAACTTTT
Found at i:51655697 original size:77 final size:77
Alignment explanation
Indices: 51655570--51655723 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
51655560 CTACTTATTT
51655570 ACCCTTTCTAGATTATAATCTCATTTTTGAATTTTCTCCTTTTAATTTTTGCAAAATGTTTTAAT
1 ACCCTTTCTAGATTATAATCTCATTTTTGAATTTTCTCCTTTTAATTTTTGCAAAATGTTTTAAT
51655635 TATTTAATTTTA
66 TATTTAATTTTA
51655647 ACCCTTTCTAGATTATAATCTCATTTTTGAATTTTCTCCTTTTAATTTTTGCAAAATGTTTTAAT
1 ACCCTTTCTAGATTATAATCTCATTTTTGAATTTTCTCCTTTTAATTTTTGCAAAATGTTTTAAT
51655712 TATTTAATTTTA
66 TATTTAATTTTA
51655724 TAAATTATTT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.27, C:0.13, G:0.05, T:0.55
Consensus pattern (77 bp):
ACCCTTTCTAGATTATAATCTCATTTTTGAATTTTCTCCTTTTAATTTTTGCAAAATGTTTTAAT
TATTTAATTTTA
Found at i:51656065 original size:83 final size:81
Alignment explanation
Indices: 51655959--51656326 Score: 337
Period size: 83 Copynumber: 4.6 Consensus size: 81
51655949 TCATATATGT
* ** * * *
51655959 TTTTTTTTATTATAATATGGAGAATATTAACTGATAAAATTTGTTAATTTCGTTAGTGACGTGTG
1 TTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACATGTG
51656024 AGCAATCATCAAATAAAA
66 AGCAATCATC-AA-AAAA
*
51656042 TTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGGCATGTG
1 TTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACATGTG
* *
51656107 AGCGATCATCAAAGAA
66 AGCAATCATCAAAAAA
* * * * *
51656123 --TTTTTTATT--ATTAAAGAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTTACGTGTG
1 TTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACATGTG
* * *
51656184 AGCTATCAT-TAAAGA
66 AGCAATCATCAAAAAA
* ** * * * *
51656199 TGTCATTTATTATAATAATA-A-AATATTACCTGATAAAATTCGCTAATTTCGTT-GATGACAT-
1 TTTTTTTTATTACAATAA-AGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAG-TGACATG
*
51656260 TGAG-AGATCATTAAAGAAA
64 TGAGCA-ATCATCAAA-AAA
* * *
51656279 TTTTTTATTATGACAA-AAA-AAAATACTAACTAATAAAATTCGTTAATT
1 TTTTTT-TTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATT
51656327 GATTAGTGAT
Statistics
Matches: 233, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
76 3 0.01
77 54 0.23
78 17 0.07
79 44 0.19
80 35 0.15
81 11 0.05
82 2 0.01
83 67 0.29
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.39
Consensus pattern (81 bp):
TTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACATGTG
AGCAATCATCAAAAAA
Found at i:51656149 original size:160 final size:158
Alignment explanation
Indices: 51655961--51656335 Score: 388
Period size: 156 Copynumber: 2.4 Consensus size: 158
51655951 ATATATGTTT
* * * *
51655961 TTTTTTATTA-TAATATGGAGAATATTAACTGATAAAATTTGTTAATTTCGTTAGTGACGTGTGA
1 TTTTTTATTATTAATA-GGAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTGACGTGTGA
* ** *
51656025 GCAATCATCAAATAAA-ATTTTTTTTATTACAATAA-AGAGAATATTAACTAATAAAATTCGTTA
65 GC--T-ATC-AATAAAGATGTCATTTATTACAATAATA-A-AATATTAACTAATAAAATTCGCTA
* *
51656088 ATTTCGTT-AGTGGCATGTGAGCGATCATCAAAG-AA
124 ATTTCGTTGA-TGACAT-TGAGAGATCATCAAAGAAA
*
51656123 TTTTTTATTATTAA-A-GAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTTACGTGTGAG
1 TTTTTTATTATTAATAGGAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTGACGTGTGAG
* * * *
51656186 CTATCATTAAAGATGTCATTTATTATAATAATAAAATATTACCTGATAAAATTCGCTAATTTCGT
66 CTATCAATAAAGATGTCATTTATTACAATAATAAAATATTAACTAATAAAATTCGCTAATTTCGT
*
51656251 TGATGACATTGAGAGATCATTAAAGAAA
131 TGATGACATTGAGAGATCATCAAAGAAA
* * ** * * * *
51656279 TTTTTTATTATGACAAAAAAAAATACTAACTAATAAAATTCGTTAATTG-ATTAGTGA
1 TTTTTTATTATTA-ATAGGAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTGA
51656336 TGTATGAAGG
Statistics
Matches: 182, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
155 14 0.08
156 53 0.29
157 21 0.12
158 9 0.05
159 27 0.15
160 44 0.24
162 11 0.06
163 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (158 bp):
TTTTTTATTATTAATAGGAGAATATTAACTAATAAAACTCGTTAATTGCGTTAGTGACGTGTGAG
CTATCAATAAAGATGTCATTTATTACAATAATAAAATATTAACTAATAAAATTCGCTAATTTCGT
TGATGACATTGAGAGATCATCAAAGAAA
Found at i:51656565 original size:76 final size:76
Alignment explanation
Indices: 51656434--51656585 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
51656424 AAAGTTTTTT
*
51656434 TTAAGAAATCATTTATGTCACGTGACTGAGAATAACTCGAACTATAGCCTCTCCAACATATTACC
1 TTAAAAAATCATTTATGTCACGTGACTGAGAATAACTCGAACTATAGCCTCTCCAACATATTACC
51656499 TCGACCTTTCG
66 TCGACCTTTCG
51656510 TTAAAAAATCATTTATGTCACGTGACTGAGAATAACTCGAACTATAGCCTCTCCAACATATTACC
1 TTAAAAAATCATTTATGTCACGTGACTGAGAATAACTCGAACTATAGCCTCTCCAACATATTACC
51656575 TCGACCTTTCG
66 TCGACCTTTCG
51656586 GCCCATGATC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.30
Consensus pattern (76 bp):
TTAAAAAATCATTTATGTCACGTGACTGAGAATAACTCGAACTATAGCCTCTCCAACATATTACC
TCGACCTTTCG
Found at i:51656991 original size:60 final size:60
Alignment explanation
Indices: 51656898--51657018 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
51656888 TTGCCAGACA
51656898 AATCTTCAGACGAATCTTCGTCCATGGTTCTTTTCTCAAAGGCACTGCTAAAATTCTCAC
1 AATCTTCAGACGAATCTTCGTCCATGGTTCTTTTCTCAAAGGCACTGCTAAAATTCTCAC
51656958 AATCTTCAGACGAATCTTCGTCCATGGTTCTTTTCTCAAAGGCACTGCTAAAATTCTCAC
1 AATCTTCAGACGAATCTTCGTCCATGGTTCTTTTCTCAAAGGCACTGCTAAAATTCTCAC
51657018 A
1 A
51657019 CTCTCTCATC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.33
Consensus pattern (60 bp):
AATCTTCAGACGAATCTTCGTCCATGGTTCTTTTCTCAAAGGCACTGCTAAAATTCTCAC
Found at i:51660255 original size:3 final size:3
Alignment explanation
Indices: 51660247--51660273 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
51660237 TCTTTAATTC
51660247 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
51660274 GTCTAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:51660820 original size:81 final size:79
Alignment explanation
Indices: 51660490--51661117 Score: 698
Period size: 78 Copynumber: 8.1 Consensus size: 79
51660480 GATCATTCAT
* *
51660490 ACGTCACTAACG-AATTAACAAATTTTATTAGTTAATATTTATTTTATTGTAATAAAAAAAAT-T
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTT-CTTTATTGTAATAAAAAAAATCT
*
51660553 TTAATGATCGCTCA-
65 TTGATGATCGCTCAC
* * ** * * *
51660567 ACGTAACTAATGAAATTAAAAAATTTTATTAGTTAATATTTTTTTATTGTAATAAAAGACATCTT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAATAAAAAAAATCTT
* **
51660632 TAATGATCATTCA-
66 TGATGATCGCTCAC
* * *
51660645 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAAAATTT-TTTATTGTAATAAAAGACATCTT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAATAAAAAAAATCTT
* *
51660709 TAATGACCGCTCAC
66 TGATGATCGCTCAC
* * *
51660723 ACGTCACTACCGAAATTAACGAGTTTTATTAGTTAACATTCTCTTTATTGTAATAAAAAAAATTC
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAATAAAAAAAA-TC
*
51660788 TTTGATGATCACTCAC
64 TTTGATGATCGCTCAC
* * * * *
51660804 ACATCACTAACGAAATTAACGAATTTTATTAGTTAATGTTCACTTTATTGTAATAAAAAAATTAT
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAATAAAAAAAATCT
51660869 TTGATGATCGCTCAC
65 TTGATGATCGCTCAC
* * *
51660884 ACGTCAC-AACTGAAATTAACGAGTTTTATTAGTTAACATTCTCTTTATTGTAAT-AAAAAATTC
1 ACGTCACTAAC-GAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAATAAAAAAAATC
*
51660947 TTTGATGATCACTCAC
64 TTTGATGATCGCTCAC
* *
51660963 ACATCACTAACGAAATTAACGAATTTTATTAG-T--TA-------A-TGTAATAAAAAAAATTTA
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAATAAAAAAAA--TC
*
51661017 TTTGATGATTGCTCAC
64 TTTGATGATCGCTCAC
* * * *
51661033 ACGTCACTAACGAAATTAACGAATTTTATCAGTTAATATTCTCCTTATTGTAAGAAAAAAACATA
1 ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATT-TCTTTATTGTAATAAAAAAA-ATC
51661098 TTTGATGATCGCTCAC
64 TTTGATGATCGCTCAC
51661114 ACGT
1 ACGT
51661118 GTTGATGTTT
Statistics
Matches: 477, Mismatches: 50, Indels: 44
0.84 0.09 0.08
Matches are distributed among these distances:
67 6 0.01
68 7 0.01
70 45 0.09
71 1 0.00
73 2 0.00
76 1 0.00
77 62 0.13
78 114 0.24
79 53 0.11
80 81 0.17
81 92 0.19
82 12 0.03
83 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (79 bp):
ACGTCACTAACGAAATTAACGAATTTTATTAGTTAATATTTCTTTATTGTAATAAAAAAAATCTT
TGATGATCGCTCAC
Found at i:51660836 original size:159 final size:159
Alignment explanation
Indices: 51660493--51661115 Score: 744
Period size: 159 Copynumber: 4.0 Consensus size: 159
51660483 CATTCATACG
* *
51660493 TCACTAACG-AATTAACAAATTTTATTAGTTAATATTTATTTTATTGTAATAAAAAAAAT-TTTA
1 TCACTAACGAAATTAACGAATTTTATTAGTTAA-AATTATTTTATTGTAATAAAAAAAATATTTA
* * ** * *
51660556 ATGATCGCTCA-ACGTAACTAATGAAATTAAAAAATTTTATTAGTTAATATT-TTTTTATTGTAA
65 ATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAACATTCTCTTTATTGTAA
* * * * *
51660619 TAAAAGACATCTTTAATGATCATTCA-ACG
130 TAAAAAAAATCTTTGATGATCACTCACACA
* * *
51660648 TCACTAACGAAATTAACGAATTTTATTAGTTAAAATT-TTTTATTGTAATAAAAGACATCTTTAA
1 TCACTAACGAAATTAACGAATTTTATTAGTTAAAATTATTTTATTGTAATAAAAAAAATATTTAA
* * *
51660712 TGACCGCTCACACGTCACTACCGAAATTAACGAGTTTTATTAGTTAACATTCTCTTTATTGTAAT
66 TGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAACATTCTCTTTATTGTAAT
51660777 AAAAAAAATTCTTTGATGATCACTCACACA
131 AAAAAAAA-TCTTTGATGATCACTCACACA
** * * *
51660807 TCACTAACGAAATTAACGAATTTTATTAGTTAATGTTCACTTTATTGTAATAAAAAAATTATTTG
1 TCACTAACGAAATTAACGAATTTTATTAGTTAAAATT-ATTTTATTGTAATAAAAAAAATATTTA
*
51660872 ATGATCGCTCACACGTCAC-AACTGAAATTAACGAGTTTTATTAGTTAACATTCTCTTTATTGTA
65 ATGATCGCTCACACGTCACTAAC-GAAATTAACGAATTTTATTAGTTAACATTCTCTTTATTGTA
*
51660936 AT-AAAAAATTCTTTGATGATCACTCACACA
129 ATAAAAAAAATCTTTGATGATCACTCACACA
51660966 TCACTAACGAAATTAACGAATTTTATTAG------TTA----A-TGTAATAAAAAAAATTTATTT
1 TCACTAACGAAATTAACGAATTTTATTAGTTAAAATTATTTTATTGTAATAAAAAAAA--TATTT
* * * * *
51661020 GATGATTGCTCACACGTCACTAACGAAATTAACGAATTTTATCAGTTAATATTCTCCTTATTGTA
64 AATGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAACATTCTCTTTATTGTA
* * *
51661085 AGAAAAAAACATATTTGATGATCGCTCACAC
129 ATAAAAAAA-ATCTTTGATGATCACTCACAC
51661116 GTGTTGATGT
Statistics
Matches: 415, Mismatches: 39, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
147 13 0.03
148 1 0.00
149 62 0.15
150 9 0.02
151 18 0.04
152 1 0.00
153 2 0.00
154 19 0.05
155 26 0.06
156 55 0.13
157 18 0.04
158 15 0.04
159 87 0.21
160 8 0.02
161 81 0.20
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (159 bp):
TCACTAACGAAATTAACGAATTTTATTAGTTAAAATTATTTTATTGTAATAAAAAAAATATTTAA
TGATCGCTCACACGTCACTAACGAAATTAACGAATTTTATTAGTTAACATTCTCTTTATTGTAAT
AAAAAAAATCTTTGATGATCACTCACACA
Found at i:51661021 original size:70 final size:69
Alignment explanation
Indices: 51660938--51661069 Score: 210
Period size: 70 Copynumber: 1.9 Consensus size: 69
51660928 TTATTGTAAT
* *
51660938 AAAAAATTCTTTGATGATCACTCACACATCACTAACGAAATTAACGAATTTTATTAGTTAATGTA
1 AAAAAATTATTTGATGATCACTCACACATCACTAACGAAATTAACGAATTTTATCAGTTAATGTA
51661003 ATAA
66 ATAA
** *
51661007 AAAAAATTTATTTGATGATTGCTCACACGTCACTAACGAAATTAACGAATTTTATCAGTTAAT
1 AAAAAA-TTATTTGATGATCACTCACACATCACTAACGAAATTAACGAATTTTATCAGTTAAT
51661070 ATTCTCCTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
69 6 0.11
70 51 0.89
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (69 bp):
AAAAAATTATTTGATGATCACTCACACATCACTAACGAAATTAACGAATTTTATCAGTTAATGTA
ATAA
Found at i:51668297 original size:20 final size:21
Alignment explanation
Indices: 51668263--51668304 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
51668253 CCCGCTATCC
51668263 AATAAAAACCTAAAATT-CCT
1 AATAAAAACCTAAAATTGCCT
51668283 AATAATAAACC-AAAATTGCCT
1 AATAA-AAACCTAAAATTGCCT
51668304 A
1 A
51668305 TCCGATTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.55, C:0.19, G:0.02, T:0.24
Consensus pattern (21 bp):
AATAAAAACCTAAAATTGCCT
Found at i:51668433 original size:32 final size:32
Alignment explanation
Indices: 51668392--51668457 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
51668382 GAACACAAAA
*
51668392 TATAAATTTATATCAAATT-TGATTATTTAGCT
1 TATAAATTTATATCAAATTCAG-TTATTTAGCT
51668424 TATAAATTTATATCAAATTCAGTTATTTAGCT
1 TATAAATTTATATCAAATTCAGTTATTTAGCT
51668456 TA
1 TA
51668458 GGTAAAAACT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (32 bp):
TATAAATTTATATCAAATTCAGTTATTTAGCT
Found at i:51670881 original size:36 final size:36
Alignment explanation
Indices: 51670830--51671017 Score: 241
Period size: 36 Copynumber: 4.9 Consensus size: 36
51670820 AAGCTACCAT
51670830 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
*
51670866 TTATCACTTTTTCACTTGATCAGATAAGTATAGCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
*
51670902 TTATCACTTTTTCACTTGATCAGATAAGTGTAGATAAAGCTACCAC
1 TTATCACTTTGTCACTTGATCAGATAA--GT--AT--AG----CAC
* *
51670948 TTATCACTTTGTCTCTTGATCAGATAAGTGTAGCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
*
51670984 TTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 TTATCACTTTGTCACTTGATCAGATAAGTATAGC
51671018 TAAAGCTACC
Statistics
Matches: 137, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
36 98 0.72
38 2 0.01
40 4 0.03
42 3 0.02
44 2 0.01
46 28 0.20
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (36 bp):
TTATCACTTTGTCACTTGATCAGATAAGTATAGCAC
Found at i:51670938 original size:46 final size:46
Alignment explanation
Indices: 51670899--51671053 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 46
51670889 ATAAGTATAG
* *
51670899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGATAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGATAAAGATAC
*
51670945 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGATAAAGATAC
* *
51670981 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGATAAAGATAC
* **
51671027 CACTTATCACTTTATCTTTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
51671054 AGTACTCAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
36 29 0.31
38 2 0.02
39 1 0.01
40 3 0.03
42 3 0.03
43 1 0.01
44 2 0.02
46 52 0.56
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGATAAAGATAC
Found at i:51670951 original size:82 final size:82
Alignment explanation
Indices: 51670863--51671053 Score: 319
Period size: 82 Copynumber: 2.3 Consensus size: 82
51670853 ATAAGTATAG
* * *
51670863 CACTTATCACTTTTTCACTTGATCAGATAAGTATAGCACTTATCACTTTTTCACTTGATCAGATA
1 CACTTATCACTTTATCTCTTGATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATA
51670928 AGTGTAGATAAAGCTAC
66 AGTGTAGATAAAGCTAC
* *
51670945 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCACTTATCACTTTGTCACTTGATCAGATA
1 CACTTATCACTTTATCTCTTGATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATA
*
51671010 AGTGTAGCTAAAGCTAC
66 AGTGTAGATAAAGCTAC
*
51671027 CACTTATCACTTTATCTTTTGATCAGA
1 CACTTATCACTTTATCTCTTGATCAGA
51671054 AGTACTCAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 102 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (82 bp):
CACTTATCACTTTATCTCTTGATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATA
AGTGTAGATAAAGCTAC
Found at i:51670955 original size:118 final size:115
Alignment explanation
Indices: 51670784--51671017 Score: 369
Period size: 118 Copynumber: 2.0 Consensus size: 115
51670774 TATGTATGAT
* *
51670784 CACTTATCATTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCATTTATCACTTTGTCACTTGA
1 CACTTATCATTTGTCCCTGATCAGATAAGTGTAGATAAGCTACCACTTATCACTTTGTCACTTGA
*
51670849 TCAGATAAGTATAGCACTTATCACTTTTTCACTTGATCAGATAAGTATAG
66 TCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* * *
51670899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGATAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCA-TTTGTC-CCTGATCAGATAAGTGTAGAT-AAGCTACCACTTATCACTTTGTCACT
* *
51670964 TGATCAGATAAGTGTAGCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
63 TGATCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTATAG
51671017 C
1 C
51671018 TAAAGCTACC
Statistics
Matches: 108, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
115 9 0.08
116 5 0.05
117 19 0.18
118 75 0.69
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (115 bp):
CACTTATCATTTGTCCCTGATCAGATAAGTGTAGATAAGCTACCACTTATCACTTTGTCACTTGA
TCAGATAAGTATAGCACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:51680685 original size:21 final size:20
Alignment explanation
Indices: 51680638--51680719 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 20
51680628 TAATACTTGA
51680638 AATA-GTTTTTAT-AATTTT
1 AATATGTTTTTATAAATTTT
*
51680656 TATGA-GTTTTTATAGAATTTT
1 AAT-ATGTTTTTATA-AATTTT
** *
51680677 GTTATGTTTTTATAAAAATTTA
1 AATATGTTTTTAT--AAATTTT
51680699 AATATGTTTTTATAAATTTT
1 AATATGTTTTTATAAATTTT
51680719 A
1 A
51680720 TTTTTATTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
18 2 0.04
19 9 0.18
20 8 0.16
21 15 0.29
22 16 0.31
23 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (20 bp):
AATATGTTTTTATAAATTTT
Found at i:51680753 original size:28 final size:28
Alignment explanation
Indices: 51680700--51680754 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
51680690 AAAAATTTAA
*
51680700 ATATGTTTTTATAAATTTTATTTTTATT
1 ATATGTTTTTATAAATTTTATATTTATT
51680728 ATAT-TTTTTAT-AATATTTATAATTTAT
1 ATATGTTTTTATAAAT-TTTAT-ATTTAT
51680755 ATCTATTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 3 0.12
27 12 0.50
28 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (28 bp):
ATATGTTTTTATAAATTTTATATTTATT
Found at i:51680807 original size:36 final size:36
Alignment explanation
Indices: 51680732--51680811 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
51680722 TTTATTATAT
* * *
51680732 TTTTTATAATATTTATAATTTATATCTATTTCCATA
1 TTTTTATAATATTTATAATTTATATATATCTCAATA
*
51680768 TTTTT-TAATGTTTAATAATTTATATATATCT-AATAA
1 TTTTTATAATATTT-ATAATTTATATATATCTCAAT-A
51680804 TTTTTATA
1 TTTTTATA
51680812 GAAAAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 9 0.24
36 26 0.70
37 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (36 bp):
TTTTTATAATATTTATAATTTATATATATCTCAATA
Found at i:51682786 original size:19 final size:19
Alignment explanation
Indices: 51682762--51682852 Score: 146
Period size: 19 Copynumber: 4.8 Consensus size: 19
51682752 AATCATATAT
51682762 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
51682781 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
51682800 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51682819 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51682838 TCTAAGATTACATAT
1 TCTAAGATTGCATAT
51682853 ACTCAAAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51682809 original size:38 final size:38
Alignment explanation
Indices: 51682739--51682852 Score: 147
Period size: 38 Copynumber: 2.9 Consensus size: 38
51682729 AAATTAAATC
*
51682739 TCTAAGATTACAAAATCATATATTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATC--ATA-TCTAAGATTGCATATCATA
*
51682781 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* * *
51682819 TCTAGGATTGCATATCATATCTAAGATTACATAT
1 TCTAAGATTACATATCATATCTAAGATTGCATAT
51682853 ACTCAAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 49 0.74
39 3 0.05
41 4 0.06
42 10 0.15
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:51683564 original size:27 final size:27
Alignment explanation
Indices: 51683534--51683586 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
51683524 TAACTAAATT
*
51683534 AAATATAAATTTAAATAATTTTATAAA
1 AAATATAAATATAAATAATTTTATAAA
* **
51683561 AAATTTAAATATATTTAATTTTATAA
1 AAATATAAATATAAATAATTTTATAA
51683587 TAATTCAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
AAATATAAATATAAATAATTTTATAAA
Found at i:51685557 original size:3 final size:3
Alignment explanation
Indices: 51685549--51685617 Score: 75
Period size: 3 Copynumber: 22.7 Consensus size: 3
51685539 TTTAGCAATT
* * * *
51685549 TTA TTA TTA TTA TCA TCTT TTA TTA TTA TTA TTG TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
51685595 TTA TTA TTA TTA TGG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
51685618 GTGAGGTTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
3 52 0.98
4 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:51685905 original size:18 final size:18
Alignment explanation
Indices: 51685868--51685904 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
51685858 TTTTAAAATG
51685868 TATTTCATATATTTTATA
1 TATTTCATATATTTTATA
*
51685886 TATTTCGTA-A-TTTATA
1 TATTTCATATATTTTATA
51685902 TAT
1 TAT
51685905 ACACACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (18 bp):
TATTTCATATATTTTATA
Found at i:51689859 original size:17 final size:17
Alignment explanation
Indices: 51689833--51689870 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51689823 AGTCAAAATG
* *
51689833 AAAATGAAAAAAAATCA
1 AAAATAAAAAAAAAACA
51689850 AAAATAAAAAAAAAACA
1 AAAATAAAAAAAAAACA
51689867 AAAA
1 AAAA
51689871 GAAGAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAATAAAAAAAAAACA
Found at i:51690872 original size:13 final size:14
Alignment explanation
Indices: 51690843--51690895 Score: 65
Period size: 13 Copynumber: 3.9 Consensus size: 14
51690833 ACTCTGAGTC
* *
51690843 AAAATAAAAAATAA
1 AAAATGAAAAATGA
*
51690857 AAAATG-AGAATGA
1 AAAATGAAAAATGA
51690870 AAAATGAAAAATG-
1 AAAATGAAAAATGA
51690883 AAAATGAAAAATG
1 AAAATGAAAAATG
51690896 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
13 24 0.71
14 10 0.29
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:51690875 original size:7 final size:7
Alignment explanation
Indices: 51690843--51690895 Score: 65
Period size: 7 Copynumber: 7.9 Consensus size: 7
51690833 ACTCTGAGTC
*
51690843 AAAATAA
1 AAAATGA
*
51690850 AAAATAA
1 AAAATGA
51690857 AAAATG-
1 AAAATGA
*
51690863 AGAATGA
1 AAAATGA
51690870 AAAATGA
1 AAAATGA
51690877 AAAATG-
1 AAAATGA
51690883 AAAATGA
1 AAAATGA
51690890 AAAATG
1 AAAATG
51690896 GAGAGGCTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
6 11 0.27
7 30 0.73
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (7 bp):
AAAATGA
Found at i:51690895 original size:20 final size:20
Alignment explanation
Indices: 51690843--51690895 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
51690833 ACTCTGAGTC
* *
51690843 AAAATAAAAAATAAAAAATG
1 AAAATGAAAAATGAAAAATG
*
51690863 AGAATGAAAAATGAAAAATG
1 AAAATGAAAAATGAAAAATG
51690883 AAAATGAAAAATG
1 AAAATGAAAAATG
51690896 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (20 bp):
AAAATGAAAAATGAAAAATG
Found at i:51692232 original size:44 final size:44
Alignment explanation
Indices: 51692135--51692221 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
51692125 AGAATTTTAG
* *
51692135 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAATATAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAATAAAGTA
* * *
51692179 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATT-AAATAAAG
51692222 GATTTTATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 31 0.84
45 6 0.16
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAATAAAGTA
Found at i:51692332 original size:98 final size:98
Alignment explanation
Indices: 51692177--51692354 Score: 286
Period size: 98 Copynumber: 1.8 Consensus size: 98
51692167 TTGAATATAG
* *
51692177 TAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGAAGTT
1 TAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTT
*
51692242 ATAGTAGAGTAGATCACACCAGATTGAAGCCGA
66 ACAGTAGAGTAGATCACACCAGATTGAAGCCGA
* * *
51692275 TAATCCTATCTCCCTGAAATTATAGTGGAGTGGATTAAAATCATA-GATCTTATCTCTCTGAAGT
1 TAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAAT-AAAGGATCTTATCTCTCTGAAGT
51692339 TACAGTAGAGTAGATC
65 TACAGTAGAGTAGATC
51692355 GTATCTGGTC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
98 71 0.97
99 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (98 bp):
TAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTT
ACAGTAGAGTAGATCACACCAGATTGAAGCCGA
Found at i:51692413 original size:44 final size:44
Alignment explanation
Indices: 51692319--51692870 Score: 257
Period size: 44 Copynumber: 12.7 Consensus size: 44
51692309 TTAAAATCAT
* * * * *
51692319 AGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCT-G
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAG
*
51692362 -G-TCTTATCTCCCTGAGATTACA-TCGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGT-GGAGCAGATCGAAGCTAG
* * * * ** *
51692404 AGATCTTATCTCCCTAAGATTATAGTGGAGCGGAT-TAAAATAA
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAG
* * ** * * *
51692447 AGGATCTTATCTCTCT-AAAGTTACAGCAGAGTAGATCGCATC-AG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAG
* * * * **
51692491 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTCC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG--CTAG
* * * * *
51692535 AGATCTTATCTCCCTAAGGTTACAGTAGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAG
* *
51692579 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-C-AC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAG
* * * ** *
51692621 ATTATCCTATCTCCCTGA-AGTTACAGTGGAGCAGAT-TAAAATAA
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAG
** ** * ** *
51692665 AGGATCTTATCTCTTTGA-AGTTACAGCAGAGTAGATCCCA-TTAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGCTAG
* * * * * **
51692709 -G-TCTTATCTCCGTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG--CTAG
* *
51692753 AGATCTTATCTCCCTGAGGTTATAGTGGAGCAGA-CTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATC-GAAGCTAG
* * *
51692797 GGATCTGATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-A-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG-CTAG
** *
51692840 CTATCCTATCTCCCTGA-AGTTACAGTGGAGC
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGC
51692871 GGATTAAAAT
Statistics
Matches: 384, Mismatches: 95, Indels: 60
0.71 0.18 0.11
Matches are distributed among these distances:
40 1 0.00
41 83 0.22
42 12 0.03
43 62 0.16
44 154 0.40
45 8 0.02
46 64 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGCTAG
Found at i:51692559 original size:46 final size:45
Alignment explanation
Indices: 51692487--51692993 Score: 248
Period size: 44 Copynumber: 11.6 Consensus size: 45
51692477 GTAGATCGCA
* *
51692487 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * ** *
51692532 TCCAGATCTTATCTCCCTAAGGTTACAGTAGAGCAGATTGAAGCCA-
1 T-CAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAG-AAT
* * * * *
51692578 -GAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACAT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGA-AT
* * **
51692623 T---ATCCTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AAT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
** ** * ** * *
51692663 AAAGGATCTTATCTCTTTGAAGTTACAGCAGAGTAGATCC----CAT
1 TCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGA-CCGAAGAAT
* * *
51692706 T-AGGTCTTATCTCCGTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAA-T
* * *
51692751 TCAGATCTTATCTCCCTGAGGTTATAGTGGAGCAGACTGAAG-CT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
*** * * * *
51692795 AGGGATCTGATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * * * **
51692838 -CACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AAT
1 TCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
** * * * * ** * *
51692881 AAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTTGATC---GCA-
1 TCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * *
51692923 TCAGGTCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAA-T
* *
51692969 TCAGATCTTATCTCCCCGAGATTAC
1 TCAGATCTTATCTCCCTGAGGTTAC
51692994 GTTAAAGCAT
Statistics
Matches: 343, Mismatches: 91, Indels: 55
0.70 0.19 0.11
Matches are distributed among these distances:
40 4 0.01
41 55 0.16
42 7 0.02
43 57 0.17
44 125 0.36
45 3 0.01
46 91 0.27
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (45 bp):
TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
Found at i:51692632 original size:87 final size:85
Alignment explanation
Indices: 51692363--51692657 Score: 238
Period size: 87 Copynumber: 3.4 Consensus size: 85
51692353 TCGTATCTGG
* * * * *
51692363 TCTTATCTCCCTGAGATTACA-TCGGAGCAGATTGAAGCTAGAGATCTTATCTCCCTAAGATTAT
1 TCTTATCTCCCTAAG-TTACAGT-AGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTAC
* ** * **
51692427 AGTGGAGCGGATTAAAATAAAGGA
64 AGTGGAGCAGA-TCGAA-CAATTA
* * * * * * *
51692451 TCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA-TCAG-G-TCTTATCTCCCTGAGGTTACA
1 TCTTATCTCCCT-AAGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACA
* * *
51692513 GTGGAGTAGACCGAAGAATTCCAGA
65 GTGGAGCAGATCGAACAATT----A
51692538 TCTTATCTCCCTAAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACA
1 TCTTATCTCCCTAA-GTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACA
*
51692603 GCGGAGCAGATCGAACACATTA
65 GTGGAGCAGATCGAACA-ATTA
* *
51692625 TCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
1 TCTTATCTCCCT-AAGTTACAGTAGAGCAGATT
51692658 AAAATAAAGG
Statistics
Matches: 162, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
83 2 0.01
84 2 0.01
85 26 0.16
86 3 0.02
87 60 0.37
88 30 0.19
89 3 0.02
90 33 0.20
91 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (85 bp):
TCTTATCTCCCTAAGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAG
TGGAGCAGATCGAACAATTA
Found at i:51692671 original size:87 final size:87
Alignment explanation
Indices: 51692492--51692677 Score: 198
Period size: 87 Copynumber: 2.1 Consensus size: 87
51692482 TCGCATCAGG
* * * * *
51692492 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTCCAGATCTTATCTCCCTAAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGACCGAACAATT-C--ATCCTATCTCCCTAAGGTTA
* **
51692557 CAGTAGAGCAGATTGAAGCCAGAGA
63 CAGTAGAGCAGATTAAAGAAAGAGA
*
51692582 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACATT-ATCCTATCTCCCTGAA-GTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGACCGAACA-ATTCATCCTATCTCCCT-AAGGTTAC
* *
51692645 AGTGGAGCAGATTAAAATAAAG-GA
64 AGTAGAGCAGATT-AAAGAAAGAGA
51692669 TCTTATCTC
1 TCTTATCTC
51692678 TTTGAAGTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
87 40 0.49
88 6 0.07
90 33 0.40
91 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (87 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGACCGAACAATTCATCCTATCTCCCTAAGGTTACAG
TAGAGCAGATTAAAGAAAGAGA
Found at i:51692678 original size:218 final size:217
Alignment explanation
Indices: 51692363--51692984 Score: 967
Period size: 218 Copynumber: 2.8 Consensus size: 217
51692353 TCGTATCTGG
* * * * * *
51692363 TCTTATCTCCCTGAGATTACATCGGAGCAGATTGAAGCTAGAGATCTTATCTCCCT-AAGATTAT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-C-ACATATCCTATCTCCCTGAAG-TTAC
*
51692427 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCATCAGG
63 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGG
*
51692492 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTCCAGATCTTATCTCCCTAAGGTTA
128 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTA
*
51692557 CAGTAGAGCAGATTGAAGCCAGAGA
193 CAGTAGAGCAGACTGAAGCCAGAGA
51692582 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACATTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACA-TATCCTATCTCCCTGAAGTTACAG
* * * *
51692647 TGGAGCAGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGCAGAGTAGATCCCATTAGGTC
65 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
* * *
51692712 TTATCTCCGTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTATA
130 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACA
* * *
51692777 GTGGAGCAGACTGAAGCTAGGGA
195 GTAGAGCAGACTGAAGCCAGAGA
* *
51692800 TCTGATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACA-TATCCTATCTCCCTGAAGTTACAG
* * *
51692865 TGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTTGATCGCATCAGGTC
65 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTC
*
51692930 TTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCC
130 TTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCC
51692985 CGAGATTACG
Statistics
Matches: 371, Mismatches: 30, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
217 2 0.01
218 332 0.89
219 37 0.10
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAACACATATCCTATCTCCCTGAAGTTACAGT
GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTAAGGTTACAG
TAGAGCAGACTGAAGCCAGAGA
Found at i:51692689 original size:87 final size:87
Alignment explanation
Indices: 51692541--51692701 Score: 193
Period size: 87 Copynumber: 1.9 Consensus size: 87
51692531 TTCCAGATCT
* ** *
51692541 TATCTCCCTAAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTAAGGTTACAGTAGAGCAGATTAAAGAAAGAGATCTTATCTCCCTGAGATTACAGCA
51692606 GAGCAGATCGAACACATTATCC
66 GAGCAGATCGAACACATTATCC
* * **
51692628 TATCTCCCTGAA-GTTACAGTGGAGCAGATTAAAATAAAG-GATCTTATCTCTTTGA-AGTTACA
1 TATCTCCCT-AAGGTTACAGTAGAGCAGATT-AAAGAAAGAGATCTTATCTCCCTGAGA-TTACA
*
51692690 GCAGAGTAGATC
63 GCAGAGCAGATC
51692702 CCATTAGGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
86 1 0.02
87 55 0.89
88 6 0.10
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (87 bp):
TATCTCCCTAAGGTTACAGTAGAGCAGATTAAAGAAAGAGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAACACATTATCC
Found at i:51694519 original size:3 final size:3
Alignment explanation
Indices: 51694511--51694579 Score: 66
Period size: 3 Copynumber: 22.7 Consensus size: 3
51694501 TTTAGCAATT
* * * * *
51694511 TTA TTA TTA TTA TCA TCTT TTA TTA TTA TTG TTG TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
51694557 TTA TTA TTA TTA TGG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
51694580 GTGAGGTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
3 54 0.98
4 1 0.02
ACGTcount: A:0.25, C:0.03, G:0.07, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:51694864 original size:18 final size:18
Alignment explanation
Indices: 51694827--51694863 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
51694817 TTTTAAAATG
51694827 TATTTCATATATTTTATA
1 TATTTCATATATTTTATA
*
51694845 TATTTCGTA-A-TTTATA
1 TATTTCATATATTTTATA
51694861 TAT
1 TAT
51694864 ACACACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (18 bp):
TATTTCATATATTTTATA
Found at i:51700410 original size:24 final size:23
Alignment explanation
Indices: 51700379--51700423 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
51700369 TATACATGAA
*
51700379 TTAATAAAATATATAAAGTATATT
1 TTAATAAAATAAATAAA-TATATT
51700403 TTAATAAAATAAATAAATATA
1 TTAATAAAATAAATAAATATA
51700424 CGTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAATAAAATAAATAAATATATT
Found at i:51700847 original size:22 final size:22
Alignment explanation
Indices: 51700791--51700848 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
51700781 ATATAAGTAT
51700791 ATATATATTATA-AGAATAATGC
1 ATATATA-TATACAGAATAATGC
* *
51700813 ATGTATGTCATACA-AATATATGC
1 ATATATAT-ATACAGAATA-ATGC
51700836 ATATATATATACA
1 ATATATATATACA
51700849 TACGTACCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 1 0.03
22 17 0.59
23 11 0.38
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (22 bp):
ATATATATATACAGAATAATGC
Found at i:51700903 original size:3 final size:3
Alignment explanation
Indices: 51700895--51700930 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
51700885 AATAGGAAGA
51700895 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
51700931 AAGATGATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51700931 original size:10 final size:10
Alignment explanation
Indices: 51700864--51700930 Score: 61
Period size: 10 Copynumber: 7.0 Consensus size: 10
51700854 ACCAAAGGTT
51700864 TAAATAA-AA
1 TAAATAATAA
*
51700873 TAAATAAAAA
1 TAAATAATAA
**
51700883 TAAATAGGAA
1 TAAATAATAA
*
51700893 GAAATAATAA
1 TAAATAATAA
51700903 T-AATAATAA
1 TAAATAATAA
51700912 T-AATAATAA
1 TAAATAATAA
51700921 -ATAATAATAA
1 TA-AATAATAA
51700931 AAGATGATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
9 24 0.49
10 25 0.51
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.25
Consensus pattern (10 bp):
TAAATAATAA
Found at i:51700965 original size:45 final size:44
Alignment explanation
Indices: 51700869--51700972 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 44
51700859 AGGTTTAAAT
*
51700869 AAAATAAATAAAAATAAATAGGAAGAAATAATAATAATAATAAT
1 AAAATAAATAAAAATAAATAGGAAGAAATAATAATAATAATAAG
* *
51700913 AATAATAAATAATAATAAA-A-GATGATAATACATTAA-AATAATGAAG
1 AA-AATAAATAAAAATAAATAGGAAGA-AATA-A-TAATAATAAT-AAG
51700959 AAAAT-AATAAAAAT
1 AAAATAAATAAAAAT
51700973 GCTAAAAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
43 4 0.08
44 15 0.29
45 25 0.49
46 7 0.14
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.24
Consensus pattern (44 bp):
AAAATAAATAAAAATAAATAGGAAGAAATAATAATAATAATAAG
Found at i:51701624 original size:16 final size:16
Alignment explanation
Indices: 51701605--51701649 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
51701595 ATAAATAAAT
51701605 AAATAAATAAAAATAA
1 AAATAAATAAAAATAA
* *
51701621 AAATAAACAACAATAA
1 AAATAAATAAAAATAA
* *
51701637 AAAGAGATAAAAA
1 AAATAAATAAAAA
51701650 AGAAAGAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (16 bp):
AAATAAATAAAAATAA
Found at i:51702467 original size:50 final size:50
Alignment explanation
Indices: 51702404--51702559 Score: 199
Period size: 50 Copynumber: 3.1 Consensus size: 50
51702394 CATCAGGGGG
* * * * *
51702404 GTAAGATCTGCTGTTGTAGCTTCAATAT-TTTTAATTGCAATG-TCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATATGTTCT-ACTGCAACGCT-AGGAAA
*
51702454 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCTACTGCAACGCTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATATGTTCTACTGCAACGCTAGGAAA
* * *
51702504 GTAAGATCCGTTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATATGTTCTACTGCAACGCTAGGAAA
51702554 GTAAGA
1 GTAAGA
51702560 CTGGATGCGA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
50 92 0.96
51 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (50 bp):
GTAAGATCCGCTGTTGTAGCTTCAATATGTTCTACTGCAACGCTAGGAAA
Found at i:51702629 original size:44 final size:44
Alignment explanation
Indices: 51702569--51703078 Score: 318
Period size: 44 Copynumber: 11.8 Consensus size: 44
51702559 ACTGGATGCG
* *
51702569 ATCTGCTCTGCTGCAACTTCAGAGAGATAAGATCTGTGGTATTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * * *
51702613 ATCCGCTCCACTGCAACTTCAGGGAGATAGGA-CTGAT-TTCTTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* ** * * ** * *
51702657 GTCTAATCTACTACAACTTCAGGGAGATAAGA-C--TGAATGTG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
*
51702698 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * * * *
51702742 ACCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGAT-TTATTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* * * * * * * *
51702786 GTCTACTCCACTGCAACTTCA-AGGAGACAA-AAC--TGGATGTG
1 ATCTGCTCTACTGCAACTTCAGA-GAGATAAGATCTGTGGTTTTA
*
51702827 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
51702871 ATCCGCTCTACTGCAACTTCAGAGAGATAGGAT-TGAT-TTCTTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* * * * * ***
51702915 GTCTGCTCCACTGCAACTTCCGGGAGATAAGA-C--TGGATGCG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
51702956 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * * *
51703000 ACCCGCTCTACTGCAACTTCAGGGAGATAGGAT-TGAT-TTCTTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* * *
51703044 GTCTGCTCCACTGCAACTTCAGGGAGATAAGATCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
51703079 CTAATATTCA
Statistics
Matches: 350, Mismatches: 91, Indels: 49
0.71 0.19 0.10
Matches are distributed among these distances:
41 87 0.25
42 5 0.01
43 12 0.03
44 245 0.70
45 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
Found at i:51702711 original size:85 final size:84
Alignment explanation
Indices: 51702617--51703028 Score: 282
Period size: 85 Copynumber: 4.8 Consensus size: 84
51702607 GTATTAATCC
* * * ** * *
51702617 GCTCCACTGCAACTTCAGGGAGATAGGACTGATTTCTTTCGTCTAATCTACTACAACTTCAGGGA
1 GCTCTACTGCAACTTCAGAGAGATAAGACTGATTT-TTTCGTCTGCTCCACTGCAACTTCAGGGA
51702682 GATAAGACTGAATGTGATCT
65 GATAAGACTGAATGTGATCT
* *** *
51702702 GCTCTACTGCAACTTCAGAGAGATAAGATCT-ATGGTTTTAACCCGCTCCACTGCAACTTCAGGG
1 GCTCTACTGCAACTTCAGAGAGATAAGA-CTGAT-TTTTTCGTCTGCTCCACTGCAACTTCAGGG
* * *
51702766 AGATAGGATTGATTTATTTCG-TCT
64 AGATAAGACTGA---ATGT-GATCT
* * * * * * *
51702790 ACTCCACTGCAACTTCA-AGGAGACAAAACTGGA---TGT-GATCTGCTCTACTGCAACTTCAGA
1 GCTCTACTGCAACTTCAGA-GAGATAAGACT-GATTTTTTCG-TCTGCTCCACTGCAACTTCAGG
** * * *
51702850 GAGATAAGATCTATGGTTTTAATCC
63 GAGATAAGA-C--TGAATGTGATCT
* * *
51702875 GCTCTACTGCAACTTCAGAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCCGGGA
1 GCTCTACTGCAACTTCAGAGAGATAAGACTGATTT-TTTCGTCTGCTCCACTGCAACTTCAGGGA
* *
51702940 GATAAGACTGGATGCGATCT
65 GATAAGACTGAATGTGATCT
* *** * *
51702960 GCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGGTTTTAACCCGCTCTACTGCAACTTCAGGG
1 GCTCTACTGCAACTTCAGAGAGATAAGA-CTGAT-TTTTTCGTCTGCTCCACTGCAACTTCAGGG
51703024 AGATA
64 AGATA
51703029 GGATTGATTT
Statistics
Matches: 250, Mismatches: 55, Indels: 44
0.72 0.16 0.13
Matches are distributed among these distances:
84 2 0.01
85 174 0.70
86 7 0.03
87 4 0.02
88 60 0.24
89 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (84 bp):
GCTCTACTGCAACTTCAGAGAGATAAGACTGATTTTTTCGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTGAATGTGATCT
Found at i:51702786 original size:129 final size:129
Alignment explanation
Indices: 51702555--51703075 Score: 835
Period size: 129 Copynumber: 4.0 Consensus size: 129
51702545 GCTAGGAAAG
* * * *
51702555 TAAGACTGGATGCGATCTGCTCTGCTGCAACTTCAGAGAGATAAGATCTGTGGTATTAATCCGCT
1 TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
* * * *
51702620 CCACTGCAACTTCAGGGAGATAGGACTGATTTCTTTCGTCTAATCTACTACAACTTCAGGGAGA
66 CCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAGGGAGA
* *
51702684 TAAGACTGAATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
1 TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
* *
51702749 CCACTGCAACTTCAGGGAGATAGGATTGATTTATTTCGTCTACTCCACTGCAACTTCAAGGAGA
66 CCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAGGGAGA
* * * *
51702813 CAAAACTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
1 TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
* * * *
51702878 CTACTGCAACTTCAGAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCCGGGAGA
66 CCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAGGGAGA
*
51702942 TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAACCCGCT
1 TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
* *
51703007 CTACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGA
66 CCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAGGGAGA
51703071 TAAGA
1 TAAGA
51703076 TCTCTAATAT
Statistics
Matches: 363, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 363 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (129 bp):
TAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCT
CCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAGGGAGA
Found at i:51715280 original size:24 final size:23
Alignment explanation
Indices: 51715249--51715293 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
51715239 TATACATGAA
*
51715249 TTAATAAAATATATAAAGTATATT
1 TTAATAAAATAAATAAA-TATATT
51715273 TTAATAAAATAAATAAATATA
1 TTAATAAAATAAATAAATATA
51715294 CGTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAATAAAATAAATAAATATATT
Found at i:51715715 original size:22 final size:22
Alignment explanation
Indices: 51715659--51715715 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
51715649 ATATAAGTAT
51715659 ATATATATTATA-AGAATAATGC
1 ATATATA-TATACAGAATAATGC
* *
51715681 ATGTATGTCATACA-AATATATGC
1 ATATATAT-ATACAGAATA-ATGC
51715704 ATATATATATAC
1 ATATATATATAC
51715716 GTACCAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 1 0.04
22 16 0.57
23 11 0.39
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (22 bp):
ATATATATATACAGAATAATGC
Found at i:51715742 original size:9 final size:10
Alignment explanation
Indices: 51715728--51715798 Score: 85
Period size: 10 Copynumber: 7.4 Consensus size: 10
51715718 ACCAAAGGTT
51715728 TAAATAA-AA
1 TAAATAATAA
*
51715737 TAAATAAAAA
1 TAAATAATAA
**
51715747 TAAATAGGAA
1 TAAATAATAA
*
51715757 GAAATAATAA
1 TAAATAATAA
51715767 T-AATAATAA
1 TAAATAATAA
51715776 T-AATAATAA
1 TAAATAATAA
51715785 TAAATAATAA
1 TAAATAATAA
51715795 TAAA
1 TAAA
51715799 AGATGATAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
9 25 0.46
10 29 0.54
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.25
Consensus pattern (10 bp):
TAAATAATAA
Found at i:51715767 original size:3 final size:3
Alignment explanation
Indices: 51715759--51715797 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
51715749 AATAGGAAGA
51715759 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
51715798 AAGATGATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51715820 original size:48 final size:49
Alignment explanation
Indices: 51715730--51715836 Score: 118
Period size: 48 Copynumber: 2.2 Consensus size: 49
51715720 CAAAGGTTTA
*
51715730 AATAA-AATAAATAAAAATAAATAGGAAGAAATAATAATAATAAT-AAT
1 AATAATAATAAATAAAAATAAATAGGAAGAAATAATAATAATAATGAAG
* *
51715777 AATAATAATAAATAATAATAAA-A-GATGATAATACATTAA-AATAATGAAG
1 AATAATAATAAATAAAAATAAATAGGAAGA-AATA-A-TAATAATAATGAAG
51715826 AA-AATAATAAA
1 AATAATAATAAA
51715837 AATGCTAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
46 4 0.08
47 10 0.19
48 31 0.60
49 7 0.13
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.24
Consensus pattern (49 bp):
AATAATAATAAATAAAAATAAATAGGAAGAAATAATAATAATAATGAAG
Found at i:51716489 original size:16 final size:16
Alignment explanation
Indices: 51716470--51716514 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
51716460 ATAAATAAAT
51716470 AAATAAATAAAAATAA
1 AAATAAATAAAAATAA
* *
51716486 AAATAAACAACAATAA
1 AAATAAATAAAAATAA
* *
51716502 AAAGAGATAAAAA
1 AAATAAATAAAAA
51716515 AGAAAGAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (16 bp):
AAATAAATAAAAATAA
Found at i:51720621 original size:6 final size:6
Alignment explanation
Indices: 51720610--51720642 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
51720600 ATAAATAATA
51720610 AAATTT AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAA
51720643 ATACATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
AAATTT
Found at i:51720654 original size:18 final size:18
Alignment explanation
Indices: 51720606--51720642 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51720596 CAAAATAAAT
51720606 AATA-AAATTTAAATTTA
1 AATATAAATTTAAATTTA
*
51720623 AATTTAAATTTAAATTTA
1 AATATAAATTTAAATTTA
51720641 AA
1 AA
51720643 ATACATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATATAAATTTAAATTTA
Found at i:51722342 original size:40 final size:40
Alignment explanation
Indices: 51722298--51722427 Score: 124
Period size: 40 Copynumber: 3.3 Consensus size: 40
51722288 ATACACCAGT
**
51722298 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
1 TTGACACCCAGTGCCTCATCAGATAAACCGAAGTAATAAA
* *
51722338 TTGACACCCAGTGTCTCATCAGTTAAACCGAAG---TAAA
1 TTGACACCCAGTGCCTCATCAGATAAACCGAAGTAATAAA
* * * * *
51722375 TTGGCATCCAGTACCTCATC-GAACAAATCCGAAGTGATAAA
1 TTGACACCCAGTGCCTCATCAG-ATAAA-CCGAAGTAATAAA
*
51722416 TTGGCACCCAGT
1 TTGACACCCAGT
51722428 CATCAACTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
36 1 0.01
37 23 0.31
38 6 0.08
40 29 0.39
41 15 0.20
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
TTGACACCCAGTGCCTCATCAGATAAACCGAAGTAATAAA
Found at i:51738485 original size:34 final size:34
Alignment explanation
Indices: 51738442--51738510 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
51738432 TGTATTATAA
51738442 TTTAGTATATATACACACGCATATTCATGCATGC
1 TTTAGTATATATACACACGCATATTCATGCATGC
51738476 TTTAGTATATATACACACGCATATTCATGCATGC
1 TTTAGTATATATACACACGCATATTCATGCATGC
51738510 T
1 T
51738511 ATCTGATGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (34 bp):
TTTAGTATATATACACACGCATATTCATGCATGC
Found at i:51740701 original size:12 final size:13
Alignment explanation
Indices: 51740678--51740709 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
51740668 AGAAAGAGAC
51740678 GAAAAGAGGGGAA
1 GAAAAGAGGGGAA
51740691 GAAAA-AGGGGAA
1 GAAAAGAGGGGAA
51740703 GAAAAGA
1 GAAAAGA
51740710 AAGGGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (13 bp):
GAAAAGAGGGGAA
Found at i:51741347 original size:24 final size:23
Alignment explanation
Indices: 51741319--51741365 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
51741309 TAATCATGGG
51741319 ACATTT-AAAGTAAGGTAAGTAATA
1 ACATTTGAAAGTAA-GTAAG-AATA
*
51741343 ACATTTGAAATTAAGTAAGAATA
1 ACATTTGAAAGTAAGTAAGAATA
51741366 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTGAAAGTAAGTAAGAATA
Found at i:51742447 original size:2 final size:2
Alignment explanation
Indices: 51742440--51742464 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51742430 AGTTCTGTTT
51742440 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
51742465 GTTTTAGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51743597 original size:22 final size:21
Alignment explanation
Indices: 51743572--51743631 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 21
51743562 CTATACAAAT
51743572 AGCATAAATGTGCTAAACGGAG
1 AGCAT-AATGTGCTAAACGGAG
*
51743594 AGCATTAATGTGCTAAACTGAG
1 AGCA-TAATGTGCTAAACGGAG
51743616 AGCACTAATGTGCTAA
1 AGCA-TAATGTGCTAA
51743632 TAATCAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 34 0.97
23 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (21 bp):
AGCATAATGTGCTAAACGGAG
Found at i:51744883 original size:70 final size:70
Alignment explanation
Indices: 51744770--51744909 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 70
51744760 CTCAGATATA
* * * * *
51744770 AAAAAGAGATCATACCCAGTAAATTAGGACACGATCTTTTCTTACTTCCCGAGATCTTTTAAAAC
1 AAAAAGAGATCATACCCAATAAATTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
51744835 TTGAG
66 TTGAG
* * *
51744840 AAAAAGAGATCATGCCCAATAAGTTAGGACACAATCTCTTCTTAATTCTCGAGATCGTTTAAAAC
1 AAAAAGAGATCATACCCAATAAATTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
51744905 TTGAG
66 TTGAG
51744910 TTTGAAAAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (70 bp):
AAAAAGAGATCATACCCAATAAATTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
TTGAG
Found at i:51745562 original size:26 final size:27
Alignment explanation
Indices: 51745525--51745576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
51745515 ATATATACAC
*
51745525 AAATTTACAATAAATAATATATAAAAG
1 AAATTTACAATAAATAATACATAAAAG
*
51745552 AAATTTA-AATAAATTATACATAAAA
1 AAATTTACAATAAATAATACATAAAA
51745577 CAGTTCAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
AAATTTACAATAAATAATACATAAAAG
Found at i:51746508 original size:15 final size:15
Alignment explanation
Indices: 51746474--51746512 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
51746464 TACAAAAACG
51746474 AAAATAAAAGAGATAA
1 AAAATAAAAGAGAT-A
51746490 AAAATAAAAAGAGATA
1 AAAAT-AAAAGAGATA
51746506 AAAATAA
1 AAAATAA
51746513 TAAAATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAAATAAAAGAGATA
Found at i:51746517 original size:19 final size:17
Alignment explanation
Indices: 51746474--51746509 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
51746464 TACAAAAACG
51746474 AAAAT-AAAAGAGATAA
1 AAAATAAAAAGAGATAA
51746490 AAAATAAAAAGAGATAA
1 AAAATAAAAAGAGATAA
51746507 AAA
1 AAA
51746510 TAATAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAATAAAAAGAGATAA
Found at i:51747077 original size:21 final size:22
Alignment explanation
Indices: 51747050--51747101 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
51747040 AGCGGTGGTG
51747050 GTGAGATTAGG-TACTGTAGC-
1 GTGAGATTAGGATACTGTAGCA
51747070 GTTGAGATT-GGATACTGTAGCA
1 G-TGAGATTAGGATACTGTAGCA
51747092 GTGAGATTAG
1 GTGAGATTAG
51747102 AAACAGCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 3 0.11
21 23 0.82
22 2 0.07
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.31
Consensus pattern (22 bp):
GTGAGATTAGGATACTGTAGCA
Found at i:51747288 original size:18 final size:18
Alignment explanation
Indices: 51747265--51747398 Score: 90
Period size: 18 Copynumber: 7.9 Consensus size: 18
51747255 TTATTATTAA
51747265 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
51747283 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
*
51747300 ATATGAATTTACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * *
51747318 -TATAATAT-ATAATATT
1 ATATAATTTAATAAAAAT
* * *
51747334 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
51747353 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
*
51747365 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
51747383 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
51747399 TTCTTAGTAT
Statistics
Matches: 88, Mismatches: 17, Indels: 22
0.69 0.13 0.17
Matches are distributed among these distances:
12 1 0.01
13 5 0.06
14 2 0.02
15 3 0.03
16 8 0.09
17 22 0.25
18 42 0.48
19 5 0.06
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:51747336 original size:15 final size:15
Alignment explanation
Indices: 51747316--51747371 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
51747306 ATTTACTAAA
*
51747316 ATTATAATATATAAT
1 ATTATAAAATATAAT
51747331 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
51747344 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
51747357 ATTATTAAATATAAT
1 ATTATAAAATATAAT
51747372 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:51747384 original size:59 final size:58
Alignment explanation
Indices: 51747321--51747519 Score: 199
Period size: 59 Copynumber: 3.3 Consensus size: 58
51747311 CTAAAATTAT
51747321 AATATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAATTT-AAATAATTATTATTAAATATAATTTAACAAA
* * * * * * ** *
51747380 AATATATAATTTAATAAAATTCTTAGTATTAAAT-ATTCTTATATGAATTTACTAAAATC-AT
1 AATATATAATTTAATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATAATTTAA-CAAA
*
51747441 AATATATAATACT-ATAAAATATAATTTTAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAA-TTTAAATAATTATTATTAAATATAATTTAACAAA
51747500 AATATATAATTTAATAAAAT
1 AATATATAATTTAATAAAAT
51747520 TCTTAGTATT
Statistics
Matches: 109, Mismatches: 20, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
58 4 0.04
59 51 0.47
60 17 0.16
61 33 0.30
62 4 0.04
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (58 bp):
AATATATAATTTAATAAAATATAATTTAAATAATTATTATTAAATATAATTTAACAAA
Found at i:51747432 original size:120 final size:120
Alignment explanation
Indices: 51747299--51747541 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
51747289 TTTAATAAAA
* *
51747299 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
51747364 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
*
51747419 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTTAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
51747484 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
51747539 TAT
1 TAT
51747542 GATTGTATCA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:51747448 original size:61 final size:60
Alignment explanation
Indices: 51747349--51747541 Score: 187
Period size: 61 Copynumber: 3.2 Consensus size: 60
51747339 ATATAATTTA
* **
51747349 AAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATT
1 AAAT-ATTCTTATTAAATATAATAAAACAAAAATATATAATTTAATAAAATTCTTAGTATT
* * * * * * * *
51747410 AAATATTCTTATATGAATTTACTAAAATC-ATAATATATAATACT-ATAAAA-T-ATAATTTT
1 AAATATTCTTAT-TAAATATAATAAAA-CAAAAATATATAAT-TTAATAAAATTCTTAGTATT
* **
51747469 AAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATT
1 AAAT-ATTCTTATTAAATATAATAAAACAAAAATATATAATTTAATAAAATTCTTAGTATT
51747530 AAATATTCTTAT
1 AAATATTCTTAT
51747542 GATTGTATCA
Statistics
Matches: 101, Mismatches: 23, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
58 2 0.02
59 35 0.35
60 23 0.23
61 39 0.39
62 2 0.02
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (60 bp):
AAATATTCTTATTAAATATAATAAAACAAAAATATATAATTTAATAAAATTCTTAGTATT
Found at i:51750629 original size:18 final size:18
Alignment explanation
Indices: 51750602--51750637 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51750592 TTTGCAAACC
51750602 AAGGGAAAGGGAAAAGGG
1 AAGGGAAAGGGAAAAGGG
* *
51750620 AAGGGGAAGGGGAAAGGG
1 AAGGGAAAGGGAAAAGGG
51750638 GAGAAGAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (18 bp):
AAGGGAAAGGGAAAAGGG
Found at i:51750638 original size:13 final size:13
Alignment explanation
Indices: 51750602--51750639 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
51750592 TTTGCAAACC
*
51750602 AAGGGAAAGGGAA
1 AAGGGAAAGGGGA
51750615 AAGGG-AAGGGGA
1 AAGGGAAAGGGGA
*
51750627 AGGGGAAAGGGGA
1 AAGGGAAAGGGGA
51750640 GAAGAAGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (13 bp):
AAGGGAAAGGGGA
Found at i:51752316 original size:13 final size:13
Alignment explanation
Indices: 51752298--51752322 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51752288 AAATTATTCA
51752298 ACCCAACCCAATT
1 ACCCAACCCAATT
51752311 ACCCAACCCAAT
1 ACCCAACCCAAT
51752323 AAAACTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:51752370 original size:38 final size:39
Alignment explanation
Indices: 51752303--51752377 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 39
51752293 ATTCAACCCA
*
51752303 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
* *
51752342 ACCCAATTA-TCAACTCAATAAAAATAAAACTAAAGT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGT
51752378 TTAACTCTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 24 0.73
39 9 0.27
ACGTcount: A:0.52, C:0.25, G:0.03, T:0.20
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
Found at i:51758223 original size:10 final size:11
Alignment explanation
Indices: 51758208--51758254 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
51758198 CAACTAAATC
51758208 ATTTCTCTC-A
1 ATTTCTCTCAA
*
51758218 ATTTCTCTCTA
1 ATTTCTCTCAA
51758229 ATATTCTCTCAA
1 AT-TTCTCTCAA
*
51758241 ATTCCTCTCAA
1 ATTTCTCTCAA
51758252 ATT
1 ATT
51758255 CCTATTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 9 0.27
11 14 0.42
12 10 0.30
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.47
Consensus pattern (11 bp):
ATTTCTCTCAA
Found at i:51758235 original size:12 final size:10
Alignment explanation
Indices: 51758208--51758251 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
51758198 CAACTAAATC
51758208 ATTTCTCTCA
1 ATTTCTCTCA
51758218 ATTTCTCTCTA
1 ATTTCTCTC-A
51758229 ATATTCTCTCAA
1 AT-TTCTCTC-A
*
51758241 ATTCCTCTCA
1 ATTTCTCTCA
51758251 A
1 A
51758252 ATTCCTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 11 0.37
11 9 0.30
12 10 0.33
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.45
Consensus pattern (10 bp):
ATTTCTCTCA
Found at i:51760076 original size:18 final size:18
Alignment explanation
Indices: 51760053--51760095 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51760043 TGCCAGGTGC
*
51760053 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
51760071 GTATCCTAACTCTTATAT
1 GTATCCTAACCCTTATAT
*
51760089 GTTTCCT
1 GTATCCT
51760096 TTTCCTAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:51760571 original size:49 final size:49
Alignment explanation
Indices: 51760516--51760636 Score: 206
Period size: 49 Copynumber: 2.5 Consensus size: 49
51760506 GTTTATATTA
* * *
51760516 ATGTAATAAAATAAAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTAATATTATTTC
51760565 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTAATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTAATATTATTTC
*
51760614 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
51760637 AATACTCTTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTAATATTATTTC
Found at i:51763902 original size:124 final size:124
Alignment explanation
Indices: 51763733--51764017 Score: 482
Period size: 124 Copynumber: 2.3 Consensus size: 124
51763723 CCCAAACATG
*
51763733 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
*
51763798 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTTTTCAGGAC
66 TTGAAGC-GTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
51763857 CTATTGTAGCAAAAGCGCGTCCACGTGAGAGCGATTTCAGAAATTCTTCTGATTAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
51763922 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* *
51763981 CTACTGTATCAAAAACGCGTCCACGTGGGAGCGATTT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTT
51764018 TCTTAATAAA
Statistics
Matches: 150, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
123 39 0.26
124 111 0.74
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:51764223 original size:21 final size:21
Alignment explanation
Indices: 51764197--51764237 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51764187 CCTAAAAATC
* *
51764197 CTAAAAACCCTAATCCTAACT
1 CTAAAAACCCAAAACCTAACT
51764218 CTAAAAACCCAAAACCTAAC
1 CTAAAAACCCAAAACCTAAC
51764238 GTGGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (21 bp):
CTAAAAACCCAAAACCTAACT
Found at i:51769216 original size:3 final size:3
Alignment explanation
Indices: 51769210--51769247 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
51769200 GGTTGCAGTG
51769210 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
51769248 TCTCCACATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:51787274 original size:9 final size:9
Alignment explanation
Indices: 51787260--51787299 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
51787250 GTAGTGATTC
51787260 AATTCGGTT
1 AATTCGGTT
51787269 AATTCGGTT
1 AATTCGGTT
51787278 AATTCTGG-T
1 AATTC-GGTT
*
51787287 AATTCAGTT
1 AATTCGGTT
51787296 AATT
1 AATT
51787300 TTTAACAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 25 0.89
10 2 0.07
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:51790687 original size:17 final size:18
Alignment explanation
Indices: 51790658--51790694 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
51790648 TTTTTTTATT
51790658 TTATATAGATATAAATAC
1 TTATATAGATATAAATAC
*
51790676 TTATAT-GATATATATAC
1 TTATATAGATATAAATAC
51790693 TT
1 TT
51790695 TACACTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATATAGATATAAATAC
Found at i:51797439 original size:100 final size:100
Alignment explanation
Indices: 51797284--51798211 Score: 1228
Period size: 100 Copynumber: 9.3 Consensus size: 100
51797274 AAACCATAGT
* * *
51797284 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTTCAGGTGATGCAGCGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* * **
51797349 TTGAAGCTACGACAGCGAATCTCACTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * ** *
51797384 TTGTAATTTAAAAGATTGAAGCCACAGCGGTAAATCTTACATTCCAGGCGGTGCAGCGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
*
51797449 TTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * * *
51797484 TTACAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCAGGTGATGCAGCGAAATAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* * * *
51797549 TTGAAGCTACGACGGCGTATCTTACTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * *
51797584 TTGCAATTAAAAAGATTAAAGCTACAATGACGAATCTTACTTTCCAAGCGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* * *
51797649 TTAAAGTTACAACGGCGAATCTTGTTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *
51797684 TTGCAATTAAAAAGATTGAAGCTACAATGGCTAATCTTACTTTCCAGGCGGTGCAGCGAAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* * * ***
51797749 TTGAAGTTACAACGGAGAATCTTGTTTCATTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
51797784 TTGCAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTTCTAGGCGGTGCAGCGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
51797849 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
51797884 TTGCAATTAAAAAGATTGAAGTTACAATGGCGAATCTTACATTCCAGGCGGTGCAGCGAAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* *
51797949 TTAAAACTACAACGGCGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
51797984 TTGCAATTAAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGAAATAG
1 TTGCAATT-AAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAG
* ** *
51798049 ATTGAAGCTACGACGGCGAATCTCACTTCCTCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * * * *
51798085 TTGCAATTTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCAGGCAGTGCAGCAGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
* *
51798150 TTGAAGCTACAACGGTGAATCTTGCTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
*
51798185 TTACAATTAAAAAGATT-AATGCTACAA
1 TTGCAATTAAAAAGATTGAA-GCTACAA
51798212 GTCAGAACTC
Statistics
Matches: 720, Mismatches: 106, Indels: 4
0.87 0.13 0.00
Matches are distributed among these distances:
99 2 0.00
100 630 0.88
101 88 0.12
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:51798201 original size:50 final size:50
Alignment explanation
Indices: 51797284--51798211 Score: 598
Period size: 50 Copynumber: 18.5 Consensus size: 50
51797274 AAACCATAGT
* ** **
51797284 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTTCAGGTGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTAC-TTCCCTGACA
**** * * * * *
51797335 -TGCAGCGGAACAGATTGAAGCTACGACAGCGAATCTCACTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * * ** * * *
51797384 TTGTAATTTAAAAGATTGAAGCCACAGCGGTAAATCTTACATT-CCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTAC-TTCCCTGACA
* **** * * * *
51797434 GTGCAGCGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * **
51797484 TTACAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCAGGTGA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-TGACA
*** * * *
51797535 -TGCAGCGAAATAGATTGAAGCTACGACGGCGTATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * * * *
51797584 TTGCAATTAAAAAGATTAAAGCTACAATGACGAATCTTACTTTCC-AAGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CA
* * ** * * * ** *
51797634 GTGCAGTGGAACAGATTAAAGTTACAACGGCGAATCTTGTTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * * * *
51797684 TTGCAATTAAAAAGATTGAAGCTACAATGGCTAATCTTACTTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* *** * * * ** **
51797734 GTGCAGCGAAACAGATTGAAGTTACAACGGAGAATCTTGTTTCATTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * *
51797784 TTGCAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTT-TCTAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACA
* **** * * *
51797834 GTGCAGCGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* * * * *
51797884 TTGCAATTAAAAAGATTGAAGTTACAATGGCGAATCTTACATT-CCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTAC-TTCCCTGACA
* *** * * * * *
51797934 GTGCAGCGAAACAGATTAAAACTACAACGGCGAATCTTGCTTCCCCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* *
51797984 TTGCAATTAAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCAGGCGA
1 TTGCAATT-AAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-A
*** * * *
51798036 -TGCAGCGAAATAGATTGAAGCTACGACGGCGAATCTCACTT-CCTCGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACA
* * * * *
51798085 TTGCAATTTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCAGGCA
1 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
* ** * * *
51798135 GTGC-AGCAGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACA
1 TTGCAATTA-AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
*
51798185 TTACAATTAAAAAGATT-AATGCTACAA
1 TTGCAATTAAAAAGATTGAA-GCTACAA
51798212 GTCAGAACTC
Statistics
Matches: 640, Mismatches: 218, Indels: 39
0.71 0.24 0.04
Matches are distributed among these distances:
49 19 0.03
50 569 0.89
51 51 0.08
52 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (50 bp):
TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
Found at i:51799887 original size:17 final size:18
Alignment explanation
Indices: 51799858--51799894 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
51799848 TTTTTTTATT
51799858 TTATATAGATATAAATAC
1 TTATATAGATATAAATAC
*
51799876 TTATAT-GATATATATAC
1 TTATATAGATATAAATAC
51799893 TT
1 TT
51799895 TACACTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATATAGATATAAATAC
Found at i:51805639 original size:9 final size:8
Alignment explanation
Indices: 51805624--51805648 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
51805614 ATGTTACCGG
51805624 GTTTTTTT
1 GTTTTTTT
51805632 GTTTTTTT
1 GTTTTTTT
51805640 GTTTTTTT
1 GTTTTTTT
51805648 G
1 G
51805649 GGGGGGGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (8 bp):
GTTTTTTT
Found at i:51807154 original size:31 final size:31
Alignment explanation
Indices: 51807116--51807177 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
51807106 TGAGACTAGA
51807116 AATGCATGGTTATGCTCAAATAAGTTATTAT
1 AATGCATGGTTATGCTCAAATAAGTTATTAT
51807147 AATGCATGGTTATGCTCAAATAAGTTATTAT
1 AATGCATGGTTATGCTCAAATAAGTTATTAT
51807178 GAGATACCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (31 bp):
AATGCATGGTTATGCTCAAATAAGTTATTAT
Found at i:51808500 original size:31 final size:29
Alignment explanation
Indices: 51808430--51808503 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
51808420 GGCTCAGGTT
* *
51808430 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
51808459 ACGTTTTAGTCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
51808490 ACATTTTAGTCACT
1 ACATTTTAGTCACT
51808504 GAGCCGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:51809093 original size:31 final size:29
Alignment explanation
Indices: 51809030--51809097 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
51809020 TTAACGACTC
*** *
51809030 AGTGACTAAAATGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAAGGCAAACAAA
51809059 AGTGACTAAAATGTAACCTAAGGCAAACAAA
1 AGTGACTAAAATGTAA-C-AAGGCAAACAAA
51809090 AGTGACTA
1 AGTGACTA
51809098 TTTTAGTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 1 0.03
31 16 0.48
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.22
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAAGGCAAACAAA
Found at i:51820777 original size:17 final size:16
Alignment explanation
Indices: 51820757--51820793 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
51820747 CTTCCCCCTC
51820757 TTTTTTTGGGTAATAT
1 TTTTTTTGGGTAATAT
51820773 GTTTTTTTGGGTAATAT
1 -TTTTTTTGGGTAATAT
51820790 TTTT
1 TTTT
51820794 AATTTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.16, C:0.00, G:0.19, T:0.65
Consensus pattern (16 bp):
TTTTTTTGGGTAATAT
Found at i:51821358 original size:24 final size:24
Alignment explanation
Indices: 51821331--51821379 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
51821321 TGATTAAGTT
*
51821331 AATATTAAAATATTTTTATATTAA
1 AATATCAAAATATTTTTATATTAA
51821355 AATATCAAAATATTTTTATATTAA
1 AATATCAAAATATTTTTATATTAA
51821379 A
1 A
51821380 GGATAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AATATCAAAATATTTTTATATTAA
Found at i:51822208 original size:6 final size:6
Alignment explanation
Indices: 51822199--51822228 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
51822189 AAAAACAAAG
51822199 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
51822229 AAAGATAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:51826080 original size:46 final size:45
Alignment explanation
Indices: 51826013--51826227 Score: 232
Period size: 36 Copynumber: 5.1 Consensus size: 45
51826003 TTTGAGTACT
* *
51826013 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
51826059 TCTGATCAAGTGAAAAAGTGAT-A-----AG--T-GCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
51826095 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
51826141 TCTGATTAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
51826177 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
51826222 TCTGAT
1 TCTGAT
51826228 TAGGGACAAA
Statistics
Matches: 141, Mismatches: 9, Indels: 39
0.75 0.05 0.21
Matches are distributed among these distances:
36 57 0.40
37 2 0.01
38 1 0.01
39 2 0.01
40 6 0.04
41 2 0.01
42 4 0.03
43 3 0.02
45 13 0.09
46 51 0.36
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:51826152 original size:82 final size:82
Alignment explanation
Indices: 51826013--51826246 Score: 393
Period size: 82 Copynumber: 2.9 Consensus size: 82
51826003 TTTGAGTACT
* *
51826013 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGAAAAAGT
51826078 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
51826095 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGAAAAAGT
*
51826160 GATAAGTGCTATACTTA
66 GATAAGTGCTACACTTA
* * *
51826177 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATT-AGGGACAAA-T
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGAAAAAGT
51826239 GATAAGTG
66 GATAAGTG
51826247 ATCATACGTA
Statistics
Matches: 146, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
79 9 0.06
80 7 0.05
81 20 0.14
82 110 0.75
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:51829657 original size:23 final size:23
Alignment explanation
Indices: 51829631--51829706 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
51829621 AGTGTTATTG
51829631 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
51829654 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
51829677 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
51829700 ATCAGTG
1 ATCAGTG
51829707 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:51836663 original size:46 final size:45
Alignment explanation
Indices: 51836613--51836832 Score: 246
Period size: 36 Copynumber: 5.3 Consensus size: 45
51836603 ATCAAAAGAT
*
51836613 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAC
*
51836659 AAAGTGAT-A-----AG--T-GCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
*
51836695 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAC
51836741 AAAGTGATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
*
51836777 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
51836821 AAA-TGATAAGTG
1 AAAGTGATAAGTG
51836833 ATCATACGTA
Statistics
Matches: 149, Mismatches: 6, Indels: 41
0.76 0.03 0.21
Matches are distributed among these distances:
36 58 0.39
37 2 0.01
38 1 0.01
39 2 0.01
40 6 0.04
41 2 0.01
42 4 0.03
43 12 0.08
44 8 0.05
45 14 0.09
46 40 0.27
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (45 bp):
AAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAC
Found at i:51836738 original size:82 final size:82
Alignment explanation
Indices: 51836601--51836832 Score: 389
Period size: 82 Copynumber: 2.9 Consensus size: 82
51836591 TGAGTACTTT
* *
51836601 TGATCAAAAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
1 TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
51836666 TAAGTGCTACACTTATC
66 TAAGTGCTACACTTATC
51836683 TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
1 TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
*
51836748 TAAGTGCTATACTTATC
66 TAAGTGCTACACTTATC
* * *
51836765 TGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATC-AGGGACAAA-TGA
1 TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
51836827 TAAGTG
66 TAAGTG
51836833 ATCATACGTA
Statistics
Matches: 144, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
79 9 0.06
80 7 0.05
81 20 0.14
82 108 0.75
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (82 bp):
TGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
TAAGTGCTACACTTATC
Found at i:51840108 original size:16 final size:16
Alignment explanation
Indices: 51840075--51840108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51840065 GGAGATTGTT
* *
51840075 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
51840091 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
51840107 AA
1 AA
51840109 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:51843885 original size:16 final size:17
Alignment explanation
Indices: 51843864--51843898 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51843854 GGAAATATTG
51843864 ATCA-TTTCAATATTTT
1 ATCATTTTCAATATTTT
*
51843880 ATCATTTTGAATATTTT
1 ATCATTTTCAATATTTT
51843897 AT
1 AT
51843899 GTTTTATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (17 bp):
ATCATTTTCAATATTTT
Found at i:51844812 original size:19 final size:20
Alignment explanation
Indices: 51844775--51844813 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51844765 AAGTTGTAAC
*
51844775 AAAAATTTATATTATAAATA
1 AAAAAATTATATTATAAATA
51844795 AAAAAATTATATTA-AAATA
1 AAAAAATTATATTATAAATA
51844814 TTTAGATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAAATTATATTATAAATA
Found at i:51845165 original size:18 final size:18
Alignment explanation
Indices: 51845144--51845210 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 18
51845134 TATATTGATA
51845144 ATTTTTATAGTAATTAAT
1 ATTTTTATAGTAATTAAT
51845162 ATTTTTAAAATTATGTAAATTAAT
1 ATTTTT---A-TA-GT-AATTAAT
*
51845186 ATTTTTATAATAATTAAT
1 ATTTTTATAGTAATTAAT
51845204 ATTTTTA
1 ATTTTTA
51845211 AATTATGTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
18 20 0.48
19 1 0.02
20 2 0.05
21 2 0.05
22 2 0.05
23 2 0.05
24 13 0.31
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
ATTTTTATAGTAATTAAT
Found at i:51845175 original size:24 final size:22
Alignment explanation
Indices: 51845148--51845220 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 22
51845138 TTGATAATTT
51845148 TTATAGTAATTAATATTTTTAAAA
1 TTAT-GTAATTAATATTTTT-AAA
51845172 TTATGTAAATTAATATTTTT--A
1 TTATGT-AATTAATATTTTTAAA
*
51845193 -TA-ATAATTAATATTTTTAAA
1 TTATGTAATTAATATTTTTAAA
51845213 TTATGTAA
1 TTATGTAA
51845221 ATAAACATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
18 13 0.31
19 1 0.02
20 3 0.07
21 3 0.07
22 3 0.07
23 2 0.05
24 17 0.40
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
TTATGTAATTAATATTTTTAAA
Found at i:51845190 original size:42 final size:42
Alignment explanation
Indices: 51845144--51845252 Score: 157
Period size: 41 Copynumber: 2.6 Consensus size: 42
51845134 TATATTGATA
* *
51845144 ATTTTTATAGTAATTAATATTTTTAAAATTATGTAAATTAAT
1 ATTTTTATAGTAATTAATATTTTTAAAATTATGTAAATAAAC
*
51845186 ATTTTTATAATAATTAATATTTTT-AAATTATGTAAATAAAC
1 ATTTTTATAGTAATTAATATTTTTAAAATTATGTAAATAAAC
* * *
51845227 ATTTTTATAGCATTTAATTTTTTTAA
1 ATTTTTATAGTAATTAATATTTTTAA
51845253 TTTAAATTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 35 0.59
42 24 0.41
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (42 bp):
ATTTTTATAGTAATTAATATTTTTAAAATTATGTAAATAAAC
Found at i:51852757 original size:36 final size:40
Alignment explanation
Indices: 51852661--51852757 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
51852651 AACACACTAG
* *
51852661 TTTGGCACCCAGTGCCTCATCGGATAATTCAAAGTAATAA
1 TTTGGCACCCAGTGCCTCATCAGATAAATCAAAGTAATAA
* * * *
51852701 TTTGACACTCAGTGCCTCATCAGCTAAAT-GAAGT-A-AA
1 TTTGGCACCCAGTGCCTCATCAGATAAATCAAAGTAATAA
51852738 -TTGGCACCCAGTGCCTCATC
1 TTTGGCACCCAGTGCCTCATC
51852758 GAATTAATCC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
36 18 0.37
37 2 0.04
38 1 0.02
39 4 0.08
40 24 0.49
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (40 bp):
TTTGGCACCCAGTGCCTCATCAGATAAATCAAAGTAATAA
Found at i:51871381 original size:17 final size:17
Alignment explanation
Indices: 51871348--51871381 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51871338 TTTTAATTTT
**
51871348 ATATAATTTTTTTATAA
1 ATATAATTTTTACATAA
51871365 ATATAATTTTTACATAA
1 ATATAATTTTTACATAA
51871382 TTTATTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATAATTTTTACATAA
Found at i:51872191 original size:20 final size:19
Alignment explanation
Indices: 51872153--51872208 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
51872143 TCTTTCAATA
*
51872153 AAAAT-TTTACAAAAATTT
1 AAAATATTTATAAAAATTT
* *
51872171 AAAATAATTTTTAAAATTTT
1 AAAAT-ATTTATAAAAATTT
51872191 AAAATATTTATAAAAATT
1 AAAATATTTATAAAAATT
51872209 CCAAATTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 5 0.16
19 11 0.35
20 15 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATATTTATAAAAATTT
Found at i:51872252 original size:21 final size:23
Alignment explanation
Indices: 51872227--51872272 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
51872217 TATCTTTTTT
51872227 AAAAA-TTATAAAAT-T-TAAAGA
1 AAAAAGTTA-AAAATATATAAAGA
51872248 AAAAAGTTAAAAATATATAAAGA
1 AAAAAGTTAAAAATATATAAAGA
51872271 AA
1 AA
51872273 GTTAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 4 0.18
23 8 0.36
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (23 bp):
AAAAAGTTAAAAATATATAAAGA
Found at i:51872258 original size:20 final size:19
Alignment explanation
Indices: 51872235--51872282 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
51872225 TTAAAAATTA
51872235 TAAAATTTAAAGAAAAAAGT
1 TAAAATTTAAA-AAAAAAGT
* * *
51872255 TAAAAATATATAAAGAAAGT
1 T-AAAATTTAAAAAAAAAGT
51872275 TAAAATTT
1 TAAAATTT
51872283 TTTAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.26
20 9 0.39
21 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.29
Consensus pattern (19 bp):
TAAAATTTAAAAAAAAAGT
Found at i:51878560 original size:17 final size:17
Alignment explanation
Indices: 51878525--51878562 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
51878515 ATGTTATTAT
*
51878525 TATTTTATTTAATCTAA
1 TATTTTATTTAATCAAA
51878542 TATTTGTATTTAAT-AAA
1 TATTT-TATTTAATCAAA
51878559 TATT
1 TATT
51878563 ATATATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTTTATTTAATCAAA
Found at i:51878569 original size:18 final size:18
Alignment explanation
Indices: 51878525--51878570 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
51878515 ATGTTATTAT
*
51878525 TATTT-TATTTAATCTAA
1 TATTTATATTTAATCAAA
*
51878542 TATTTGTATTTAAT-AAA
1 TATTTATATTTAATCAAA
51878559 TATTATATATTT
1 TATT-TATATTT
51878571 TGGTATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TATTTATATTTAATCAAA
Found at i:51885371 original size:23 final size:23
Alignment explanation
Indices: 51885321--51885365 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
51885311 GCGCTTAAGG
* *
51885321 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
51885344 TGTAATACCCCAAAAATTACTA
1 TGTAATACCCCAAAAATTACTA
51885366 TAGTAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:51888189 original size:3 final size:3
Alignment explanation
Indices: 51888181--51888239 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
51888171 TAATAGCTCC
51888181 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
51888229 ATT ATT ATT AT
1 ATT ATT ATT AT
51888240 ATTCATTCAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:51896556 original size:17 final size:16
Alignment explanation
Indices: 51896514--51896555 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
51896504 CAATATTTTA
*
51896514 TTTTTAATATTAATTT
1 TTTTTAAAATTAATTT
51896530 TTATTTAAAATTAATTT
1 TT-TTTAAAATTAATTT
51896547 TTTTTAAAA
1 TTTTTAAAA
51896556 AATATATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTTAAAATTAATTT
Found at i:51904408 original size:33 final size:33
Alignment explanation
Indices: 51904366--51904648 Score: 163
Period size: 33 Copynumber: 8.6 Consensus size: 33
51904356 AAGATATGGT
*
51904366 GGAATCAGCACTTAGCAACCACCAATGATTCGA
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
*
51904399 GGAATCAGCACTTAGCAACCA-C-----TTGGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
* * * *
51904426 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGT
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T--GATTC-GG
* *
51904468 GGAATCAACACTTAGCAACCAACAATGATTCGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
51904501 GGAATCAGCACTTAGCAACC-CC-----TT-GG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
* * *
51904527 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T--GATTCGG
51904568 TGGAATCAGCACTTAGCAACCACCAATGATTCGG
1 -GGAATCAGCACTTAGCAACCACCAATGATTCGG
*
51904602 GGAATCAGCACTTAGCAACC-CC-----TTGGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
51904629 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
51904649 CCCTTTATAT
Statistics
Matches: 200, Mismatches: 19, Indels: 68
0.70 0.07 0.24
Matches are distributed among these distances:
26 20 0.10
27 49 0.25
28 3 0.01
30 1 0.00
31 1 0.00
32 4 0.02
33 61 0.31
34 8 0.04
36 2 0.01
38 2 0.01
39 4 0.02
40 1 0.00
41 8 0.04
42 36 0.18
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGATTCGG
Found at i:51904528 original size:26 final size:26
Alignment explanation
Indices: 51904499--51904548 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
51904489 ACAATGATTC
51904499 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
51904525 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
51904549 CTTCACATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTT
Found at i:51904581 original size:101 final size:102
Alignment explanation
Indices: 51904321--51904653 Score: 569
Period size: 101 Copynumber: 3.3 Consensus size: 102
51904311 CCAGTGATTC
* * * *
51904321 GGGGAATCAACACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAA-ATACGGTGGAATCAGCACTTAGCAACC
* *
51904386 ACCAATGATTCGAGGAATCAGCACTTAGCAACCACTTG
65 ACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
* *
51904424 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAACACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
*
51904489 ACAATGATTCGGGGAATCAGCACTTAGCAACCCCTT-
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
51904525 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
51904590 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
51904627 GGGGAATCAGCACTTAGCAACCCCCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
51904654 TATATTCAAT
Statistics
Matches: 217, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
101 98 0.45
102 85 0.39
103 34 0.16
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTG
Done.