Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 28 of 196
Found at i:7906142 original size:15 final size:16
Alignment explanation
Indices: 7906113--7906142 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7906103 CATATATGTC
7906113 TTGTTTTCATTTGAAA
1 TTGTTTTCATTTGAAA
7906129 TTGTTTTC-TTTGAA
1 TTGTTTTCATTTGAA
7906143 GGTATAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (16 bp):
TTGTTTTCATTTGAAA
Found at i:7906940 original size:4 final size:4
Alignment explanation
Indices: 7906931--7906960 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
7906921 ATACTAGTGT
7906931 TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TA
7906961 CCCATCCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:7910650 original size:11 final size:11
Alignment explanation
Indices: 7910626--7910660 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
7910616 CACAAACTAA
7910626 TCCTCTCAAATT
1 TCCTCTC-AATT
7910638 TCCTCTCAATT
1 TCCTCTCAATT
7910649 TCCTCTCAATT
1 TCCTCTCAATT
7910660 T
1 T
7910661 TGGTGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.70
12 7 0.30
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (11 bp):
TCCTCTCAATT
Found at i:7911316 original size:23 final size:21
Alignment explanation
Indices: 7911288--7911336 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7911278 TTTGGTGCTC
*
7911288 TTATTTTTCTGCTGTTTTTGTTG
1 TTATTTTT-TGCTATTTTT-TTG
7911311 TTA-TTTTTGCTATTTTTTTG
1 TTATTTTTTGCTATTTTTTTG
7911331 TTATTT
1 TTATTT
7911337 ATACTGGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 11 0.46
22 4 0.17
23 3 0.12
ACGTcount: A:0.08, C:0.06, G:0.12, T:0.73
Consensus pattern (21 bp):
TTATTTTTTGCTATTTTTTTG
Found at i:7911331 original size:20 final size:22
Alignment explanation
Indices: 7911292--7911336 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
7911282 GTGCTCTTAT
*
7911292 TTTTCTGCTGTTTTTGTTGTTA
1 TTTTCTGCTATTTTTGTTGTTA
7911314 TTTT-TGCTATTTTT-TTGTTA
1 TTTTCTGCTATTTTTGTTGTTA
7911334 TTT
1 TTT
7911337 ATACTGGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.41
21 9 0.41
22 4 0.18
ACGTcount: A:0.07, C:0.07, G:0.13, T:0.73
Consensus pattern (22 bp):
TTTTCTGCTATTTTTGTTGTTA
Found at i:7913272 original size:12 final size:12
Alignment explanation
Indices: 7913255--7913280 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7913245 CAACACAGGC
7913255 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7913267 TTTTAGCGGCGT
1 TTTTAGCGGCGT
7913279 TT
1 TT
7913281 ATTTTCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:7913637 original size:111 final size:111
Alignment explanation
Indices: 7913349--7913676 Score: 378
Period size: 111 Copynumber: 2.9 Consensus size: 111
7913339 AAAATAAACA
* * * *
7913349 TTAGCGGCGATTTCT-AGAAAGTGCCGCTAAAAACCTAAGCTCAACGACGCCGTTTTCGGAG-TT
1 TTAGCGGCGATTT-TGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
7913412 TCT-GGGATTTTAGTGGCGTTTTCAAGAAAGCGCCCCAAAAGATCAGGGCT
65 T-TGGGGA-TTTAGTGGCGTTTT-TAGAAAGCGCCGCAAAAGA-CAGGGCT
* *
7913462 TTAGCGGCGTTTTTGAGAAAGCGCCACAAACAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGATTTTGAGAAAGCGCCGCAAA-AAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
7913527 TTGGGGATTTAGCGGCGTTTTTAGTAAAGCGCCGCTAATG-CGAGGGCT
65 TTGGGGATTTAGTGGCGTTTTTAG-AAAGCGCCGCAAAAGAC-AGGGCT
* * *
7913575 TTAGCGGCG-TTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGATGCCGTTTTTTAAGCTTT
1 TTAGCGGCGATTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* * * *
7913639 CGTGGATATAGTGGTGTTTTTAAGAAAGCGCCGCAAAA
66 TGGGGATTTAGTGGCGTTTTT-AGAAAGCGCCGCAAAA
7913677 AAACCTAATC
Statistics
Matches: 186, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
111 60 0.32
112 23 0.12
113 41 0.22
114 55 0.30
115 7 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (111 bp):
TTAGCGGCGATTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
TGGGGATTTAGTGGCGTTTTTAGAAAGCGCCGCAAAAGACAGGGCT
Found at i:7913820 original size:72 final size:72
Alignment explanation
Indices: 7913576--7913814 Score: 273
Period size: 72 Copynumber: 3.3 Consensus size: 72
7913566 GCGAGGGCTT
* * * *
7913576 TAGCGGCGTTTTGA-GAAAGCGCCGCAAAAAACCTAAGCCCAACGATGCCGTTTTTTAAGCTTTC
1 TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAACCTAAACCCAACGATGTCGTTTTTTGAGCTTTC
7913640 GTGGATA
66 GTGGATA
* * * * * * * *
7913647 TAGTGGTGTTTTTAAGAAAGCGCCGCAAAAAAACCTAATCCCAACTACGTCGTTTTCTGATCTTT
1 TAGCGGCGTTTTTAGGAAAGCGCCGC-AAAAAACCTAAACCCAACGATGTCGTTTTTTGAGCTTT
* * *
7913712 TGGGGATT
65 CGTGGATA
* * **
7913720 TAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACGAAACGATGTCGTTTTTTGAGCTTTC
1 TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAACCTAAACCCAACGATGTCGTTTTTTGAGCTTTC
7913785 GTGGATA
66 GTGGATA
* *
7913792 CAACGGCGTTTTTAGGAAAGCGC
1 TAGCGGCGTTTTTAGGAAAGCGC
7913815 TGCTAATGCT
Statistics
Matches: 135, Mismatches: 31, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
71 11 0.08
72 66 0.49
73 58 0.43
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (72 bp):
TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAACCTAAACCCAACGATGTCGTTTTTTGAGCTTTC
GTGGATA
Found at i:7913916 original size:113 final size:113
Alignment explanation
Indices: 7913718--7913939 Score: 275
Period size: 113 Copynumber: 2.0 Consensus size: 113
7913708 CTTTTGGGGA
** * * **
7913718 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACGAAACGATGTCGTTTTTTGAGCTT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAACCTAAACGAAACGATGCCGTTTTCAGAGCTT
* *
7913783 TCGTGGATACAACGGCGTTTTTAGGAAAGCGCTGCTAATGCTCAGGGC
66 TCGGGGATACAACGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* * *
7913831 TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAACCTAAGC-ATAACGGTGCCGTTTTCAGATCT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAACCTAAACGA-AACGATGCCGTTTTCAGAGCT
* * ** * *
7913895 TTTGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCA
65 TTCGGGGATACAACGGCGTTTTTAGGAAAGCGCCGCTAATGCTCA
7913940 AATAGTTTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 1 0.01
113 90 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (113 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAACCTAAACGAAACGATGCCGTTTTCAGAGCTT
TCGGGGATACAACGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:7913954 original size:10 final size:10
Alignment explanation
Indices: 7913939--7913963 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7913929 GCTAATGCTC
7913939 AAATAGTTTA
1 AAATAGTTTA
7913949 AAATAGTTTA
1 AAATAGTTTA
7913959 AAATA
1 AAATA
7913964 TTTGTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (10 bp):
AAATAGTTTA
Found at i:7914168 original size:22 final size:21
Alignment explanation
Indices: 7914143--7914210 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
7914133 TCTAGTGTAA
*
7914143 GGGTTAGGAGCTTATGGTTTAG
1 GGGTTAGG-GCTTAAGGTTTAG
* * *
7914165 GGGTTATGGGCTTAGGGTCTAT
1 GGGTTA-GGGCTTAAGGTTTAG
*
7914187 GGGTTAATGGCTTAAGGTTTAG
1 GGGTT-AGGGCTTAAGGTTTAG
7914209 GG
1 GG
7914211 TTTAATCAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 34 0.92
23 3 0.08
ACGTcount: A:0.18, C:0.06, G:0.41, T:0.35
Consensus pattern (21 bp):
GGGTTAGGGCTTAAGGTTTAG
Found at i:7914247 original size:8 final size:8
Alignment explanation
Indices: 7914236--7914295 Score: 63
Period size: 8 Copynumber: 7.9 Consensus size: 8
7914226 ATGATTTAAG
7914236 GGTTTAGA
1 GGTTTAGA
*
7914244 GGTTTA-T
1 GGTTTAGA
*
7914251 GCTTTAGA
1 GGTTTAGA
7914259 GGTTTA-A
1 GGTTTAGA
*
7914266 GGTTTAAA
1 GGTTTAGA
7914274 GGTTTA-A
1 GGTTTAGA
*
7914281 GGTTTAGG
1 GGTTTAGA
7914289 GGTTTAG
1 GGTTTAG
7914296 GTTATTGTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
7 19 0.43
8 25 0.57
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (8 bp):
GGTTTAGA
Found at i:7914256 original size:15 final size:15
Alignment explanation
Indices: 7914230--7914298 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
7914220 GAGTTTATGA
7914230 TTTAAGGGTTTAGAGG
1 TTTAA-GGTTTAGAGG
* *
7914246 TTTATGCTTTAGAGG
1 TTTAAGGTTTAGAGG
*
7914261 TTTAAGGTTTAAAGG
1 TTTAAGGTTTAGAGG
*
7914276 TTTAAGGTTTAGGGG
1 TTTAAGGTTTAGAGG
7914291 TTT-AGGTT
1 TTTAAGGTT
7914299 ATTGTCTTAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
14 5 0.11
15 37 0.80
16 4 0.09
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.43
Consensus pattern (15 bp):
TTTAAGGTTTAGAGG
Found at i:7914268 original size:7 final size:7
Alignment explanation
Indices: 7914230--7914286 Score: 60
Period size: 8 Copynumber: 7.6 Consensus size: 7
7914220 GAGTTTATGA
7914230 TTTAAGGG
1 TTTAA-GG
7914238 TTTAGAGG
1 TTTA-AGG
* *
7914246 TTTATGC
1 TTTAAGG
7914253 TTTAGAGG
1 TTTA-AGG
7914261 TTTAAGG
1 TTTAAGG
7914268 TTTAAAGG
1 TTT-AAGG
7914276 TTTAAGG
1 TTTAAGG
7914283 TTTA
1 TTTA
7914287 GGGGTTTAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
7 19 0.45
8 22 0.52
9 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (7 bp):
TTTAAGG
Found at i:7914462 original size:21 final size:21
Alignment explanation
Indices: 7914290--7914468 Score: 66
Period size: 21 Copynumber: 8.6 Consensus size: 21
7914280 AGGTTTAGGG
*
7914290 GTTTA-GG-TTATTGTCTTAGG
1 GTTTAGGGTTTATTGT-TTAGA
* *
7914310 GTTTAAGGGTTATTGGTTTACGA
1 GTTTAGGGTTTATT-GTTTA-GA
* *
7914333 -TTTAGTGTTTATTGTTTAGG
1 GTTTAGGGTTTATTGTTTAGA
* *
7914353 GTGTA-GGTTTATGGTTTTA-A
1 GTTTAGGGTTTATTG-TTTAGA
* * *
7914373 GTAT-GCAGTTTA-TGATTTAGT
1 GTTTAG-GGTTTATTG-TTTAGA
* * * *
7914394 GTTAAGAGTTTAGTGTTTATA
1 GTTTAGGGTTTATTGTTTAGA
* ** * *
7914415 GTTTAGGGTGTAGGGTGTAGG
1 GTTTAGGGTTTATTGTTTAGA
*
7914436 GCTTAGGGTTTATTGTTTAGA
1 GTTTAGGGTTTATTGTTTAGA
*
7914457 GTTTAGAGTTTA
1 GTTTAGGGTTTA
7914469 GCTAGTAGCT
Statistics
Matches: 115, Mismatches: 33, Indels: 21
0.68 0.20 0.12
Matches are distributed among these distances:
20 21 0.18
21 70 0.61
22 21 0.18
23 3 0.03
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.47
Consensus pattern (21 bp):
GTTTAGGGTTTATTGTTTAGA
Found at i:7914467 original size:14 final size:14
Alignment explanation
Indices: 7914388--7914469 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 14
7914378 CAGTTTATGA
*
7914388 TTTAGTGTTAAGAG
1 TTTAGTGTTTAGAG
*
7914402 TTTAGTGTTTATAG
1 TTTAGTGTTTAGAG
* * *
7914416 TTTAGGGTGTAGGG
1 TTTAGTGTTTAGAG
* * * *
7914430 TGTAGGGCTTAGGG
1 TTTAGTGTTTAGAG
*
7914444 TTTATTGTTTAGAG
1 TTTAGTGTTTAGAG
*
7914458 TTTAGAGTTTAG
1 TTTAGTGTTTAG
7914470 CTAGTAGCTT
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 52 1.00
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (14 bp):
TTTAGTGTTTAGAG
Found at i:7914551 original size:103 final size:103
Alignment explanation
Indices: 7914451--7914669 Score: 395
Period size: 103 Copynumber: 2.1 Consensus size: 103
7914441 GGGTTTATTG
7914451 TTTAGAGTTTAGAGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATGG
1 TTTAGAGTTTAGAGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATGG
7914516 GTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATAT
66 GTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATAT
*
7914554 TTTA-AGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATG
1 TTTAGA-GTTTAGAGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATG
*
7914618 GGTTAAGAGGGCATATGGTTTAGGGTTTAAATTTTATAT
65 GGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATAT
*
7914657 TTTAGGGTTTAGA
1 TTTAGAGTTTAGA
7914670 ATTATGGTAA
Statistics
Matches: 110, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
102 1 0.01
103 109 0.99
ACGTcount: A:0.28, C:0.05, G:0.29, T:0.38
Consensus pattern (103 bp):
TTTAGAGTTTAGAGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATGG
GTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATAT
Found at i:7914642 original size:49 final size:49
Alignment explanation
Indices: 7914483--7914647 Score: 120
Period size: 49 Copynumber: 3.3 Consensus size: 49
7914473 GTAGCTTAGA
*
7914483 GTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATG
1 GTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATG
* ***** * * * * *
7914532 GTTTAGGGTTTAAATTTTA-TATTTTAAGGTTTA-GGGTTTAGCTAGTAGCTTA-G
1 GTTTAGGGATT-AA---TACGGGCATAGGGTATATGGGTTAAG--AG-GGCATATG
7914585 AGTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATG
1 -GTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATG
*
7914635 GTTTAGGGTTTAA
1 GTTTAGGGATTAA
7914648 ATTTTATATT
Statistics
Matches: 81, Mismatches: 24, Indels: 22
0.64 0.19 0.17
Matches are distributed among these distances:
49 26 0.32
50 7 0.09
51 14 0.17
52 14 0.17
53 6 0.07
54 14 0.17
ACGTcount: A:0.28, C:0.05, G:0.32, T:0.36
Consensus pattern (49 bp):
GTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATG
Found at i:7914647 original size:24 final size:24
Alignment explanation
Indices: 7914586--7914644 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
7914576 GTAGCTTAGA
*
7914586 GTTTAGGGATTAATACGGGCATAGG
1 GTTTAGGG-TTAAGACGGGCATAGG
* *
7914611 GTATATGGGTTAAGA-GGGCATATG
1 GTTTA-GGGTTAAGACGGGCATAGG
7914635 GTTTAGGGTT
1 GTTTAGGGTT
7914645 TAAATTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.17
24 12 0.41
25 9 0.31
26 3 0.10
ACGTcount: A:0.25, C:0.05, G:0.37, T:0.32
Consensus pattern (24 bp):
GTTTAGGGTTAAGACGGGCATAGG
Found at i:7914703 original size:103 final size:102
Alignment explanation
Indices: 7914490--7914693 Score: 259
Period size: 103 Copynumber: 2.0 Consensus size: 102
7914480 AGAGTTTAGG
7914490 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
1 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
** * ** ** **
7914555 TTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGG
66 TTAAGGTTTAGAATTTAGCTAG-AACACAGAGTAAAAA
*
7914593 GATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATGGTTTAGGGTTTAAATTTTATATT
1 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
* * *
7914658 TTAGGGTTTAGAA-TTATGGTA-AACACAGGGTAAAAA
66 TTAAGGTTTAGAATTTA-GCTAGAACACAGAGTAAAAA
7914694 TATGTTAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
101 7 0.08
102 3 0.03
103 77 0.89
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (102 bp):
GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
TTAAGGTTTAGAATTTAGCTAGAACACAGAGTAAAAA
Found at i:7915203 original size:116 final size:113
Alignment explanation
Indices: 7914911--7915221 Score: 337
Period size: 116 Copynumber: 2.7 Consensus size: 113
7914901 TTAGTTTCCA
* *
7914911 TTTTAGTGGCGTTTCTTC-ATAAACGCCGCAATTATGTTTTAAGTCTTTGCTAAACACTGTCG-T
1 TTTTAGTGGCGTTT-TTCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTT
* * * **
7914974 TTTAAATTGCGTTTTAGTGGCGTTTTCTCTTATGCACCGCAAAATTTCAG
65 TTTATATTGCATTTTAGTGGCATTTTCTCTTATG-ACCGCAAAAGGTCAG
* *
7915024 TTTTTGTGGCGTTTTT-ATGATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCAGTCGT
1 TTTTAGTGGCGTTTTTCA--ATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGT
* *
7915088 TTTTATTTTGCATTATTAGTGGCATTTT-TCGTTAAATG-CCGCAATAGGT-ATG
64 TTTTATATTGCATT-TTAGTGGCATTTTCTC-TT--ATGACCGCAAAAGGTCA-G
* * * *
7915140 TTTTAGTGGCGTTTTGTCAATAAACGCCGCAAATATGTTTTAAGTGTTTGCTAAACGGTGTCGTA
1 TTTTAGTGGCGTTTT-TCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTT
* *
7915205 TTTATCTGGCATTTTAG
65 TTTATATTGCATTTTAG
7915222 CTGCGTTAGT
Statistics
Matches: 168, Mismatches: 19, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
112 2 0.01
113 13 0.08
114 41 0.24
115 18 0.11
116 89 0.53
117 1 0.01
118 4 0.02
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (113 bp):
TTTTAGTGGCGTTTTTCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTTT
TTATATTGCATTTTAGTGGCATTTTCTCTTATGACCGCAAAAGGTCAG
Found at i:7917626 original size:9 final size:9
Alignment explanation
Indices: 7917569--7917826 Score: 196
Period size: 9 Copynumber: 27.2 Consensus size: 9
7917559 CTTATATATA
*
7917569 AACTTGCAT
1 AACTTACAT
7917578 AACTTACTCAGT
1 AACTTA--CA-T
*
7917590 AACATA-AT
1 AACTTACAT
*
7917598 ATCTTACAT
1 AACTTACAT
* *
7917607 AAATTAAAT
1 AACTTACAT
7917616 AACTTACAT
1 AACTTACAT
7917625 AACTTACAT
1 AACTTACAT
* *
7917634 AAATTAAAT
1 AACTTACAT
7917643 AACTTACAT
1 AACTTACAT
7917652 AACTTACAT
1 AACTTACAT
*
7917661 AAATTACAT
1 AACTTACAT
* *
7917670 AAATTAAAT
1 AACTTACAT
7917679 AACTTACAT
1 AACTTACAT
7917688 AACTTACAT
1 AACTTACAT
* *
7917697 AAATTAAAT
1 AACTTACAT
7917706 AACTTACAT
1 AACTTACAT
7917715 AACTTACAT
1 AACTTACAT
* *
7917724 AAATTAAAT
1 AACTTACAT
7917733 AACTTACATATT
1 AACTTAC--A-T
7917745 AACTTACAT
1 AACTTACAT
* *
7917754 AAGTTATCTAC
1 AACTTA-C-AT
*
7917765 AAGCTTATATAT
1 AA-C-T-TACAT
*
7917777 AAACTTGCAT
1 -AACTTACAT
7917787 AACTTACAT
1 AACTTACAT
*
7917796 AA-TAACAT
1 AACTTACAT
7917804 AATATCTTACAT
1 -A-A-CTTACAT
7917816 AACTTACAT
1 AACTTACAT
7917825 AA
1 AA
7917827 ATCACACAAA
Statistics
Matches: 197, Mismatches: 35, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
8 10 0.05
9 146 0.74
10 7 0.04
11 8 0.04
12 21 0.11
13 3 0.02
14 2 0.01
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:7923339 original size:21 final size:21
Alignment explanation
Indices: 7923315--7923368 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
7923305 GGCGGTAGCG
7923315 AGGGAAGCAGCA-GCTGCAGCA
1 AGGGAAGCAG-AGGCTGCAGCA
*
7923336 AGGGAAGCAGAGGCTGCAGCG
1 AGGGAAGCAGAGGCTGCAGCA
*
7923357 AGAGAAGCAGAG
1 AGGGAAGCAGAG
7923369 CAGAGCAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 29 0.97
ACGTcount: A:0.35, C:0.19, G:0.43, T:0.04
Consensus pattern (21 bp):
AGGGAAGCAGAGGCTGCAGCA
Found at i:7923946 original size:22 final size:22
Alignment explanation
Indices: 7923915--7923958 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7923905 TAGTGGCGTT
* *
7923915 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGACCTA
7923937 AAAAAACGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAGACCTA
7923959 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAGACCTA
Found at i:7927364 original size:44 final size:44
Alignment explanation
Indices: 7927316--7927435 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 44
7927306 TCGAATCCAA
* *
7927316 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTG-CTTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTT-AG
* *** * *
7927360 TCTGCCCCACTATGACTTCAGGGGGATAAGACTTGTTTTCTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTTAG
* * *
7927404 TCTACTTCGCTGCAACTTCAGGGAGATAAGAC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAC
7927436 CCGATGTGAT
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
44 54 0.92
45 5 0.08
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTTAG
Found at i:7927741 original size:87 final size:87
Alignment explanation
Indices: 7927646--7928056 Score: 601
Period size: 87 Copynumber: 4.7 Consensus size: 87
7927636 CGCAGGATGA
* * *
7927646 CAAGATCTGCTATCTTTAACCAGCTCCACTGCAAACGATGGAGGCAAGGCTTCGTTTTTGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTCGATCTG
7927711 CTTCACTGTTAACACAGGAAGG
66 CTTCACTGTTAACACAGGAAGG
* * * * * * *
7927733 CAATATCTG-TTTTTTTAACCAGTTCCATTGCAAATGATGGAGGCAAGGCTTTGTTTTCGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTCGATCTG
*
7927797 CTTCGCTGTTAACACAGGAAGG
66 CTTCACTGTTAACACAGGAAGG
* *
7927819 CAAGATCTACTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTCGATCTG
* *
7927884 CTTCGCTGTTAACGCAGGAAGG
66 CTTCACTGTTAACACAGGAAGG
* * *
7927906 CAAGATCTGCTATCTTTAACCAGCTCCACTACAATCGATGGAGGCAAGGCTTCG-TTTCTGGTCT
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTC-GATCT
* * *
7927970 GCTTCACTGCTAACGCAGAAAGG
65 GCTTCACTGTTAACACAGGAAGG
*
7927993 CAAGATCTGCTATCTTTAACCAGCTCCACTACAATCGATGGAGGCAAGGCTTTGTTTTCGATCT
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTCGATCT
7928057 TCACTGATCT
Statistics
Matches: 293, Mismatches: 28, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
86 80 0.27
87 209 0.71
88 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (87 bp):
CAAGATCTGCTATCTTTAACCAGCTCCACTACAAACGATGGAGGCAAGGCTTTGTTTTCGATCTG
CTTCACTGTTAACACAGGAAGG
Found at i:7927820 original size:43 final size:42
Alignment explanation
Indices: 7927773--7927909 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 42
7927763 CAAATGATGG
7927773 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACACAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAC-CAGGA
* * * * * * * * **
7927816 AGGCAAGATCTACTATCTTT-AACCAGCTCCACT-ACAACCGATGG-
1 AGGCAAG-GCT-TTGT-TTTCGATCTGCTTCGCTGTTAACC-A-GGA
7927860 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAC-CAGGA
7927903 AGGCAAG
1 AGGCAAG
7927910 ATCTGCTATC
Statistics
Matches: 65, Mismatches: 20, Indels: 18
0.63 0.19 0.17
Matches are distributed among these distances:
41 3 0.05
42 12 0.18
43 21 0.32
44 14 0.22
45 12 0.18
46 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (42 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACCAGGA
Found at i:7929295 original size:7 final size:7
Alignment explanation
Indices: 7929283--7929320 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
7929273 ATTTTTACTC
7929283 TTTCATT
1 TTTCATT
7929290 TTTCATTT
1 TTTCA-TT
7929298 TTTCA-T
1 TTTCATT
*
7929304 TCTCATT
1 TTTCATT
7929311 TTTCATT
1 TTTCATT
7929318 TTT
1 TTT
7929321 TTGAAATCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 5 0.19
7 15 0.56
8 7 0.26
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTCATT
Found at i:7929762 original size:28 final size:30
Alignment explanation
Indices: 7929695--7929762 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 30
7929685 TCTTTTCATA
*
7929695 TTTTATTTTGACTTTGATTGATTTCTCTTTT
1 TTTTATTTTAACTTTGATT-ATTTCTCTTTT
***
7929726 TTCGCTTTTAACTTTGA-T-TTTCTCTTTT
1 TTTTATTTTAACTTTGATTATTTCTCTTTT
7929754 TTTTATTTT
1 TTTTATTTT
7929763 GATTTTTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
28 16 0.53
30 1 0.03
31 13 0.43
ACGTcount: A:0.12, C:0.12, G:0.07, T:0.69
Consensus pattern (30 bp):
TTTTATTTTAACTTTGATTATTTCTCTTTT
Found at i:7943857 original size:13 final size:13
Alignment explanation
Indices: 7943839--7943881 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
7943829 ACTTAGTGTC
*
7943839 ATGCAAGCTCGAT
1 ATGCAAACTCGAT
*
7943852 ATGCAAACTCAAT
1 ATGCAAACTCGAT
* *
7943865 GTGTAAACTCGAT
1 ATGCAAACTCGAT
7943878 ATGC
1 ATGC
7943882 GAGCTCAGTG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (13 bp):
ATGCAAACTCGAT
Found at i:7949173 original size:14 final size:14
Alignment explanation
Indices: 7949150--7949196 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
7949140 TTAAATTTTC
* *
7949150 TTAAGGTTAATTAG
1 TTAAGCTTAATTAA
7949164 TTAAGCTTAAGTTAA
1 TTAAGCTTAA-TTAA
*
7949179 TTAAACTTAATTAA
1 TTAAGCTTAATTAA
7949193 TTAA
1 TTAA
7949197 TCCCTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (14 bp):
TTAAGCTTAATTAA
Found at i:7950029 original size:14 final size:14
Alignment explanation
Indices: 7950010--7950049 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7950000 TTGTTTGCCA
*
7950010 GTAAAATGTTTTCC
1 GTAAAATGATTTCC
*
7950024 GTAAAATGATTTCT
1 GTAAAATGATTTCC
*
7950038 GGAAAATGATTT
1 GTAAAATGATTT
7950050 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
GTAAAATGATTTCC
Found at i:7950058 original size:20 final size:20
Alignment explanation
Indices: 7950033--7950071 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7950023 CGTAAAATGA
7950033 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7950053 TTTCTGGAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
7950072 GAAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7951316 original size:10 final size:10
Alignment explanation
Indices: 7951301--7951326 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7951291 TCATTAAGTG
7951301 CTAACAAATA
1 CTAACAAATA
7951311 CTAACAAATA
1 CTAACAAATA
7951321 CTAACA
1 CTAACA
7951327 GATCAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (10 bp):
CTAACAAATA
Found at i:7956207 original size:34 final size:34
Alignment explanation
Indices: 7956169--7956262 Score: 116
Period size: 34 Copynumber: 2.8 Consensus size: 34
7956159 AACCATTTAG
*
7956169 CACACCAGATACTCGTATGAGCTAATCCATCCAA
1 CACACCAAATACTCGTATGAGCTAATCCATCCAA
* * * * *
7956203 CACACTAAATACTCGTATAACCTAATCCATCTAG
1 CACACCAAATACTCGTATGAGCTAATCCATCCAA
* *
7956237 CACACCAAATGCTCGTATGAGATAAT
1 CACACCAAATACTCGTATGAGCTAAT
7956263 TGATCCAGAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.37, C:0.29, G:0.11, T:0.23
Consensus pattern (34 bp):
CACACCAAATACTCGTATGAGCTAATCCATCCAA
Found at i:7959943 original size:73 final size:77
Alignment explanation
Indices: 7959815--7959956 Score: 177
Period size: 73 Copynumber: 1.9 Consensus size: 77
7959805 CTTATGAGCA
* * * *
7959815 TCCCGATATATGGCTCTTTCATGAGCTTCGCAATTAATGGCTCCCCGGAGCTTCCCGATAT-TGG
1 TCCCGATATATAGCTCTTTCATGAGCTTCGCAATTAATGGCTCACAGGAGATTCCCGATATATGG
7959879 CTCGCTTGAACT
66 CTCGCTTGAACT
* * *
7959891 TCCCGAT-TATAGC-CTTT-ATGAGCTTC-CTATTACATGGCTCACATGAGATTCCCGTTATATG
1 TCCCGATATATAGCTCTTTCATGAGCTTCGCAATTA-ATGGCTCACAGGAGATTCCCGATATATG
7959952 GCTCG
65 GCTCG
7959957 AGAGAGAGAG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
72 5 0.09
73 29 0.51
74 11 0.19
75 5 0.09
76 7 0.12
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (77 bp):
TCCCGATATATAGCTCTTTCATGAGCTTCGCAATTAATGGCTCACAGGAGATTCCCGATATATGG
CTCGCTTGAACT
Found at i:7965391 original size:102 final size:102
Alignment explanation
Indices: 7965215--7965406 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 102
7965205 ATAACTCATG
* *
7965215 TGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
7965280 CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
66 CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
* * *
7965317 TGTAGTACTATGTGCAGGCTACTATGTGTAC-CGA-ATGGTATTGGTCACATGTGTAGTACTAAG
1 TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATA-GTTA-TGGTCACATGTGTAGTACTAAG
* *
7965380 TGTAGGCTACTATGTGTACCGGATAGC
64 TGCAAGCTACTATGTGTACCGGATAGC
7965407 ATTGATCATA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
100 1 0.01
101 5 0.06
102 75 0.93
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (102 bp):
TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
Found at i:7965399 original size:51 final size:50
Alignment explanation
Indices: 7965211--7965400 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 50
7965201 CATGATAACT
* * * ** *
7965211 CATGTGTAGTACTATGTGTAGGCTACTATGAGTA-TAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGA-ATGGTT-TGGTCA
* * * *
7965262 CATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAGCTTTGGTTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAAT-GGTTTGGTCA
* * *
7965313 CGTATGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGTATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATGGT-TTGGTCA
*
7965364 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG
7965401 GATAGCATTG
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 2 0.02
51 111 0.97
52 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATGGTTTGGTCA
Found at i:7971380 original size:47 final size:47
Alignment explanation
Indices: 7971294--7971384 Score: 114
Period size: 47 Copynumber: 1.9 Consensus size: 47
7971284 TCTTGGCTTA
* * * *
7971294 AAAATGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCGT
1 AAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCGT
7971341 AAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 AAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
7971385 AGAATTCCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 4 0.11
47 34 0.89
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.20
Consensus pattern (47 bp):
AAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCGT
Found at i:7978517 original size:27 final size:27
Alignment explanation
Indices: 7978487--7978541 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
7978477 CAAATTTTCG
*
7978487 AAGGTTACAAGGCCTAAAATGGTTCAC
1 AAGGTTACAAGGCCTAAAATGGTCCAC
* *
7978514 AAGGTTATAAGTCCTAAAATGGTCCAC
1 AAGGTTACAAGGCCTAAAATGGTCCAC
7978541 A
1 A
7978542 CGGCCTGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
AAGGTTACAAGGCCTAAAATGGTCCAC
Found at i:7982267 original size:20 final size:20
Alignment explanation
Indices: 7982242--7982287 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
7982232 ATCTTGATCT
7982242 TTACTTCTTTACTTACTCT-C
1 TTACTTCTTTACTTACT-TGC
*
7982262 TTACTTGTTTACTTACTTGC
1 TTACTTCTTTACTTACTTGC
7982282 TTACTT
1 TTACTT
7982288 AAATAACTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.15, C:0.24, G:0.04, T:0.57
Consensus pattern (20 bp):
TTACTTCTTTACTTACTTGC
Found at i:7983968 original size:6 final size:6
Alignment explanation
Indices: 7983959--7984012 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
7983949 TTTATTTTCC
* * * *
7983959 TTTTAG TTTTAG TTTTCG TTTTAG TTTTAT TTTTA- TCTTTAT TTTTAT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG T-TTTAG TTTTAG
7984007 TTTTAG
1 TTTTAG
7984013 CTATTTTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 1 0.02
6 40 0.95
7 1 0.02
ACGTcount: A:0.15, C:0.04, G:0.09, T:0.72
Consensus pattern (6 bp):
TTTTAG
Found at i:7983980 original size:18 final size:17
Alignment explanation
Indices: 7983949--7983991 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 17
7983939 ATTGAGTTTA
7983949 TTTATTTTCCTTTTAGT
1 TTTATTTTCCTTTTAGT
*
7983966 TTTAGTTTTCGTTTTAGT
1 TTTA-TTTTCCTTTTAGT
7983984 TTTATTTT
1 TTTATTTT
7983992 TATCTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.12, C:0.07, G:0.09, T:0.72
Consensus pattern (17 bp):
TTTATTTTCCTTTTAGT
Found at i:7983992 original size:18 final size:18
Alignment explanation
Indices: 7983949--7984010 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
7983939 ATTGAGTTTA
*
7983949 TTTA-TTTTCCTTTTAGT
1 TTTATTTTTCATTTTAGT
* *
7983966 TTTAGTTTTCGTTTTAGT
1 TTTATTTTTCATTTTAGT
*
7983984 TTTATTTTT-ATCTTTATT
1 TTTATTTTTCAT-TTTAGT
7984002 TTTATTTTT
1 TTTATTTTT
7984011 AGCTATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
17 5 0.13
18 34 0.87
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.74
Consensus pattern (18 bp):
TTTATTTTTCATTTTAGT
Found at i:7984025 original size:6 final size:6
Alignment explanation
Indices: 7983977--7984027 Score: 57
Period size: 6 Copynumber: 8.0 Consensus size: 6
7983967 TTAGTTTTCG
* *
7983977 TTTTAG TTTTAT TTTTAT CTTTAT TTTTAT TTTTAGCT ATTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA--T -TTTTAT TTTTAT
7984028 GTTCTTAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
6 32 0.82
7 1 0.03
8 1 0.03
9 5 0.13
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:7985875 original size:30 final size:30
Alignment explanation
Indices: 7985841--7985904 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
7985831 CGGCAAATTT
* * *
7985841 TGTGAGCCACATAGGCTGGGCACATGCCCA
1 TGTGAGACACATAGGCTGGACACACGCCCA
*
7985871 TGTGAGACACATAGGCTGGACACACGCCCC
1 TGTGAGACACATAGGCTGGACACACGCCCA
7985901 TGTG
1 TGTG
7985905 CCAGCCCGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (30 bp):
TGTGAGACACATAGGCTGGACACACGCCCA
Found at i:7986088 original size:45 final size:45
Alignment explanation
Indices: 7986016--7986111 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
7986006 AGAGACAGGG
* *
7986016 GAGCCATCAGAGCAGATCAAAGAAAACACTCAAGGAACACCATTA
1 GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
* * * *
7986061 GAGCCATCAGATAAGATCGAAGGAAACACTCAAAGAACACCATTG
1 GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
7986106 GAGCCA
1 GAGCCA
7986112 CTTCTGAAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.45, C:0.24, G:0.20, T:0.11
Consensus pattern (45 bp):
GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
Found at i:7996513 original size:46 final size:44
Alignment explanation
Indices: 7996454--7996548 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 44
7996444 ACCTAATTTG
* *
7996454 TTGTAAATGAGCAAGGTCAAAGGGTTAAAGTTTTTTGAAAGAATT
1 TTGTAAATGAGCAAGGTCAAAGAGTTAAAATTTTTT-AAAGAATT
* * *
7996499 TTGTGAAATTAGCAAGGTGACAGAGTTAAAATTTTTTAAAGAATT
1 TTGT-AAATGAGCAAGGTCAAAGAGTTAAAATTTTTTAAAGAATT
7996544 TTGTA
1 TTGTA
7996549 TGATCAACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 16 0.36
46 27 0.61
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (44 bp):
TTGTAAATGAGCAAGGTCAAAGAGTTAAAATTTTTTAAAGAATT
Found at i:8002596 original size:59 final size:59
Alignment explanation
Indices: 8002533--8002696 Score: 184
Period size: 59 Copynumber: 2.8 Consensus size: 59
8002523 TAGATCAAAT
* * *
8002533 GCAAAGAGTTTGAGTATGTGTTGCTAGGACTTGTGAACAAGTGCTAGAAAAAAATGAGG
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
** * * * * *
8002592 GCAAAGAGTTTGAGCCTGTGTTGCTTGGACTAGGGAACAAGTGTTAGAATAGAATGAAT
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
* * * ***
8002651 GCATAGGGTTTGAATACAAGTTGCTTGGACTTGGGAACAAGTGCTA
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTA
8002697 TATAGGGGTC
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 85 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (59 bp):
GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
Found at i:8014007 original size:45 final size:44
Alignment explanation
Indices: 8013946--8014033 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
8013936 AGGGAAACCC
* ** *
8013946 ATGGCAAAGTTGGAAGTTTTCGTAAAAGATTTTAAAGAACCCACA
1 ATGGCAAAGTTAGAAGTTTTAAT-AAAGATGTTAAAGAACCCACA
*
8013991 ATGGCAAAGTTAGAAGTTTTAATGAAGATGTTAAAGAACCCAC
1 ATGGCAAAGTTAGAAGTTTTAATAAAGATGTTAAAGAACCCAC
8014034 GTTAAAGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 18 0.47
45 20 0.53
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.26
Consensus pattern (44 bp):
ATGGCAAAGTTAGAAGTTTTAATAAAGATGTTAAAGAACCCACA
Found at i:8014986 original size:105 final size:105
Alignment explanation
Indices: 8014869--8015080 Score: 415
Period size: 105 Copynumber: 2.0 Consensus size: 105
8014859 AACTCCGAAA
8014869 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
1 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
8014934 TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
66 TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
*
8014974 TACCCTCGAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
1 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
8015039 TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
66 TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
8015079 TA
1 TA
8015081 TTCGACCTCC
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (105 bp):
TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
Found at i:8027630 original size:163 final size:161
Alignment explanation
Indices: 8027408--8027734 Score: 503
Period size: 163 Copynumber: 2.0 Consensus size: 161
8027398 ACTAAGTTTG
8027408 ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
1 ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
* * * * *
8027473 TATTAACAAATTATCTTTGTATGCGTTTGCCACACTATTAACCGAATGCCATATAGGAGTTAAGA
66 TATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAACA
8027538 ATGCTATTGCTAACATTAGCATTTTCCATCCA
131 ATGCTATTGCTAACATTAGCA-TTTCCATCCA
* *
8027570 ATTAATTAAAACTTGAATAAGTTAAATGATTATTTTAAAAAAAA-TATTTTGTGACTGTAGGTGA
1 ATTAATT-AAACTTGAA-AAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGA
* ** * *
8027634 CATGTTAGGAAATCATATTTGTATGCATTTGCCACACCATTAACTGAATGCCATATGGGAGTTAA
64 CATATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAA
*
8027699 CAATGCTATTGCTGACATTAGCATTTCCATCCA
129 CAATGCTATTGCTAACATTAGCATTTCCATCCA
8027732 ATT
1 ATT
8027735 TGGGTTTTGA
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
162 20 0.13
163 105 0.70
164 25 0.17
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (161 bp):
ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
TATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAACA
ATGCTATTGCTAACATTAGCATTTCCATCCA
Found at i:8031007 original size:39 final size:39
Alignment explanation
Indices: 8030925--8031041 Score: 200
Period size: 39 Copynumber: 3.0 Consensus size: 39
8030915 GGCTTAGAGT
* *
8030925 TAGACTTTAGTTTTATTTTTATTGGGCT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
8030963 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
*
8031002 TAGACTTTAGTTTTAGTTTTATTGGGTTGTGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
8031041 T
1 T
8031042 TGAGTTGGAT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 26 0.35
39 49 0.65
ACGTcount: A:0.18, C:0.03, G:0.28, T:0.50
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
Found at i:8031696 original size:13 final size:13
Alignment explanation
Indices: 8031678--8031714 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
8031668 CTTTTATAAA
8031678 AGATATTTTATAT
1 AGATATTTTATAT
*
8031691 AGATATTTTTTAT
1 AGATATTTTATAT
8031704 AGATATTTTAT
1 AGATATTTTAT
8031715 TATTTTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (13 bp):
AGATATTTTATAT
Found at i:8031703 original size:15 final size:14
Alignment explanation
Indices: 8031664--8031712 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 14
8031654 TATTAATAAA
*
8031664 ATATCTTTTATAAAAG
1 ATAT-TTTTAT-ATAG
8031680 ATA-TTTTATATAG
1 ATATTTTTATATAG
8031693 ATATTTTT-TATAG
1 ATATTTTTATATAG
8031706 ATATTTT
1 ATATTTT
8031713 ATTATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 18 0.58
14 10 0.32
16 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (14 bp):
ATATTTTTATATAG
Found at i:8037418 original size:171 final size:171
Alignment explanation
Indices: 8037127--8037468 Score: 596
Period size: 171 Copynumber: 2.0 Consensus size: 171
8037117 GGAACGTAGT
* *
8037127 GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTCATCTTGGAAAATTGGACTTT
1 GAGTTATGAACACAACTTGCCCTTTTAACTTTCATGAAATTCTTCATCTTGAAAAATTGGACTTT
* *
8037192 CATGTATCTCTCTTTGGCGAATACCTTTTCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
66 CATGTATCTCTCTTTGGCAAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
8037257 TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
131 TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
8037298 GAGTTATGAACACAACTTGCCCTTTTAACTTTCATGAAATTCCTT-ATCTTGAAAAATTGGACTT
1 GAGTTATGAACACAACTTGCCCTTTTAACTTTCATGAAATT-CTTCATCTTGAAAAATTGGACTT
* * * *
8037362 TCATGTATCTCTCTTTGGCAAATACCTTTCCATTTTCAGTTTTATATTTTCATACTTATACGCCT
65 TCATGTATCTCTCTTTGGCAAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCT
8037427 CTCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
130 CTCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
8037469 TAGCTCTAGG
Statistics
Matches: 162, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
171 159 0.98
172 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (171 bp):
GAGTTATGAACACAACTTGCCCTTTTAACTTTCATGAAATTCTTCATCTTGAAAAATTGGACTTT
CATGTATCTCTCTTTGGCAAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
Found at i:8041693 original size:43 final size:42
Alignment explanation
Indices: 8041628--8041723 Score: 138
Period size: 43 Copynumber: 2.3 Consensus size: 42
8041618 GCGTCGTTAA
* * * *
8041628 CTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGATCATGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACA-AAC
*
8041671 CTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACAAAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACAAAC
8041713 CTTTAGCGGCG
1 CTTTAGCGGCG
8041724 ATTCTCGCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 13 0.27
43 35 0.73
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAACAAAC
Found at i:8041859 original size:42 final size:42
Alignment explanation
Indices: 8041784--8041872 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
8041774 AATCAAATAT
* * *
8041784 CTTTAGCGGCGCTTTTCATACAAAAGCCGCTAAAGAACA-AAC
1 CTTTAGCGGCGCTTCTCACACAAAAGCCACTAAA-AACATAAC
*
8041826 CTTTAGCGGCGCTTCTCGCA-AAAACGCCACTAAAAACATAAC
1 CTTTAGCGGCGCTTCTCACACAAAA-GCCACTAAAAACATAAC
8041868 CTTTA
1 CTTTA
8041873 AACAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 8 0.20
42 33 0.80
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (42 bp):
CTTTAGCGGCGCTTCTCACACAAAAGCCACTAAAAACATAAC
Found at i:8043389 original size:23 final size:23
Alignment explanation
Indices: 8043363--8043435 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
8043353 AGTGCCACAT
8043363 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
8043386 TGATATGTAGCC-ATAGCTACCAC
1 TGATATGTAGCCGA-AGCTACCAC
*
8043409 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
8043432 TGAT
1 TGAT
8043436 CAATAACACT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.02
23 44 0.96
24 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:8046848 original size:43 final size:43
Alignment explanation
Indices: 8046801--8046942 Score: 187
Period size: 43 Copynumber: 3.3 Consensus size: 43
8046791 GTTTTTAGAA
* *
8046801 ACAAACGCCGCTATAGAATAAGACTTTTAGCGGCGCTTCTCCT
1 ACAAACGCCGCTATAGAATAAGACTTTTAGCGACGCTTCTCCC
* * *
8046844 ACAAACGCCGCTATAAAACAAGACCTTTAGCGACGCTTCTCCC
1 ACAAACGCCGCTATAGAATAAGACTTTTAGCGACGCTTCTCCC
** * *
8046887 ACAAACGCCGCTATAG-ATCATCACTTTTAGCGACACTTTTCCC
1 ACAAACGCCGCTATAGAAT-AAGACTTTTAGCGACGCTTCTCCC
8046930 ACAAACGCCGCTA
1 ACAAACGCCGCTA
8046943 AAAACATATC
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 85 0.99
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (43 bp):
ACAAACGCCGCTATAGAATAAGACTTTTAGCGACGCTTCTCCC
Found at i:8047276 original size:43 final size:43
Alignment explanation
Indices: 8047210--8047296 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
8047200 ACATATGCAA
* * *
8047210 GGTAATAAAACATAAAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
* *
8047253 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
8047296 G
1 G
8047297 TACATCATTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.33
Consensus pattern (43 bp):
GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
Found at i:8051894 original size:7 final size:7
Alignment explanation
Indices: 8051884--8051921 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
8051874 CCTAAATATC
*
8051884 TAACTCT
1 TAACCCT
8051891 TAACCCT
1 TAACCCT
8051898 TAACCCT
1 TAACCCT
8051905 TAACTCC-
1 TAAC-CCT
8051912 TAACCCT
1 TAACCCT
8051919 TAA
1 TAA
8051922 ACATTAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 2 0.07
7 24 0.86
8 2 0.07
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.32
Consensus pattern (7 bp):
TAACCCT
Found at i:8051928 original size:21 final size:21
Alignment explanation
Indices: 8051884--8051944 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
8051874 CCTAAATATC
* * *
8051884 TAACTCTTAACCCTTAACCCT
1 TAACTCCTAACCCTTAAACAT
8051905 TAACTCCTAACCCTTAAACAT
1 TAACTCCTAACCCTTAAACAT
* *
8051926 TAAATCCCAACCCTTAAAC
1 TAACTCCTAACCCTTAAAC
8051945 CATAATCCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (21 bp):
TAACTCCTAACCCTTAAACAT
Found at i:8052060 original size:21 final size:18
Alignment explanation
Indices: 8052018--8052069 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 18
8052008 CAAAACACGC
*
8052018 AAAAAACTGAACTGGATA
1 AAAAAACTGAACCGGATA
8052036 AAAAAACTGAACCGAGCACTA
1 AAAAAACTGAACCG-G-A-TA
*
8052057 AAAATACTGAACC
1 AAAAAACTGAACC
8052070 AAGATGGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 13 0.45
19 1 0.03
20 1 0.03
21 14 0.48
ACGTcount: A:0.54, C:0.19, G:0.13, T:0.13
Consensus pattern (18 bp):
AAAAAACTGAACCGGATA
Found at i:8052612 original size:41 final size:40
Alignment explanation
Indices: 8052553--8052837 Score: 331
Period size: 41 Copynumber: 7.0 Consensus size: 40
8052543 ATTTTAAATT
* *
8052553 CCTGAGCATTAGTGGCGCTTCTTAGAAAACGCCGCTAAAGT
1 CCTGAGCATTAGTGGCGCTTCTCA-AAAACGCCGCTAAAGC
* * * *
8052594 CTTGAGCATTCGTGGCGCTT-TAACAAAAATGCTGCTAAAGC
1 CCTGAGCATTAGTGGCGCTTCT--CAAAAACGCCGCTAAAGC
*
8052635 CCTGAGCATTAGTGGCGCTTTCTCAAAAACGCCGCTACAGC
1 CCTGAGCATTAGTGGCGC-TTCTCAAAAACGCCGCTAAAGC
* * *
8052676 CCTAAGCATTAGCGGCGCTTTATCAAAAACGCCGCTAAAGC
1 CCTGAGCATTAGTGGCGC-TTCTCAAAAACGCCGCTAAAGC
* *
8052717 CCTGAGCATTAGCGGCGCTT-TCCAAAAAACGCCGCTAAATC
1 CCTGAGCATTAGTGGCGCTTCT-C-AAAAACGCCGCTAAAGC
* * *
8052758 CCTGAGTATTAGTGGCGCTTTCCCAAAAACGCTGCTAAAGC
1 CCTGAGCATTAGTGGCGC-TTCTCAAAAACGCCGCTAAAGC
*
8052799 CCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 CCTGAGCATTAGTGGCGC-TTCTCAAAAACGCCGCTAAA
8052838 ACCCCCAAAG
Statistics
Matches: 210, Mismatches: 26, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
39 1 0.00
40 4 0.02
41 198 0.94
42 6 0.03
43 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTGAGCATTAGTGGCGCTTCTCAAAAACGCCGCTAAAGC
Found at i:8052693 original size:82 final size:82
Alignment explanation
Indices: 8052553--8052837 Score: 394
Period size: 82 Copynumber: 3.5 Consensus size: 82
8052543 ATTTTAAATT
* * * * *
8052553 CCTGAGCATTAGTGGCGC-TTCTTAGAAAACGCCGCTAAAGTCTTGAGCATTCGTGGCGCTTTAA
1 CCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTAA
*
8052617 CAAAAATGCTGCTAAAGC
65 CAAAAACGCTGCTAAAGC
* * * * *
8052635 CCTGAGCATTAGTGGCGCTTTCTCAAAAACGCCGCTACAGCCCTAAGCATTAGCGGCGCTTTATC
1 CCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTAAC
*
8052700 AAAAACGCCGCTAAAGC
66 AAAAACGCTGCTAAAGC
* * **
8052717 CCTGAGCATTAGCGGCGCTTTC-CAAAAAACGCCGCTAAATCCCTGAGTATTAGTGGCGCTTTCC
1 CCTGAGCATTAGCGGCGCTTTCTC-AAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTAA
8052781 CAAAAACGCTGCTAAAGC
65 CAAAAACGCTGCTAAAGC
8052799 CCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 CCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
8052838 ACCCCCAAAG
Statistics
Matches: 181, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
81 1 0.01
82 174 0.96
83 6 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (82 bp):
CCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTAAC
AAAAACGCTGCTAAAGC
Found at i:8052776 original size:123 final size:122
Alignment explanation
Indices: 8052557--8052837 Score: 377
Period size: 123 Copynumber: 2.3 Consensus size: 122
8052547 TAAATTCCTG
* * * * *
8052557 AGCATTAGTGGCGCTTCTT-AGAAAACGCCGCTAAAGTCTTGAGCATTCGTGGCGCTTTAACAAA
1 AGCATTAGCGGCGCTT-TTCA-AAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTAACAAA
* * * *
8052621 AATGCTGCTAAAGCCCTGAGCATTAGTGGCGCTTTCTCAAAAACGCCGCTACAGCCCTA
64 AACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTA
*
8052680 AGCATTAGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-CCAAAA
1 AGCATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTAAC-AAA
* * * *
8052744 AACGCCGCTAAATCCCTGAGTATTAGTGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTG
64 AACGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTA
8052803 AGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 AGCATTAGCGGCGCTTT-TCAAAAACGCCGCTAAA
8052838 ACCCCCAAAG
Statistics
Matches: 140, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
122 2 0.01
123 137 0.98
124 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (122 bp):
AGCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTAACAAAAA
CGCCGCTAAAGCCCTGAGCATTAGTGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTA
Found at i:8052946 original size:39 final size:40
Alignment explanation
Indices: 8052902--8053011 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
8052892 TTTGGAAAAT
* *
8052902 GCCGCTAATGCTTG-T-TTGTAGCGGCGTTTTCCAAAAAGC
1 GCCGCTAATGCTCGATCTT-TAGCGGCATTTTCCAAAAAGC
* *
8052941 GCCGCTAATACTCGATCTTTAGCGGCATTTTCCAAAGAGC
1 GCCGCTAATGCTCGATCTTTAGCGGCATTTTCCAAAAAGC
* * *
8052981 GCCGCTAATGTTCGATCTTTAGTGGCGTTTT
1 GCCGCTAATGCTCGATCTTTAGCGGCATTTT
8053012 TTATCCAAAC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 12 0.20
40 47 0.77
41 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (40 bp):
GCCGCTAATGCTCGATCTTTAGCGGCATTTTCCAAAAAGC
Found at i:8052964 original size:40 final size:40
Alignment explanation
Indices: 8052920--8053011 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
8052910 TGCTTGTTTG
8052920 TAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCGATCTT
1 TAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCGATCTT
* * **
8052960 TAGCGGCATTTTCCAAAGAGCGCCGCTAATGTTCGATCTT
1 TAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCGATCTT
*
8053000 TAGTGGCGTTTT
1 TAGCGGCGTTTT
8053012 TTATCCAAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.32
Consensus pattern (40 bp):
TAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCGATCTT
Found at i:8053035 original size:12 final size:12
Alignment explanation
Indices: 8053018--8053043 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8053008 TTTTTTATCC
8053018 AAACGCCGCTAA
1 AAACGCCGCTAA
8053030 AAACGCCGCTAA
1 AAACGCCGCTAA
8053042 AA
1 AA
8053044 GCCGTAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:8054923 original size:11 final size:11
Alignment explanation
Indices: 8054909--8054968 Score: 65
Period size: 10 Copynumber: 5.7 Consensus size: 11
8054899 AAAATAAAAG
*
8054909 TTTAAAATCTT
1 TTTAAAATCAT
8054920 TTTAAAA--AT
1 TTTAAAATCAT
*
8054929 TTTAAAA-AAT
1 TTTAAAATCAT
8054939 TTTAAAATC-T
1 TTTAAAATCAT
8054949 TTTAAAATTCAT
1 TTTAAAA-TCAT
8054961 TTTAAAAT
1 TTTAAAAT
8054969 TTTAAATCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 8 0.19
10 17 0.40
11 10 0.23
12 8 0.19
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (11 bp):
TTTAAAATCAT
Found at i:8054932 original size:20 final size:20
Alignment explanation
Indices: 8054904--8054974 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
8054894 TTATAAAAAT
* *
8054904 AAAAGTTTAAAATCTTTTTA
1 AAAATTTTAAAATCATTTTA
*
8054924 AAAATTTTAAAA-AATTTTA
1 AAAATTTTAAAATCATTTTA
*
8054943 AAATCTTTTAAAATTCATTTT-
1 AAA-ATTTTAAAA-TCATTTTA
8054964 AAAATTTTAAA
1 AAAATTTTAAA
8054975 TCACGAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 8 0.19
20 26 0.62
21 3 0.07
22 5 0.12
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (20 bp):
AAAATTTTAAAATCATTTTA
Found at i:8054965 original size:12 final size:12
Alignment explanation
Indices: 8054937--8054969 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8054927 ATTTTAAAAA
8054937 ATTTTAAAA-TC
1 ATTTTAAAATTC
8054948 -TTTTAAAATTC
1 ATTTTAAAATTC
8054959 ATTTTAAAATT
1 ATTTTAAAATT
8054970 TTAAATCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 10 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTAAAATTC
Found at i:8054968 original size:30 final size:28
Alignment explanation
Indices: 8054903--8054974 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 28
8054893 ATTATAAAAA
*
8054903 TAAAAGTTTAAAATCTTTTTAAAAATTT
1 TAAAATTTTAAAATCTTTTTAAAAATTT
8054931 TAAAAAATTTTAAAATC-TTTTAAAATTCATTT
1 T--AAAATTTTAAAATCTTTTTAAAA---ATTT
8054963 TAAAATTTTAAA
1 TAAAATTTTAAA
8054975 TCACGAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
28 1 0.03
29 8 0.21
30 24 0.63
32 5 0.13
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (28 bp):
TAAAATTTTAAAATCTTTTTAAAAATTT
Found at i:8056571 original size:41 final size:41
Alignment explanation
Indices: 8056486--8056767 Score: 402
Period size: 41 Copynumber: 6.8 Consensus size: 41
8056476 AGATTTTATT
* *
8056486 ATTAGTGGCGCTTTTTCAAAAACGCCGTCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACG-C--CGCTAAAGCCCCGAGC
*
8056530 ACTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* * *
8056571 ATTAGAGGCGCTTTCTCAAAAACGCTGCTAAAGTCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* **
8056612 ATTAGCGGTGCTTTCTCAAAAACTACGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* * *
8056653 ATTAGCGACGTTTTCTCAAAAAACGCCGCTAAAGCCCTGAGC
1 ATTAGCGGCGCTTTCTC-AAAAACGCCGCTAAAGCCCCGAGC
* *
8056695 ATTAGCGACGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
8056736 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
8056768 ACCCTATTTT
Statistics
Matches: 213, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
41 154 0.72
42 37 0.17
43 1 0.00
44 21 0.10
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (41 bp):
ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
Found at i:8056708 original size:124 final size:123
Alignment explanation
Indices: 8056486--8056767 Score: 411
Period size: 124 Copynumber: 2.3 Consensus size: 123
8056476 AGATTTTATT
* * * *
8056486 ATTAGTGGCGCTTTTTCAAAAACGCCGTCGCTAAAGCCCCGAGCACTAGCGGCGCTTTCTCAAAA
1 ATTAGCGGCGCTTTCTCAAAAA---CGACGCTAAAGCCCCGAGCACTAGCGACGCTTTCTCAAAA
* *
8056551 ACGCCGCTAAAGCCCCGAGCATTAGAGGCGCTTTCTCAAAAACGCTGCTAAAGTCCCGAGC
63 ACGCCGCTAAAGCCCCGAGCATTAGAGACGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
* * * *
8056612 ATTAGCGGTGCTTTCTCAAAAACTACGCTAAAGCCCCGAGCATTAGCGACGTTTTCTCAAAAAAC
1 ATTAGCGGCGCTTTCTCAAAAACGACGCTAAAGCCCCGAGCACTAGCGACGCTTTCTC-AAAAAC
* *
8056677 GCCGCTAAAGCCCTGAGCATTAGCGACGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
65 GCCGCTAAAGCCCCGAGCATTAGAGACGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
*
8056736 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTCTCAAAAACGACGCTAAA
8056768 ACCCTATTTT
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
123 31 0.22
124 90 0.64
126 19 0.14
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (123 bp):
ATTAGCGGCGCTTTCTCAAAAACGACGCTAAAGCCCCGAGCACTAGCGACGCTTTCTCAAAAACG
CCGCTAAAGCCCCGAGCATTAGAGACGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
Found at i:8058153 original size:30 final size:31
Alignment explanation
Indices: 8058117--8058199 Score: 143
Period size: 30 Copynumber: 2.7 Consensus size: 31
8058107 TAACTTGGTG
8058117 TAATTTTAGCTTGTGTGAGCAACCCTAG-TA
1 TAATTTTAGCTTGTGTGAGCAACCCTAGATA
*
8058147 TAATTTTAGCTTGTGTGAGCAA-CCTTGATA
1 TAATTTTAGCTTGTGTGAGCAACCCTAGATA
8058177 TAATTTTAGCTTGTGTGAGCAAC
1 TAATTTTAGCTTGTGTGAGCAAC
8058200 TTAGCCACCT
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
29 4 0.08
30 46 0.92
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (31 bp):
TAATTTTAGCTTGTGTGAGCAACCCTAGATA
Found at i:8059214 original size:95 final size:95
Alignment explanation
Indices: 8059051--8059235 Score: 307
Period size: 95 Copynumber: 1.9 Consensus size: 95
8059041 AATTGAACAA
* * * * *
8059051 GCTTGAATGATGAATGACTGAATTGTATGATATTGAATGGTTGGTTTAGATGGTTATATGCTTGA
1 GCTTGAATGATGAACGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
*
8059116 ATTGGTTGATATTGGCATTGTATAAAGCAT
66 ATTGGTTGATATTGGCATGGTATAAAGCAT
*
8059146 GCTTGGATGATGAACGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
1 GCTTGAATGATGAACGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
8059211 ATTGGTTGATATTGGCATGGTATAA
66 ATTGGTTGATATTGGCATGGTATAA
8059236 TAACATATGG
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 83 1.00
ACGTcount: A:0.30, C:0.05, G:0.26, T:0.39
Consensus pattern (95 bp):
GCTTGAATGATGAACGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
ATTGGTTGATATTGGCATGGTATAAAGCAT
Found at i:8064492 original size:27 final size:27
Alignment explanation
Indices: 8064462--8064516 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
8064452 AAGCAGAAGT
8064462 TAGTTCGAGTTGCTCTTGCAACGAATG
1 TAGTTCGAGTTGCTCTTGCAACGAATG
8064489 TAGTTCGAGTTGCTCTTGCAACGAATG
1 TAGTTCGAGTTGCTCTTGCAACGAATG
8064516 T
1 T
8064517 GGTGTTTCGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (27 bp):
TAGTTCGAGTTGCTCTTGCAACGAATG
Found at i:8070519 original size:18 final size:19
Alignment explanation
Indices: 8070476--8070519 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
8070466 TATATTATTT
*
8070476 AATTTTCTTTAAATGCGTA
1 AATTTTTTTTAAATGCGTA
* *
8070495 TATTTTTTTTATATGC-TA
1 AATTTTTTTTAAATGCGTA
8070513 AATTTTT
1 AATTTTT
8070520 GGACATGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (19 bp):
AATTTTTTTTAAATGCGTA
Found at i:8070713 original size:18 final size:18
Alignment explanation
Indices: 8070692--8070750 Score: 100
Period size: 18 Copynumber: 3.3 Consensus size: 18
8070682 TCAATTCGGT
8070692 TAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTTGGG
*
8070710 TAATTCGGTTAATTAGGG
1 TAATTCGGTTAATTTGGG
*
8070728 TAATTCGGTTAATTTGGT
1 TAATTCGGTTAATTTGGG
8070746 TAATT
1 TAATT
8070751 TTTAACCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGGG
Found at i:8070751 original size:9 final size:9
Alignment explanation
Indices: 8070684--8070750 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
8070674 GTAGTGATTC
8070684 AATTCGGTT
1 AATTCGGTT
8070693 AATTCGGTT
1 AATTCGGTT
* *
8070702 AATTTGGGT
1 AATTCGGTT
8070711 AATTCGGTT
1 AATTCGGTT
* *
8070720 AATTAGGGT
1 AATTCGGTT
8070729 AATTCGGTT
1 AATTCGGTT
*
8070738 AATTTGGTT
1 AATTCGGTT
8070747 AATT
1 AATT
8070751 TTTAACCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:8073517 original size:42 final size:43
Alignment explanation
Indices: 8073418--8073522 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
8073408 GAAGCTCATG
*
8073418 AGAGCTAAACAGAAACCCATAAGGGTTGAACAAAAGCTCGTAA
1 AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
* ** *
8073461 A-AGCTGAATGGAAACCCATAAGGGTTAAACAAAAGCTTG-AA
1 AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
* *
8073502 AGAGTTAAACAGAAACTCATA
1 AGAGCTAAACAGAAACCCATA
8073523 TAAGTTAAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
41 3 0.06
42 47 0.92
43 1 0.02
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (43 bp):
AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
Found at i:8081707 original size:51 final size:51
Alignment explanation
Indices: 8081521--8081722 Score: 205
Period size: 51 Copynumber: 4.0 Consensus size: 51
8081511 TGAGAACTCG
* * * * *** *
8081521 TGTGTAGTACTATGTATATGCTACTATGAGTATAAGATAG-TTATGGTCACA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAGCTT-TGATCACA
* *
8081572 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTTTGGTCACA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAGCTTTGATCACA
* * *
8081623 TGTGTAGTACTATA-TGCT-GGCTATTACGTGTACCGGAT-GGTGTTGATCACA
1 TGTGTAGTACTA-AGTG-TAGGCTACTATGTGTACCGGATAGCT-TTGATCACA
* *
8081674 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGAATAGCATTGATCA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAGCTTTGATCA
8081723 TAAGAGTGGT
Statistics
Matches: 126, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
50 4 0.03
51 118 0.94
52 4 0.03
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAGCTTTGATCACA
Found at i:8087272 original size:46 final size:46
Alignment explanation
Indices: 8087202--8087482 Score: 309
Period size: 46 Copynumber: 6.6 Consensus size: 46
8087192 TACGTATGAT
* * *
8087202 CACTTATCTC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8087246 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
8087292 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
8087338 CACTTATCACTTTGTCTCTTGATCAGAT-A-CGT-G-T--AG-T--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8087375 -ACTTATCACTTTGTCACTTGATCAAATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8087410 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAACTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
** *
8087456 CACTTATCACTTTACCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8087483 AGTACTCAAA
Statistics
Matches: 209, Mismatches: 14, Indels: 26
0.84 0.06 0.10
Matches are distributed among these distances:
36 59 0.28
37 1 0.00
38 2 0.01
39 1 0.00
40 3 0.01
42 3 0.01
43 1 0.00
44 11 0.05
45 6 0.03
46 122 0.58
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:8087380 original size:36 final size:36
Alignment explanation
Indices: 8087338--8087444 Score: 178
Period size: 36 Copynumber: 3.0 Consensus size: 36
8087328 CTAAAGCTAC
* *
8087338 CACTTATCACTTTGTCTCTTGATCAGATACGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
* *
8087374 TACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
8087410 CACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTA
8087445 ACTAAAGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:8097645 original size:229 final size:229
Alignment explanation
Indices: 8097237--8097703 Score: 623
Period size: 229 Copynumber: 2.0 Consensus size: 229
8097227 GTACTACTTT
*
8097237 AGTGTATTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTA-CAT
* ** * * * * *
8097302 ATTTTTTGTAAAATGCATTGCATTCATGCTAATTACTGTTTTGATTTTTTTTTTGTTGCATGGTA
65 ATTTTTTGTAAAATGCATTGCACTCATGCTAATTACTCATTTAAATTGTCTTTTGTTGCATAGTA
* * *
8097367 AAATGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTTACACTTGCAT
130 AAACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAG
* * * *
8097432 GGCTGCCTAAATGACACCATCTTAGTACTGGCTGG
195 GGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
* * * * *
8097467 AGTGTGTTAATTTTCCTCAACTGGTTGTTTTGTGTTTTTTAGTTGAGGGAACCCTAGTTGTA-TT
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTG-CTTGTAGTTGAGGGAACCCTAGTTGTACAT
* * * *
8097531 GTCTTTTTGTGAACTGCATTGCACTCATGTTAATTAC-CATTTAAATTGTCTTTTGTTGCATAGT
65 AT-TTTTTGTAAAATGCATTGCACTCATGCTAATTACTCATTTAAATTGTCTTTTGTTGCATAGT
* ** *
8097595 AATACGGCCCATCAAAATTATAACTGTTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCA
129 AAAACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCA
*
8097660 GGGCAGCCTAAAAGACACCTTCTTACTACAGGCTGG
194 GGGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
8097696 AGTGTGTT
1 AGTGTGTT
8097704 TGTTAGTGCC
Statistics
Matches: 205, Mismatches: 30, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
229 119 0.58
230 61 0.30
231 25 0.12
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (229 bp):
AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACATA
TTTTTTGTAAAATGCATTGCACTCATGCTAATTACTCATTTAAATTGTCTTTTGTTGCATAGTAA
AACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAGG
GCAGCCTAAAAGACACCATCTTACTACAGGCTGG
Found at i:8098938 original size:386 final size:384
Alignment explanation
Indices: 8098227--8098998 Score: 1375
Period size: 386 Copynumber: 2.0 Consensus size: 384
8098217 CACGTGTTTC
8098227 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
8098292 CTTAGCGGTTATTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATTTTAGCATTTGTTTATATAA
66 CTTAGCGGTTATTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATTTTAGCATTTGTTTATATAA
*
8098357 TCATGTTCTTGAAAGCCATCTATATTCTTGTTAAAATCTTTTGCTTACTTTCTGACTCGCTTGTG
131 TCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTGTG
* *
8098422 AGCTTGTAACTGGTACACTAAAGATTTAGCATCCAACTGTTTTGTATTTGTCCAAAAGTAAGAAT
196 AGCTTATAACTGGTACACTAAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAGAAT
* *
8098487 ATGTTTTGACATATCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATTTGAGAGCTTAGATA
261 ATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAGATA
8098552 CCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
326 CCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
*
8098611 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTTTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
* *
8098676 CTTAGTGGTTCGTT-AGTATTTCTTTGGTGGTTTATCTTGTGTGATTATTAGCATTTGTTTATAT
66 CTTAGCGGTT-ATTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATT-TTAGCATTTGTTTATAT
*
8098740 AATCATGTTCTTGAAAGCCATCTATGTTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
129 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
* * *
8098805 TGATCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAGAAGTAAG
194 TGAGCTTATAACTGGTACACTA-AAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAG
*
8098870 AATATTTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
258 AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
* *
8098935 ATACCTTCATTTTTACTAGCAGTAATAACAATATCATTAACGTACACAACTAAAAGTATAAT
323 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
8098997 AG
1 AG
8098999 CTGCTTTACT
Statistics
Matches: 370, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
384 105 0.28
385 101 0.27
386 164 0.44
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (384 bp):
AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
CTTAGCGGTTATTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATTTTAGCATTTGTTTATATAA
TCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTGTG
AGCTTATAACTGGTACACTAAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAGAAT
ATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAGATA
CCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
Found at i:8104833 original size:16 final size:18
Alignment explanation
Indices: 8104800--8104835 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
8104790 TATATTAATA
8104800 AAAAATAATTTAATATTT
1 AAAAATAATTTAATATTT
8104818 AAAAAT-ATTT-ATATTT
1 AAAAATAATTTAATATTT
8104834 AA
1 AA
8104836 TCATATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAAATAATTTAATATTT
Found at i:8111727 original size:52 final size:50
Alignment explanation
Indices: 8111666--8111769 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 50
8111656 TGAAGAACTT
* *
8111666 AACCGGATTTTAAATGCACTGTAATCCGTTCTATATGAGATATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAG--ATTCTTATGAA
* *
8111718 AACCGGATTTTAATTGCATTGTAATCCATTATATATGAGATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
8111768 AA
1 AA
8111770 AGGGCATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 13 0.27
52 35 0.73
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (50 bp):
AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
Found at i:8125658 original size:44 final size:44
Alignment explanation
Indices: 8125593--8125812 Score: 209
Period size: 44 Copynumber: 5.1 Consensus size: 44
8125583 TCTACCATAG
* * * *
8125593 CAAATCTTATTTCCCTGAAGTTACAGTAGAGCAGATTGAGGCTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAGGCTA
* *
8125637 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAG---
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAGGCTA
* * * * * *
8125678 CGAATCTTACCTCTCTGATA-TTGCAGTGGAGCAGATTAAAGCTA
1 CAAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAGGCTA
** * *
8125722 CAAATCTTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAGG-TA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-GAGGCTA
* *
8125766 CAAATCTTATCTCCCAAAAGTTGCAGTGGGGCAAGA-TGAGGCTA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGC-AGATTGAGGCTA
8125810 CAA
1 CAA
8125813 CTAATATATC
Statistics
Matches: 144, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
41 32 0.22
42 2 0.01
43 4 0.03
44 100 0.69
45 6 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAGGCTA
Found at i:8134375 original size:3 final size:3
Alignment explanation
Indices: 8134367--8134391 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8134357 GCAGCTGAAC
8134367 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
8134392 TAAGTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8134529 original size:2 final size:2
Alignment explanation
Indices: 8134522--8134583 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
8134512 CTATTGGGAT
8134522 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8134564 TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC
8134584 ATTTTGTGTG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8140530 original size:31 final size:31
Alignment explanation
Indices: 8140492--8140635 Score: 121
Period size: 31 Copynumber: 5.0 Consensus size: 31
8140482 GGCCCATTTT
8140492 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
**
8140523 TATTTTAAAAATATTTTTAAATT-AAAAAA-
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
* **
8140552 -ATTTTAAAAA-A---AAATATTTTAAAAA-
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
** *
8140577 TATTTTAAA-AT-TAAAAAAAATAAAAAAAG
1 TATTTTAAAAATATTTAAAAATTAAAAAAAG
*
8140606 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
8140636 TTTAAAAAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
24 4 0.04
25 6 0.07
26 8 0.09
27 1 0.01
28 20 0.22
29 9 0.10
30 8 0.09
31 30 0.34
32 3 0.03
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:8140538 original size:42 final size:42
Alignment explanation
Indices: 8140492--8140676 Score: 243
Period size: 40 Copynumber: 4.4 Consensus size: 42
8140482 GGCCCATTTT
*
8140492 TATTTTAAAAATTTTAAAAAA-TT-AAAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTAAAAAAATTTAAAAAAAAGTATTTTAAAAA
* *
8140534 TATTTTTAAATTAAAAAAATTTTAAAAAAAAATATTTTAAAAA
1 TATTTTAAAATTAAAAAAA-TTTAAAAAAAAGTATTTTAAAAA
*
8140577 TATTTTAAAATTAAAAAAA-AT-AAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTTAAAAAAAAGTATTTTAAAAA
** *
8140617 TATTTTAAAATTAAAAAAATTTAAAAAAAAGTAAGTAAAAAA
1 TATTTTAAAATTAAAAAAATTTAAAAAAAAGTATTTTAAAAA
*
8140659 TATTTTAAAGTTAAAAAA
1 TATTTTAAAATTAAAAAA
8140677 TAAATATATT
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
40 45 0.35
41 5 0.04
42 41 0.32
43 36 0.28
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (42 bp):
TATTTTAAAATTAAAAAAATTTAAAAAAAAGTATTTTAAAAA
Found at i:8140549 original size:17 final size:17
Alignment explanation
Indices: 8140527--8140571 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
8140517 AAAAAGTATT
8140527 TTAAAAATATTTTTAAA
1 TTAAAAATATTTTTAAA
*
8140544 TTAAAAA-AATTTTAAA
1 TTAAAAATATTTTTAAA
*
8140560 -AAAAAATATTTT
1 TTAAAAATATTTT
8140572 AAAAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 5 0.21
16 12 0.50
17 7 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAAAAATATTTTTAAA
Found at i:8140570 original size:15 final size:15
Alignment explanation
Indices: 8140529--8140576 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
8140519 AAAGTATTTT
8140529 AAAAATATTTTTAAATTA
1 AAAAATA-TTTTAAA--A
8140547 AAAAA-ATTTTAAAA
1 AAAAATATTTTAAAA
8140561 AAAAATATTTTAAAA
1 AAAAATATTTTAAAA
8140576 A
1 A
8140577 TATTTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.21
15 10 0.34
16 7 0.24
17 1 0.03
18 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAATATTTTAAAA
Found at i:8140587 original size:10 final size:11
Alignment explanation
Indices: 8140492--8140586 Score: 53
Period size: 11 Copynumber: 8.9 Consensus size: 11
8140482 GGCCCATTTT
8140492 TATTTT-AAAA
1 TATTTTAAAAA
8140502 -ATTTTAAAAA
1 TATTTTAAAAA
**
8140512 -ATTAAAAAAA
1 TATTTTAAAAA
8140522 GTATTTTAAAAA
1 -TATTTTAAAAA
*
8140534 TATTTT--TAA
1 TATTTTAAAAA
8140543 -A--TTAAAAA
1 TATTTTAAAAA
*
8140551 AATTTTAAAAAAAAA
1 TATTTT----AAAAA
8140566 TATTTTAAAAA
1 TATTTTAAAAA
8140577 TATTTTAAAA
1 TATTTTAAAA
8140587 TTAAAAAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 23
0.69 0.07 0.24
Matches are distributed among these distances:
6 2 0.03
8 3 0.05
9 8 0.12
10 12 0.18
11 23 0.35
12 8 0.12
15 10 0.15
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:8140633 original size:83 final size:82
Alignment explanation
Indices: 8140492--8140676 Score: 271
Period size: 83 Copynumber: 2.2 Consensus size: 82
8140482 GGCCCATTTT
* * *
8140492 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAATTAAAAAAATTTT
1 TATTTT-AAAA-TTAAAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAA-TTT
** *
8140557 AAAAAAAAATATTTTAAAAA
63 AAAAAAAAATAAGTAAAAAA
8140577 TATTTTAAAATTAAAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTAAA
1 TATTTTAAAATTAAAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTAAA
*
8140642 AAAAAGTAAGTAAAAAA
66 AAAAAATAAGTAAAAAA
*
8140659 TATTTTAAAGTTAAAAAA
1 TATTTTAAAATTAAAAAA
8140677 TAAATATATT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
82 36 0.39
83 46 0.50
84 4 0.04
85 6 0.07
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (82 bp):
TATTTTAAAATTAAAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTAAA
AAAAAATAAGTAAAAAA
Found at i:8140643 original size:17 final size:17
Alignment explanation
Indices: 8140610--8140643 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8140600 AAAAAGTATT
* *
8140610 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
8140627 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
8140644 AAAGTAAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:8144992 original size:20 final size:20
Alignment explanation
Indices: 8144954--8144992 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8144944 TAGACTGAAG
* **
8144954 AAAAAGAAGAAAATTAAAAA
1 AAAAAAAAGAAAAGAAAAAA
8144974 AAAAAAAAGAAAAGAAAAA
1 AAAAAAAAGAAAAGAAAAA
8144993 GAAAGAAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (20 bp):
AAAAAAAAGAAAAGAAAAAA
Found at i:8145150 original size:2 final size:2
Alignment explanation
Indices: 8145143--8145177 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8145133 CAGCGCTCCT
8145143 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8145178 GTTCACTTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8146288 original size:57 final size:57
Alignment explanation
Indices: 8146195--8146317 Score: 219
Period size: 57 Copynumber: 2.2 Consensus size: 57
8146185 TATTAGATTG
* * *
8146195 AAGGATGACCGAGTGGCCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
8146252 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
8146309 AAGGCTGAC
1 AAGGCTGAC
8146318 GAGTCTGAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 63 1.00
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (57 bp):
AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
Found at i:8147550 original size:19 final size:19
Alignment explanation
Indices: 8147511--8147551 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8147501 TTTTTAGTTA
* **
8147511 TTTTATATATTTATACTTT
1 TTTTATAAATTTATAAATT
8147530 TTTTATAAATTTATAAATT
1 TTTTATAAATTTATAAATT
8147549 TTT
1 TTT
8147552 AGTCCTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTATAAATTTATAAATT
Found at i:8150398 original size:22 final size:23
Alignment explanation
Indices: 8150365--8150423 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
8150355 AGAATGATAC
* *
8150365 ATGA-AAACTTAAAATAAT-TAT
1 ATGATAAATTTAAAACAATATAT
8150386 ATGATAAATTTAAAACAATAATAT
1 ATGATAAATTTAAAACAAT-ATAT
*
8150410 GTGATAAATTTAAA
1 ATGATAAATTTAAA
8150424 CAACATTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.12
22 12 0.38
24 16 0.50
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (23 bp):
ATGATAAATTTAAAACAATATAT
Found at i:8150419 original size:24 final size:25
Alignment explanation
Indices: 8150377--8150423 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
8150367 GAAAACTTAA
8150377 AATAATTATATGATAAATTTAAAAC
1 AATAATTATATGATAAATTTAAAAC
*
8150402 AATAA-TATGTGATAAATTTAAA
1 AATAATTATATGATAAATTTAAA
8150424 CAACATTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (25 bp):
AATAATTATATGATAAATTTAAAAC
Found at i:8154143 original size:29 final size:28
Alignment explanation
Indices: 8154111--8154172 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
8154101 AAAAAGCCCC
*
8154111 TTTTTTTAAAATTTACCGAAATGGGCCGA
1 TTTTTTGAAAATTTACCGAAATGGGCC-A
** * *
8154140 TTTTTTGATTATTTACCGGAATGGTCCA
1 TTTTTTGAAAATTTACCGAAATGGGCCA
8154168 TTTTT
1 TTTTT
8154173 CAGGAAATCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (28 bp):
TTTTTTGAAAATTTACCGAAATGGGCCA
Found at i:8154565 original size:126 final size:126
Alignment explanation
Indices: 8154334--8154688 Score: 606
Period size: 126 Copynumber: 2.8 Consensus size: 126
8154324 ATTATTTCGA
8154334 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
1 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
8154398 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
* * * *
8154460 -TCTGATGTTTCTGAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAGAAGAAATTG
1 GT-TGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
* *
8154524 TGAAATCGCACCCTCGTGGACGCGATTTTTCTACAGTAGGTCATGTAAGAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
* *
8154586 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTAATTGAGAAAAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
8154651 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
8154689 CAAGTTTGGG
Statistics
Matches: 212, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
125 1 0.00
126 209 0.99
127 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (126 bp):
GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:8157817 original size:10 final size:10
Alignment explanation
Indices: 8157802--8157826 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8157792 CAAATCTAAC
8157802 ATTATGTAAA
1 ATTATGTAAA
8157812 ATTATGTAAA
1 ATTATGTAAA
8157822 ATTAT
1 ATTAT
8157827 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:8157908 original size:56 final size:55
Alignment explanation
Indices: 8157818--8158146 Score: 459
Period size: 56 Copynumber: 5.9 Consensus size: 55
8157808 TAAAATTATG
*
8157818 TAAAATTATTAAGCCAAAAAAATTATGTTAATGGTTAGTAAAATTTATCAAATAAAC
1 TAAAATTATTAAGCC--AAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
* **
8157875 TAAAATTATTAAGTCCAAAAATTATGTTAATGGTTAGTAAAA-TTATCAAA-ATATG
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATA-AAC
* *
8157930 TAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
* **
8157985 TAAAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAA-TTATCAAA-ATATG
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATA-AAC
* *
8158040 TAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
*
8158095 TAAAATTATTAAGTCCAAAAATTGTGTTAATAGTTAGTAAAATTTATCAAAT
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAAT
8158147 TAAGTTAGGT
Statistics
Matches: 243, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
54 54 0.22
55 85 0.35
56 89 0.37
57 13 0.05
58 2 0.01
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.36
Consensus pattern (55 bp):
TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
Found at i:8157973 original size:110 final size:110
Alignment explanation
Indices: 8157809--8158145 Score: 584
Period size: 110 Copynumber: 3.0 Consensus size: 110
8157799 AACATTATGT
* * *
8157809 AAAATTATGTAAAATTATTAAGCCAAAAAAATTATGTTAATGGTTAGTAAAATTTATCAAATAAA
1 AAAA-TATGTAAAATTATTAAGCC--AAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAA
*
8157874 CTAAAATTATTAAGTCCAAAAATTATGTTAATGGTTAGTAAAATTATC
63 CTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
8157922 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
1 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
*
8157987 AAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAATTATC
66 AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
8158032 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
1 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
*
8158097 AAATTATTAAGTCCAAAAATTGTGTTAATAGTTAGTAAAATTTATC
66 AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAA-TTATC
8158143 AAA
1 AAA
8158146 TTAAGTTAGG
Statistics
Matches: 216, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
110 185 0.86
111 8 0.04
112 19 0.09
113 4 0.02
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (110 bp):
AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:8158165 original size:6 final size:6
Alignment explanation
Indices: 8158150--8158198 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
8158140 ATCAAATTAA
*
8158150 GTTA-G GTTAGG GTTAGG GTTAGG GTTTA-A GTTA-G GTTAGG GTTAGG
1 GTTAGG GTTAGG GTTAGG GTTAGG G-TTAGG GTTAGG GTTAGG GTTAGG
8158196 GTT
1 GTT
8158199 TTTCATTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
5 11 0.28
6 25 0.64
7 3 0.08
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (6 bp):
GTTAGG
Found at i:8158179 original size:29 final size:29
Alignment explanation
Indices: 8158146--8158939 Score: 782
Period size: 29 Copynumber: 26.6 Consensus size: 29
8158136 ATTTATCAAA
*
8158146 TTAAGTTAGGTTAGGGTTAGGG--TTAGGG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTA-AG
*
8158174 TTTAAGTTAGGTTAGGGTTAGGGTTTTTCA-
1 -TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8158204 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAAGTTAGGTTAGGGTTAGGG---TT--TTAAG
* *
8158238 TTAGGTTAGGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTA-GGTTAGGGTTAGGGTTTTAAG
* *
8158268 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8158297 TTAATTTAGGTTAGGGTTAGAGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAG-GGTTTTAAG
8158326 TTAAGTTAGGTTAGGGTTAAGGTTAGGGTTTTAA-
1 TTAAGTTAGGTTA--G----GGTTAGGGTTTTAAG
*
8158360 TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8158389 TTATGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* *
8158418 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8158447 TTAATTTAGGTTAGCGTTAGGGTTAAGGTTTTTAA-
1 TT-A---A-GTTAG-GTTAGGGTT-AGGGTTTTAAG
*
8158482 TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8158511 TTAGGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* * *
8158540 TTAATTTAGGTTAGGGCTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8158569 TTAATTTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAAGTTAGGTTAGGGTTAGGG---TT--TTAAG
*
8158603 TTAGGTTAGGGTTAGGGTTAGGGTTTGTAA-
1 TTAAGTTA-GGTTAGGGTTAGGGTTT-TAAG
*
8158633 TTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGG-T----TTTAAG
* * *
8158667 TTAATTTAGGTTAGGGTTATGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
8158696 TTAA-TT---TT--GGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8158719 TTAAGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* *
8158748 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8158777 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8158806 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8158835 TTAATTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
*
8158864 TTAATTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8158893 TTAAGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8158922 TTAAGTTAGGTTAGGGTT
1 TTAAGTTAGGTTAGGGTT
8158940 TTCAATTAAA
Statistics
Matches: 672, Mismatches: 42, Indels: 102
0.82 0.05 0.12
Matches are distributed among these distances:
23 11 0.02
24 7 0.01
25 2 0.00
27 2 0.00
28 38 0.06
29 425 0.63
30 46 0.07
31 8 0.01
32 9 0.01
33 7 0.01
34 64 0.10
35 45 0.07
36 8 0.01
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (29 bp):
TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
Found at i:8158216 original size:58 final size:58
Alignment explanation
Indices: 8158146--8158939 Score: 906
Period size: 58 Copynumber: 13.3 Consensus size: 58
8158136 ATTTATCAAA
*** *
8158146 TTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTCA-
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTT-AG
*
8158204 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATT-A---A-GTTA-GGTTAGGGTTAGGGTTTTTAG
* * * *
8158268 TTAATTTAGGTTAGGGTTAGGGTTTTT-AGTTAATTTAGGTTAGGGTTAGAGTTTTTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGA-TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* *
8158326 TTAAGTTAGGTTAGGGTTAAGGTTAGGGTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTT-A-G---GGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* * *
8158389 TTATGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* *
8158447 TTAATTTAGGTTAGCGTTAGGGTTAAGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TT-A---A-GTTAG-GTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* * * *
8158511 TTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGCTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* * *
8158569 TTAATTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTGTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGG-T----TTT-TAG
* * *
8158633 TTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTAGTTAATTTAGGTTAGGGTTATGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTT----TTTGA-TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* *
8158696 TTAA-TT---TT--GGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* *
8158748 TTAATTTAGGTTAGGGTTAGGGTTTTT-AGTTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGA-TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* * *
8158806 TTAATTTAGGTTAGGGTTAGGGTTTTT-AGTTAATTTAGGTTAGGGTTAGGGTTTTTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGA-TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
* * *
8158864 TTAATTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
8158922 TTAAGTTAGGTTAGGGTT
1 TTAAGTTAGGTTAGGGTT
8158940 TTCAATTAAA
Statistics
Matches: 654, Mismatches: 43, Indels: 78
0.84 0.06 0.10
Matches are distributed among these distances:
52 30 0.05
53 6 0.01
56 2 0.00
57 11 0.02
58 362 0.55
59 15 0.02
60 2 0.00
61 1 0.00
62 4 0.01
63 71 0.11
64 125 0.19
68 5 0.01
69 20 0.03
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (58 bp):
TTAAGTTAGGTTAGGGTTAGGGTTTTTGATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
Found at i:8158241 original size:87 final size:87
Alignment explanation
Indices: 8158144--8158939 Score: 881
Period size: 87 Copynumber: 8.9 Consensus size: 87
8158134 AAATTTATCA
8158144 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTCA-TTAA
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTT-AGTTAA
*
8158208 GTTAGGTTAGGGTTAGGGTTTTT
65 TTTAGGTTAGGGTTAGGGTTTTT
*
8158231 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGGGTTTTTA
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGG----T--TTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8158296 GTTAATTTAGGTTAGGGTTAGAGTTTTT
60 GTTAATTTAGGTTAGGGTTAGGGTTTTT
*
8158324 AATTAAGTTAGGTTAGGGTTAAGGTTAGGGTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGG---T--TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
8158389 TT-ATGTTAGGTTAGGGTTAGGGTTTTT
61 TTAAT-TTAGGTTAGGGTTAGGGTTTTT
* ** * *
8158416 AATTAATTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGCGTTAGGGTTAAGGTTTTTA
1 AATTAAGTTAGGTTAGGGTTAGGG---TTAG--GGTTTAAGTTAG-GTTAGGGTTAGGGTTTTTA
* *
8158481 ATTAAGTTAGGTTAGGGTTAGGGTTTTT
60 GTTAATTTAGGTTAGGGTTAGGGTTTTT
* * ***** * *
8158509 AGTTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGCTAGGGTTTTTAGTTAAT
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
8158574 TTAGGTTAGGGTTAGGGTTTTT
66 TTAGGTTAGGGTTAGGGTTTTT
8158596 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTGTAATTAAGTTAGGTTAGGGTTAGGGTTAGGG
1 AATTAAGTTAGGTTAGGGTTAGGGTTA-GG---GT--TTAAGTTAGGTTAGGGTTAGGG-T----
*
8158661 TTTTAGTTAATTTAGGTTAGGGTTATGGTTTTT
55 TTTTAGTTAATTTAGGTTAGGGTTAGGGTTTTT
* * * * * *
8158694 AGTTAATTTTGGTTAGGGTT---TTTA---ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAT
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
8158753 TTAGGTTAGGGTTAGGGTTTTT
66 TTAGGTTAGGGTTAGGGTTTTT
* * *** *
8158775 AGTTAATTTAGGTTAGGGTTAGGGTTTTTAG-TTAATTTAGGTTAGGGTTAGGGTTTTTAGTTAA
1 AATTAAGTTAGGTTAGGGTTAGGG-TTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAA
8158839 TTTAGGTTAGGGTTAGGGTTTTT
65 TTTAGGTTAGGGTTAGGGTTTTT
* ***** * *
8158862 AATTAATTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
8158927 TTAGGTTAGGGTT
66 TTAGGTTAGGGTT
8158940 TTCAATTAAA
Statistics
Matches: 619, Mismatches: 56, Indels: 68
0.83 0.08 0.09
Matches are distributed among these distances:
81 50 0.08
85 3 0.00
86 26 0.04
87 218 0.35
88 8 0.01
90 2 0.00
91 3 0.00
92 87 0.14
93 163 0.26
94 3 0.00
95 7 0.01
98 49 0.08
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (87 bp):
AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
TTAGGTTAGGGTTAGGGTTTTT
Found at i:8158617 original size:6 final size:6
Alignment explanation
Indices: 8158602--8158662 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
8158592 TTTTAATTAA
* * * *
8158602 GTTA-G GTTAGG GTTAGG GTTAGG GTTTGTA ATTA-A GTTA-G GTTAGG
1 GTTAGG GTTAGG GTTAGG GTTAGG GTTAG-G GTTAGG GTTAGG GTTAGG
8158648 GTTAGG GTTAGG GTT
1 GTTAGG GTTAGG GTT
8158663 TTAGTTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
5 12 0.26
6 33 0.70
7 2 0.04
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (6 bp):
GTTAGG
Found at i:8158640 original size:18 final size:18
Alignment explanation
Indices: 8158584--8158642 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
8158574 TTAGGTTAGG
*
8158584 GTTAGGGTTTTTAATTAA
1 GTTAGGGTTTGTAATTAA
* ** *
8158602 GTTA-GGTTAG-GGTTAGG
1 GTTAGGGTTTGTAATTA-A
8158619 GTTAGGGTTTGTAATTAA
1 GTTAGGGTTTGTAATTAA
8158637 GTTAGG
1 GTTAGG
8158643 TTAGGGTTAG
Statistics
Matches: 29, Mismatches: 9, Indels: 6
0.66 0.20 0.14
Matches are distributed among these distances:
16 3 0.10
17 8 0.28
18 15 0.52
19 3 0.10
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.42
Consensus pattern (18 bp):
GTTAGGGTTTGTAATTAA
Found at i:8158946 original size:23 final size:23
Alignment explanation
Indices: 8158902--8158954 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
8158892 ATTAAGTTAG
*
8158902 GTTAGGGTTAGGGTTTTTAATTAA
1 GTTA-GGTTAGGGTTTTCAATTAA
8158926 GTTAGGTTAGGGTTTTCAATTAA
1 GTTAGGTTAGGGTTTTCAATTAA
*
8158949 ATTAGG
1 GTTAGG
8158955 GTTTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.43
Consensus pattern (23 bp):
GTTAGGTTAGGGTTTTCAATTAA
Found at i:8159033 original size:26 final size:25
Alignment explanation
Indices: 8159003--8159051 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8158993 CTTCAAAAAT
8159003 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
8159029 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
8159052 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:8160148 original size:7 final size:7
Alignment explanation
Indices: 8160138--8160162 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8160128 TTATATACAT
8160138 AATACTA
1 AATACTA
8160145 AATACTA
1 AATACTA
8160152 AATACTA
1 AATACTA
8160159 AATA
1 AATA
8160163 TCAATCAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Done.