Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 27 of 196
Found at i:7649029 original size:21 final size:22
Alignment explanation
Indices: 7649005--7649070 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 22
7648995 TCTGATTTAA
7649005 GGGTT-GTGATTTAGGGGTTAT
1 GGGTTAGTGATTTAGGGGTTAT
* * *
7649026 GGGTTAGTG-GTTAGAGGTTAA
1 GGGTTAGTGATTTAGGGGTTAT
* * *
7649047 GAGTTAGGGATTTAGGGTTTAT
1 GGGTTAGTGATTTAGGGGTTAT
7649069 GG
1 GG
7649071 ATTCGGTGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (22 bp):
GGGTTAGTGATTTAGGGGTTAT
Found at i:7649175 original size:89 final size:89
Alignment explanation
Indices: 7649058--7649257 Score: 276
Period size: 89 Copynumber: 2.2 Consensus size: 89
7649048 AGTTAGGGAT
* * * * *
7649058 TTAGGGTTTATGGATTCGGTGTGAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATT
1 TTAGGGGTTAGGGATTCGGGGTGAGGTTAGGGTTTAGGATTTAGATTAATCAGTGTGTTTTAATT
*
7649123 TATATAATAAATAATGTTTAGGGG
66 TATATAATAAATAAGGTTTAGGGG
* *
7649147 TTAGGGGTTAGGGATTCGGGGTCG-GGTTAGGGTTTATGATTTAGATTAATCAGTGTTTTTTAAT
1 TTAGGGGTTAGGGATTCGGGGT-GAGGTTAGGGTTTAGGATTTAGATTAATCAGTGTGTTTTAAT
*
7649211 TTATATATTAAATAAGGTTTAGGGG
65 TTATATAATAAATAAGGTTTAGGGG
* * *
7649236 TTAGTGGTTAGGGGTTTGGGGT
1 TTAGGGGTTAGGGATTCGGGGT
7649258 TAAGAGTTAG
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
89 97 0.99
90 1 0.01
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.42
Consensus pattern (89 bp):
TTAGGGGTTAGGGATTCGGGGTGAGGTTAGGGTTTAGGATTTAGATTAATCAGTGTGTTTTAATT
TATATAATAAATAAGGTTTAGGGG
Found at i:7651225 original size:19 final size:19
Alignment explanation
Indices: 7651200--7651310 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
7651190 AATCTTCAAG
7651200 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7651219 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
7651238 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7651257 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
7651276 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7651295 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
7651311 AGATATGATT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 83 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7651250 original size:38 final size:38
Alignment explanation
Indices: 7651207--7651310 Score: 181
Period size: 38 Copynumber: 2.7 Consensus size: 38
7651197 AAGGATATGC
*
7651207 AATCTTAGATATAATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7651245 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7651283 AATCTTAGATATGATATGTAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
7651311 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:7651336 original size:22 final size:21
Alignment explanation
Indices: 7651200--7651336 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
7651190 AATCTTCAAG
*
7651200 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
7651219 AATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
7651238 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7651257 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7651276 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
7651295 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
7651317 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
7651337 TTAATTTGTA
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
19 80 0.77
22 12 0.12
23 12 0.12
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:7651343 original size:22 final size:23
Alignment explanation
Indices: 7651299--7651343 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7651289 AGATATGATA
*
7651299 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
7651322 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
7651344 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:7651871 original size:19 final size:17
Alignment explanation
Indices: 7651847--7651892 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 17
7651837 TTCTTTATTT
7651847 TTTATTAATTAGTTTTATA
1 TTTATT-ATT-GTTTTATA
*
7651866 TTTATTATTTTTTTATA
1 TTTATTATTGTTTTATA
7651883 TTTAATTATT
1 TTT-ATTATT
7651893 TTAAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 10 0.40
18 9 0.36
19 6 0.24
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTATTATTGTTTTATA
Found at i:7651881 original size:17 final size:18
Alignment explanation
Indices: 7651859--7651894 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
7651849 TATTAATTAG
7651859 TTTTATATTT-ATTATTT
1 TTTTATATTTAATTATTT
7651876 TTTTATATTTAATTATTT
1 TTTTATATTTAATTATTT
7651894 T
1 T
7651895 AAAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTATATTTAATTATTT
Found at i:7651894 original size:15 final size:15
Alignment explanation
Indices: 7651841--7651895 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
7651831 TTCATTTTCT
*
7651841 TTATTTTTTA-TTAA
1 TTATTTTATATTTAA
7651855 TTAGTTTTATATTTATTA
1 TTA-TTTTATATTTA--A
*
7651873 TTTTTTTATATTTAA
1 TTATTTTATATTTAA
7651888 TTATTTTA
1 TTATTTTA
7651896 AAAAAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 3 0.09
15 14 0.41
16 3 0.09
17 11 0.32
18 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTTTATATTTAA
Found at i:7651964 original size:22 final size:21
Alignment explanation
Indices: 7651935--7651997 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7651925 ATACGCATAT
*
7651935 TTATTTTTTGTAGTATAATATAA
1 TTATTTTTTATA-TAT-ATATAA
* *
7651958 TTATTTTTTATTTATATGTAA
1 TTATTTTTTATATATATATAA
* *
7651979 TTATTTTTTTTATCTATAT
1 TTATTTTTTATATATATAT
7651998 GTATATATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 20 0.61
22 3 0.09
23 10 0.30
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (21 bp):
TTATTTTTTATATATATATAA
Found at i:7651988 original size:23 final size:23
Alignment explanation
Indices: 7651952--7652013 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
7651942 TTGTAGTATA
*
7651952 ATATAATTATTTTTTATTTATATGT
1 ATAT-ATT-TTTTTTATCTATATGT
7651977 A-ATTATTTTTTTTATCTATATGT
1 ATA-TATTTTTTTTATCTATATGT
*
7652000 ATATATTTATTTTA
1 ATATATTTTTTTTA
7652014 GTATACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 26 0.79
24 5 0.15
25 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (23 bp):
ATATATTTTTTTTATCTATATGT
Found at i:7652080 original size:23 final size:23
Alignment explanation
Indices: 7652054--7652107 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 23
7652044 TTTTAACTAA
*
7652054 TTTTTATATATATG-AACATATAT
1 TTTTTATATAAATGCAA-ATATAT
7652077 TTTTT-T-TAAATGCAAATATAT
1 TTTTTATATAAATGCAAATATAT
7652098 TTTTTATATA
1 TTTTTATATA
7652108 CTTTATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 16 0.59
22 4 0.15
23 7 0.26
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTTATATAAATGCAAATATAT
Found at i:7656806 original size:1 final size:1
Alignment explanation
Indices: 7656795--7656850 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
7656785 GTTCAGATTC
* * * * * *
7656795 AAAAAACAAAAAAAAAATAAAAAAAAGAAAAAAAAAAGAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7656851 GCAAAAGGAG
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.02, G:0.07, T:0.02
Consensus pattern (1 bp):
A
Found at i:7656820 original size:20 final size:20
Alignment explanation
Indices: 7656795--7656856 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
7656785 GTTCAGATTC
*
7656795 AAAAAACAAAAAAAAAATAA
1 AAAAAACAAAAAAAAAAGAA
*
7656815 AAAAAAGAAAAAAAAAAGAA
1 AAAAAACAAAAAAAAAAGAA
* *
7656835 AAAAGA-AAAAGAAAAAGCAA
1 AAAAAACAAAAAAAAAAG-AA
7656855 AA
1 AA
7656857 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.27
20 27 0.73
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.02
Consensus pattern (20 bp):
AAAAAACAAAAAAAAAAGAA
Found at i:7656856 original size:7 final size:6
Alignment explanation
Indices: 7656816--7656857 Score: 59
Period size: 6 Copynumber: 7.0 Consensus size: 6
7656806 AAAAAATAAA
*
7656816 AAAAAG AAAAA- AAAAAG AAAAAAG AAAAAG AAAAAG CAAAAG
1 AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG
7656858 GAGAGGCCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
5 5 0.15
6 22 0.67
7 6 0.18
ACGTcount: A:0.83, C:0.02, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:7656857 original size:18 final size:18
Alignment explanation
Indices: 7656803--7656856 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 18
7656793 TCAAAAAACA
*
7656803 AAAAAAAAATAAAAAAAAG
1 AAAAAAAAA-AGAAAAAAG
7656822 AAAAAAAAAAGAAAAAAG
1 AAAAAAAAAAGAAAAAAG
7656840 AAAAAGAAAAAGCAAAA
1 AAAAA-AAAAAG-AAAA
7656857 GGAGAGGCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 13 0.41
19 15 0.47
20 4 0.12
ACGTcount: A:0.87, C:0.02, G:0.09, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAAG
Found at i:7658205 original size:23 final size:23
Alignment explanation
Indices: 7658179--7658300 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
7658169 ATAAGTGCAA
7658179 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
7658202 CACTGTTATGTAGTCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7658225 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7658248 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7658271 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7658294 CACTGAT
1 CACTGAT
7658301 CAATAACACT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:7658246 original size:46 final size:46
Alignment explanation
Indices: 7658179--7658298 Score: 204
Period size: 46 Copynumber: 2.6 Consensus size: 46
7658169 ATAAGTGCAA
* *
7658179 CACTGATATGTAGCCGAAGCTACCACTGTTATGTAGTCAAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
*
7658225 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
*
7658271 CACTGAAACGTAGCCGAAGCTACCACTG
1 CACTGAAATGTAGCCGAAGCTACCACTG
7658299 ATCAATAACA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
Found at i:7660973 original size:44 final size:44
Alignment explanation
Indices: 7660919--7661123 Score: 132
Period size: 44 Copynumber: 4.7 Consensus size: 44
7660909 ACAGTAGAAT
* *
7660919 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
1 AGATTGAAGATGTCAGATCTTACCTCCCTAAGCAGTAGTGGAGC
* * * * * * *
7660963 AGATCGAAGATGGCGGATTTTACCTCCCTATGGTTA-TAGTGGAGT
1 AGATTGAAGATGTCAGATCTTACCTCCCTA-AG-CAGTAGTGGAGC
* * ** ** **
7661008 ACATTGAAGCCA-GT-A-AT-TCTACTTCCCTGGGCAACAGTGGAAT
1 AGATTGAAG--ATGTCAGATCT-TACCTCCCTAAGCAGTAGTGGAGC
* *
7661051 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
1 AGATTGAAGATGTCAGATCTTACCTCCCTAAGCAGTAGTGGAGC
* * *
7661095 AGATCGAAGATGACAGATTTTACCTCCCT
1 AGATTGAAGATGTCAGATCTTACCTCCCT
7661124 GTGGTTATAG
Statistics
Matches: 118, Mismatches: 33, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 19 0.16
44 76 0.64
45 17 0.14
46 2 0.02
47 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATTGAAGATGTCAGATCTTACCTCCCTAAGCAGTAGTGGAGC
Found at i:7661871 original size:132 final size:132
Alignment explanation
Indices: 7660828--7661854 Score: 1673
Period size: 132 Copynumber: 7.8 Consensus size: 132
7660818 TTAACAGCGA
* * *
7660828 AGCAGATCGAAGATGGCGGATTTTACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
7660893 TCTACTTCTCTGGACAACAGTAGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7660958 GG
131 GG
* * *
7660960 AGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
7661025 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7661090 GG
131 GG
* *
7661092 AGCAGATCGAAGATGACAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * *
7661157 TCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCTTTAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7661222 GG
131 GG
* *
7661224 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
7661289 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGGTATTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7661354 GG
131 GG
7661356 AGCAGATCGAAGATGGC-GAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 AGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
* * *
7661420 TTCTACTTCCGTGGACAACAGTGGAATAGATTGAAGATTTCAGGTATTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
7661485 TGG
130 TGG
*
7661488 AGCAGATCGAAGATGGCAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
7661553 TCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7661618 GG
131 GG
* * * * * *
7661620 AGCATATCGAAGATGGAAGATTTTACCTCTCTGTAGTTATAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
7661685 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCTTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7661750 GG
131 GG
* *
7661752 AGCAGATCGAAGATGGAAAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * *
7661816 TCATA-TCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 TC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
7661855 GTAAGTCCTA
Statistics
Matches: 844, Mismatches: 47, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
131 4 0.00
132 840 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:7662207 original size:19 final size:19
Alignment explanation
Indices: 7662183--7662293 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
7662173 AATCTTCAGG
7662183 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7662202 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
7662221 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7662240 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
7662259 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7662278 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
7662294 AGATATGATT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 83 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7662233 original size:38 final size:38
Alignment explanation
Indices: 7662190--7662293 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
7662180 AGGGATATGC
7662190 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7662228 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7662266 AATCTTAGATATGATATGTAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
7662294 AGATATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:7662319 original size:22 final size:21
Alignment explanation
Indices: 7662183--7662319 Score: 123
Period size: 19 Copynumber: 6.9 Consensus size: 21
7662173 AATCTTCAGG
*
7662183 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7662202 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
7662221 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7662240 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7662259 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
7662278 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
7662300 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
7662320 TTAATTTGTA
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
19 80 0.77
22 12 0.12
23 12 0.12
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:7662326 original size:22 final size:23
Alignment explanation
Indices: 7662282--7662326 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7662272 AGATATGATA
*
7662282 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
7662305 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
7662327 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:7662845 original size:16 final size:15
Alignment explanation
Indices: 7662826--7662877 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
7662816 ATTTTCTTTA
*
7662826 TTTTTTATTAATTAG
1 TTTTTTATTAATTAT
* *
7662841 TTTTTTATTTATTCT
1 TTTTTTATTAATTAT
7662856 TTTTTATATTTAATTAT
1 TTTTT-TA-TTAATTAT
7662873 TTTTT
1 TTTTT
7662878 AAAAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 17 0.57
16 2 0.07
17 11 0.37
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTTTTATTAATTAT
Found at i:7662947 original size:25 final size:25
Alignment explanation
Indices: 7662916--7662996 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
7662906 ATACGCATAT
*
7662916 TTATTTTTT-TGTAGTATA-ATATAA
1 TTATTTTTTATTTA-TATATATATAA
* *
7662940 TTATTTTTTATTTATTTATATGTAA
1 TTATTTTTTATTTATATATATATAA
* * *
7662965 TTATTTTTTATCTATATGTATATAT
1 TTATTTTTTATTTATATATATATAA
7662990 TTATTTT
1 TTATTTT
7662997 AGTATACATA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
24 12 0.26
25 35 0.74
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (25 bp):
TTATTTTTTATTTATATATATATAA
Found at i:7663062 original size:21 final size:22
Alignment explanation
Indices: 7663038--7663089 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
7663028 TTTTAACTAA
*
7663038 TTTTTATATATATG-AACATAT
1 TTTTTATATAAATGAAACATAT
*
7663059 TTTTT-T-TAAATGCAAATATAT
1 TTTTTATATAAATG-AAACATAT
7663080 TTTTTATATA
1 TTTTTATATA
7663090 CTTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 5 0.20
20 1 0.04
21 16 0.64
22 1 0.04
23 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTTTATATAAATGAAACATAT
Found at i:7664126 original size:57 final size:57
Alignment explanation
Indices: 7664036--7664151 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
7664026 AACTTGTAGA
7664036 CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
1 CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
* *
7664093 CCAAAGCCGTTTTTTTAGGTGATCCAATCACACCTTAATAAAATATTGGTGGCGACT
1 CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
7664150 CC
1 CC
7664152 CAATTTTCAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (57 bp):
CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
Found at i:7676313 original size:335 final size:335
Alignment explanation
Indices: 7675677--7676335 Score: 982
Period size: 335 Copynumber: 2.0 Consensus size: 335
7675667 CTAATGCTAC
* *
7675677 TAAGGCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTTAGGTTTCCACTAA
1 TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
* * *
7675742 AAACCACAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTTCCAAAATTAGGGTGT
66 AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
* * *
7675807 CCAGCACCTTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAATGGCCAA
131 CCAACACCTTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAACGACCAA
7675872 ACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTAA
196 ACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTAA
* * * * *
7675937 TGGACCACTCCCGATGGTCGACCTAGAATTTGTTCGCTATCATCCTGGTCTAACACCACCAGTTT
261 TGGACCACTCCCGATGGTCAACCCAGAACTTGTTCGCTATCAACCTGGTCCAACACCACCAGTTT
7676002 CGCATTCGAG
326 CGCATTCGAG
* * * *
7676012 TAAGCCAGGCCAATACTTTTAATCACTCTATCAGCTTTTAATCCACTAATTCAGGTTTCTA-TTA
1 TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
* * *
7676076 AAACTAAAACACAAGGATCTACTTCGCGTAAATACTTCTTCATAATTCTGCCAAAATTAAGGTGT
66 AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
* * * *
7676141 GCAACACCTTGGTAGTTCCATACAAAAATTCTTGACATTATAAATATCAGAATTAGAAACGACCA
131 CCAACACCTTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAG-AACGACCA
* * * *
7676206 AACCTTTGAGGGCACCATTACTCATCAGAT-GAATCGTCTATGAGTGTTGCATCGCTTTCACCCT
195 AACCTTTGAAGGCACCATTACTCATCAAATGGAAT-GTCCATGAGTGTTGCATCACTTTCACCCT
** **
7676270 GGTGGACCACTCTTGATGGTCAACCCAGAACTTG-TCTGCTATCAACCTGGTCCAACACCACCAG
259 AATGGACCACTCCCGATGGTCAACCCAGAACTTGTTC-GCTATCAACCTGGTCCAACACCACCAG
7676334 TT
323 TT
7676336 CCATATTCCC
Statistics
Matches: 289, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
334 118 0.41
335 171 0.59
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (335 bp):
TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
CCAACACCTTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAACGACCAA
ACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTAA
TGGACCACTCCCGATGGTCAACCCAGAACTTGTTCGCTATCAACCTGGTCCAACACCACCAGTTT
CGCATTCGAG
Found at i:7683046 original size:21 final size:22
Alignment explanation
Indices: 7683020--7683062 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7683010 TTAAAGCTAG
*
7683020 TTGAAAT-CTAAATTTGAATTA
1 TTGAAATAATAAATTTGAATTA
7683041 TTGAAATAATAAATTTGAATTA
1 TTGAAATAATAAATTTGAATTA
7683063 ATTTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
TTGAAATAATAAATTTGAATTA
Found at i:7683154 original size:8 final size:8
Alignment explanation
Indices: 7683141--7683168 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7683131 TATGAATTTT
7683141 AATTTTAA
1 AATTTTAA
7683149 AATTTTAA
1 AATTTTAA
7683157 AATTTTAA
1 AATTTTAA
7683165 AATT
1 AATT
7683169 CAAATCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AATTTTAA
Found at i:7684265 original size:16 final size:17
Alignment explanation
Indices: 7684234--7684270 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7684224 GATGCCCGGT
7684234 AATGTGTTAGTTTTTTTA
1 AATGTGTTA-TTTTTTTA
7684252 AATGTGTT-TTTTTTTA
1 AATGTGTTATTTTTTTA
7684268 AAT
1 AAT
7684271 TTAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
18 8 0.42
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (17 bp):
AATGTGTTATTTTTTTA
Found at i:7685799 original size:21 final size:22
Alignment explanation
Indices: 7685775--7685815 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7685765 TACAAATAAT
* *
7685775 AATTCTTGT-TTATTTTGTTTG
1 AATTCTCGTATTATTGTGTTTG
7685796 AATTCTCGTATTATTGTGTT
1 AATTCTCGTATTATTGTGTT
7685816 AATATCATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.61
Consensus pattern (22 bp):
AATTCTCGTATTATTGTGTTTG
Found at i:7691108 original size:16 final size:16
Alignment explanation
Indices: 7691056--7691123 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
7691046 TTTCATTTTT
7691056 TATTTTATTTTATTTA
1 TATTTTATTTTATTTA
* *
7691072 T-TTTT-TTAACTATTAA
1 TATTTTATT--TTATTTA
7691088 T-TTTTATTTTATTTA
1 TATTTTATTTTATTTA
*
7691103 TATTTTCATTTATCTTTA
1 TATTTT-ATTT-TATTTA
7691121 TAT
1 TAT
7691124 ATATGTGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 15 0.37
17 6 0.15
18 8 0.20
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTATTTTATTTA
Found at i:7691172 original size:3 final size:3
Alignment explanation
Indices: 7691157--7691232 Score: 66
Period size: 3 Copynumber: 25.7 Consensus size: 3
7691147 TAATATGTGC
* * *
7691157 TAT TAT T-T T-T TAT TAT TAT ATAT TAT TAT TAA AAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
7691201 TAT TAT TAT TAG CAT CAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7691233 AATACCTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
2 4 0.07
3 53 0.88
4 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7691228 original size:24 final size:24
Alignment explanation
Indices: 7691167--7691232 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
7691157 TATTATTTTT
7691167 TATTATTATATATTATTATTAAAAC
1 TATTATTA-ATATTATTATTAAAAC
* **
7691192 TATTATTATTATTATTATTAGCA-
1 TATTATTAATATTATTATTAAAAC
7691215 TCATTATTAATATTATTA
1 T-ATTATTAATATTATTA
7691233 AATACCTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.03
24 27 0.75
25 8 0.22
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (24 bp):
TATTATTAATATTATTATTAAAAC
Found at i:7694967 original size:41 final size:41
Alignment explanation
Indices: 7694909--7694988 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
7694899 AAGCCCAATA
* *
7694909 TTTACAGAGTTGCTGTATAGATTAATTAAATTTTAGATATG
1 TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATATG
* *
7694950 TTTACAGAGTTATTGTATAGATGAATTGAATTTTAGATA
1 TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATA
7694989 GGTAATCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.44
Consensus pattern (41 bp):
TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATATG
Found at i:7695993 original size:12 final size:12
Alignment explanation
Indices: 7695976--7696003 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7695966 TTGATAATAA
7695976 ATGGAAAATGAT
1 ATGGAAAATGAT
7695988 ATGGAAAATGAT
1 ATGGAAAATGAT
7696000 ATGG
1 ATGG
7696004 GATTGAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (12 bp):
ATGGAAAATGAT
Found at i:7699827 original size:22 final size:22
Alignment explanation
Indices: 7699780--7699829 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7699770 AGATTCCCAA
7699780 TTTCAAAGAATCAATAAACCTT
1 TTTCAAAGAATCAATAAACCTT
* *
7699802 TTTCGAAGAATTAATAAA-CTT
1 TTTCAAAGAATCAATAAACCTT
7699823 CTTTCAA
1 -TTTCAA
7699830 GGTGTCGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (22 bp):
TTTCAAAGAATCAATAAACCTT
Found at i:7713765 original size:21 final size:20
Alignment explanation
Indices: 7713715--7713768 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
7713705 ATATTTTAAA
7713715 ATTTTATAAAAAT-AAAAAAT
1 ATTTTA-AAAAATAAAAAAAT
* * *
7713735 AATCTCAAAAATAAAAAAAAT
1 ATTTTAAAAAAT-AAAAAAAT
7713756 ATTTTAAAAAATA
1 ATTTTAAAAAATA
7713769 TAATTGAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
19 6 0.23
20 4 0.15
21 16 0.62
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (20 bp):
ATTTTAAAAAATAAAAAAAT
Found at i:7714663 original size:29 final size:28
Alignment explanation
Indices: 7714631--7714691 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
7714621 AAAAGCCGGG
7714631 TTTTTTCAAAATTTACCAAAATGGGCCGA
1 TTTTTTCAAAATTTACCAAAATGGGCC-A
* ** **
7714660 TTTTTTTATTATTTACCGGAATGGGCCA
1 TTTTTTCAAAATTTACCAAAATGGGCCA
7714688 TTTT
1 TTTT
7714692 CCGGGAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (28 bp):
TTTTTTCAAAATTTACCAAAATGGGCCA
Found at i:7714942 original size:22 final size:22
Alignment explanation
Indices: 7714914--7714964 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
7714904 TTTCCTCTCT
7714914 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
7714936 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
7714958 AATTCTC
1 AATTCTC
7714965 CCAAACCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.41
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:7715038 original size:31 final size:31
Alignment explanation
Indices: 7715002--7715067 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
7714992 CCTCAATTTC
7715002 ATTTTTTT-AAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
7715032 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
7715063 ATTTT
1 ATTTT
7715068 CATCAATGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
ATTTTTTTAAAATAATTTTAAATTTTTTTAT
Found at i:7715060 original size:10 final size:10
Alignment explanation
Indices: 7715002--7715067 Score: 69
Period size: 10 Copynumber: 6.5 Consensus size: 10
7714992 CCTCAATTTC
7715002 ATTTTTTTAA
1 ATTTTTTTAA
**
7715012 ATAATTTTAA
1 ATTTTTTTAA
*
7715022 ATTTTTTTAT
1 ATTTTTTTAA
7715032 ATTTTTTTAAA
1 ATTTTTTT-AA
**
7715043 ATAATTTTAA
1 ATTTTTTTAA
*
7715053 ATTTTTTTAT
1 ATTTTTTTAA
7715063 ATTTT
1 ATTTT
7715068 CATCAATGGC
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
10 37 0.84
11 7 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:7715179 original size:14 final size:15
Alignment explanation
Indices: 7715160--7715189 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7715150 TTTTTAAATA
7715160 TTATTTA-ATATTTT
1 TTATTTATATATTTT
7715174 TTATTTATATATTTT
1 TTATTTATATATTTT
7715189 T
1 T
7715190 AGATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATATATTTT
Found at i:7716160 original size:7 final size:7
Alignment explanation
Indices: 7716148--7716172 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7716138 AGTCGATTGA
7716148 TATTTAG
1 TATTTAG
7716155 TATTTAG
1 TATTTAG
7716162 TATTTAG
1 TATTTAG
7716169 TATT
1 TATT
7716173 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:7717290 original size:25 final size:24
Alignment explanation
Indices: 7717262--7717330 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 24
7717252 TTTAAATTTA
7717262 TTATCTGATGTAATAAAATAGAAGT
1 TTAT-TGATGTAATAAAATAGAAGT
* * *
7717287 TTATTTAATATAATAAAATATAAGT
1 TTA-TTGATGTAATAAAATAGAAGT
7717312 TCTATTCGATGTAATAAAA
1 T-TATT-GATGTAATAAAA
7717331 ATCCTAATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 23 0.64
26 13 0.36
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.39
Consensus pattern (24 bp):
TTATTGATGTAATAAAATAGAAGT
Found at i:7717349 original size:18 final size:17
Alignment explanation
Indices: 7717326--7717374 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
7717316 TTCGATGTAA
*
7717326 TAAAAATCCTAATTTAAT
1 TAAAAA-CCTAACTTAAT
7717344 TAAAAACTCTAACTTAATT
1 TAAAAAC-CTAACTTAA-T
*
7717363 TAAAACCCTAAC
1 TAAAAACCTAAC
7717375 CCTAACCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 19 0.70
19 7 0.26
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAAACCTAACTTAAT
Found at i:7717396 original size:29 final size:29
Alignment explanation
Indices: 7717352--7717432 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
7717342 ATTAAAAACT
* *
7717352 CTAACTTAATTTAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACCCTAAC
7717381 CTAATTTAATTAAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACCCTAAC
7717410 CTAATTTAATTAAAAACCCTAAC
1 CTAATTTAATTAAAAACCCTAAC
7717433 TTAATTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
CTAATTTAATTAAAAACCCTAACCCTAAC
Found at i:7717424 original size:76 final size:76
Alignment explanation
Indices: 7717333--7717633 Score: 369
Period size: 76 Copynumber: 4.1 Consensus size: 76
7717323 TAATAAAAAT
* *
7717333 CCTAATTTAATTAAAAACTCTAACTTAATTTAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
7717398 CCTAACCCTAA
66 CCTAACCCTAA
*
7717409 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
7717474 CCTAA-CTTAA
66 CCTAACCCTAA
* * * ** *
7717484 -TTAA--AAACT-CTAACCCTAACCTAACTTAATTAAA----AACCCTAA-C----TTAATTAAA
1 CCTAATTTAATTAAAAACCCTAACTTAA-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAA
7717536 AACCCTAACCCTAA
63 AACCCTAACCCTAA
* *
7717550 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
7717615 CCTAACCCTAA
66 CCTAACCCTAA
7717626 CCTAATTT
1 CCTAATTT
7717634 TACATAATTT
Statistics
Matches: 189, Mismatches: 19, Indels: 34
0.78 0.08 0.14
Matches are distributed among these distances:
65 16 0.08
66 4 0.02
67 6 0.03
69 8 0.04
70 20 0.11
71 20 0.11
72 8 0.04
74 6 0.03
75 4 0.02
76 97 0.51
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.29
Consensus pattern (76 bp):
CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
CCTAACCCTAA
Found at i:7717431 original size:47 final size:47
Alignment explanation
Indices: 7717380--7717620 Score: 437
Period size: 47 Copynumber: 5.1 Consensus size: 47
7717370 CTAACCCTAA
* *
7717380 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
* *
7717427 CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
*
7717474 CCTAACTTAATTAAAAACTCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
7717521 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
7717568 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
7717615 CCTAAC
1 CCTAAC
7717621 CCTAACCTAA
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.27
Consensus pattern (47 bp):
CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
Found at i:7717436 original size:18 final size:18
Alignment explanation
Indices: 7717409--7717591 Score: 129
Period size: 18 Copynumber: 11.3 Consensus size: 18
7717399 CTAACCCTAA
*
7717409 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7717427 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
**
7717445 CCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
* *
7717456 CCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAAC
7717474 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
* **
7717492 TCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
7717503 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7717521 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
**
7717539 CCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
7717550 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7717568 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7717586 CCTAAC
1 CCTAAC
7717592 CCTAACCTAA
Statistics
Matches: 126, Mismatches: 18, Indels: 42
0.68 0.10 0.23
Matches are distributed among these distances:
11 16 0.13
12 6 0.05
14 3 0.02
15 3 0.02
17 6 0.05
18 92 0.73
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:7717600 original size:29 final size:29
Alignment explanation
Indices: 7717568--7717630 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
7717558 AATTAAAAAC
7717568 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
7717597 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
7717626 CCTAA
1 CCTAA
7717631 TTTTACATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACCCTAACCCTAA
Found at i:7717687 original size:55 final size:56
Alignment explanation
Indices: 7717628--7717873 Score: 273
Period size: 55 Copynumber: 4.3 Consensus size: 56
7717618 AACCCTAACC
*
7717628 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTT-GAACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTGTTAGAACTTAA
* * *
7717683 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATT-TTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTGTTAGAACTTAA
* ** * * *
7717738 TAATTTTACATAATTTGATAATTATACCTAATTTAATTAAAAAAATTTGGCTTAATAATTTTATA
1 TAATTTTACATAATTTGATAATTTTA-CTAA--CCATTAACAAAA-TT-G-TT-AGAA-CTTA-A
* * *
7717803 TAATTTTACATAATTTGATAATTTTACTAATCATTAACAAAATT-TTGGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTGTTAGAACTTAA
7717858 TAATTTTACATAATTT
1 TAATTTTACATAATTT
7717874 TACATAATGT
Statistics
Matches: 163, Mismatches: 17, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
54 2 0.01
55 93 0.57
56 7 0.04
57 1 0.01
58 10 0.06
59 2 0.01
61 2 0.01
62 12 0.07
63 1 0.01
64 7 0.04
65 26 0.16
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (56 bp):
TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTGTTAGAACTTAA
Found at i:7717760 original size:18 final size:18
Alignment explanation
Indices: 7717737--7717771 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7717727 TTTGGACTTA
*
7717737 ATAATTTTACATAATTTG
1 ATAATTATACATAATTTG
*
7717755 ATAATTATACCTAATTT
1 ATAATTATACATAATTT
7717772 AATTAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49
Consensus pattern (18 bp):
ATAATTATACATAATTTG
Found at i:7717806 original size:65 final size:65
Alignment explanation
Indices: 7717737--7717881 Score: 206
Period size: 65 Copynumber: 2.2 Consensus size: 65
7717727 TTTGGACTTA
7717737 ATAATTTTACATAATTTGATAATTATACCTAATTTAATTAA-AAAAATTT-GG-CTTAATAATTT
1 ATAATTTTACATAATTTGATAATTATA-CTAA--TAATTAACAAAAATTTGGGACTTAATAATTT
*
7717799 TAT
63 TAC
* * *
7717802 ATAATTTTACATAATTTGATAATTTTACTAATCATTAACAAAATTTTGGGACTTAATAATTTTAC
1 ATAATTTTACATAATTTGATAATTATACTAATAATTAACAAAAATTTGGGACTTAATAATTTTAC
7717867 ATAATTTTACATAAT
1 ATAATTTTACATAAT
7717882 GTTAGATTTG
Statistics
Matches: 73, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
62 6 0.08
63 7 0.10
64 6 0.08
65 54 0.74
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.46
Consensus pattern (65 bp):
ATAATTTTACATAATTTGATAATTATACTAATAATTAACAAAAATTTGGGACTTAATAATTTTAC
Found at i:7717807 original size:10 final size:10
Alignment explanation
Indices: 7717792--7717881 Score: 51
Period size: 10 Copynumber: 8.5 Consensus size: 10
7717782 ATTTGGCTTA
*
7717792 ATAATTTTAT
1 ATAATTTTAC
7717802 ATAATTTTAC
1 ATAATTTTAC
*
7717812 ATAA-TTT-G
1 ATAATTTTAC
7717820 ATAATTTTAC
1 ATAATTTTAC
*
7717830 -TAATCATTAAC
1 ATAAT--TTTAC
*
7717841 AAAATTTTGGGAC
1 ATAATTTT---AC
7717854 TTAATAATTTTAC
1 ---ATAATTTTAC
7717867 ATAATTTTAC
1 ATAATTTTAC
7717877 ATAAT
1 ATAAT
7717882 GTTAGATTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
8 4 0.06
9 10 0.16
10 30 0.48
11 4 0.06
12 3 0.05
13 4 0.06
16 7 0.11
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:7721254 original size:125 final size:124
Alignment explanation
Indices: 7720982--7721330 Score: 562
Period size: 125 Copynumber: 2.8 Consensus size: 124
7720972 TCCAAACTTG
*
7720982 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
7721047 TAGAAGCGATTTTATACTATTT-CTTCAGAAACGTC--AAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGC-TCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
* * *
7721104 CTACTGTAGCAAAATCACGTCCACGAGTGCGCGATTTCACAATTTCTTCTTAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
7721169 TAGAGGCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAAATTATTTCTTACATGAC
* *
7721229 TTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTAG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
7721294 TAAAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
7721331 CTCGAAATAA
Statistics
Matches: 209, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
122 93 0.44
123 1 0.00
124 2 0.01
125 112 0.54
126 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
Found at i:7721668 original size:29 final size:29
Alignment explanation
Indices: 7721609--7721675 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
7721599 CGATTTCCTG
* *
7721609 AAAAAT-GGCCCATTCCGGTAAATAATCA
1 AAAAATCGGCCCATTCCGATAAATAATAA
* **
7721637 AAAAATCGGCCCATTTCGATAAATTTTAA
1 AAAAATCGGCCCATTCCGATAAATAATAA
*
7721666 AAAAAACGGC
1 AAAAATCGGC
7721676 TTTTTTGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.22
Consensus pattern (29 bp):
AAAAATCGGCCCATTCCGATAAATAATAA
Found at i:7725527 original size:30 final size:29
Alignment explanation
Indices: 7725493--7725572 Score: 101
Period size: 30 Copynumber: 2.8 Consensus size: 29
7725483 TAGATCATTG
7725493 AACTATTCAAAAATTTTATTTAAGTCACTA
1 AACTATT-AAAAATTTTATTTAAGTCACTA
**
7725523 AACTATTTAAAAAAATTATTTAAGTCACTA
1 AACTA-TTAAAAATTTTATTTAAGTCACTA
*
7725553 ACCTATT--AAATTTTATTTAA
1 AACTATTAAAAATTTTATTTAA
7725573 AAAATTTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 11 0.25
29 2 0.05
30 29 0.66
31 2 0.05
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (29 bp):
AACTATTAAAAATTTTATTTAAGTCACTA
Found at i:7730325 original size:15 final size:15
Alignment explanation
Indices: 7730305--7730340 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
7730295 TTTTCACAAA
7730305 CATTAATAAGCATTT
1 CATTAATAAGCATTT
7730320 CATTAATAAGCATTT
1 CATTAATAAGCATTT
7730335 CATTAA
1 CATTAA
7730341 CACATTGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (15 bp):
CATTAATAAGCATTT
Found at i:7745360 original size:19 final size:19
Alignment explanation
Indices: 7745316--7745356 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7745306 GTTTTTTTAA
7745316 ATTTAAAAATATAATTTTC
1 ATTTAAAAATATAATTTTC
* *
7745335 ATATAAAAATATGATTTT-
1 ATTTAAAAATATAATTTTC
7745353 ATTT
1 ATTT
7745357 TAAATATGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTTAAAAATATAATTTTC
Found at i:7746376 original size:5 final size:5
Alignment explanation
Indices: 7746366--7746408 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
7746356 TATAAAATCA
*
7746366 ATAAT ATAAT ATAAT ATAAT ATAAAA ATAATT ATAATT ATAAT
1 ATAAT ATAAT ATAAT ATAAT AT-AAT ATAA-T ATAA-T ATAAT
7746409 TATTGTTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 20 0.59
6 14 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:7748222 original size:6 final size:6
Alignment explanation
Indices: 7748188--7748221 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7748178 CAAATGGATA
*
7748188 ATTTCC ATTTCC ATTTCC ATTTCC ATTTTC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
7748222 TTGGAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:7749691 original size:20 final size:20
Alignment explanation
Indices: 7749666--7749705 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7749656 ATTTTTAATA
7749666 ATTTTT-AATTTTTTAAAAAT
1 ATTTTTGAA-TTTTTAAAAAT
7749686 ATTTTTGAATTTTTAAAAAT
1 ATTTTTGAATTTTTAAAAAT
7749706 TTAAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTTTTGAATTTTTAAAAAT
Found at i:7751832 original size:84 final size:84
Alignment explanation
Indices: 7751744--7751916 Score: 258
Period size: 84 Copynumber: 2.1 Consensus size: 84
7751734 AGTTGTCATA
* *
7751744 TTATTATTCACCTATGGTGCATGAGACTTATACATCGATAGTGCATCAAACATTCTCCT-TTTTT
1 TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCT-CTATTTTT
*
7751808 TAATGCATGTCATATTTATG
65 TAATGCATGCCATATTTATG
* * * **
7751828 TTATTATTCACCTATGGTGCATGGGACTTGTGCACCGACAGTGCATCAAGTATTCTCTATTTTTT
1 TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCTCTATTTTTT
7751893 AATGCATGCCATATTTATG
66 AATGCATGCCATATTTATG
7751912 TTATT
1 TTATT
7751917 TTTGTATCAT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 2 0.03
84 78 0.98
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (84 bp):
TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCTCTATTTTTT
AATGCATGCCATATTTATG
Found at i:7761652 original size:21 final size:21
Alignment explanation
Indices: 7761628--7761670 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7761618 ATTTTTTACC
*
7761628 ATTTCTGACCTAGGTATCGAT
1 ATTTCTGACATAGGTATCGAT
* * *
7761649 ATTTTTGGCATTGGTATCGAT
1 ATTTCTGACATAGGTATCGAT
7761670 A
1 A
7761671 ATTGTTATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (21 bp):
ATTTCTGACATAGGTATCGAT
Found at i:7762887 original size:53 final size:53
Alignment explanation
Indices: 7762785--7762890 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
7762775 ACAAGTAAGC
* **
7762785 TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAACTTGTCGTATAAA
1 TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAAATTACCGTATAAA
7762838 TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAAATTACCGTATAAA
1 TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAAATTACCGTATAAA
7762891 CACATAAATC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (53 bp):
TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAAATTACCGTATAAA
Found at i:7772164 original size:34 final size:35
Alignment explanation
Indices: 7772124--7772197 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 35
7772114 AGCATATATT
* *
7772124 TATACTTATCAA-CTACATGTGCCGAATGC-ACATA
1 TATACTTAT-AATCCACATATGCCGAATGCAACATA
7772158 TATACTTATAATCCACATATGCCGAATGCATACATA
1 TATACTTATAATCCACATATGCCGAATGCA-ACATA
7772194 TATA
1 TATA
7772198 TATCCAACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 2 0.06
34 24 0.69
36 9 0.26
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (35 bp):
TATACTTATAATCCACATATGCCGAATGCAACATA
Found at i:7772430 original size:41 final size:41
Alignment explanation
Indices: 7772370--7772474 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
7772360 TTTAAACAGA
7772370 TTCACTGGCACTTCA-CCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACTGGCACTT-AGCCTGCTAGGCTTATAGCCTGATTCAG
7772411 TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
* *
7772452 ATCACCGGCACTTAGCCTGCTAG
1 TTCACTGGCACTTAGCCTGCTAG
7772475 ACGTAAAGTC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 1 0.02
41 60 0.98
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.30
Consensus pattern (41 bp):
TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
Found at i:7779517 original size:13 final size:14
Alignment explanation
Indices: 7779499--7779531 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7779489 TAAAACCAAT
7779499 ATAAAAGA-AAAAA
1 ATAAAAGATAAAAA
7779512 ATAAAA-ATAAAAA
1 ATAAAAGATAAAAA
7779525 ATAAAAG
1 ATAAAAG
7779532 TCCATTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.06
13 17 0.94
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (14 bp):
ATAAAAGATAAAAA
Found at i:7783307 original size:22 final size:21
Alignment explanation
Indices: 7783280--7783320 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
7783270 CCTTGGATGT
7783280 TTTTAA-GTTGTTTGTAAGATTC
1 TTTTAAGGTT-TTTG-AAGATTC
7783302 TTTTAAGGTTTTTGAAGAT
1 TTTTAAGGTTTTTGAAGAT
7783321 GGGCAGTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 10 0.56
23 3 0.17
ACGTcount: A:0.24, C:0.02, G:0.20, T:0.54
Consensus pattern (21 bp):
TTTTAAGGTTTTTGAAGATTC
Found at i:7788666 original size:30 final size:30
Alignment explanation
Indices: 7788623--7788681 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
7788613 CTTAACAAGC
7788623 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* * *
7788653 AAATGTCTTTAAAATAATAATAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
7788682 CAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:7789698 original size:19 final size:18
Alignment explanation
Indices: 7789653--7789722 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 18
7789643 TTAATTTTTT
*
7789653 AAAATTTAAAAA-TTTAA
1 AAAATTAAAAAATTTTAA
*
7789670 AAAATATAAAAATATTTTTA
1 AAAAT-TAAAAA-ATTTTAA
*
7789690 AAAATTAAAAAATCATTAA
1 AAAATTAAAAAAT-TTTAA
7789709 AAAATTAAAAAATT
1 AAAATTAAAAAATT
7789723 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.11
18 7 0.16
19 23 0.52
20 9 0.20
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATTAAAAAATTTTAA
Found at i:7789720 original size:8 final size:8
Alignment explanation
Indices: 7789653--7789723 Score: 52
Period size: 8 Copynumber: 8.0 Consensus size: 8
7789643 TTAATTTTTT
*
7789653 AAAATTTA
1 AAAAATTA
*
7789661 AAAATTTA
1 AAAAATTA
7789669 AAAAATATA
1 AAAAAT-TA
*
7789678 AAAATATTTTT
1 AAAA-A--TTA
7789689 AAAAATTAA
1 AAAAATT-A
7789698 AAAATCATTA
1 AAAA--ATTA
7789708 AAAAATTA
1 AAAAATTA
7789716 AAAAATTA
1 AAAAATTA
7789724 TAATTTTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
8 27 0.51
9 10 0.19
10 7 0.13
11 8 0.15
12 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAAATTA
Found at i:7792512 original size:631 final size:627
Alignment explanation
Indices: 7791049--7792800 Score: 2394
Period size: 631 Copynumber: 2.7 Consensus size: 627
7791039 TTAAGTAGAA
* * * *
7791049 ATTTCCATGTCATATTTACACATAGATAGAAATTTTTTATATTACCTAATTTAGTTTTCGTTGTG
1 ATTTCCATGCCATATTTACACATGGATAGAAA-TTTCTATATTACCTAATTTAGTTATCGTTGTG
***
7791114 GTTGATAATAACAAGAAAAACTTAGGATGGATATTTTGATAAGCAGAAAAGGAGACAC-AAAATA
65 GTTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAG-AAAGGAGACACGAAAA-A
* * * *
7791178 TTTTGATGTATACCGAAACGACATGATAAAGAATGATATAAAAGTTGATGGCTTCTGAAAGGGCA
128 TTTTGATGTATACAGAAACAACATGATAAA-AAAGATATAAAAGTTGATGGCTTCTGAAAGGACA
* * * * * *
7791243 CTAATGAATCAAAAGTTTTATATCTTATATCTGTGGAGGAAAATTGAAAAAGAGAGAGAGAGAGG
192 TTGATGAATCAAAAGTTTTATTTGTTATATATGTGG-GGAAAATTGAAAAA-A-A-A-AAAGAGG
* * *
7791308 AGGATATGATATATGTATATGTATATTAGTGGATTAATTGGAA-TAAGAATATAAATGGGATTAG
252 AGGATATGATATATGTATATGTATATAAGTGGATTGATT-GAAGTAAGAATATAAAT-GGATTGG
*
7791372 AATTACCTTGGT-GGAAA-A---ATAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGAT
315 AATTACCTTGGTAGGAAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGAT
* *
7791432 CTACCACCAGAATTGAAAAACTCTCACCACTATTGGTTCTTCTCATTTCCTCCATAGATGAAATT
380 CTACCACCAAAATTG-AAAACTCTCACCACAATT-G---TT-TC--TT-CT-C--AGATGAAATT
* *
7791497 GGATATGGGATTGATAGTTATGAGATAAAAAGAGAGAGGGGCTTTATGATATATTATTAGACCCA
433 GGGTATGGGATTGATAGTTATGAGATAAAAAGAGAGAGAGGCTTTATGATATATTATTAGACCCA
**
7791562 AAAAAATTTAACCCCAAACTATTAACAAATGCCTTAAACAAACCACATTGCCACCTTAACATCAT
498 AAAAAATTTAACCCCAAACTATTAACAAATGCCTTAAACAAACCACATCACCACCTTAACATCAT
* * *
7791627 GTTTGGTTCATCTGAATAACTAAGCCATTCTGGGTGTATAGATCTAAATTAATACCAGCTGATTT
563 GTTTGGTTCATCTGAATAACTAAGCCATTCCGGCTGTATACATCTAAATTAATACCAGCTGATTT
* * *
7791692 ATTTCCATGCCATATTTACACATGAATAGAAATTTAC-ATATTATCTAATTTAGTAATCGTTGTG
1 ATTTCCATGCCATATTTACACATGGATAGAAATTT-CTATATTACCTAATTTAGTTATCGTTGTG
* *
7791756 GTTGATAATAACAAGAAAAACTTAGGACATATATTTTGATAAGGAGAAAGGAGACACGAAAAATT
65 GTTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATT
* *
7791821 TTGATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGATATT
130 TTGATGTATACAGAAACAACATGATAAA-AAAGATATAAAAGTTGATGGCTTCTGAAAGGACATT
* * **
7791886 GATGAATCAAAAGTTTTATTTGATATATATGTAAGGGAAAATTGAAAAAAAAAAACTGGAGGATA
194 GATGAATCAAAAGTTTTATTTGTTATATATGT-GGGGAAAATTGAAAAAAAAAAAGAGGAGGATA
7791951 TGATATATGTATATGTATATAAGTGGATTGATTGAAGTAAGAATATAAAGTGGATTGGAATTACC
258 TGATATATGTATATGTATATAAGTGGATTGATTGAAGTAAGAATATAAA-TGGATTGGAATTACC
7792016 TTGGTAGGAGAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCA
322 TTGGTAGGA-AATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCA
*
7792081 CTAAAATTGAAAAGCTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAG
386 CCAAAATTGAAAA-CTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAG
*
7792146 TTATGAGATAAAAAGAGAGAGAAGG-TTTATGATATATTATTAGACCCAAAAAGATTTAACCCCA
450 TTATGAGATAAAAAGAGAGAG-AGGCTTTATGATATATTATTAGACCCAAAAAAATTTAACCCCA
* *
7792210 AATTATTAACAAATGTCTTAAACAAACCACATCACCACCTTAACATCATGTTTGGTTCATCTGAA
514 AACTATTAACAAATGCCTTAAACAAACCACATCACCACCTTAACATCATGTTTGGTTCATCTGAA
* * *
7792275 TAACTAAGCCATTCCGGCTGTTTACATCT-GATTAATACTAG-TAGATTT
579 TAACTAAGCCATTCCGGCTGTATACATCTAAATTAATACCAGCT-GATTT
* * *
7792323 GTTTCCATGCCATATTTACACATGGATAGAAATTTCTATATTACCTAATTTAGTTATCATCGTGG
1 ATTTCCATGCCATATTTACACATGGATAGAAATTTCTATATTACCTAATTTAGTTATCGTTGTGG
* * * *
7792388 TCGATAATAACAAGAAAAATTTAGGACAAATTTTTTGATAAGTAGAAAGGAGACACGAAAAATTT
66 TTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATTT
* * *
7792453 TGATGTATACAGAAACAACATAATAAAAAAGAATATAAAAGTTAATGGCTCCTGAAAGGACATTG
131 TGATGTATACAGAAACAACATGATAAAAAAG-ATATAAAAGTTGATGGCTTCTGAAAGGACATTG
* * *
7792518 ATGAATCAAAAGTTTTATTTGTTATATATGTGGGGAAAAATTGAAAAAAGAGAGGAGGACATGGT
195 ATGAATCAAAAGTTTTATTTGTTATATATGTGGGG-AAAATTGAAAAAAAAAAAGAGG--A-GG-
* * *
7792583 ATATG-TGTATGCATATGCATATAAGTGGATTGATTGAAGTAAGAATATAAATGAGATTGGAATT
255 ATATGATATATGTATATGTATATAAGTGGATTGATTGAAGTAAGAATATAAATG-GATTGGAATT
* *
7792647 ACCTTGGTAGGAAAATAGTTGTAGCATTGATGCTAATAACATGAGAGAGGTTGTGTCATGATCTG
319 ACCTTGGTAGG-AAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTA
*** * * * *
7792712 CCACCAGAACCGGAAAACTCTAACCACAATTGCTTCTTCTCATATGAAATTGGGTATGAGATTGA
383 CCACCA-AAATTGAAAACTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGA
*
7792777 TAGTTATGAGATAAAAAGAAAGAG
447 TAGTTATGAGATAAAAAGAGAGAG
7792801 GGAGTTTATG
Statistics
Matches: 1002, Mismatches: 83, Indels: 57
0.88 0.07 0.05
Matches are distributed among these distances:
630 8 0.01
631 235 0.23
632 171 0.17
633 5 0.00
634 189 0.19
635 15 0.01
636 5 0.00
637 71 0.07
638 7 0.01
639 5 0.00
640 2 0.00
641 114 0.11
642 79 0.08
643 96 0.10
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (627 bp):
ATTTCCATGCCATATTTACACATGGATAGAAATTTCTATATTACCTAATTTAGTTATCGTTGTGG
TTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATTT
TGATGTATACAGAAACAACATGATAAAAAAGATATAAAAGTTGATGGCTTCTGAAAGGACATTGA
TGAATCAAAAGTTTTATTTGTTATATATGTGGGGAAAATTGAAAAAAAAAAAGAGGAGGATATGA
TATATGTATATGTATATAAGTGGATTGATTGAAGTAAGAATATAAATGGATTGGAATTACCTTGG
TAGGAAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCACCAAA
ATTGAAAACTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAGTTATGA
GATAAAAAGAGAGAGAGGCTTTATGATATATTATTAGACCCAAAAAAATTTAACCCCAAACTATT
AACAAATGCCTTAAACAAACCACATCACCACCTTAACATCATGTTTGGTTCATCTGAATAACTAA
GCCATTCCGGCTGTATACATCTAAATTAATACCAGCTGATTT
Found at i:7796976 original size:5 final size:5
Alignment explanation
Indices: 7796966--7796991 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7796956 AAAAAATAGG
7796966 GGAAA GGAAA GGAAA GGAAA GGAAA G
1 GGAAA GGAAA GGAAA GGAAA GGAAA G
7796992 CGATGGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GGAAA
Found at i:7797593 original size:94 final size:92
Alignment explanation
Indices: 7797490--7797747 Score: 391
Period size: 94 Copynumber: 2.8 Consensus size: 92
7797480 AAGAATATAA
* * *
7797490 AAGTTGATGGCTTCTGAAAGGACATTGATGAATCAAAAGTTTTATTTCTTATATATGTGGGGGGA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
7797555 AATTGAAAAAAAAAAAAAAAGAAGAAGAG
66 AATTGAAAAAAAAAAAAAAAG-A-AAGAG
*
7797584 AAGTTGATGGTTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
7797649 AATTG----AAAAAAAAAAAGAAAGAG
66 AATTGAAAAAAAAAAAAAAAGAAAGAG
* **
7797672 AAATTGATGGCTTCTTAATCGACATTGATGAATCAAAAATTTTATTTCTTATATATGT-GGGGAA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
7797736 AATTTGAAAAAA
66 AA-TTGAAAAAA
7797748 GAGAAATGAT
Statistics
Matches: 151, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
87 8 0.05
88 62 0.41
89 1 0.01
90 12 0.08
92 2 0.01
94 66 0.44
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (92 bp):
AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
AATTGAAAAAAAAAAAAAAAGAAAGAG
Found at i:7797715 original size:88 final size:90
Alignment explanation
Indices: 7797493--7797747 Score: 381
Period size: 88 Copynumber: 2.8 Consensus size: 90
7797483 AATATAAAAG
* * *
7797493 TTGATGGCTTCTGAAAGGACATTGATGAATCAAAAGTTTTATTTCTTATATATGTGGGGGGAAAT
1 TTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAAAAT
*
7797558 TGAAAAAAAAAAAAAAAGAAGAAGAGAAG
66 TG----AAAAAAAAAAAGAAGAAGAGAAA
*
7797587 TTGATGGTTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAAAAT
1 TTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAAAAT
7797652 TGAAAAAAAAAAAG-A-AAGAGAAA
66 TGAAAAAAAAAAAGAAGAAGAGAAA
**
7797675 TTGATGGCTTCTTAATCGACATTGATGAATCAAAAATTTTATTTCTTATATATGT-GGGGAAAAT
1 TTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAAAA-
7797739 TTGAAAAAA
65 TTGAAAAAA
7797748 GAGAAATGAT
Statistics
Matches: 152, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
87 8 0.05
88 68 0.45
89 1 0.01
90 12 0.08
94 63 0.41
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (90 bp):
TTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAAAAT
TGAAAAAAAAAAAGAAGAAGAGAAA
Found at i:7799323 original size:10 final size:9
Alignment explanation
Indices: 7799304--7799448 Score: 56
Period size: 9 Copynumber: 14.9 Consensus size: 9
7799294 CCATTTTTAA
7799304 TTTAAAAAT
1 TTTAAAAAT
7799313 TTTAGAAAAT
1 TTTA-AAAAT
**
7799323 TAAAAAAAAATT
1 T--TTAAAAA-T
7799335 TTTAAAAATAT
1 TTT-AAAA-AT
7799346 TTTAAAAAT
1 TTTAAAAAT
*
7799355 ATTTTAAAAT
1 -TTTAAAAAT
**
7799365 TAAAAAAAT
1 TTTAAAAAT
**
7799374 TAAAAAAGTAT
1 TTTAAAA--AT
7799385 TTTAAAAAT
1 TTTAAAAAT
*
7799394 ATTTTAAAAT
1 -TTTAAAAAT
*
7799404 TTAAAAAAT
1 TTTAAAAAT
**
7799413 TAAAAAAAT
1 TTTAAAAAT
*
7799422 ATTTTAAAAT
1 -TTTAAAAAT
** *
7799432 TAAAAAAAA
1 TTTAAAAAT
7799441 TTTAAAAA
1 TTTAAAAA
7799449 GTATGTAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 22
0.69 0.16 0.15
Matches are distributed among these distances:
9 47 0.46
10 32 0.31
11 19 0.19
12 4 0.04
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:7799333 original size:21 final size:20
Alignment explanation
Indices: 7799307--7799372 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 20
7799297 TTTTTAATTT
7799307 AAAAATTTTAGAAAATTAAAA
1 AAAAATTTTA-AAAATTAAAA
**
7799328 AAAAATTTTTAAAAATATTTTAA
1 AAAAA-TTTT-AAAA-ATTAAAA
*
7799351 AAATATTTT-AAAATTAAAA
1 AAAAATTTTAAAAATTAAAA
7799370 AAA
1 AAA
7799373 TTAAAAAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
19 8 0.22
20 3 0.08
21 5 0.14
22 11 0.30
23 10 0.27
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
AAAAATTTTAAAAATTAAAA
Found at i:7799386 original size:39 final size:39
Alignment explanation
Indices: 7799338--7799479 Score: 162
Period size: 39 Copynumber: 3.9 Consensus size: 39
7799328 AAAAATTTTT
7799338 AAAAA-TATTTTAAAAATATTTTAAAATTAAAAAAATTA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTA
*
7799376 AAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAATTA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTA
* *
7799415 AAAAAATATTTT--AAA-A--TT---A--AAAAAAATTT
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTA
* *
7799444 AAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAA
7799480 ATATTTATTA
Statistics
Matches: 86, Mismatches: 7, Indels: 21
0.75 0.06 0.18
Matches are distributed among these distances:
29 17 0.20
31 4 0.05
32 1 0.01
34 4 0.05
36 1 0.01
37 4 0.05
38 5 0.06
39 50 0.58
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTA
Found at i:7799441 original size:68 final size:67
Alignment explanation
Indices: 7799335--7799479 Score: 218
Period size: 68 Copynumber: 2.1 Consensus size: 67
7799325 AAAAAAAATT
** * *
7799335 TTTAAAAATATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAATATTTTA
1 TTTAAAAA-ATTAAAAAAATATTTTAAAATTAAAAAAATTAAAAAAGTATGTAAAAAATATTTTA
7799400 AAA
65 AAA
*
7799403 TTTAAAAAATTAAAAAAATATTTTAAAATTAAAAAAAATTTAAAAAGTATGTAAAAAATATTTTA
1 TTTAAAAAATTAAAAAAATATTTTAAAATT-AAAAAAATTAAAAAAGTATGTAAAAAATATTTTA
7799468 AAA
65 AAA
*
7799471 TTAAAAAAA
1 TTTAAAAAA
7799480 ATATTTATTA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
67 20 0.29
68 50 0.71
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (67 bp):
TTTAAAAAATTAAAAAAATATTTTAAAATTAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAA
AA
Found at i:7799470 original size:11 final size:11
Alignment explanation
Indices: 7799328--7799430 Score: 77
Period size: 11 Copynumber: 10.4 Consensus size: 11
7799318 AAAATTAAAA
7799328 AAAAAT-TTTT
1 AAAAATATTTT
7799338 AAAAATATTTT
1 AAAAATATTTT
7799349 AAAAATATTTT
1 AAAAATATTTT
7799360 --AAA-A--TT
1 AAAAATATTTT
* *
7799366 AAAAA-AATTA
1 AAAAATATTTT
7799376 AAAAAGTATTTT
1 AAAAA-TATTTT
7799388 AAAAATATTTT
1 AAAAATATTTT
7799399 --AAA-A-TTT
1 AAAAATATTTT
**
7799406 AAAAA-ATTAA
1 AAAAATATTTT
7799416 AAAAATATTTT
1 AAAAATATTTT
7799427 AAAA
1 AAAA
7799431 TTAAAAAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
6 2 0.03
7 3 0.04
8 6 0.08
9 10 0.13
10 18 0.24
11 28 0.37
12 8 0.11
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7799479 original size:20 final size:19
Alignment explanation
Indices: 7799408--7799485 Score: 95
Period size: 19 Copynumber: 3.9 Consensus size: 19
7799398 TAAAATTTAA
7799408 AAAATTAAAAAAATATTTT
1 AAAATTAAAAAAATATTTT
*
7799427 AAAATTAAAAAAA-ATTTA
1 AAAATTAAAAAAATATTTT
*
7799445 AAAAGTATGTAAAAAATATTTT
1 AAAA-T-T-AAAAAAATATTTT
7799467 AAAATTAAAAAAAATATTT
1 AAAATT-AAAAAAATATTT
7799486 ATTATATCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.16
19 14 0.28
20 13 0.26
21 7 0.14
22 8 0.16
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATTAAAAAAATATTTT
Found at i:7799907 original size:8 final size:8
Alignment explanation
Indices: 7799896--7799929 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
7799886 AAAATTAATT
7799896 AATTTTAA
1 AATTTTAA
7799904 AATTTTAA
1 AATTTTAA
7799912 AATTTTAA
1 AATTTTAA
7799920 AATTTTAA
1 AATTTTAA
7799928 AA
1 AA
7799930 ATATTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
AATTTTAA
Found at i:7802151 original size:22 final size:22
Alignment explanation
Indices: 7802126--7802204 Score: 97
Period size: 22 Copynumber: 3.6 Consensus size: 22
7802116 TGTGTCATAG
**
7802126 TCACACGATCGTGTGCCTCCTT
1 TCACACGGGCGTGTGCCTCCTT
*
7802148 TCACACGGGCATGTGCCTCCTT
1 TCACACGGGCGTGTGCCTCCTT
*
7802170 TCACATGGGCGTGTGCCTCC-T
1 TCACACGGGCGTGTGCCTCCTT
* *
7802191 TCATATGGGCGTGT
1 TCACACGGGCGTGT
7802205 TGACCCTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 14 0.27
22 37 0.73
ACGTcount: A:0.13, C:0.32, G:0.25, T:0.30
Consensus pattern (22 bp):
TCACACGGGCGTGTGCCTCCTT
Found at i:7802198 original size:21 final size:22
Alignment explanation
Indices: 7802135--7802204 Score: 106
Period size: 22 Copynumber: 3.2 Consensus size: 22
7802125 GTCACACGAT
*
7802135 CGTGTGCCTCCTTTCACACGGG
1 CGTGTGCCTCCTTTCACATGGG
*
7802157 CATGTGCCTCCTTTCACATGGG
1 CGTGTGCCTCCTTTCACATGGG
*
7802179 CGTGTGCCTCC-TTCATATGGG
1 CGTGTGCCTCCTTTCACATGGG
7802200 CGTGT
1 CGTGT
7802205 TGACCCTACA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
21 14 0.32
22 30 0.68
ACGTcount: A:0.10, C:0.31, G:0.27, T:0.31
Consensus pattern (22 bp):
CGTGTGCCTCCTTTCACATGGG
Found at i:7805915 original size:13 final size:13
Alignment explanation
Indices: 7805897--7805948 Score: 104
Period size: 13 Copynumber: 4.0 Consensus size: 13
7805887 GGCATGTAGC
7805897 CCACATGGGCATG
1 CCACATGGGCATG
7805910 CCACATGGGCATG
1 CCACATGGGCATG
7805923 CCACATGGGCATG
1 CCACATGGGCATG
7805936 CCACATGGGCATG
1 CCACATGGGCATG
7805949 TGGGTCTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CCACATGGGCATG
Found at i:7809129 original size:17 final size:18
Alignment explanation
Indices: 7809097--7809135 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
7809087 CCACACGGGC
*
7809097 TAGGCCAGATTGGGCGTG
1 TAGGCCACATTGGGCGTG
7809115 TAGGCCACA-TGGGCGTG
1 TAGGCCACATTGGGCGTG
7809132 TAGG
1 TAGG
7809136 TTTTGGGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.18, C:0.18, G:0.44, T:0.21
Consensus pattern (18 bp):
TAGGCCACATTGGGCGTG
Found at i:7815154 original size:7 final size:7
Alignment explanation
Indices: 7815135--7815169 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
7815125 AATTCTGATA
7815135 TATCTGTT
1 TATCTG-T
7815143 TATCTGT
1 TATCTGT
7815150 TATCTGT
1 TATCTGT
7815157 TATCTG-
1 TATCTGT
7815163 TATCTGT
1 TATCTGT
7815170 GTATGGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 6 0.23
7 14 0.54
8 6 0.23
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (7 bp):
TATCTGT
Found at i:7825373 original size:64 final size:64
Alignment explanation
Indices: 7825272--7825400 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
7825262 AGTTCGTTTT
*
7825272 TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTACTTCA
1 TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTACCTCA
7825336 TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTACCTCA
1 TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTACCTCA
7825400 T
1 T
7825401 CCATATCAAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (64 bp):
TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTACCTCA
Found at i:7825963 original size:48 final size:48
Alignment explanation
Indices: 7825911--7826007 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
7825901 CTCCCTTGGT
7825911 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
1 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
*
7825959 AGAAAATTTTTCATATAATAAATTGAAAGCTTGTTACTCAAATGTTAA
1 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
7826007 A
1 A
7826008 ATTGAATAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (48 bp):
AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
Found at i:7826007 original size:27 final size:27
Alignment explanation
Indices: 7825930--7826013 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 27
7825920 TTCATATAAG
7825930 AAATTGAAAGCTTGTTACTCAAATGTT
1 AAATTGAAAGCTTGTTACTCAAATGTT
* * **
7825957 AAA--GAAA-ATT-TT--TCATATAAT
1 AAATTGAAAGCTTGTTACTCAAATGTT
7825978 AAATTGAAAGCTTGTTACTCAAATGTT
1 AAATTGAAAGCTTGTTACTCAAATGTT
7826005 AAAATTGAA
1 -AAATTGAA
7826014 TAAAAGTGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 13
0.67 0.13 0.21
Matches are distributed among these distances:
21 9 0.21
23 6 0.14
24 4 0.10
25 6 0.14
27 9 0.21
28 8 0.19
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (27 bp):
AAATTGAAAGCTTGTTACTCAAATGTT
Found at i:7826542 original size:6 final size:6
Alignment explanation
Indices: 7826531--7826612 Score: 155
Period size: 6 Copynumber: 13.7 Consensus size: 6
7826521 AAAAATGAGG
*
7826531 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATAT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
7826579 ATATGT ATATGT ATATGT ATATGT ATATGT ATAT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATAT
7826613 AAGTAGATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:7829795 original size:16 final size:16
Alignment explanation
Indices: 7829774--7829807 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7829764 AATGGAGTTA
7829774 CAATTGAGATTGAATC
1 CAATTGAGATTGAATC
7829790 CAATTGAGATTGAATC
1 CAATTGAGATTGAATC
7829806 CA
1 CA
7829808 GACTCTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (16 bp):
CAATTGAGATTGAATC
Found at i:7830280 original size:18 final size:18
Alignment explanation
Indices: 7830259--7830294 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7830249 ACCAACATGT
* *
7830259 AAATAATTATTAAAATAA
1 AAATAATAATAAAAATAA
7830277 AAATAATAATAAAAATAA
1 AAATAATAATAAAAATAA
7830295 CATTCAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAATAATAAAAATAA
Found at i:7832386 original size:30 final size:30
Alignment explanation
Indices: 7832350--7832410 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
7832340 CAGATTTTAA
7832350 GAGCCACACGGGCTAGACACACACCCATGT
1 GAGCCACACGGGCTAGACACACACCCATGT
* *
7832380 GAGCCACACGGGCTAGACACACGCCTATGT
1 GAGCCACACGGGCTAGACACACACCCATGT
7832410 G
1 G
7832411 CCAGCCCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.11
Consensus pattern (30 bp):
GAGCCACACGGGCTAGACACACACCCATGT
Found at i:7840790 original size:28 final size:28
Alignment explanation
Indices: 7840741--7840797 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
7840731 AAAACATAGA
* *
7840741 GGTAGAAAGGAATAGTTTCAATTGATAT
1 GGTAGAAAGGAATAGTTCCAATTCATAT
7840769 GGTAGAAAGGAATAAG-TCCAATTCATAT
1 GGTAGAAAGGAAT-AGTTCCAATTCATAT
7840797 G
1 G
7840798 AAAATTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (28 bp):
GGTAGAAAGGAATAGTTCCAATTCATAT
Found at i:7866772 original size:18 final size:20
Alignment explanation
Indices: 7866728--7866774 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
7866718 ATCCTCCTTC
7866728 TCCTCATCACCTCAGATCTA
1 TCCTCATCACCTCAGATCTA
** *
7866748 TAATCATC-CTTC-GATCTA
1 TCCTCATCACCTCAGATCTA
7866766 TCCTCATCA
1 TCCTCATCA
7866775 GGCTCTTTAA
Statistics
Matches: 21, Mismatches: 5, Indels: 3
0.72 0.17 0.10
Matches are distributed among these distances:
18 12 0.57
19 3 0.14
20 6 0.29
ACGTcount: A:0.26, C:0.36, G:0.04, T:0.34
Consensus pattern (20 bp):
TCCTCATCACCTCAGATCTA
Found at i:7866964 original size:25 final size:27
Alignment explanation
Indices: 7866905--7866967 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 27
7866895 AGAAAATGGA
*
7866905 GTGAACAAAATCAAAATCATGGAAAAT
1 GTGAACAAAATCAAAACCATGGAAAAT
7866932 GTGAACAAAAT-AAAACCAT-G-AAAT
1 GTGAACAAAATCAAAACCATGGAAAAT
*
7866956 CGTGGACAAAAT
1 -GTGAACAAAAT
7866968 TATGTGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 4 0.12
25 11 0.33
26 7 0.21
27 11 0.33
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.17
Consensus pattern (27 bp):
GTGAACAAAATCAAAACCATGGAAAAT
Found at i:7873258 original size:23 final size:23
Alignment explanation
Indices: 7873236--7873290 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
7873226 CTATTTAATA
*
7873236 ATAAATATTTTAA-AGTATAAAT
1 ATAAATATTTTAACAATATAAAT
*
7873258 ATGAATATTTTAACAATATAAAT
1 ATAAATATTTTAACAATATAAAT
*
7873281 ATAAGTATTT
1 ATAAATATTT
7873291 GTGTAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (23 bp):
ATAAATATTTTAACAATATAAAT
Found at i:7873620 original size:20 final size:18
Alignment explanation
Indices: 7873582--7873634 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
7873572 CATCCAAACA
* *
7873582 CCAAAAAGAATTAACTTTT
1 CCAAAAATAATTTA-TTTT
*
7873601 CCGGAAAATCAATTTATTTT
1 CC-AAAAAT-AATTTATTTT
7873621 CCAAAAATAATTTA
1 CCAAAAATAATTTA
7873635 CCGAAAACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 6 0.21
19 7 0.25
20 10 0.36
21 5 0.18
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (18 bp):
CCAAAAATAATTTATTTT
Found at i:7874161 original size:27 final size:26
Alignment explanation
Indices: 7874121--7874176 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
7874111 AAGAAAGAAA
*
7874121 AAGAAAAAGAGAAGAGACAAGATTTT
1 AAGAAAAAGAGAAGAGACAAGATTAT
7874147 AAGAAAAATGAGAAGAGACAAGATTAT
1 AAGAAAAA-GAGAAGAGACAAGATTAT
7874174 AAG
1 AAG
7874177 TGCATAGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.59, C:0.04, G:0.23, T:0.14
Consensus pattern (26 bp):
AAGAAAAAGAGAAGAGACAAGATTAT
Found at i:7882575 original size:5 final size:5
Alignment explanation
Indices: 7882565--7882589 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7882555 GGCAGGGGGA
7882565 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
7882590 CAGGAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7886919 original size:33 final size:33
Alignment explanation
Indices: 7886869--7886943 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 33
7886859 AAACTAATCC
* *
7886869 TCTCTCAAATTTCCTCTC-AATTTCTTCTAAATT
1 TCTCTC-AATTTCCTCTCAAATTCCTTCCAAATT
*
7886902 TCCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
1 T-CTCTCAATTTCCTCTCAAATTCCTTCCAAATT
7886936 TCTCTCAA
1 TCTCTCAA
7886944 ATTCATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 18 0.49
34 19 0.51
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTCCTCTCAAATTCCTTCCAAATT
Found at i:7886944 original size:11 final size:11
Alignment explanation
Indices: 7886869--7886946 Score: 74
Period size: 11 Copynumber: 7.0 Consensus size: 11
7886859 AAACTAATCC
7886869 TCTCTCAAATT
1 TCTCTCAAATT
7886880 TCCTCTC-AATT
1 T-CTCTCAAATT
7886891 TCT-TCTAAATT
1 TCTCTC-AAATT
7886902 TCCTCTC-AATT
1 T-CTCTCAAATT
7886913 TGCTCTCAAATT
1 T-CTCTCAAATT
*
7886925 CCT-TCCAAATT
1 TCTCT-CAAATT
7886936 TCTCTCAAATT
1 TCTCTCAAATT
7886947 CATATTTAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
9 2 0.04
10 3 0.05
11 37 0.66
12 12 0.21
13 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.01, T:0.45
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:7886947 original size:22 final size:22
Alignment explanation
Indices: 7886869--7886946 Score: 99
Period size: 22 Copynumber: 3.5 Consensus size: 22
7886859 AAACTAATCC
7886869 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAATTTCCTCTCAATT
7886891 TCT-TCTAAATTTCCTCTCAATT
1 TCTCTC-AAATTTCCTCTCAATT
7886913 TGCTCTCAAA-TTCCT-TCCAAATT
1 T-CTCTCAAATTTCCTCT-C-AATT
7886936 TCTCTCAAATT
1 TCTCTCAAATT
7886947 CATATTTAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
21 3 0.06
22 34 0.68
23 11 0.22
24 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.01, T:0.45
Consensus pattern (22 bp):
TCTCTCAAATTTCCTCTCAATT
Found at i:7888828 original size:18 final size:18
Alignment explanation
Indices: 7888801--7888840 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7888791 CAGGTGCGTT
* *
7888801 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
7888819 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
7888837 TCCT
1 TCCT
7888841 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:7889360 original size:45 final size:44
Alignment explanation
Indices: 7889307--7890266 Score: 765
Period size: 45 Copynumber: 21.5 Consensus size: 44
7889297 TTGAGTTATT
*
7889307 ACTT-AAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
* ** * *
7889351 ACTTAAAAACCATAAACTAATTTAATTAAAAACACTAAACCCTTA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTTA
* * *
7889396 ACTTAAAAA-CCTTAACCCTT-AATTAAAAACACTAAATCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
* * *
7889439 AATTAAAAACCCTAAACCCTTAACTTAAAAAACCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
** * * **
7889484 AAATAAAAACCCTAAACTC-TAACCCTTAGCTTAAAACCCTAAACTGATTTA
1 ACTTAAAAACCCTAAACCCTTAA--ATTA----AAAACCCTAAAC--CCTTA
*** * **
7889535 A-TTAAAAATTTTAAACCCTTAAACATAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAAC--CCTTA
* * **
7889581 A-TTAAAAACCCTAAACCATTAACTT-AAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
* * *
7889625 A-TTAAAAAACCATAAACCCTTAACTTAAAAACACT-AACCCTTA
1 ACTT-AAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
* * * * *
7889668 AATTAAAAATCATAAACCCTTAAAATTCAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
* *
7889713 ACTT-AAAACCCT-AACTCTTAAATTAAAAACCCTAAACTCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
* * ** * **
7889756 AATTAAAAGCCCTAGGCCCTTAACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
* *
7889802 A-TTAAAAACCTTAAACCCTTAAAATTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
* ** * *
7889846 ACTTAAAAACTCTAAACTAATTTAGTTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTTA
*
7889891 ACTTAAAAA-CCTTAACCCTTAAATT-AAAACCACTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACC-CTAAACCCTT-A
* * * * *
7889935 AATTAAAAACCATAAACCCTTAACTTAAAAATCCT-AATCCTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
* *
7889978 AATTAAAAACCCTAAACCCTTAAAGTTAAAAACCCTAAGCCCTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAACCCTTA
** *
7890023 ACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTT-A
* * **
7890069 ACTT-AAAACCCTAACCCCTTAACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
*
7890114 A-TTAAAAACCCTAAACCATTAAATTTAAAAACCCT-AACCCTTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAACCC-TTA
** * * *
7890158 ACTT-AAAACCCTAAACTAATTTACTTAAAACCCCTAAACCCTTA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTTA
* * * *
7890202 ACTTAAAAACCCT-AACCC-TCAACTAAAAAACCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
*
7890244 ACTTAAAAACCCTTAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAA
7890267 CTTTAAAATT
Statistics
Matches: 746, Mismatches: 123, Indels: 94
0.77 0.13 0.10
Matches are distributed among these distances:
42 76 0.10
43 84 0.11
44 162 0.22
45 294 0.39
46 96 0.13
47 2 0.00
50 25 0.03
51 5 0.01
52 2 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (44 bp):
ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
Found at i:7889700 original size:16 final size:17
Alignment explanation
Indices: 7889670--7889703 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7889660 AACCCTTAAA
7889670 TTAAAAATCATAAACCC
1 TTAAAAATCATAAACCC
*
7889687 TTAAAATTCA-AAACCC
1 TTAAAAATCATAAACCC
7889703 T
1 T
7889704 AAACCATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (17 bp):
TTAAAAATCATAAACCC
Found at i:7890272 original size:23 final size:22
Alignment explanation
Indices: 7889307--7890314 Score: 781
Period size: 23 Copynumber: 45.3 Consensus size: 22
7889297 TTGAGTTATT
7889307 ACTT-AAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
7889329 AATTAAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTTA
* **
7889351 ACTTAAAAACCATAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
7889375 A-TTAAAAACACTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889396 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *
7889417 A-TTAAAAACACTAAATCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
7889439 AATTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889461 ACTTAAAAAACCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
** *
7889484 AAATAAAAACCCTAAACTC-TA
1 ACTTAAAAACCCTAAACCCTTA
**
7889505 ACCCTTAGCTTAAAACCCTAAACTGATTTA
1 A--CTTA----AAAACCCTAAAC--CCTTA
***
7889535 A-TTAAAAATTTTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* **
7889557 ACATAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
7889581 A-TTAAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTTA
**
7889602 ACTT-AAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
7889625 A-TTAAAAAACCATAAACCCTTA
1 ACTT-AAAAACCCTAAACCCTTA
*
7889647 ACTTAAAAACACT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* * *
7889668 AATTAAAAATCATAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* * *
7889691 AATTCAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889713 ACTT-AAAACCCT-AACTCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *
7889733 AATTAAAAACCCTAAACTCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* * **
7889756 AATTAAAAGCCCTAGGCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
7889778 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
7889802 A-TTAAAAACCTTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
7889824 AATTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* ** *
7889846 ACTTAAAAACTCTAAACTAATTT
1 ACTTAAAAACCCTAAAC-CCTTA
*
7889869 AGTTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889891 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889912 AATT-AAAACCACTAAACCCTTAA
1 ACTTAAAAACC-CTAAACCCTT-A
* *
7889935 AATTAAAAACCATAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *
7889957 ACTTAAAAATCCT-AATCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7889978 AATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
7890001 AGTTAAAAACCCTAAGCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
7890023 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
7890047 A-TTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
7890069 ACTT-AAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
7890090 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
7890114 A-TTAAAAACCCTAAACCATTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
7890136 ATTTAAAAACCCT-AACCCTTTA
1 ACTTAAAAACCCTAAACCC-TTA
** *
7890158 ACTT-AAAACCCTAAACTAATTT
1 ACTTAAAAACCCTAAAC-CCTTA
*
7890180 ACTTAAAACCCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7890202 ACTTAAAAACCCT-AACCCTCA
1 ACTTAAAAACCCTAAACCCTTA
* *
7890223 AC-TAAAAAACCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
7890244 ACTTAAAAACCCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *** *
7890266 ACTTTAAAATTTTAAA--CTAGA
1 ACTTAAAAACCCTAAACCCT-TA
*
7890287 ACTTAAAAACCAT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
7890308 ACTTAAA
1 ACTTAAA
7890315 TTTATTTGAT
Statistics
Matches: 788, Mismatches: 137, Indels: 123
0.75 0.13 0.12
Matches are distributed among these distances:
20 33 0.04
21 164 0.21
22 259 0.33
23 277 0.35
24 35 0.04
25 2 0.00
27 15 0.02
30 3 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (22 bp):
ACTTAAAAACCCTAAACCCTTA
Found at i:7893015 original size:16 final size:16
Alignment explanation
Indices: 7892996--7893026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7892986 TATTGTTATC
*
7892996 TATTTATTTATATTTA
1 TATTTATTTAAATTTA
7893012 TATTTATTTAAATTT
1 TATTTATTTAAATTT
7893027 TCGGTACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATTTAAATTTA
Found at i:7894869 original size:16 final size:15
Alignment explanation
Indices: 7894842--7894880 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
7894832 TTTACGGTTT
7894842 AAAA-AATTTTTTTA
1 AAAATAATTTTTTTA
7894856 AAAATAATTTTTTTA
1 AAAATAATTTTTTTA
*
7894871 AAAATTATTT
1 AAAATAATTT
7894881 AAAAATAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATAATTTTTTTA
Found at i:7894927 original size:51 final size:51
Alignment explanation
Indices: 7894883--7894980 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
7894873 AATTATTTAA
*
7894883 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTCAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
7894934 AAATATGGATTCGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTCAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
7894981 GAGGAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTCAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:7894980 original size:11 final size:11
Alignment explanation
Indices: 7894956--7895011 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
7894946 GAGAGAAATT
*
7894956 TTGA-AGGAAT
1 TTGAGAGGAAA
*
7894966 TTGAGAGCAAA
1 TTGAGAGGAAA
7894977 TTGAGAGGAAA
1 TTGAGAGGAAA
* *
7894988 TTTAGAAGAAA
1 TTGAGAGGAAA
7894999 TTGAGAGGAAA
1 TTGAGAGGAAA
7895010 TT
1 TT
7895012 TTAGATAAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 4 0.11
11 34 0.89
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.25
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:7894983 original size:33 final size:33
Alignment explanation
Indices: 7894946--7895011 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
7894936 ATATGGATTC
* *
7894946 GAGA-GAAATTTTGAAGGAATTTGAGAGCAAATT
1 GAGAGGAAATTTAGAA-GAAATTGAGAGCAAATT
*
7894979 GAGAGGAAATTTAGAAGAAATTGAGAGGAAATT
1 GAGAGGAAATTTAGAAGAAATTGAGAGCAAATT
7895012 TTAGATAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 19 0.66
34 10 0.34
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.24
Consensus pattern (33 bp):
GAGAGGAAATTTAGAAGAAATTGAGAGCAAATT
Found at i:7897155 original size:9 final size:9
Alignment explanation
Indices: 7897138--7897174 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7897128 TATAGTTTGA
7897138 TATTCGAAT
1 TATTCGAAT
*
7897147 TATTTGAAT
1 TATTCGAAT
*
7897156 TATTCGAGT
1 TATTCGAAT
7897165 TATTCGAAT
1 TATTCGAAT
7897174 T
1 T
7897175 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7897242 original size:9 final size:9
Alignment explanation
Indices: 7897225--7897255 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7897215 TCGAGTTGAT
7897225 TCGAATAAC
1 TCGAATAAC
*
7897234 TCGATTAAC
1 TCGAATAAC
7897243 TCGAATAAC
1 TCGAATAAC
7897252 TCGA
1 TCGA
7897256 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7905050 original size:13 final size:13
Alignment explanation
Indices: 7905034--7905097 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
7905024 TTTAAATCAA
7905034 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
7905047 ACTTCTCAAAATC
1 ACTTTTCAAAAGC
*
7905060 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
*
7905073 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
7905086 ACTTCTCAAAAG
1 ACTTTTCAAAAG
7905098 TATTGCCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Done.