Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 25 of 196
Found at i:7151919 original size:18 final size:18
Alignment explanation
Indices: 7151882--7151937 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
7151872 TAAAAAATTC
*
7151882 AGAAATATATATAATCTAAA
1 AGAAATATA-A-AATATAAA
7151902 A-AACATATAAAATATAAA
1 AGAA-ATATAAAATATAAA
*
7151920 AGAATTATAAAA-ATAAA
1 AGAAATATAAAATATAAA
7151937 A
1 A
7151938 TTTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
17 6 0.19
18 15 0.47
19 5 0.16
20 6 0.19
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (18 bp):
AGAAATATAAAATATAAA
Found at i:7152273 original size:26 final size:26
Alignment explanation
Indices: 7152200--7152277 Score: 81
Period size: 25 Copynumber: 3.1 Consensus size: 26
7152190 TTTTTTAAAA
*
7152200 TTTAAAATTATATATTTTAGA-ATTT
1 TTTAAAATTATATATTTTAAACATTT
* *
7152225 TATAAAA-AATA-ATTCTTAAACATTT
1 TTTAAAATTATATATT-TTAAACATTT
* *
7152250 TTTAAAATTATATATTATATACATTT
1 TTTAAAATTATATATTTTAAACATTT
7152276 TT
1 TT
7152278 ATATATTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
23 3 0.07
24 7 0.17
25 16 0.38
26 13 0.31
27 3 0.07
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (26 bp):
TTTAAAATTATATATTTTAAACATTT
Found at i:7154053 original size:17 final size:17
Alignment explanation
Indices: 7154033--7154065 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7154023 TATTTAGACA
7154033 TAAATTTAAT-TTTTTTT
1 TAAA-TTAATCTTTTTTT
7154050 TAAATTAATCTTTTTT
1 TAAATTAATCTTTTTT
7154066 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TAAATTAATCTTTTTTT
Found at i:7154063 original size:16 final size:17
Alignment explanation
Indices: 7154033--7154065 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7154023 TATTTAGACA
*
7154033 TAAATTTAATTTTTTTT
1 TAAATTTAATCTTTTTT
7154050 TAAA-TTAATCTTTTTT
1 TAAATTTAATCTTTTTT
7154066 ATATTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TAAATTTAATCTTTTTT
Found at i:7155241 original size:12 final size:11
Alignment explanation
Indices: 7155215--7155295 Score: 61
Period size: 11 Copynumber: 7.9 Consensus size: 11
7155205 ACCAAAAATT
7155215 TATTTT-AAAA
1 TATTTTAAAAA
7155225 -A-TTTAAAAA
1 TATTTTAAAAA
7155234 GTATTTTAAAAA
1 -TATTTTAAAAA
7155246 TATTTT--AAA
1 TATTTTAAAAA
7155255 -A--TTAAAAA
1 TATTTTAAAAA
* **
7155263 TAATAAAAAAA
1 TATTTTAAAAA
7155274 GTATTTTAAAAA
1 -TATTTTAAAAA
7155286 TATTTTAAAA
1 TATTTTAAAA
7155296 TTAAAAAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 19
0.70 0.06 0.24
Matches are distributed among these distances:
6 2 0.04
8 7 0.12
9 9 0.16
11 22 0.39
12 16 0.29
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:7155261 original size:17 final size:17
Alignment explanation
Indices: 7155239--7155325 Score: 57
Period size: 17 Copynumber: 4.8 Consensus size: 17
7155229 AAAAAGTATT
*
7155239 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
**
7155256 TTAAAAATAATAAAAAAAGTA
1 TTAAAAAT-AT-TTAAAA--A
*
7155277 TTTTAAAAATATTTTAAAA
1 -T-TAAAAATATTTAAAAA
*
7155296 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
7155313 ATAAATATATTTA
1 TTAAAAATATTTA
7155326 TTATATAGGG
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
17 32 0.60
18 3 0.06
19 4 0.08
21 4 0.08
22 3 0.06
23 7 0.13
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:7155312 original size:40 final size:40
Alignment explanation
Indices: 7155221--7155313 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
7155211 AATTTATTTT
7155221 AAAAATTT-AAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
7155260 AAATAA-TAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAA-AATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
7155300 AAAAATTTAAAAAA
1 AAAAATTTAAAAAA
7155314 TAAATATATT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
39 6 0.12
40 43 0.88
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (40 bp):
AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:7161684 original size:4 final size:4
Alignment explanation
Indices: 7161675--7161705 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
7161665 AAAAAGTTCA
7161675 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
7161706 AGGTGAGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:7163633 original size:20 final size:19
Alignment explanation
Indices: 7163610--7163688 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 19
7163600 TATTTTTTCT
7163610 AAAATTAAAACATTTATAAA
1 AAAATTAAAA-ATTTATAAA
*
7163630 AAAATTCAAAATTTATATTGTAA
1 AAAATTAAAAATTTATA----AA
* *
7163653 AAAATTATAAAAATTCTAAA
1 AAAATTA-AAAATTTATAAA
*
7163673 AAATATAAAAAATTTA
1 AAA-ATTAAAAATTTA
7163689 AATTTTTAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
19 7 0.15
20 20 0.43
21 3 0.07
23 8 0.17
24 8 0.17
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (19 bp):
AAAATTAAAAATTTATAAA
Found at i:7163684 original size:19 final size:18
Alignment explanation
Indices: 7163650--7163690 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
7163640 ATTTATATTG
7163650 TAAAAAATTATAAAAATT
1 TAAAAAATTATAAAAATT
7163668 CTAAAAAA-TATAAAAAATT
1 -TAAAAAATTAT-AAAAATT
7163687 TAAA
1 TAAA
7163691 TTTTTAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAAATTATAAAAATT
Found at i:7165083 original size:23 final size:23
Alignment explanation
Indices: 7165057--7165108 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
7165047 TGATTTTTAA
*
7165057 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7165080 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7165103 ATTTAG
1 ATTTAG
7165109 GAAAAATCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:7165084 original size:13 final size:13
Alignment explanation
Indices: 7165066--7165108 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7165056 AATTTTGAAT
7165066 TATTTAGTGATAA
1 TATTTAGTGATAA
*
7165079 TATTTA--GA-AT
1 TATTTAGTGATAA
7165089 TATTTAGTGATAA
1 TATTTAGTGATAA
7165102 TATTTAG
1 TATTTAG
7165109 GAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:7165972 original size:19 final size:17
Alignment explanation
Indices: 7165925--7165978 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
7165915 AGGCTAAGCT
* *
7165925 TTTAAAAATATATTTTA
1 TTTACAAATTTATTTTA
*
7165942 TTTACCAATTTATTTTA
1 TTTACAAATTTATTTTA
7165959 TTTACTTAAATTTACTTTTA
1 TTTAC--AAATTTA-TTTTA
7165979 CATTTTCGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 19 0.63
19 6 0.20
20 5 0.17
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTACAAATTTATTTTA
Found at i:7171182 original size:23 final size:23
Alignment explanation
Indices: 7171152--7171195 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7171142 AATGGAGTTA
7171152 GAACACAAGGCATTTTGGGCAAT
1 GAACACAAGGCATTTTGGGCAAT
7171175 GAACACAAGGCATTTTGGGCA
1 GAACACAAGGCATTTTGGGCA
7171196 GTAAAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (23 bp):
GAACACAAGGCATTTTGGGCAAT
Found at i:7172735 original size:23 final size:23
Alignment explanation
Indices: 7172704--7172778 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
7172694 TGATTTTTAA
*
7172704 ATTTTGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
* *
7172727 ACTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAATGATAAT
7172750 ATTTAGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
7172773 ATTTAG
1 ATTTAG
7172779 GAAAAATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAATGATAAT
Found at i:7173601 original size:17 final size:19
Alignment explanation
Indices: 7173581--7173624 Score: 65
Period size: 17 Copynumber: 2.4 Consensus size: 19
7173571 TTTAAAAAAA
7173581 TATTTTATTTAC-T-AATT
1 TATTTTATTTACTTAAATT
7173598 TATTTTATTTACTTAAATT
1 TATTTTATTTACTTAAATT
7173617 TAGTTTTA
1 TA-TTTTA
7173625 CATTTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.50
18 1 0.04
19 6 0.25
20 5 0.21
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTATTTACTTAAATT
Found at i:7177389 original size:48 final size:48
Alignment explanation
Indices: 7177310--7177403 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
7177300 AGGGAATTCT
* *
7177310 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
7177358 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
7177404 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:7184842 original size:23 final size:24
Alignment explanation
Indices: 7184798--7184843 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
7184788 CGTAATTACT
* *
7184798 TTTTTTTTTTGATATTAAATTTGGG
1 TTTTTTTTTTCAAATT-AATTTGGG
7184823 TTTTTTTTTTCAAATT-ATTTG
1 TTTTTTTTTTCAAATTAATTTG
7184844 TGAGAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
25 14 0.74
ACGTcount: A:0.20, C:0.02, G:0.11, T:0.67
Consensus pattern (24 bp):
TTTTTTTTTTCAAATTAATTTGGG
Found at i:7185635 original size:26 final size:26
Alignment explanation
Indices: 7185606--7185659 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
7185596 CAAACTAGAC
7185606 AGTTCCAGAAAAATCACATGTAAGGA
1 AGTTCCAGAAAAATCACATGTAAGGA
7185632 AGTTCCAGAAAAATCACATGTAAGGA
1 AGTTCCAGAAAAATCACATGTAAGGA
7185658 AG
1 AG
7185660 ATATGCTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (26 bp):
AGTTCCAGAAAAATCACATGTAAGGA
Found at i:7190621 original size:3 final size:3
Alignment explanation
Indices: 7190613--7190642 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7190603 TTGCACAACC
7190613 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
7190643 GCCTGAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:7191027 original size:6 final size:6
Alignment explanation
Indices: 7191016--7191049 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
7191006 TACAAACAGT
7191016 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGA
1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGA
7191050 TGAGGCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
AAGAGG
Found at i:7193238 original size:33 final size:35
Alignment explanation
Indices: 7193143--7193239 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
7193133 TTAATATTTT
*
7193143 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
7193178 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
7193211 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
7193240 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:7194476 original size:19 final size:20
Alignment explanation
Indices: 7194439--7194476 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7194429 TTTGGGATTT
*
7194439 GGGGGAAGTAAAATTTTTGA
1 GGGGGAAGTAAAATGTTTGA
7194459 GGGGGAAGTAAAA-GTTTG
1 GGGGGAAGTAAAATGTTTG
7194477 GGGAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.00, G:0.39, T:0.26
Consensus pattern (20 bp):
GGGGGAAGTAAAATGTTTGA
Found at i:7194542 original size:20 final size:18
Alignment explanation
Indices: 7194509--7194545 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
7194499 GTTTTGAGGG
7194509 TTTGGGAGAAGTAAAAGT
1 TTTGGGAGAAGTAAAAGT
7194527 TTTGGAGAGAAAGTAAAAG
1 TTTGG-GAG-AAGTAAAAG
7194546 GTAAAAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (18 bp):
TTTGGGAGAAGTAAAAGT
Found at i:7194552 original size:54 final size:54
Alignment explanation
Indices: 7194462--7194597 Score: 161
Period size: 54 Copynumber: 2.6 Consensus size: 54
7194452 TTTTTGAGGG
* * * *
7194462 GGAAGTAAAAG-TTTGGGGAAAAAATAAAAGGAAAAAAGTTTT-GAGGGTTTGG
1 GGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGGAAAAAAGTTTTGGAGGGTTTGA
* *
7194514 GAGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGGTAAAAAGTTTTGGGGGGTTTGA
1 G-GAAGTAAAAGTTTTGGAGAGAAAGTAAAAGGAAAAAAGTTTTGGAGGGTTTGA
** *
7194569 GGAAGTAAAA-TTTTTTAGAGGAAGTAAAA
1 GGAAGTAAAAGTTTTGGAGAGAAAGTAAAA
7194598 ATTTTGGAGG
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 26 0.36
54 36 0.50
55 9 0.12
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (54 bp):
GGAAGTAAAAGTTTTGGAGAGAAAGTAAAAGGAAAAAAGTTTTGGAGGGTTTGA
Found at i:7194591 original size:19 final size:19
Alignment explanation
Indices: 7194567--7194620 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
7194557 TGGGGGGTTT
7194567 GAGGAAGTAAAATTTTTTA
1 GAGGAAGTAAAATTTTTTA
* *
7194586 GAGGAAGTAAAA-ATTTTG
1 GAGGAAGTAAAATTTTTTA
7194604 GAGGAAAAGTAAAATTT
1 GAGG--AAGTAAAATTT
7194621 AACTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.28
19 12 0.41
20 8 0.28
21 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (19 bp):
GAGGAAGTAAAATTTTTTA
Found at i:7212436 original size:81 final size:81
Alignment explanation
Indices: 7212301--7212467 Score: 325
Period size: 81 Copynumber: 2.1 Consensus size: 81
7212291 AACTCACTGT
7212301 GTAACTCAACAGAAATAGTCATGCAACATACATAAAACTTCTTATATAGTCAGATACAAATTCAG
1 GTAACTCAACAGAAATAGTCATGCAACATACATAAAACTTCTTATATAGTCAGATACAAATTCAG
7212366 ACCTAAGTCCATAATA
66 ACCTAAGTCCATAATA
*
7212382 GTAACTCAACAGAAATAGTCATGCAACATACATAGAACTTCTTATATAGTCAGATACAAATTCAG
1 GTAACTCAACAGAAATAGTCATGCAACATACATAAAACTTCTTATATAGTCAGATACAAATTCAG
7212447 ACCTAAGTCCATAATA
66 ACCTAAGTCCATAATA
7212463 GTAAC
1 GTAAC
7212468 AAATATCATA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.26
Consensus pattern (81 bp):
GTAACTCAACAGAAATAGTCATGCAACATACATAAAACTTCTTATATAGTCAGATACAAATTCAG
ACCTAAGTCCATAATA
Found at i:7216191 original size:14 final size:15
Alignment explanation
Indices: 7216165--7216194 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7216155 ACTGGAGTTC
7216165 TTAGAGTTTCTGTTA
1 TTAGAGTTTCTGTTA
7216180 TTAGAG-TTCTGTTA
1 TTAGAGTTTCTGTTA
7216194 T
1 T
7216195 AATTTAGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (15 bp):
TTAGAGTTTCTGTTA
Found at i:7216396 original size:25 final size:25
Alignment explanation
Indices: 7216330--7216397 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
7216320 TTAGTAATAC
* * *
7216330 ATATGAATTAAGTGTTAAATGAAAT
1 ATATGAATTAAGTGTTTAATCAAAG
* * *
7216355 ATATAAATTAATTGTTTAATCAAGG
1 ATATGAATTAAGTGTTTAATCAAAG
7216380 ATATGAATTAAGTGTTTA
1 ATATGAATTAAGTGTTTA
7216398 TGTTATGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.15, T:0.40
Consensus pattern (25 bp):
ATATGAATTAAGTGTTTAATCAAAG
Found at i:7222904 original size:22 final size:23
Alignment explanation
Indices: 7222875--7222931 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
7222865 TGCACTAATG
7222875 AACAGAGAGCACTA-AAGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
* *
7222897 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
*
7222919 AACGGAGAGCACT
1 AACAGAGAGCACT
7222932 GACATGCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (23 bp):
AACAGAGAGCACTAGAAGTGCTA
Found at i:7222939 original size:22 final size:22
Alignment explanation
Indices: 7222875--7222955 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
7222865 TGCACTAATG
7222875 AACAGAGAGCACT-AAAGTGCTA
1 AACAGAGAGCACTGAAA-TGCTA
* * **
7222897 TACAGAGAGCACAGATGTGCTA
1 AACAGAGAGCACTGAAATGCTA
* *
7222919 AACGGAGAGCACTGACATGCTA
1 AACAGAGAGCACTGAAATGCTA
7222941 GTAATCAGAGAGCAC
1 --AA-CAGAGAGCAC
7222956 CAACGTGCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 33 0.73
23 1 0.02
24 2 0.04
25 9 0.20
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.15
Consensus pattern (22 bp):
AACAGAGAGCACTGAAATGCTA
Found at i:7222952 original size:25 final size:25
Alignment explanation
Indices: 7222923--7222978 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
7222913 GTGCTAAACG
** *
7222923 GAGAGCACTGACATGCTAGTAATCA
1 GAGAGCACCAACATGCTAATAATCA
*
7222948 GAGAGCACCAACGTGCTAATAATCA
1 GAGAGCACCAACATGCTAATAATCA
7222973 GAGAGC
1 GAGAGC
7222979 GCGCTAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (25 bp):
GAGAGCACCAACATGCTAATAATCA
Found at i:7223948 original size:5 final size:5
Alignment explanation
Indices: 7223940--7223968 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7223930 TAATATATTT
7223940 TAATC TAATC TAATC TAATC TAATC TAAT
1 TAATC TAATC TAATC TAATC TAATC TAAT
7223969 ATTTATACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATC
Found at i:7225048 original size:19 final size:19
Alignment explanation
Indices: 7225013--7225052 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7225003 ATCTACAAGA
*
7225013 TAAATATTAAATTTAATAT
1 TAAATATTAAATATAATAT
7225032 TAAACTATTAAA-ATAATAT
1 TAAA-TATTAAATATAATAT
7225051 TA
1 TA
7225053 TTTTTGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATTAAATATAATAT
Found at i:7227997 original size:15 final size:15
Alignment explanation
Indices: 7227952--7227998 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7227942 AGATATTGTT
7227952 TATTAAATTAATTTT-
1 TATTAAA-TAATTTTC
* *
7227967 AATTAATTAATTTTTC
1 TATTAAATAA-TTTTC
7227983 TATTAAATAATTTTC
1 TATTAAATAATTTTC
7227998 T
1 T
7227999 TAACCCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 15 0.58
16 8 0.31
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTAAATAATTTTC
Found at i:7230633 original size:22 final size:22
Alignment explanation
Indices: 7230590--7230633 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7230580 TTCCTTTTCT
*
7230590 TTGTTGTTGTGCTGCCATTTCG
1 TTGTTGTTGTGCTGCCACTTCG
* * *
7230612 TTGTTGTTTTGTTGTCACTTCG
1 TTGTTGTTGTGCTGCCACTTCG
7230634 CTATTATATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.05, C:0.16, G:0.25, T:0.55
Consensus pattern (22 bp):
TTGTTGTTGTGCTGCCACTTCG
Found at i:7233977 original size:15 final size:15
Alignment explanation
Indices: 7233957--7233995 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7233947 TGCTTTGGAG
7233957 GATATTCTTGTTCAT
1 GATATTCTTGTTCAT
*
7233972 GATATTC-TGTTGAT
1 GATATTCTTGTTCAT
*
7233986 TATATTCTTG
1 GATATTCTTG
7233996 AAACTTGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (15 bp):
GATATTCTTGTTCAT
Found at i:7240232 original size:21 final size:21
Alignment explanation
Indices: 7240208--7240247 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7240198 AATGTTTTAC
7240208 GTGGATTCAAATCCCATTAGT
1 GTGGATTCAAATCCCATTAGT
7240229 GTGGATTCAAATCCCATTA
1 GTGGATTCAAATCCCATTA
7240248 TATGCATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (21 bp):
GTGGATTCAAATCCCATTAGT
Found at i:7244866 original size:4 final size:4
Alignment explanation
Indices: 7244857--7244907 Score: 59
Period size: 4 Copynumber: 12.8 Consensus size: 4
7244847 TAAGAACAGA
* * *
7244857 GTAT GTAT GTAT GCT-T GTAT GTAT GCAT GTAG GTAT GCAT GTAT GTAT
1 GTAT GTAT GTAT G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7244905 GTA
1 GTA
7244908 CATGATTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 1 0.03
4 37 0.95
5 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (4 bp):
GTAT
Found at i:7244877 original size:12 final size:12
Alignment explanation
Indices: 7244859--7244905 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
7244849 AGAACAGAGT
7244859 ATGTATGTATGC
1 ATGTATGTATGC
*
7244871 TTGTATGTATGC
1 ATGTATGTATGC
*
7244883 ATGTAGGTATGC
1 ATGTATGTATGC
7244895 ATGTATGTATG
1 ATGTATGTATG
7244906 TACATGATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.28, T:0.43
Consensus pattern (12 bp):
ATGTATGTATGC
Found at i:7246214 original size:62 final size:62
Alignment explanation
Indices: 7246117--7246241 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
7246107 TTGGCCTTGG
7246117 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
7246179 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
7246241 G
1 G
7246242 ATCCTATGTG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (62 bp):
GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
Found at i:7249204 original size:34 final size:37
Alignment explanation
Indices: 7249160--7249249 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 37
7249150 ATCGAAGATT
* *
7249160 GTGATTGTAAATCAACGAATC-GTAAGAAT-A-AACC
1 GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
* * * *
7249194 GTGATCGTAAATCAGC-AAGCTTTAAAAATGACAATC
1 GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
7249230 GTGATCGTAAATCAACGAAT
1 GTGATCGTAAATCAACGAAT
7249250 TGTTAGAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
33 3 0.07
34 20 0.45
35 1 0.02
36 18 0.41
37 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (37 bp):
GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
Found at i:7249236 original size:36 final size:35
Alignment explanation
Indices: 7249193--7249356 Score: 100
Period size: 36 Copynumber: 4.5 Consensus size: 35
7249183 AAGAATAAAC
7249193 CGTGATCGTAAATCAGCAAGCTTTAAAAATGACAAT
1 CGTGATCGTAAATCAGCAAGCTTTAAAAATGA-AAT
* * **
7249229 CGTGATCGTAAATCAACGAA-TTGTTAGAAAACCAAAGGT
1 CGTGATCGTAAATCAGC-AAGCT-TTA-AAAATGAAA--T
* ** * *
7249268 CGTGATCATAAATCAGC-AGACCGTAAGAAT-AAGT
1 CGTGATCGTAAATCAGCAAG-CTTTAAAAATGAAAT
* * * *
7249302 CGTGATTGTAAATCAACGAGCTTTAAAAATGACAGT
1 CGTGATCGTAAATCAGCAAGCTTTAAAAATGA-AAT
* *
7249338 TGTGATTGTAAATCAGCAA
1 CGTGATCGTAAATCAGCAA
7249357 ACTGTTAGAA
Statistics
Matches: 97, Mismatches: 21, Indels: 20
0.70 0.15 0.14
Matches are distributed among these distances:
34 22 0.23
35 3 0.03
36 38 0.39
37 11 0.11
38 7 0.07
39 16 0.16
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (35 bp):
CGTGATCGTAAATCAGCAAGCTTTAAAAATGAAAT
Found at i:7249371 original size:218 final size:216
Alignment explanation
Indices: 7248984--7249608 Score: 774
Period size: 218 Copynumber: 2.9 Consensus size: 216
7248974 ATTGTTGAAG
* * *
7248984 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* * *
7249049 TCGTGATTGA-AAATCAACGGATCGTAAGAATAA-ACTGTGATAATAAATCAACGAGCTTTAAAA
66 TCGTGA-TAATAAATCAGCGGATCGTAAGAATAAGAC-GTGATAGTAAATCAACGAGCTTTAAAA
* *
7249112 ATGACAGTTGTGATCGTAACTCAGAAAACTGCTAGAAAATCGAAGATTGTGATTGTAAATCAACG
129 ATGACAGTTGTGATTGTAAATCAGAAAACTG-TAGAAAATCGAAG-TTGTGATTGTAAATCAACG
*
7249177 AATCGTAAGAATAAACCGTGATCGT
192 AATCGTAAGAATAAACCATGATCGT
* * * * *
7249202 AAATCAGCAAGCTTTAAAAATGACAATCGTGATCGTAAATCAACGAATTGTTAGAAAACCAAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* * * * *
7249267 TCGTGATCATAAATCAGCAGACCGTAAGAATAAGTCGTGATTGTAAATCAACGAGCTTTAAAAAT
66 TCGTGATAATAAATCAGCGGATCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAAT
* * * *
7249332 GACAGTTGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAGGTTGTGATTGTAAATTAGCGTA
131 GACAGTTGTGATTGTAAATCAGAAAACTG-TAGAAAATCGAA-GTTGTGATTGTAAATCAACGAA
* * *
7249397 TTGTAAGAATAAGCCATGATTGT
194 TCGTAAGAATAAACCATGATCGT
* * *
7249420 AAATCAACGAGCTTTAAAAATGATAGTCGTGATCGTAAATTAATGAACTGTTAGAAAACCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* * * * * * *
7249485 TTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGTAAATCAACAAGCTTTAAAAAT
66 TCGTGATAATAAATCAGCGGATCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAAT
* * * ** * *
7249550 GACAATCGTGATTGGAAATCAGTGAACTGTA-AGAAT--AAGTCGTGATTGTAAATCAACGA
131 GACAGTTGTGATTGTAAATCAGAAAACTGTAGAAAATCGAAGTTGTGATTGTAAATCAACGA
7249609 GCTTTAAAAA
Statistics
Matches: 350, Mismatches: 54, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
213 17 0.05
214 2 0.01
216 4 0.01
217 4 0.01
218 321 0.92
219 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (216 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
TCGTGATAATAAATCAGCGGATCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAAT
GACAGTTGTGATTGTAAATCAGAAAACTGTAGAAAATCGAAGTTGTGATTGTAAATCAACGAATC
GTAAGAATAAACCATGATCGT
Found at i:7249380 original size:39 final size:36
Alignment explanation
Indices: 7249092--7249389 Score: 117
Period size: 39 Copynumber: 8.1 Consensus size: 36
7249082 ACTGTGATAA
* * *
7249092 TAAATCAACGAGCTTTAAAAATGACAGTTGTGATCG
1 TAAATCAACAAACTTTAAAAATGACAGTTGTGATTG
* *
7249128 TAACTCAGA-AAACTGCTAGAAAATCGA-AGATTGTGATTG
1 TAAATCA-ACAAACT-TTA-AAAAT-GACAG-TTGTGATTG
* * * *** *
7249167 TAAATCAACGAA-TCGTAAGAAT-A-AACCGTGATCG
1 TAAATCAACAAACT-TTAAAAATGACAGTTGTGATTG
* * * * *
7249201 TAAATCAGCAAGCTTTAAAAATGACAATCGTGATCG
1 TAAATCAACAAACTTTAAAAATGACAGTTGTGATTG
* * ** * * **
7249237 TAAATCAACGAATTGTTAGAAAACCAAAGGTCGTGATCA
1 TAAATCAACAAACT-TTA-AAAATGACA-GTTGTGATTG
* * ** * *
7249276 TAAATCAGCAGACCGTAAGAAT-A-AGTCGTGATTG
1 TAAATCAACAAACTTTAAAAATGACAGTTGTGATTG
* *
7249310 TAAATCAACGAGCTTTAAAAATGACAGTTGTGATTG
1 TAAATCAACAAACTTTAAAAATGACAGTTGTGATTG
*
7249346 TAAATCAGCAAACTGTTAGAAAATCGA-AGGTTGTGATTG
1 TAAATCAACAAACT-TTA-AAAAT-GACA-GTTGTGATTG
7249385 TAAAT
1 TAAAT
7249390 TAGCGTATTG
Statistics
Matches: 194, Mismatches: 50, Indels: 33
0.70 0.18 0.12
Matches are distributed among these distances:
34 44 0.23
35 6 0.03
36 51 0.26
37 16 0.08
38 25 0.13
39 52 0.27
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (36 bp):
TAAATCAACAAACTTTAAAAATGACAGTTGTGATTG
Found at i:7249579 original size:109 final size:109
Alignment explanation
Indices: 7248984--7249571 Score: 683
Period size: 109 Copynumber: 5.4 Consensus size: 109
7248974 ATTGTTGAAG
* *
7248984 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
* * * * **
7249049 TCGTGATTGA-AAATCAACGGATCGTAAGAATAAACTGTGATAAT
66 TTGTGATT-ATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
* * * * *
7249093 AAATCAACGAGCTTTAAAAATGACAGTTGTGATCGTAACTCAGAAAACTGCTAGAAAATCGAAGA
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
* * * *
7249158 TTGTGATTGTAAATCAACGAATCGTAAGAATAAACCGTGATCGT
66 TTGTGATTATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
* * * * * * * *
7249202 AAATCAGCAAGCTTTAAAAATGACAATCGTGATCGTAAATCAACGAATTGTTAGAAAACCAAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
* * * * * *
7249267 TCGTGATCATAAATCAGCAGACCGTAAGAATAAGTCGTGATTGT
66 TTGTGATTATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
* *
7249311 AAATCAACGAGCTTTAAAAATGACAGTTGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
* * * * * *
7249376 TTGTGATTGTAAATTAGCGTATTGTAAGAATAAGCCATGATTGT
66 TTGTGATTATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
* * *** *
7249420 AAATCAACGAGCTTTAAAAATGATAGTCGTGATCGTAAATTAATGAACTGTTAGAAAACCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
* * * *
7249485 TTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGT
66 TTGTGATTATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
* * * *
7249529 AAATCAACAAGCTTTAAAAATGACAATCGTGATTGGAAATCAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAG
7249572 TGAACTGTAA
Statistics
Matches: 401, Mismatches: 77, Indels: 2
0.84 0.16 0.00
Matches are distributed among these distances:
109 401 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (109 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAAGG
TTGTGATTATAAATCAGCGGATCGTAAGAATAAGCCGTGATCGT
Found at i:7249631 original size:36 final size:36
Alignment explanation
Indices: 7249522--7249636 Score: 126
Period size: 36 Copynumber: 3.2 Consensus size: 36
7249512 GAATAAGCCA
*
7249522 TGATCGTAAATCAACAAGCTTTAAAAATGACAATCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
* * ** * * * *
7249558 TGATTGGAAATCAGTGAACTGTAAGAAT-A-AGTCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
*
7249592 TGATTGTAAATCAACGAGCTTTAAAAATGACAATCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
7249628 TGATCGTAA
1 TGATCGTAA
7249637 GAATAAGTTG
Statistics
Matches: 60, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
34 26 0.43
35 2 0.03
36 32 0.53
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (36 bp):
TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
Found at i:7249666 original size:55 final size:55
Alignment explanation
Indices: 7249578--7249691 Score: 183
Period size: 55 Copynumber: 2.1 Consensus size: 55
7249568 TCAGTGAACT
*
7249578 GTAAGAATAAGTCGTGATTGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
1 GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
* ** *
7249633 GTAAGAATAAGTTGTGATCGTAAATCAGTGAGCTTTAAAAATGACAGTCGTGATC
1 GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
7249688 GTAA
1 GTAA
7249692 ATTAGCTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (55 bp):
GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
Found at i:7259328 original size:5 final size:5
Alignment explanation
Indices: 7259318--7259346 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7259308 AATTGTTTTG
7259318 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
7259347 CCTAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:7275015 original size:73 final size:68
Alignment explanation
Indices: 7274877--7275015 Score: 179
Period size: 68 Copynumber: 2.0 Consensus size: 68
7274867 TTCAATAGAT
* **
7274877 TTAATATTAAATTAAATTTAATACTTATCTTAATAGTATTTTATTAATCTAATATTAAAGTGATT
1 TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGATT
7274942 ATC
66 ATC
** *
7274945 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATTAGATTAAATTTAATATTAAAG
1 TTAATATTAAATTAAATTTAATACTTATC-T-TA-AT-AATATTAGATT-AATCTAATATTAAAG
7275010 TGATTA
61 TGATTA
7275016 AGTTTAATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
68 27 0.45
69 1 0.02
70 2 0.03
71 2 0.03
72 8 0.13
73 20 0.33
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.47
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGATT
ATC
Found at i:7277588 original size:22 final size:22
Alignment explanation
Indices: 7277569--7277630 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
7277559 TAAGTTATAA
7277569 TATT-TTATT-TGATATTTTAT
1 TATTATTATTATGATATTTTAT
*
7277589 TATTATTGTTATGATATTTTAT
1 TATTATTATTATGATATTTTAT
* **
7277611 TATTATAATGGTGATATTTT
1 TATTATTATTATGATATTTT
7277631 CAAGGAAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 4 0.11
21 4 0.11
22 27 0.77
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (22 bp):
TATTATTATTATGATATTTTAT
Found at i:7283565 original size:21 final size:22
Alignment explanation
Indices: 7283540--7283583 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
7283530 CACTCTTCCT
7283540 TTTCTTCATCGATTATTGCAGG
1 TTTCTTCATCGATTATTGCAGG
7283562 TTCTTCTTCATCGATTATTGCA
1 -T-TTCTTCATCGATTATTGCA
7283584 CTGTTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (22 bp):
TTTCTTCATCGATTATTGCAGG
Found at i:7283598 original size:24 final size:24
Alignment explanation
Indices: 7283547--7283601 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7283537 CCTTTTCTTC
* *
7283547 ATCGATTATTGCAGGTTCTTCTTC
1 ATCGATTATTGCAGGTTCTACTTA
*
7283571 ATCGATTATTGCACTGTTC-ACTTA
1 ATCGATTATTGCA-GGTTCTACTTA
7283595 ATCGATT
1 ATCGATT
7283602 TCCCTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (24 bp):
ATCGATTATTGCAGGTTCTACTTA
Found at i:7284902 original size:22 final size:22
Alignment explanation
Indices: 7284861--7284949 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
7284851 TTCAATGAAA
7284861 CTGGAAATTG--TTGCATTTGTT
1 CTGGAAATTGTTTTG-ATTTGTT
* *
7284882 -TTGATATTGTTCTTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
*
7284904 CTGGAAATTGTTTTGA-TAGTCT
1 CTGGAAATTGTTTTGATTTGT-T
7284926 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
7284950 AGTGAGTAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
20 7 0.13
21 3 0.06
22 12 0.22
23 24 0.44
24 5 0.09
25 3 0.06
ACGTcount: A:0.18, C:0.08, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:7284949 original size:34 final size:35
Alignment explanation
Indices: 7284899--7285056 Score: 85
Period size: 34 Copynumber: 4.5 Consensus size: 35
7284889 TGTTCTTGAT
* *
7284899 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
* **
7284934 TTGTTCTTG-ATTTGTTAGTGAGTAGAAGATGAAACTGGAAA
1 TTGTTCTTGAATTTGTT-TTGA-TAG--TCTG---CTGGAAA
* * * * * *
7284975 TTG---TTGCATTTGTTTTGATATTGTTCTTG-AT
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
** *
7285006 TTGTTCCGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
7285041 TTGTTCTTG-ATTTGTT
1 TTGTTCTTGAATTTGTT
7285057 AGTGAGTAGA
Statistics
Matches: 87, Mismatches: 24, Indels: 25
0.64 0.18 0.18
Matches are distributed among these distances:
31 4 0.05
32 3 0.03
34 30 0.34
35 20 0.23
36 3 0.03
37 2 0.02
38 8 0.09
39 7 0.08
41 10 0.11
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.47
Consensus pattern (35 bp):
TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
Found at i:7285041 original size:107 final size:107
Alignment explanation
Indices: 7284855--7285084 Score: 451
Period size: 107 Copynumber: 2.1 Consensus size: 107
7284845 GCTGTTTTCA
*
7284855 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
7284920 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
7284962 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
7285027 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
7285069 ATGAAACTGGAAATTG
1 ATGAAACTGGAAATTG
7285085 CAAGTATAGT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 122 1.00
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (107 bp):
ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
Found at i:7289161 original size:44 final size:44
Alignment explanation
Indices: 7289113--7289251 Score: 149
Period size: 44 Copynumber: 3.1 Consensus size: 44
7289103 ATTAAATTAT
7289113 ATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAA
1 ATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAA
* * ** * *
7289157 ATTTATTATCAAGAATTTTATGAAATTATATATCATT-AT-TAA-ATTAT
1 ATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--AA
7289204 ATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAA
1 ATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAA
7289248 ATTT
1 ATTT
7289252 TTATGAAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
43 3 0.04
44 28 0.38
45 8 0.11
46 8 0.11
47 24 0.32
48 3 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (44 bp):
ATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAA
Found at i:7289223 original size:47 final size:47
Alignment explanation
Indices: 7289064--7289215 Score: 172
Period size: 47 Copynumber: 3.3 Consensus size: 47
7289054 TCATATAAGA
*
7289064 ATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
** *
7289111 ATATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATT-AT-TAA-ATT
* * *
7289155 AAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
7289202 ATATTTAATATTAA
1 ATATTTAATATTAA
7289216 TTATTTTAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
43 3 0.04
44 24 0.29
45 8 0.10
46 8 0.10
47 37 0.45
48 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
Found at i:7289262 original size:44 final size:44
Alignment explanation
Indices: 7289049--7289364 Score: 147
Period size: 47 Copynumber: 7.3 Consensus size: 44
7289039 ATGATTTTAG
* *
7289049 TAAATTCATATAAGAATATTTATTATTAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTA-T-A-AATTATT-TTAAATTATA
* * * *
7289096 TATCATT-AT-TAA-ATTATATTTAATATTAATTATTTTAAATTATA
1 TA-AATTCATATAAGA--AAATTTATTATAAATTATTTTAAATTATA
*
7289140 TAAATTCATATAAGAAAATTTATTATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTAT--A-AATTATT-TTAAATTATA
* * * *
7289187 TATCATT-AT-TAA-ATTATATTTAATATTAATTATTTTAAATTATA
1 TA-AATTCATATAAGA--AAATTTATTATAAATTATTTTAAATTATA
*
7289231 TAAATTCATATAAGAAAATTT-TTATGAAATTA---TATATTAT-
1 TAAATTCATATAAGAAAATTTATTAT-AAATTATTTTAAATTATA
* * *
7289271 TAAATT-ATAT-------TTAATAAT-AATTATATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATAAATTATTTTAAATTATA
* *
7289306 CAAATTCATATAAGAAAATTTATTACTAATAATTATTTTAAATTTTA
1 TAAATTCATATAAGAAAATTTATTA-T-A-AATTATTTTAAATTATA
7289353 TTAAA-TCATATA
1 -TAAATTCATATA
7289365 TTTTAATTAA
Statistics
Matches: 204, Mismatches: 28, Indels: 74
0.67 0.09 0.24
Matches are distributed among these distances:
31 5 0.02
32 2 0.01
33 3 0.01
34 7 0.03
35 5 0.02
36 4 0.02
39 4 0.02
40 6 0.03
41 7 0.03
43 14 0.07
44 54 0.26
45 12 0.06
46 11 0.05
47 61 0.30
48 9 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (44 bp):
TAAATTCATATAAGAAAATTTATTATAAATTATTTTAAATTATA
Found at i:7289272 original size:75 final size:78
Alignment explanation
Indices: 7289172--7289326 Score: 262
Period size: 75 Copynumber: 2.0 Consensus size: 78
7289162 TTATCAAGAA
* * *
7289172 TTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
7289237 CATATAAGAAAAT
66 CATATAAGAAAAT
7289250 TTTTATGAAA-T-TATAT-ATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
7289312 CATATAAGAAAAT
66 CATATAAGAAAAT
7289325 TT
1 TT
7289327 ATTACTAATA
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
75 58 0.78
76 5 0.07
77 1 0.01
78 10 0.14
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (78 bp):
TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
CATATAAGAAAAT
Found at i:7289275 original size:15 final size:15
Alignment explanation
Indices: 7289252--7289305 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
7289242 AAGAAAATTT
*
7289252 TTATGAAATTATATA
1 TTATTAAATTATATA
7289267 TTATTAAATTATAT-
1 TTATTAAATTATATA
* *
7289281 TTAAT-AATAAT-TA
1 TTATTAAATTATATA
7289294 -TATTAAATTATA
1 TTATTAAATTATA
7289306 CAAATTCATA
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 10 0.32
14 4 0.13
15 13 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
TTATTAAATTATATA
Found at i:7289280 original size:91 final size:91
Alignment explanation
Indices: 7289049--7289255 Score: 389
Period size: 91 Copynumber: 2.3 Consensus size: 91
7289039 ATGATTTTAG
* *
7289049 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
7289114 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
7289140 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
7289205 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
7289231 TAAATTCATATAAGAAAATTT-TTAT
1 TAAATTCATATAAGAAAATTTATTAT
7289256 GAAATTATAT
Statistics
Matches: 114, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 4 0.04
91 110 0.96
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:7289293 original size:91 final size:91
Alignment explanation
Indices: 7289049--7289297 Score: 353
Period size: 91 Copynumber: 2.7 Consensus size: 91
7289039 ATGATTTTAG
* * * *
7289049 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCAATAATAAATTATA
7289114 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
* *
7289140 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCAATAATAAATTATA
7289205 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
* * *
7289231 TAAATTCATATAAGAAAATTT-TTATGAA-ATTATATATTATTAAATTATAT-TTAATAAT-AAT
1 TAAATTCATATAAGAAAATTTATTATCAAGA--AT-T-TTATGAAATTATATATCAATAATAAAT
7289292 TATATT
62 TATATT
7289298 AAATTATACA
Statistics
Matches: 147, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
89 1 0.01
90 6 0.04
91 121 0.82
92 6 0.04
93 13 0.09
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCAATAATAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:7289375 original size:75 final size:74
Alignment explanation
Indices: 7289172--7289358 Score: 227
Period size: 75 Copynumber: 2.5 Consensus size: 74
7289162 TTATCAAGAA
* * * *
7289172 TTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATT
1 TTTTAT-AAA-TA-ATAT-ATTATTAAATTATATTAAATAATAATTATATTAAATTATACAAATT
7289237 CATATAAGAAAAT
62 CATATAAGAAAAT
* *
7289250 TTTTATGAAATTATATATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATTCAT
1 TTTTAT-AAATAATATATTATTAAATTATATTAAATAATAATTATATTAAATTATACAAATTCAT
7289315 ATAAGAAAAT
65 ATAAGAAAAT
*
7289325 TTATTACT-AATAAT-TATT-TTAAATTTTATTAAAT
1 TT-TTA-TAAATAATATATTATTAAATTATATTAAAT
7289359 CATATATTTT
Statistics
Matches: 100, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
73 14 0.14
74 4 0.04
75 63 0.63
76 7 0.07
77 2 0.02
78 10 0.10
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.49
Consensus pattern (74 bp):
TTTTATAAATAATATATTATTAAATTATATTAAATAATAATTATATTAAATTATACAAATTCATA
TAAGAAAAT
Found at i:7289420 original size:59 final size:57
Alignment explanation
Indices: 7289357--7289765 Score: 214
Period size: 61 Copynumber: 6.9 Consensus size: 57
7289347 ATTTTATTAA
7289357 ATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTATTT-AAA-TATATTTTATAGT
* * * * * * *
7289416 ATCATATATTATGATTTTAGTAAAT-TCATATAAGAA-TATTGATTATTAAGA-ATTTTATTA-A
1 ATCATATATT-TTA-ATTA--AAATAT-ATTTAATAATTATT-ATT-TAAATATATTTTA-TAGT
*
7289477 ATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAA-TATATTTTATAGT
* * * * * * *
7289536 ATCATATATTATGATTTGAGTAAAT-TCATATAAGAA-TATTGATTATTAAGA-ATTTTATTA-A
1 ATCATATATT-TTAATT-A--AAATAT-ATTTAATAATTATT-ATT-TAAATATATTTTA-TAGT
* *
7289597 AACATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TT-AAATATATTTTATAGT
* * * * * * *
7289656 ATCATATATTATGATTTGAGTAAAT-TCATATAAGAA-TATTGATTATTAAGA-ATTTTATTA-A
1 ATCATATATT-TTAATT-A--AAATAT-ATTTAATAATTATT-ATT-TAAATATATTTTA-TAGT
* *
7289717 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA-ATAT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAATATAT
7289766 GATTAAATTA
Statistics
Matches: 262, Mismatches: 48, Indels: 82
0.67 0.12 0.21
Matches are distributed among these distances:
56 1 0.00
57 48 0.18
58 23 0.09
59 46 0.18
60 20 0.08
61 51 0.19
62 26 0.10
63 46 0.18
64 1 0.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATAATTATTATTTAAATATATTTTATAGT
Found at i:7289481 original size:61 final size:61
Alignment explanation
Indices: 7289416--7289726 Score: 264
Period size: 61 Copynumber: 5.2 Consensus size: 61
7289406 ATTTTATAGT
*
7289416 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * * * * *
7289477 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATCTTA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAA-TAT-TGATTATTAAGAATTTTATTA-A
*
7289536 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * * * * *
7289597 AACATATATTTTAATTAAAATATATTTA-ATAATAAT-TATG-TTA-AAATATATTTTA-TAGT
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATAT-TGATTATTAAGA-ATTTTATTA-A
*
7289656 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
7289717 ATTATATATT
1 ATCATATATT
7289727 TTAATTAAAA
Statistics
Matches: 185, Mismatches: 49, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
58 9 0.05
59 63 0.34
60 32 0.17
61 72 0.39
62 9 0.05
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (61 bp):
ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:7289623 original size:16 final size:17
Alignment explanation
Indices: 7289587--7289621 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7289577 ATTATTAAGA
7289587 ATTTTATTAAAACATAT
1 ATTTTATTAAAACATAT
*
7289604 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAACATAT
7289622 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTTATTAAAACATAT
Found at i:7289735 original size:18 final size:17
Alignment explanation
Indices: 7289707--7289741 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7289697 ATTATTAAGA
*
7289707 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7289724 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7289742 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7289762 original size:120 final size:120
Alignment explanation
Indices: 7289346--7289765 Score: 761
Period size: 120 Copynumber: 3.5 Consensus size: 120
7289336 AATTATTTTA
* *
7289346 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTCAAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAAATATATTT
*
7289410 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7289466 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTT
7289531 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
7289586 AATTTTATTAAAACATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTT
7289651 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
7289706 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATAT
7289766 GATTAAATTA
Statistics
Matches: 292, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 290 0.99
121 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:7300121 original size:19 final size:22
Alignment explanation
Indices: 7300097--7300146 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
7300087 GTTTTCCTAC
7300097 AAAAAT-AA-AATAA-AATAGG
1 AAAAATAAATAATAATAATAGG
7300116 AAAAATAAATAATAATAATAGG
1 AAAAATAAATAATAATAATAGG
7300138 AAAAA-AAAT
1 AAAAATAAAT
7300147 TTCTTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
21 9 0.32
22 11 0.39
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
AAAAATAAATAATAATAATAGG
Found at i:7307237 original size:29 final size:32
Alignment explanation
Indices: 7307205--7307264 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 32
7307195 TCTTTGCTTC
*
7307205 TTTCTTCAATTT-GGCCC-AATTGT-TTCCTT
1 TTTCTTCAATTTAGCCCCAAATTGTATTCCTT
*
7307234 TTTCTTCTATTTAGCCCCAAATTGTATTCCT
1 TTTCTTCAATTTAGCCCCAAATTGTATTCCT
7307265 GCACAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 11 0.42
30 4 0.15
31 6 0.23
32 5 0.19
ACGTcount: A:0.17, C:0.25, G:0.08, T:0.50
Consensus pattern (32 bp):
TTTCTTCAATTTAGCCCCAAATTGTATTCCTT
Found at i:7316213 original size:90 final size:93
Alignment explanation
Indices: 7316047--7316244 Score: 260
Period size: 90 Copynumber: 2.2 Consensus size: 93
7316037 TTAAGGGTGT
* * *
7316047 AAAAA-ACCCTCAAACGTTTAAAAAAAAAAGTAACTAAGCCCCTCCTATTTTTTTTTTGCACTCA
1 AAAAAGACCCTCAAACG-TTAAAAAAAAAAGCAACTAAGCCCCTACTATATTTTTTTTGCACTCA
* *
7316111 ATTGAGCACTTGAGCTTTCAAAATGTATC
65 ATTGAGCACTTGAACTTTCAAAATGCATC
** * *
7316140 AAAAAGACCCTCAAAC-TTATTAAAAAAAGCAACTAAGTCCTTACT-TATTTTTTTT-CACTCAA
1 AAAAAGACCCTCAAACGTTAAAAAAAAAAGCAACTAAGCCCCTACTATATTTTTTTTGCACTCAA
* *
7316202 TTGGGTACTTGAACTTTCAAAATGCATC
66 TTGAGCACTTGAACTTTCAAAATGCATC
7316230 AAAAAGACCCTCAAA
1 AAAAAGACCCTCAAA
7316245 AATTTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
90 46 0.49
91 9 0.10
92 23 0.25
93 5 0.05
94 10 0.11
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (93 bp):
AAAAAGACCCTCAAACGTTAAAAAAAAAAGCAACTAAGCCCCTACTATATTTTTTTTGCACTCAA
TTGAGCACTTGAACTTTCAAAATGCATC
Found at i:7316330 original size:9 final size:9
Alignment explanation
Indices: 7316314--7316421 Score: 53
Period size: 10 Copynumber: 11.8 Consensus size: 9
7316304 AATTAAAAAG
7316314 TATAAAATT
1 TATAAAATT
*
7316323 TATTAAATTT
1 TA-TAAAATT
7316333 TAATAAAATT
1 T-ATAAAATT
*
7316343 TA-AAAAAT
1 TATAAAATT
7316351 T-TAAAATT
1 TATAAAATT
*
7316359 TATTAAAAAT
1 TA-TAAAATT
**
7316369 TATAATTTTTT
1 TATAA--AATT
7316380 TATAAAATT
1 TATAAAATT
** *
7316389 CGTAAAA-A
1 TATAAAATT
*
7316397 TA-AAAAAT
1 TATAAAATT
7316405 TATAAAATTT
1 TATAAAA-TT
7316415 TATAAAA
1 TATAAAA
7316422 ATCATAAAAA
Statistics
Matches: 72, Mismatches: 17, Indels: 19
0.67 0.16 0.18
Matches are distributed among these distances:
7 4 0.06
8 14 0.19
9 17 0.24
10 30 0.42
11 7 0.10
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.43
Consensus pattern (9 bp):
TATAAAATT
Found at i:7316334 original size:10 final size:10
Alignment explanation
Indices: 7316315--7316354 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
7316305 ATTAAAAAGT
7316315 ATAAAATTTA
1 ATAAAATTTA
* *
7316325 TTAAATTTTA
1 ATAAAATTTA
7316335 ATAAAATTTA
1 ATAAAATTTA
7316345 A-AAAATTTA
1 ATAAAATTTA
7316354 A
1 A
7316355 AATTTATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
ATAAAATTTA
Found at i:7316418 original size:46 final size:43
Alignment explanation
Indices: 7316299--7316420 Score: 120
Period size: 46 Copynumber: 2.7 Consensus size: 43
7316289 AAAATATATA
*
7316299 TAAAAAATTAAAAAGTATAAAATTTATTAAATTTTAATAAAATT
1 TAAAAAATTAAAAATTATAAAATTTA-TAAATTTTAATAAAATT
* * * *
7316343 TAAAAAATTTAAAATTTATTAAAAATTATAATTTTTTTATAAAATT
1 TAAAAAA-TTAAAAATTA-TAAAATTTATAA-ATTTTAATAAAATT
*
7316389 CGT-AAAAATAAAAAATTATAAAATTTTATAAA
1 --TAAAAAATTAAAAATTATAAAA-TTTATAAA
7316421 AATCATAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
44 7 0.11
45 16 0.25
46 34 0.54
47 5 0.08
48 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (43 bp):
TAAAAAATTAAAAATTATAAAATTTATAAATTTTAATAAAATT
Found at i:7316433 original size:36 final size:36
Alignment explanation
Indices: 7316363--7316431 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
7316353 AAAATTTATT
** * *
7316363 AAAAATTATAATTTTTTTATAAAATTCGTAAAAATA
1 AAAAATTATAATAATTTTATAAAAATCATAAAAATA
7316399 AAAAATTATAA-AATTTTATAAAAATCATAAAAA
1 AAAAATTATAATAATTTTATAAAAATCATAAAAA
7316432 ATTTTAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 18 0.62
36 11 0.38
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (36 bp):
AAAAATTATAATAATTTTATAAAAATCATAAAAATA
Found at i:7316703 original size:10 final size:10
Alignment explanation
Indices: 7316690--7316716 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7316680 TTTTTACGAT
7316690 TTTTATAAAA
1 TTTTATAAAA
7316700 TTTTATAAAA
1 TTTTATAAAA
7316710 TTTTATA
1 TTTTATA
7316717 TTTTTTACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:7316775 original size:28 final size:29
Alignment explanation
Indices: 7316743--7316806 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
7316733 TTTTTTCTAA
*
7316743 TTTTATT-AAATTT-TTAATATTTGA-ATTC
1 TTTTATTAAAATTTAATAATATTT-ATA-TC
7316771 TTTTATTAAAATTTAATAATATTTATATC
1 TTTTATTAAAATTTAATAATATTTATATC
7316800 TTTTATT
1 TTTTATT
7316807 GTTTTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.22
29 16 0.50
30 9 0.28
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
TTTTATTAAAATTTAATAATATTTATATC
Found at i:7316995 original size:86 final size:87
Alignment explanation
Indices: 7316858--7317037 Score: 249
Period size: 86 Copynumber: 2.1 Consensus size: 87
7316848 AAGCATGGAG
* * * * *
7316858 TTAATTGCTTTTTTTGAAAAGTTTGAGGATCTTTTTGATGCATTTTGAAAGTTCAAGTACCGAAT
1 TTAATTGCATTTTTTGAAAAGTTTGAGGAGCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAAA
7316923 TGAGTGCAAAAAAAAAGTAGGGGC
66 TGAGTG--AAAAAAAAGTAGGGGC
* *
7316947 TTAATTGCATTTTTT-AAGA-TTTGAGG-GCTTTTTTATGCATTTTAAAAGTTCAAGTACCCAAA
1 TTAATTGCATTTTTTGAAAAGTTTGAGGAGCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAAA
*
7317009 TGAGTGGAAAAAAAGTAGGGGC
66 TGAGTGAAAAAAAAGTAGGGGC
7317031 TTAATTG
1 TTAATTG
7317038 TTTCTTTTTT
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
84 22 0.27
86 37 0.45
87 7 0.08
88 3 0.04
89 14 0.17
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.37
Consensus pattern (87 bp):
TTAATTGCATTTTTTGAAAAGTTTGAGGAGCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAAA
TGAGTGAAAAAAAAGTAGGGGC
Found at i:7320350 original size:21 final size:20
Alignment explanation
Indices: 7320306--7320351 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 20
7320296 TTGGGTCTTT
7320306 TATAAAAATAATACAAAAAA
1 TATAAAAATAATACAAAAAA
7320326 -ATAAAAA-AATACCAAAATAA
1 TATAAAAATAATA-CAAAA-AA
7320346 TATAAA
1 TATAAA
7320352 CTTTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 2 0.09
21 5 0.22
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
TATAAAAATAATACAAAAAA
Found at i:7320912 original size:9 final size:10
Alignment explanation
Indices: 7320886--7320918 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7320876 TAAAAAAAAG
7320886 TTTATATTAT
1 TTTATATTAT
7320896 TTTGATATT-T
1 TTT-ATATTAT
7320906 TTTATATTAT
1 TTTATATTAT
7320916 TTT
1 TTT
7320919 TGTAAAAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 5 0.24
10 11 0.52
11 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTATATTAT
Found at i:7328363 original size:27 final size:26
Alignment explanation
Indices: 7328333--7328383 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7328323 TTTCCATGGG
7328333 TAAAATCATCAAAAATTTTACTAGGAT
1 TAAAATCATC-AAAATTTTACTAGGAT
**
7328360 TAAAATTGTCAAAATTTTACTAGG
1 TAAAATCATCAAAATTTTACTAGG
7328384 GTAAAATAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (26 bp):
TAAAATCATCAAAATTTTACTAGGAT
Found at i:7329965 original size:26 final size:25
Alignment explanation
Indices: 7329918--7329966 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7329908 TCCAAAAGCA
* *
7329918 TTAATAGTTAATTTGCTTGATTATG
1 TTAATAGTTAATTTGATAGATTATG
7329943 TTAATAGTTAAGTTTGATAGATTA
1 TTAATAGTTAA-TTTGATAGATTA
7329967 AGGGGGAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (25 bp):
TTAATAGTTAATTTGATAGATTATG
Found at i:7335511 original size:16 final size:16
Alignment explanation
Indices: 7335492--7335524 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7335482 TTCATGTTAC
*
7335492 TTTGGTTATCCTTTGT
1 TTTGCTTATCCTTTGT
7335508 TTTGCTTATCCTTTGT
1 TTTGCTTATCCTTTGT
7335524 T
1 T
7335525 ATATTGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTGCTTATCCTTTGT
Found at i:7337814 original size:33 final size:33
Alignment explanation
Indices: 7337777--7337845 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
7337767 TTTAAATTAT
* * * *
7337777 ATTTTATAGTATTATGTATTATGATTTTAGTAA
1 ATTTTATAGTATCATATAGTATGATTTGAGTAA
7337810 ATTTTATAGTATCATATAGTATGATTTGAGTAA
1 ATTTTATAGTATCATATAGTATGATTTGAGTAA
7337843 ATT
1 ATT
7337846 CATATAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.51
Consensus pattern (33 bp):
ATTTTATAGTATCATATAGTATGATTTGAGTAA
Found at i:7337907 original size:16 final size:17
Alignment explanation
Indices: 7337871--7337905 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7337861 ATTATTAAGA
7337871 ATTTTATTAAAATATAT
1 ATTTTATTAAAATATAT
7337888 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7337906 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7338121 original size:44 final size:45
Alignment explanation
Indices: 7338071--7338160 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
7338061 TTTCTATTCT
*
7338071 ATTCAACCAAACACAAGA-TTACTATTACGCCTCTATTCCATTAC
1 ATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTAC
*** *
7338115 ATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTAC
1 ATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTAC
7338160 A
1 A
7338161 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 15 0.38
45 25 0.62
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (45 bp):
ATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTAC
Found at i:7338160 original size:16 final size:16
Alignment explanation
Indices: 7338139--7338198 Score: 102
Period size: 16 Copynumber: 3.8 Consensus size: 16
7338129 TTGATTTGCT
7338139 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
7338155 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
7338171 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
7338187 ATTACGCCTCTA
1 ATTACACCTCTA
7338199 ATCTAATACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.27, C:0.37, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:7338180 original size:32 final size:32
Alignment explanation
Indices: 7338139--7338201 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
7338129 TTGATTTGCT
7338139 ATTACACCTCTATTCCATTACACCTCTAATCC
1 ATTACACCTCTATTCCATTACACCTCTAATCC
*
7338171 ATTACACCTCTATTCCATTACGCCTCTAATC
1 ATTACACCTCTATTCCATTACACCTCTAATC
7338202 TAATACAGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.37, G:0.02, T:0.35
Consensus pattern (32 bp):
ATTACACCTCTATTCCATTACACCTCTAATCC
Found at i:7340406 original size:16 final size:16
Alignment explanation
Indices: 7340372--7340424 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
7340362 ATGACATCAG
7340372 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
7340388 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
7340404 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
7340420 TCATG
1 TCATG
7340425 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:7340658 original size:40 final size:41
Alignment explanation
Indices: 7340614--7340697 Score: 125
Period size: 41 Copynumber: 2.1 Consensus size: 41
7340604 CTAGTTTGGA
* *
7340614 ACCCAGTGCCTCATCGGAT-AATTCGAAGTAGTAAATTGAC
1 ACCCAGTGCCTCATCGAATAAATCCGAAGTAGTAAATTGAC
* *
7340654 ACCCAGTGTCTTATCGAATAAATCCGAAGTAGTAAATTGAC
1 ACCCAGTGCCTCATCGAATAAATCCGAAGTAGTAAATTGAC
7340695 ACC
1 ACC
7340698 ACAAACACAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 16 0.41
41 23 0.59
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (41 bp):
ACCCAGTGCCTCATCGAATAAATCCGAAGTAGTAAATTGAC
Found at i:7341637 original size:12 final size:12
Alignment explanation
Indices: 7341622--7341656 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
7341612 GTCTTTCTCC
7341622 TTTCTTTCTTTT
1 TTTCTTTCTTTT
7341634 TTTCCTTT-TTTT
1 TTT-CTTTCTTTT
7341646 TTTCTTTCTTT
1 TTTCTTTCTTT
7341657 CATTTCTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.19
12 13 0.62
13 4 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTCTTTCTTTT
Found at i:7341687 original size:33 final size:28
Alignment explanation
Indices: 7341621--7341689 Score: 75
Period size: 33 Copynumber: 2.3 Consensus size: 28
7341611 TGTCTTTCTC
7341621 CTTTCTTTCTTTTTTTCCTTTTTTTTTT
1 CTTTCTTTCTTTTTTTCCTTTTTTTTTT
*
7341649 CTTTCTTTCATTTCTGTTTCGTTTTGTTTGTTT
1 CTTTCTTTC-TTT-T-TTTCCTTTT-TTT-TTT
*
7341682 GTTTCTTT
1 CTTTCTTT
7341690 ATTCATTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 9 0.26
29 3 0.09
30 1 0.03
31 8 0.24
32 3 0.09
33 10 0.29
ACGTcount: A:0.01, C:0.16, G:0.07, T:0.75
Consensus pattern (28 bp):
CTTTCTTTCTTTTTTTCCTTTTTTTTTT
Found at i:7341752 original size:20 final size:20
Alignment explanation
Indices: 7341714--7341752 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7341704 TTGTTTTGTT
*
7341714 TTATTATATTTACTTTATTA
1 TTATTATATTTACTATATTA
7341734 TTATTATATTATA-TATATT
1 TTATTATATT-TACTATATT
7341753 TACTTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATTATATTTACTATATTA
Found at i:7348946 original size:12 final size:13
Alignment explanation
Indices: 7348931--7348997 Score: 56
Period size: 12 Copynumber: 5.6 Consensus size: 13
7348921 TTTAATGAAT
7348931 TTAATATTATAT-
1 TTAATATTATATA
7348943 TTAAT-TTA-ATA
1 TTAATATTATATA
*
7348954 TTGATA-TATATA
1 TTAATATTATATA
* *
7348966 TTAATATGAGATA
1 TTAATATTATATA
*
7348979 TTAA-ATTAAAT-
1 TTAATATTATATA
7348990 TTAATATT
1 TTAATATT
7348998 TATCTAGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 2 0.05
11 13 0.30
12 21 0.48
13 8 0.18
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (13 bp):
TTAATATTATATA
Found at i:7348969 original size:18 final size:17
Alignment explanation
Indices: 7348928--7348972 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7348918 TATTTTAATG
*
7348928 AATTTAATATTATATTT
1 AATTTAATATTATATAT
7348945 AATTTAATATTGATATAT
1 AATTTAATATT-ATATAT
7348963 -ATATTAATAT
1 AAT-TTAATAT
7348973 GAGATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTTAATATTATATAT
Found at i:7352468 original size:4 final size:4
Alignment explanation
Indices: 7352459--7352485 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7352449 TTTTTGATTT
7352459 ATTA ATTA ATTA ATTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATT
7352486 GAAGTTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:7362228 original size:19 final size:19
Alignment explanation
Indices: 7362204--7362241 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7362194 GAAGACGGGC
*
7362204 AAAACAAGAAGACCTAAAA
1 AAAACAAGAAAACCTAAAA
*
7362223 AAAACAGGAAAACCTAAAA
1 AAAACAAGAAAACCTAAAA
7362242 GCTTGTCAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.16, G:0.11, T:0.05
Consensus pattern (19 bp):
AAAACAAGAAAACCTAAAA
Found at i:7362845 original size:21 final size:21
Alignment explanation
Indices: 7362806--7362854 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
7362796 AATTTTAAAA
*
7362806 TATAGATTTAATTTTAATTTTT
1 TATA-ATTTAATTTTAATTTAT
7362828 TATAATTT-ATTTTGAATTTAT
1 TATAATTTAATTTT-AATTTAT
7362849 TA-AATT
1 TATAATT
7362855 ATGGGTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 9 0.36
21 12 0.48
22 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (21 bp):
TATAATTTAATTTTAATTTAT
Found at i:7364556 original size:25 final size:25
Alignment explanation
Indices: 7364489--7364579 Score: 87
Period size: 24 Copynumber: 3.6 Consensus size: 25
7364479 TTAAGTATAA
* * *
7364489 ATTAAAATTAATTACAAATAATTATT
1 ATTAATATTAAATAAAAATAATTA-T
* * * *
7364515 ATAAAAATTAAATAAAAGT-TTTAT
1 ATTAATATTAAATAAAAATAATTAT
7364539 ATTAATATTAAATAAAAATAATTAT
1 ATTAATATTAAATAAAAATAATTAT
7364564 ATTAATA-TAAACTAAA
1 ATTAATATTAAA-TAAA
7364580 CTAAAATCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
24 21 0.39
25 18 0.33
26 15 0.28
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (25 bp):
ATTAATATTAAATAAAAATAATTAT
Found at i:7364674 original size:24 final size:25
Alignment explanation
Indices: 7364643--7364697 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
7364633 CCCCACCTGC
* *
7364643 CCCTCTCCTC-TCCCCTACCTCTC-T
1 CCCTCTCCCCTTCCCCT-CCTCCCGT
7364667 CCCTCTCCCCTTCCCCTCCTCCCGT
1 CCCTCTCCCCTTCCCCTCCTCCCGT
7364692 CCCTCT
1 CCCTCT
7364698 GTTATGGTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.02, C:0.65, G:0.02, T:0.31
Consensus pattern (25 bp):
CCCTCTCCCCTTCCCCTCCTCCCGT
Found at i:7367583 original size:3 final size:3
Alignment explanation
Indices: 7367515--7367565 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
7367505 TATTTTCTCC
*
7367515 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
7367561 TTA TT
1 TTA TT
7367566 GGTATTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7370060 original size:24 final size:24
Alignment explanation
Indices: 7370033--7370078 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7370023 AAAACAATCC
* *
7370033 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
7370057 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
7370079 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:7370894 original size:13 final size:13
Alignment explanation
Indices: 7370876--7370900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7370866 ATTATTAATA
7370876 TTATTTTGTGTGT
1 TTATTTTGTGTGT
7370889 TTATTTTGTGTG
1 TTATTTTGTGTG
7370901 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:7372596 original size:41 final size:41
Alignment explanation
Indices: 7372551--7372712 Score: 245
Period size: 41 Copynumber: 4.0 Consensus size: 41
7372541 AAATTATTCA
*
7372551 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
* * *
7372592 GACTATACGTCTATCAGGCTAAATGCCGGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
7372633 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCAG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATC-G
* * *
7372675 G-CTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAAT
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAAT
7372713 TAAACTATAA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
41 110 0.98
42 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
Found at i:7372725 original size:41 final size:41
Alignment explanation
Indices: 7372548--7372747 Score: 240
Period size: 41 Copynumber: 4.9 Consensus size: 41
7372538 GTGAAATTAT
*
7372548 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
7372589 TCGGACTATACGTCTATCAGGCTAAATGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
7372630 TCGGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
7372671 TCAGGCTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * * * *
7372712 TTAAACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATACGTCTAGCAGGCT-AAGTGCCGGTGAA
7372748 TCTGTTTAAA
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 1 0.01
41 140 0.99
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (41 bp):
TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:7375670 original size:20 final size:22
Alignment explanation
Indices: 7375627--7375696 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 22
7375617 TTTAAAATAC
*
7375627 TTTTAAAATACTTTTTTTTTAATTT
1 TTTTAAAATAC---TTTTTAAATTT
7375652 TTTTAAAA-A-TTTTTAAATTT
1 TTTTAAAATACTTTTTAAATTT
*
7375672 TTTTAAAATACTTTTTAAAATT
1 TTTTAAAATACTTTTTAAATTT
7375694 TTT
1 TTT
7375697 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 18 0.44
21 1 0.02
22 13 0.32
24 1 0.02
25 8 0.20
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTAAAATACTTTTTAAATTT
Found at i:7375673 original size:31 final size:30
Alignment explanation
Indices: 7375651--7375718 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 30
7375641 TTTTTTAATT
7375651 TTTTTAAAAATTTTTAAATTTTTTTAAAATAC
1 TTTTT-AAAATTTTT-AATTTTTTTAAAATAC
7375683 TTTTTAAAATTTTTAA---TTTTAAAATA-
1 TTTTTAAAATTTTTAATTTTTTTAAAATAC
7375709 TTTTTAAAAT
1 TTTTTAAAAT
7375719 ACTTTTTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.28
27 10 0.28
30 2 0.06
31 9 0.25
32 5 0.14
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTTTAAAATTTTTAATTTTTTTAAAATAC
Found at i:7375696 original size:10 final size:10
Alignment explanation
Indices: 7375640--7375696 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
7375630 TAAAATACTT
* *
7375640 TTTTTTTAAT
1 TTTTTTAAAA
7375650 TTTTTTAAAA
1 TTTTTTAAAA
* *
7375660 ATTTTTAAAT
1 TTTTTTAAAA
7375670 TTTTTTAAAA
1 TTTTTTAAAA
7375680 TACTTTTTAAAA
1 T--TTTTTAAAA
7375692 TTTTT
1 TTTTT
7375697 AATTTTAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 29 0.74
12 10 0.26
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:7375715 original size:11 final size:11
Alignment explanation
Indices: 7375613--7375725 Score: 77
Period size: 11 Copynumber: 9.6 Consensus size: 11
7375603 TTTTATTTTT
7375613 TATTTTTAAAA
1 TATTTTTAAAA
*
7375624 TACTTTTAAAA
1 TATTTTTAAAA
**
7375635 TACTTTTTTTTTAA
1 TA---TTTTTAAAA
*
7375649 TTTTTTTAAAA
1 TATTTTTAAAA
7375660 -ATTTTT-AAA
1 TATTTTTAAAA
*
7375669 TTTTTTTAAAA
1 TATTTTTAAAA
7375680 TACTTTTTAAAA
1 TA-TTTTTAAAA
*
7375692 TTTTTAATTTTAAAA
1 ----TATTTTTAAAA
7375707 TATTTTTAAAA
1 TATTTTTAAAA
7375718 TACTTTTT
1 TA-TTTTT
7375726 TTAATTTTTG
Statistics
Matches: 79, Mismatches: 12, Indels: 21
0.71 0.11 0.19
Matches are distributed among these distances:
9 3 0.04
10 10 0.13
11 35 0.44
12 14 0.18
14 7 0.09
15 8 0.10
16 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:7376071 original size:10 final size:11
Alignment explanation
Indices: 7376052--7376080 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
7376042 GAAAGTGATA
7376052 AAAAAGAAAAG
1 AAAAAGAAAAG
7376063 AAAAA-AAAAG
1 AAAAAGAAAAG
7376073 AAAAAGAA
1 AAAAAGAA
7376081 GAGGCCAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:7378558 original size:661 final size:658
Alignment explanation
Indices: 7377313--7378633 Score: 2279
Period size: 661 Copynumber: 2.0 Consensus size: 658
7377303 TCGACAGCGA
7377313 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
7377378 TCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
7377443 GGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
131 GGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
7377508 ATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
196 ATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
*
7377573 GTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
261 GTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
*
7377638 TAATTCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
326 TAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
* *
7377703 TAGTAGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGTC
391 CAGTAGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCC
* * *
7377768 AGTAATTCTACTTCTCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
456 AATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
* * * *
7377833 AGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTATATTGAAG
521 AGTAGTGGAGCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAG
* * * * *
7377898 CCAGTAATTCTA-CTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-
586 CCAGCAATCCTATC-TCCCTGGACAACAGTGAAATAGATTAAAGA--TAAG-TCTTATCTCCCTG
7377961 AAGTAGTAGTGG
647 AAGTAGTAGTGG
**
7377973 AGCAGGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATGGTGGAGTACATTGAAGCCAGTAA
1 AGCAGG-TCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
* *
7378038 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAG
7378103 TGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGT
130 TGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGT
7378168 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
195 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
* *
7378233 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
260 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCA
*
7378298 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAAGCA
325 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
* *
7378363 GCAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGC
390 GCAGTAGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGC
7378428 CAATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG
455 CAATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG
* *
7378493 CAGCT-GTGGAGTAGATCGAAAATGGTGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGA
520 CAG-TAGTGGAGCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGA
* ** *
7378557 AGCCAGCAATCCTATCTCCCTGGTCAGTAGTGAAATAGGTTAAAGATAAGTCTTATCTCCCTGAA
584 AGCCAGCAATCCTATCTCCCTGGACAACAGTGAAATAGATTAAAGATAAGTCTTATCTCCCTGAA
*
7378622 GTTGTAGTGG
649 GTAGTAGTGG
7378632 AG
1 AG
7378634 TAGATTGAAG
Statistics
Matches: 625, Mismatches: 32, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
658 12 0.02
659 16 0.03
660 6 0.01
661 589 0.94
662 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (658 bp):
AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
ATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
TAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
CAGTAGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCC
AATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAG
CCAGCAATCCTATCTCCCTGGACAACAGTGAAATAGATTAAAGATAAGTCTTATCTCCCTGAAGT
AGTAGTGG
Found at i:7378603 original size:132 final size:132
Alignment explanation
Indices: 7377313--7378579 Score: 2241
Period size: 132 Copynumber: 9.6 Consensus size: 132
7377303 TCGACAGCGA
* *
7377313 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
7377378 TCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7377443 GG
131 GG
7377445 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
7377510 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7377575 GG
131 GG
* * *
7377577 AGCAGATCGAAGATGGTGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7377642 TCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
7377707 AG
131 GG
* * *
7377709 AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGTCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7377774 TCTACTTCTCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7377839 GG
131 GG
*
7377841 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTATATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7377906 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7377971 GG
131 GG
*
7377973 AGCAGGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATGGTGGAGTACATTGAAGCCAGTAA
1 AGCA-GATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAA
7378038 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
7378103 TGG
130 TGG
7378106 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
7378171 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7378236 GG
131 GG
7378238 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
7378303 TCTACTTCCCTGGACAACAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAAGCAGCAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7378368 GG
131 GG
* *
7378370 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7378435 TCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGCT-G
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG-TAG
7378499 TGG
130 TGG
* * * * * *
7378502 AGTAGATCGAAAATGGTGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGCAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7378567 CCTA-TCTCCCTGG
66 TCTACT-TCCCTGG
7378580 TCAGTAGTGA
Statistics
Matches: 1089, Mismatches: 43, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 959 0.88
133 129 0.12
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:7379876 original size:3 final size:3
Alignment explanation
Indices: 7379823--7379858 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
7379813 TATTTTCTCC
*
7379823 TTA TTA TTA TTA TTA TTA TTA TTGA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TT
7379859 GGTATTGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 28 0.93
4 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7382445 original size:19 final size:19
Alignment explanation
Indices: 7382421--7382459 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7382411 TGCTTAGAAC
7382421 TAAACTGATTCAACCACTA
1 TAAACTGATTCAACCACTA
7382440 TAAACTGATTCAACCACTA
1 TAAACTGATTCAACCACTA
7382459 T
1 T
7382460 CACATTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (19 bp):
TAAACTGATTCAACCACTA
Found at i:7388879 original size:36 final size:35
Alignment explanation
Indices: 7388787--7388879 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 35
7388777 ACTCTCTATT
* * *
7388787 TTGGTGTGTTTTGGTTAGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
* * * *
7388822 TTTGTGTGTTTCGGATGGATTGGCTCTTATGAACA
1 TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
7388857 TCTGGTGTGTTTTGGTTAGATTG
1 T-TGGTGTGTTTTGGTTAGATTG
7388880 TCGATGTACT
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
35 29 0.63
36 17 0.37
ACGTcount: A:0.15, C:0.10, G:0.30, T:0.45
Consensus pattern (35 bp):
TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
Found at i:7389581 original size:19 final size:19
Alignment explanation
Indices: 7389557--7389631 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
7389547 AATTTTTGAG
7389557 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7389576 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7389595 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
7389616 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
7389632 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7389603 original size:21 final size:21
Alignment explanation
Indices: 7389558--7389620 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
7389548 ATTTTTGAGG
7389558 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
7389577 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
7389598 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
7389619 AT
1 AT
7389621 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:7389664 original size:22 final size:23
Alignment explanation
Indices: 7389622--7389664 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7389612 ATATGATATG
*
7389622 TAATCTTAGAAGATATGATTTTA
1 TAATCTTAGAAGATATAATTTTA
*
7389645 TAATCTTAG-AGATTTAATTT
1 TAATCTTAGAAGATATAATTT
7389665 GTAGATACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (23 bp):
TAATCTTAGAAGATATAATTTTA
Found at i:7389774 original size:13 final size:14
Alignment explanation
Indices: 7389756--7389788 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7389746 ATTGTAAAAA
7389756 AGAAAAAGAGG-GG
1 AGAAAAAGAGGAGG
7389769 AGAAAAAGAGGAGG
1 AGAAAAAGAGGAGG
7389783 A-AAAAA
1 AGAAAAA
7389789 AAAAGAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (14 bp):
AGAAAAAGAGGAGG
Done.