Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 3 of 196
Found at i:672101 original size:15 final size:13
Alignment explanation
Indices: 672073--672099 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
672063 AATGAGATTG
672073 ATATAAGCAAAAA
1 ATATAAGCAAAAA
672086 ATATAAGCAAAAA
1 ATATAAGCAAAAA
672099 A
1 A
672100 AACCCACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.15
Consensus pattern (13 bp):
ATATAAGCAAAAA
Found at i:674681 original size:50 final size:47
Alignment explanation
Indices: 674589--674688 Score: 105
Period size: 50 Copynumber: 2.0 Consensus size: 47
674579 GAAATATAAG
674589 GATTAAAACTAAAATTTAACCATTATTATATAATCTCAAAAAAGTAAAAA
1 GATTAAAACTAAAATTTAACCA-TATTATATAATCTCAAAAAA--AAAAA
* * *
674639 GATTAGAACTAAAATTT-AGCA-ATTATATATTCTCATGTAAAAAAAAAA
1 GATTAAAACTAAAATTTAACCATATTATATAATCTCA---AAAAAAAAAA
674687 GA
1 GA
674689 GAAAAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
47 13 0.30
48 7 0.16
49 3 0.07
50 21 0.48
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (47 bp):
GATTAAAACTAAAATTTAACCATATTATATAATCTCAAAAAAAAAAA
Found at i:681605 original size:15 final size:14
Alignment explanation
Indices: 681575--681618 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
681565 TGTATATTTA
*
681575 ATAATATTTAAAATT
1 ATAATATTTTAAA-T
*
681590 ATAATATTTTATAT
1 ATAATATTTTAAAT
681604 -TAATATTTTAAAT
1 ATAATATTTTAAAT
681617 AT
1 AT
681619 TTTTAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 12 0.48
14 2 0.08
15 11 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAATATTTTAAAT
Found at i:684942 original size:27 final size:27
Alignment explanation
Indices: 684904--684956 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
684894 TAGCCACAAA
*
684904 GGTGCCGCCTTTTTATTCCTCTCCATT
1 GGTGCCGCCTTTTTATTCCCCTCCATT
684931 GGTGCCGCCTTTTTATTCCCCTCCAT
1 GGTGCCGCCTTTTTATTCCCCTCCAT
684957 CACCCTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.08, C:0.36, G:0.15, T:0.42
Consensus pattern (27 bp):
GGTGCCGCCTTTTTATTCCCCTCCATT
Found at i:685748 original size:41 final size:41
Alignment explanation
Indices: 685703--685806 Score: 147
Period size: 41 Copynumber: 2.5 Consensus size: 41
685693 CTTCCCTCTT
* *
685703 CTTCTTCTTCTTTTTTTTCTCTTCCCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTTTTTTCTCTTCCCCTTTCCTCTTCTTTC
*
685744 CTTCTTTTTCTTTCTTTTT-TCTTCTCCTTTCCTCTTCTTTC
1 CTTCTTTTTCTTT-TTTTTCTCTTCCCCTTTCCTCTTCTTTC
* *
685785 CTTCTTTTTCTTTCTTTCCTCT
1 CTTCTTTTTCTTTTTTTTCTCT
685807 CCTTCATTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 3 0.05
41 48 0.86
42 5 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (41 bp):
CTTCTTTTTCTTTTTTTTCTCTTCCCCTTTCCTCTTCTTTC
Found at i:685757 original size:4 final size:4
Alignment explanation
Indices: 685736--685832 Score: 69
Period size: 4 Copynumber: 24.0 Consensus size: 4
685726 CCCCTTTCCT
*
685736 TTTC TTTC CTTC -TT- TTTC TTTC TTT- TTTC TTCTCC TTTCC TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C T-TTC
* * *
685781 TTTC CTTC -TT- TTTC TTTC TTTCC TCTC CTTC ATTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC -TTTC TTTC TTTC TTTC
685829 TTTC
1 TTTC
685833 CCTCTCCTTC
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
3 11 0.14
4 48 0.62
5 13 0.17
6 5 0.06
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:685817 original size:77 final size:76
Alignment explanation
Indices: 685682--685827 Score: 181
Period size: 77 Copynumber: 1.9 Consensus size: 76
685672 TTACCTTTTT
* * *
685682 TTTTTTCCTTCCTTCCCTCTTCTTCTTCTTCTTTTTTTTCTCTTCCCCTTTCCTTTTCTTTCCTT
1 TTTTTTCCTTCCTTCCCTCTTCTTCTCCTTCTTTTTTTTCTCTTCCCCCTTCCATTTCTTTCCTT
685747 CTTTTTCTTTC
66 CTTTTTCTTTC
* *
685758 TTTTTTCTTCTCCTTTCCTCTTCTT-TCCTTCTTTTTCTTTCT-TTCCTCTCCTT-CATTTCTTT
1 TTTTTTCCT-TCCTTCCCTCTTCTTCTCCTTCTTTTT-TTTCTCTTCC-C-CCTTCCATTTCTTT
*
685820 CTTTCTTT
62 CCTTCTTT
685828 CTTTCCCTCT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
76 22 0.37
77 35 0.58
78 3 0.05
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (76 bp):
TTTTTTCCTTCCTTCCCTCTTCTTCTCCTTCTTTTTTTTCTCTTCCCCCTTCCATTTCTTTCCTT
CTTTTTCTTTC
Found at i:686023 original size:20 final size:21
Alignment explanation
Indices: 686003--686043 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
685993 TTTAGGTATA
686003 TTTTGGTAAATAAAAAAATATT
1 TTTTGGTAAATAAAAAAATA-T
686025 TTTTGGTAAATAAAAAAAT
1 TTTTGGTAAATAAAAAAAT
686044 TATAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTTGGTAAATAAAAAAATAT
Found at i:690916 original size:21 final size:22
Alignment explanation
Indices: 690887--690927 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
690877 CCTATACACT
*
690887 CTCTCTCCTCTAATTTCCTCGG
1 CTCTCTCCTCTAATCTCCTCGG
*
690909 CTCT-TCCTCTCATCTCCTC
1 CTCTCTCCTCTAATCTCCTC
690928 TCTTGCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.07, C:0.46, G:0.05, T:0.41
Consensus pattern (22 bp):
CTCTCTCCTCTAATCTCCTCGG
Found at i:707504 original size:10 final size:10
Alignment explanation
Indices: 707491--707518 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
707481 AATTAAATAT
707491 AATTTAAAAA
1 AATTTAAAAA
707501 AATTTAAAAA
1 AATTTAAAAA
707511 AATTTAAA
1 AATTTAAA
707519 GTTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:713225 original size:52 final size:48
Alignment explanation
Indices: 713206--713408 Score: 256
Period size: 46 Copynumber: 4.3 Consensus size: 48
713196 TGACAAGTGG
* *
713206 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
713252 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* * *
713304 AAAGTGATAAGTGATCGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
713350 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
713396 AAAGTGATAAGTG
1 AAAGTGATAAGTG
713409 GCTACACTTA
Statistics
Matches: 142, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
46 99 0.70
52 43 0.30
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:713260 original size:98 final size:98
Alignment explanation
Indices: 713140--713408 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
713130 TTTGAGTACT
*
713140 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
713205 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
713238 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
713303 AAAAGTGATAAGTGATCGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
713336 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
713401 GATAAGTG
65 GAAAAGTG
713409 GCTACACTTA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:713416 original size:37 final size:37
Alignment explanation
Indices: 713372--713517 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
713362 GATAGCTTTA
*
713372 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
713409 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
713446 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
713483 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
713518 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:715172 original size:19 final size:19
Alignment explanation
Indices: 715134--715172 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
715124 CCAGCCCAGT
* * *
715134 ATTTTAAAAATATTTTAAA
1 ATTTAAAAAATATATAAAA
715153 ATTTAAAAAATATATAAAA
1 ATTTAAAAAATATATAAAA
715172 A
1 A
715173 ATATTTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTAAAAAATATATAAAA
Found at i:719801 original size:32 final size:31
Alignment explanation
Indices: 719753--719846 Score: 84
Period size: 32 Copynumber: 3.0 Consensus size: 31
719743 ATCTCAATAG
*
719753 TATTTTATT-AATTTAATATTAAAGTGATTA
1 TATTATATTAAATTTAATATTAAAGTGATTA
* * * * *
719783 TCTTAATATTAAATTTAAT-CTAATATTTATCAA
1 TATT-ATATTAAATTTAATATTAA-AGTGAT-TA
*
719816 TATTAGATTAAATTTAATATTAAAGTGATTA
1 TATTATATTAAATTTAATATTAAAGTGATTA
719847 AGTTTAATAA
Statistics
Matches: 47, Mismatches: 12, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
30 3 0.06
31 8 0.17
32 29 0.62
33 7 0.15
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (31 bp):
TATTATATTAAATTTAATATTAAAGTGATTA
Found at i:719858 original size:68 final size:67
Alignment explanation
Indices: 719717--719846 Score: 185
Period size: 68 Copynumber: 2.0 Consensus size: 67
719707 TTTAATAAAT
* * **
719717 TTAATATTAAATTTAATTTAATACTTATCTCAATAGTATTTTATTAATTTAATATTAAAGTGATT
1 TTAATATTAAATTTAATCTAATACTTATATCAATAGTAGATTA-TAATTTAATATTAAAGTGATT
719782 ATC
65 ATC
*
719785 TTAATATTAAATTTAATCTAATA-TT-TATCAATATTAGATTA-AATTTAATATTAAAGTGATTA
1 TTAATATTAAATTTAATCTAATACTTATATCAATAGTAGATTATAATTTAATATTAAAGTGATTA
719847 AGTTTAATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 21 0.37
66 12 0.21
67 2 0.04
68 22 0.39
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (67 bp):
TTAATATTAAATTTAATCTAATACTTATATCAATAGTAGATTATAATTTAATATTAAAGTGATTA
TC
Found at i:722149 original size:29 final size:30
Alignment explanation
Indices: 722075--722153 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
722065 CAAAATTCAA
*
722075 AAAAGTATAGGGACTAAAATTGAGCAATATG
1 AAAA-TATAGGGACTAAATTTGAGCAATATG
* *
722106 AAAA-ATAAGGAGACTAAATTTGATCAA-ATT
1 AAAATAT-AGG-GACTAAATTTGAGCAATATG
722136 AAAATATAGGGACTAAAT
1 AAAATATAGGGACTAAAT
722154 CTGCAACTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
29 10 0.24
30 12 0.29
31 20 0.48
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (30 bp):
AAAATATAGGGACTAAATTTGAGCAATATG
Found at i:729881 original size:25 final size:25
Alignment explanation
Indices: 729835--729883 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
729825 TATATATTAA
* * *
729835 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTATATATATTTAATC
729860 AAATATATATTATATATATTTAAT
1 AAATATATATTATATATATTTAAT
729884 ATATATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
AAATATATATTATATATATTTAATC
Found at i:730213 original size:26 final size:24
Alignment explanation
Indices: 730184--730232 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
730174 AAATTAATAT
730184 TAATAAATATAAAATTAATTAAGTGA
1 TAATAAATATAAAA-TAA-TAAGTGA
* *
730210 TAATCAATTTAAAATAATAAGTG
1 TAATAAATATAAAATAATAAGTG
730233 GAGTTTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (24 bp):
TAATAAATATAAAATAATAAGTGA
Found at i:731722 original size:26 final size:25
Alignment explanation
Indices: 731688--731741 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 25
731678 TTTAAAATAC
731688 TTTTAAAATAATTTTTTATTTTTTAT
1 TTTTAAAATAATTTTTTA-TTTTTAT
731714 TTTTAAAATAATTTTTTATTTTTAT
1 TTTTAAAATAATTTTTTATTTTTAT
731739 TTT
1 TTT
731742 ACAAAATGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTTAAAATAATTTTTTATTTTTAT
Found at i:731747 original size:26 final size:26
Alignment explanation
Indices: 731688--731748 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
731678 TTTAAAATAC
731688 TTTT-AAAATAATTTTTTATTTTTTA
1 TTTTCAAAATAATTTTTTATTTTTTA
*
731713 TTTTTAAAATAATTTTTTA-TTTTTA
1 TTTTCAAAATAATTTTTTATTTTTTA
731738 TTTTACAAAAT
1 TTTT-CAAAAT
731749 GGGCCGGGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 14 0.42
26 19 0.58
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTTCAAAATAATTTTTTATTTTTTA
Found at i:731973 original size:26 final size:27
Alignment explanation
Indices: 731934--731989 Score: 105
Period size: 26 Copynumber: 2.1 Consensus size: 27
731924 TTTAAAATAC
731934 TTTTAAAATAAATTTTTTATTTTTTAT
1 TTTTAAAATAAATTTTTTATTTTTTAT
731961 TTTTAAAAT-AATTTTTTATTTTTTAT
1 TTTTAAAATAAATTTTTTATTTTTTAT
731987 TTT
1 TTT
731990 ACAAAATGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTAAAATAAATTTTTTATTTTTTAT
Found at i:731990 original size:38 final size:39
Alignment explanation
Indices: 731899--731990 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 39
731889 TAATAAATAC
*
731899 ATATTTTTTATTTTTATTTTTTAATTTTAAAATACTTTTA
1 ATATTTTTTA-TTTTATTTTTTAATTTTAAAATAATTTTA
* *** *
731939 AAATAAATT-TTTTATTTTTTATTTTTAAAATAATTTT-
1 ATATTTTTTATTTTATTTTTTAATTTTAAAATAATTTTA
*
731976 TTATTTTTTATTTTA
1 ATATTTTTTATTTTA
731991 CAAAATGGGT
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
37 4 0.10
38 31 0.77
40 5 0.12
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (39 bp):
ATATTTTTTATTTTATTTTTTAATTTTAAAATAATTTTA
Found at i:731995 original size:27 final size:27
Alignment explanation
Indices: 731934--731996 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
731924 TTTAAAATAC
731934 TTTT-AAAATAAATTTTTTATTTTTTA
1 TTTTCAAAATAAATTTTTTATTTTTTA
*
731960 TTTTTAAAAT-AATTTTTTATTTTTTA
1 TTTTCAAAATAAATTTTTTATTTTTTA
731986 TTTTACAAAAT
1 TTTT-CAAAAT
731997 GGGTCGGGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 24 0.71
27 10 0.29
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTTCAAAATAAATTTTTTATTTTTTA
Found at i:732053 original size:248 final size:248
Alignment explanation
Indices: 731609--732370 Score: 1284
Period size: 238 Copynumber: 3.1 Consensus size: 248
731599 CCTCGGGCAT
* * * *
731609 AACTTTTT-T-GGCCCGGCCCG-GCCTGGCCCGAATATAATAAATATATATTTTTTATTTTTATT
1 AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTATT
*
731671 TTTAAATTTTAAAATACTTTTAAAAT-AATTTTTTATTTTTTATTTTTAAAATAATTTTTTA-TT
66 TTTTAATTTTAAAATACTTTTAAAATAAATTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
*
731734 TTTATTTTACAAAATGGGCCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
131 TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
731799 CTGGGCAAAATTTCAGGCCCATATTTCGGGCCGGGCTTAGGAAGCGGGCCGAA
196 CTGGGCAAAATTTCAGGCCCATATTTCGGGCCGGGCTTAGGAAGCGGGCCGAA
731852 AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTATT
1 AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTATT
731917 TTTTAATTTTAAAATACTTTTAAAATAAATTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
66 TTTTAATTTTAAAATACTTTTAAAATAAATTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
731982 TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
131 TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
* * *
732047 CTGGGCAAAATTTCAGGCCCATATTTCGGCCCGGACTTAGGAAGCGGGCCAAA
196 CTGGGCAAAATTTCAGGCCCATATTTCGGGCCGGGCTTAGGAAGCGGGCCGAA
*
732100 AATTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTA--
1 AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTATT
*
732163 -TTT--TTTT---A-A-TTTTAAAATAATTTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
66 TTTTAATTTTAAAATACTTTTAAAATAAATTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
732220 TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
131 TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
*
732285 CTGGGCAAAATTTCAGGCCCATATTTCGGGTCGGGCTTAGGAAGCGGGCCGAA
196 CTGGGCAAAATTTCAGGCCCATATTTCGGGCCGGGCTTAGGAAGCGGGCCGAA
* * *
732338 AATTTTTTCCAAGCCCGGCTCGAACCCGGCCCG
1 AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCG
732371 GCCCATGGAC
Statistics
Matches: 497, Mismatches: 17, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
238 192 0.39
239 1 0.00
240 1 0.00
243 12 0.02
244 1 0.00
245 13 0.03
246 64 0.13
247 35 0.07
248 178 0.36
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (248 bp):
AACTTTTTCTAGGCCCGGCTCGAACCCGGCCCGAATATAATAAATACATATTTTTTATTTTTATT
TTTTAATTTTAAAATACTTTTAAAATAAATTTTTTATTTTTTATTTTTAAAATAATTTTTTATTT
TTTATTTTACAAAATGGGTCGGGCTGGGCCGGGCTCGGGCTTATGATATTTTTCCCGGGCCAAGC
CTGGGCAAAATTTCAGGCCCATATTTCGGGCCGGGCTTAGGAAGCGGGCCGAA
Found at i:732234 original size:27 final size:26
Alignment explanation
Indices: 732157--732228 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 26
732147 ATATTTTTTA
732157 TTTTTATTTTTTTAATTTTAAAATAATT
1 TTTTTA-TTTTTT-ATTTTAAAATAATT
732185 TTTTTATTTTTTATTTTTAAAATAA-T
1 TTTTTATTTTTTA-TTTTAAAATAATT
732211 TTTTTATTTTTTATTTTA
1 TTTTTATTTTTTATTTTA
732229 CAAAATGGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
25 5 0.12
26 15 0.35
27 17 0.40
28 6 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTTTATTTTTTATTTTAAAATAATT
Found at i:733289 original size:32 final size:31
Alignment explanation
Indices: 733244--733305 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
733234 TTTTCCAGAG
733244 TTTTTATATTTTTT-TGAATTTTGAATATTATT
1 TTTTTATATTTTTTAT-AATTTTGAA-ATTATT
*
733276 TTTTTA-ATATTTTTATAATTTTTAAATTAT
1 TTTTTATAT-TTTTTATAATTTTGAAATTAT
733306 CTATTGACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
31 7 0.26
32 19 0.70
33 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (31 bp):
TTTTTATATTTTTTATAATTTTGAAATTATT
Found at i:738098 original size:89 final size:89
Alignment explanation
Indices: 737947--738111 Score: 231
Period size: 89 Copynumber: 1.9 Consensus size: 89
737937 TCAGGGGAGG
* * * * * *
737947 AAATCTGATTTGTCGTTCTCTTATTGGAAATGGATATAGATGACACGGAATTAAAGTTTCATACA
1 AAATCTCATTTGTCATTCTCCTATTGAAAATGGATAGAGATGACACGGAATCAAAGTTTCATACA
738012 ATCCTTTCTCAACATCAAGAGAAA
66 ATCCTTTCTCAACATCAAGAGAAA
* ** *
738036 AAATCTCATTTGTCATTCTCCTATTGAAAATGGATAGGGATGACGTGGAATCACAGTTTCATACA
1 AAATCTCATTTGTCATTCTCCTATTGAAAATGGATAGAGATGACACGGAATCAAAGTTTCATACA
*
738101 ATTCTTTCTCA
66 ATCCTTTCTCA
738112 TTAATTAATT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 65 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (89 bp):
AAATCTCATTTGTCATTCTCCTATTGAAAATGGATAGAGATGACACGGAATCAAAGTTTCATACA
ATCCTTTCTCAACATCAAGAGAAA
Found at i:750520 original size:4 final size:4
Alignment explanation
Indices: 750511--750553 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
750501 GGTATTAAAC
750511 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
750554 AAGAAAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:755040 original size:12 final size:12
Alignment explanation
Indices: 755018--755049 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
755008 ATTATGCATA
755018 TTAAA-AAATAT
1 TTAAATAAATAT
755029 TTAAATAAATAT
1 TTAAATAAATAT
755041 TTAAATAAA
1 TTAAATAAA
755050 ATAATCGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TTAAATAAATAT
Found at i:755109 original size:26 final size:28
Alignment explanation
Indices: 755075--755128 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 28
755065 AATAAAGATA
*
755075 ATAAATTCTACAT-ATTA-AAAAATTAT
1 ATAAATTCTACATAATAATAAAAATTAT
755101 ATAAATTCTACATAATAATAAAAATTAT
1 ATAAATTCTACATAATAATAAAAATTAT
755129 GACATTGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 13 0.52
27 3 0.12
28 9 0.36
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (28 bp):
ATAAATTCTACATAATAATAAAAATTAT
Found at i:764102 original size:32 final size:32
Alignment explanation
Indices: 764028--764114 Score: 83
Period size: 32 Copynumber: 2.8 Consensus size: 32
764018 TTATTTTAGG
*
764028 AGATAAAAT-TAAATT-A-TATTTTTTATGAA
1 AGATAAAATATAATTTCATTATTTTTTATGAA
*
764057 AGCTAAAATATAATTTCATTATTTTTTAT-AA
1 AGATAAAATATAATTTCATTATTTTTTATGAA
* * * *
764088 GGATTAAATCATAATTTTATCATTTTT
1 AGATAAAAT-ATAATTTCATTATTTTT
764115 GAAGGATTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 8 0.17
30 5 0.11
31 9 0.19
32 25 0.53
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (32 bp):
AGATAAAATATAATTTCATTATTTTTTATGAA
Found at i:766379 original size:51 final size:51
Alignment explanation
Indices: 766321--766438 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
766311 TGTGTAAATG
* * *
766321 TTAACAAAATGTGTAAATTTTGTAGGTTAAATTTATTAAATTGAGACCAAA
1 TTAACAAAATGTGTAAATATTGTAGGTTAAATTTATTAAAATAAGACCAAA
* * * *
766372 TTGACAAAATGTGTAAATATTGTGGGTTAAATTTGTTAAAATAAGATCAAA
1 TTAACAAAATGTGTAAATATTGTAGGTTAAATTTATTAAAATAAGACCAAA
*
766423 TTAACAAAATATGTAA
1 TTAACAAAATGTGTAA
766439 GCTTTAAGGG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (51 bp):
TTAACAAAATGTGTAAATATTGTAGGTTAAATTTATTAAAATAAGACCAAA
Found at i:769578 original size:45 final size:45
Alignment explanation
Indices: 769494--769582 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
769484 TTGATCCTTA
*
769494 TTCTCCAAAAGAACATCTTTTTCACCCTTCTCTCCCACAGTTTCT
1 TTCTCCAAAAGAACATCTTTTTCACCCTTATCTCCCACAGTTTCT
* ** **
769539 TTCTCCAAAAGATCA-CTTTTTTCTGCCTTATCTTTCACAGTTTC
1 TTCTCCAAAAGAACATC-TTTTTCACCCTTATCTCCCACAGTTTC
769583 ATCTTTTTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 1 0.03
45 36 0.97
ACGTcount: A:0.21, C:0.31, G:0.06, T:0.42
Consensus pattern (45 bp):
TTCTCCAAAAGAACATCTTTTTCACCCTTATCTCCCACAGTTTCT
Found at i:791099 original size:12 final size:12
Alignment explanation
Indices: 791082--791108 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
791072 AAACAGTTAA
791082 ACCAACGCTAAC
1 ACCAACGCTAAC
791094 ACCAACGCTAAC
1 ACCAACGCTAAC
791106 ACC
1 ACC
791109 CAAAATCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.44, G:0.07, T:0.07
Consensus pattern (12 bp):
ACCAACGCTAAC
Found at i:797802 original size:12 final size:12
Alignment explanation
Indices: 797785--797811 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
797775 AAACAGTTAA
797785 ACCAACGCTAAC
1 ACCAACGCTAAC
797797 ACCAACGCTAAC
1 ACCAACGCTAAC
797809 ACC
1 ACC
797812 CAAAATCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.44, G:0.07, T:0.07
Consensus pattern (12 bp):
ACCAACGCTAAC
Found at i:803188 original size:10 final size:11
Alignment explanation
Indices: 803162--803187 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
803152 TTAAAAATAA
803162 AAAAATATTTT
1 AAAAATATTTT
803173 AAAAATATTTT
1 AAAAATATTTT
803184 AAAA
1 AAAA
803188 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:803207 original size:30 final size:31
Alignment explanation
Indices: 803148--803213 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
803138 ACCAAAAATT
****
803148 TATTTTAAAAATAAAAAAAT-ATTTTAAAAA
1 TATTTTAAAAATAAAAAAATAAAAAAAAAAA
*
803178 TATTTTAAAATTAAAAAAATAAAAAAAAAAA
1 TATTTTAAAAATAAAAAAATAAAAAAAAAAA
803209 TATTT
1 TATTT
803214 ATTATATTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (31 bp):
TATTTTAAAAATAAAAAAATAAAAAAAAAAA
Found at i:808171 original size:29 final size:31
Alignment explanation
Indices: 808133--808200 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
808123 TCACAAATTT
* *
808133 AGAATCTAGTATTTT-TA-TTTTTA-TTTTTA
1 AGAATTTAGT-TTTTCTATTTTTTAGATTTTA
808162 AGAATTTAGTTTTTCTATTTTTTAGATTTTA
1 AGAATTTAGTTTTTCTATTTTTTAGATTTTA
808193 A-AATTTAG
1 AGAATTTAG
808201 ATTCAATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 11 0.32
30 13 0.38
31 6 0.18
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59
Consensus pattern (31 bp):
AGAATTTAGTTTTTCTATTTTTTAGATTTTA
Found at i:808192 original size:23 final size:22
Alignment explanation
Indices: 808150--808192 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
808140 AGTATTTTTA
808150 TTTTTATTTTTAAGAATTTAGT
1 TTTTTATTTTTAAGAATTTAGT
* *
808172 TTTTCTATTTTTTAGATTTTA
1 TTTT-TATTTTTAAGAATTTA
808193 AAATTTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTTTATTTTTAAGAATTTAGT
Found at i:818115 original size:11 final size:11
Alignment explanation
Indices: 818085--818119 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
818075 TCATGTTATC
*
818085 AATTTAACCCT
1 AATTAAACCCT
818096 AATTAAAACCCT
1 AATT-AAACCCT
818108 AATTAAACCCT
1 AATTAAACCCT
818119 A
1 A
818120 TTTTGATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.29
Consensus pattern (11 bp):
AATTAAACCCT
Found at i:819913 original size:4 final size:4
Alignment explanation
Indices: 819904--819929 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
819894 AAAAGTTATT
819904 TTTG TTTG TTTG TTTG TTTG TTTG TT
1 TTTG TTTG TTTG TTTG TTTG TTTG TT
819930 GTGAGGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:821111 original size:32 final size:32
Alignment explanation
Indices: 821070--821134 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
821060 TCAAACCTTA
821070 TATCTTTGATATCCTTTAAAGCATTGATTATT
1 TATCTTTGATATCCTTTAAAGCATTGATTATT
821102 TATCTTTGATATCCTTTAAAGCATTGATTATT
1 TATCTTTGATATCCTTTAAAGCATTGATTATT
821134 T
1 T
821135 CATGCTGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (32 bp):
TATCTTTGATATCCTTTAAAGCATTGATTATT
Found at i:828844 original size:19 final size:19
Alignment explanation
Indices: 828809--828849 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
828799 CTATTCCACC
828809 TTAAAAATAATTAAATTATT
1 TTAAAAATAATTAAATT-TT
*
828829 TTAAAAAT-ATTGAATTTT
1 TTAAAAATAATTAAATTTT
828847 TTA
1 TTA
828850 TATTTAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 7 0.35
20 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAAAAATAATTAAATTTT
Found at i:830707 original size:69 final size:69
Alignment explanation
Indices: 830627--830761 Score: 191
Period size: 69 Copynumber: 2.0 Consensus size: 69
830617 CTCTGGTTAA
*
830627 AACAGCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGACT-GATGCATCAAAAAC
1 AACAGCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGA-TGGATACATCAAAAAC
830691 TAAAC
65 TAAAC
* ** * * *
830696 AACATCAGAGTTGTTTTCACAGTAGCATTTGACTTATCTATCTATAGATGGATACATCAAAAACT
1 AACAGCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGATGGATACATCAAAAACT
830761 A
66 A
830762 TTACTTTTGC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 1 0.02
69 57 0.98
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (69 bp):
AACAGCAGAGTTGTTCACACACTAACATTTGACTTATCTATCGATAGATGGATACATCAAAAACT
AAAC
Found at i:834751 original size:21 final size:21
Alignment explanation
Indices: 834726--834765 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
834716 GTATGTATCA
*
834726 TTTTA-ATATTTATATTAATAT
1 TTTTATATATGTA-ATTAATAT
834747 TTTTATATATGTAATTAAT
1 TTTTATATATGTAATTAAT
834766 TAATGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TTTTATATATGTAATTAATAT
Found at i:836806 original size:12 final size:12
Alignment explanation
Indices: 836789--836813 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
836779 AATTTTAAAA
836789 TTTTTATAACTT
1 TTTTTATAACTT
836801 TTTTTATAACTT
1 TTTTTATAACTT
836813 T
1 T
836814 ATTATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTATAACTT
Found at i:836820 original size:29 final size:30
Alignment explanation
Indices: 836774--836832 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
836764 TTGCAAAAAA
*
836774 TTTATAATTTTAAAA-TTTTTATAACTTTT
1 TTTATAACTTTAAAATTTTTTATAACTTTT
** *
836803 TTTATAACTTTATTATTTTTTATTACTTTT
1 TTTATAACTTTAAAATTTTTTATAACTTTT
836833 AAATTTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTATAACTTTAAAATTTTTTATAACTTTT
Found at i:837418 original size:10 final size:10
Alignment explanation
Indices: 837397--837446 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 10
837387 GAATATATTG
837397 AAATTGATAAA
1 AAATT-ATAAA
837408 AAATTATAAA
1 AAATTATAAA
*
837418 AAATAAT-AA
1 AAATTATAAA
*
837427 AACTTAT-AA
1 AAATTATAAA
*
837436 ATATTATAAA
1 AAATTATAAA
837446 A
1 A
837447 TATGAAAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
9 14 0.42
10 14 0.42
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
AAATTATAAA
Found at i:837501 original size:28 final size:29
Alignment explanation
Indices: 837436--837503 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
837426 AAACTTATAA
837436 ATATTATAAAA-TATGAAAATCTAATAAAC
1 ATATT-TAAAATTATGAAAATCTAATAAAC
**
837465 -TATAAAAAATTATG-AAAT-TAATAAAAC
1 ATATTTAAAATTATGAAAATCTAAT-AAAC
837492 ATATTTAAAATT
1 ATATTTAAAATT
837504 TTATAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 4 0.12
27 12 0.38
28 16 0.50
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (29 bp):
ATATTTAAAATTATGAAAATCTAATAAAC
Found at i:837520 original size:21 final size:21
Alignment explanation
Indices: 837465--837523 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
837455 TCTAATAAAC
*
837465 TATAAAAAATTA-TGAAA-TT
1 TATAAAAAATTATTAAAATTT
* *
837484 AATAAAACA-TATTTAAAATTT
1 TATAAAAAATTA-TTAAAATTT
837505 TATAAAAAATTATTAAAAT
1 TATAAAAAATTATTAAAAT
837524 CCTTAAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 2 0.06
19 7 0.23
20 4 0.13
21 16 0.52
22 2 0.06
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
TATAAAAAATTATTAAAATTT
Found at i:838216 original size:19 final size:18
Alignment explanation
Indices: 838192--838285 Score: 59
Period size: 17 Copynumber: 5.1 Consensus size: 18
838182 TTATGATTTA
838192 TTATAATGTATTATATTAT
1 TTATAATGT-TTATATTAT
*
838211 TTATAAT-TTTATATCAAT
1 TTATAATGTTTATAT-TAT
* *
838229 TT-TAATATTTAATAATATT
1 TTATAATGTTT-ATATTA-T
* * *
838248 TTAGAATTTATTATAATAT
1 TTATAATGT-TTATATTAT
*
838267 TTATAA-GTTTTTATTAT
1 TTATAATGTTTATATTAT
838284 TT
1 TT
838286 TATTATAGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
17 19 0.32
18 10 0.17
19 19 0.32
20 10 0.17
21 2 0.03
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATAATGTTTATATTAT
Found at i:838222 original size:30 final size:29
Alignment explanation
Indices: 838188--838336 Score: 93
Period size: 30 Copynumber: 5.2 Consensus size: 29
838178 TTTTTTATGA
838188 TTTATTATAATGTATTATATTATTTATAAT
1 TTTATTATAAT-TATTATATTATTTATAAT
838218 TTTA-TATCAATT-TTA-A-TATTTAATAAT
1 TTTATTAT-AATTATTATATTATTT-ATAAT
* * *
838245 ATT-TTAGAATTTATTATAATATTTATAAGTT
1 TTTATTATAA-TTATTATATTATTTATAA--T
* *
838276 TTTATTAT-TTTATTATAGTT-TTTATAAG
1 TTTATTATAATTATTATA-TTATTTATAAT
*
838304 TTTA-TATTAATT-TTAATATT-TTTAAAAT
1 TTTATTA-TAATTATT-ATATTATTTATAAT
838332 TTTAT
1 TTTAT
838337 ATTTTTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 31
0.70 0.07 0.23
Matches are distributed among these distances:
26 7 0.07
27 14 0.15
28 25 0.27
29 14 0.15
30 27 0.29
31 4 0.04
32 3 0.03
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (29 bp):
TTTATTATAATTATTATATTATTTATAAT
Found at i:838248 original size:18 final size:19
Alignment explanation
Indices: 838218--838268 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
838208 TATTTATAAT
*
838218 TTTATATCA-ATTTTA-ATA
1 TTTATATAATATTTTAGA-A
838236 TTTA-ATAATATTTTAGAA
1 TTTATATAATATTTTAGAA
838254 TTTATTATAATATTT
1 TTTA-TATAATATTT
838269 ATAAGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.11
18 15 0.54
19 1 0.04
20 9 0.32
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTATATAATATTTTAGAA
Found at i:838279 original size:22 final size:20
Alignment explanation
Indices: 838240--838300 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
838230 TTAATATTTA
* **
838240 ATAATATTTTAGAATTTATT
1 ATAATATTATAGTTTTTATT
838260 ATAATATTTATAAGTTTTTATT
1 ATAATA-TTAT-AGTTTTTATT
**
838282 ATTTTATTATAGTTTTTAT
1 ATAATATTATAGTTTTTAT
838301 AAGTTTATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 15 0.44
21 7 0.21
22 12 0.35
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
ATAATATTATAGTTTTTATT
Found at i:838307 original size:20 final size:21
Alignment explanation
Indices: 838267--838308 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
838257 ATTATAATAT
* *
838267 TTATAAGTTTTTATTATTTTA
1 TTATAAGTTTTTATAAGTTTA
838288 TTAT-AGTTTTTATAAGTTTA
1 TTATAAGTTTTTATAAGTTTA
838308 T
1 T
838309 ATTAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTATAAGTTTTTATAAGTTTA
Found at i:838358 original size:11 final size:11
Alignment explanation
Indices: 838333--838364 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
838323 TTTTAAAATT
838333 TTATATTTT--
1 TTATATTTTAA
838342 TTATATTTTAA
1 TTATATTTTAA
838353 TTATATTTTAA
1 TTATATTTTAA
838364 T
1 T
838365 GATTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATATTTTAA
Found at i:838369 original size:20 final size:20
Alignment explanation
Indices: 838333--838391 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
838323 TTTTAAAATT
*
838333 TTATATTTTTTATATTTTAA
1 TTATATTTTTAATATTTTAA
*
838353 TTATA-TTTTAATGATTTT-T
1 TTATATTTTTAAT-ATTTTAA
*
838372 TTTTATTTTTAATCATTTTA
1 TTATATTTTTAAT-ATTTTA
838392 TGGGGAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 10 0.31
20 22 0.69
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTATATTTTTAATATTTTAA
Found at i:846406 original size:20 final size:20
Alignment explanation
Indices: 846383--846425 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
846373 AATATGTCGA
846383 AAGATTATGTTAATATAATT
1 AAGATTATGTTAATATAATT
*
846403 AAGATTATGTTAATTTAATT
1 AAGATTATGTTAATATAATT
846423 AAG
1 AAG
846426 TAATTAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (20 bp):
AAGATTATGTTAATATAATT
Found at i:850318 original size:22 final size:22
Alignment explanation
Indices: 850293--850335 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
850283 ATTGGTCTTG
*
850293 AGACCTAGTCTCGAGACATAAA
1 AGACCTAGCCTCGAGACATAAA
*
850315 AGACCTTGCCTCGAGACATAA
1 AGACCTAGCCTCGAGACATAA
850336 CATGTAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (22 bp):
AGACCTAGCCTCGAGACATAAA
Found at i:852167 original size:18 final size:18
Alignment explanation
Indices: 852144--852179 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
852134 GTTGTAAAGT
852144 TTTATTTTTATTTA-TTTA
1 TTTA-TTTTATTTAGTTTA
852162 TTTATTTTATTTAGTTTA
1 TTTATTTTATTTAGTTTA
852180 AATTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTATTTTATTTAGTTTA
Found at i:854533 original size:18 final size:18
Alignment explanation
Indices: 854512--854550 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
854502 GATTGCGAGT
* *
854512 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
854530 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
854548 GAA
1 GAA
854551 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:855955 original size:4 final size:4
Alignment explanation
Indices: 855946--855979 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
855936 AAGTTTTATT
855946 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
855980 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:855987 original size:22 final size:22
Alignment explanation
Indices: 855929--855988 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
855919 AAGTGGCCCA
*
855929 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
855953 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
855974 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
855989 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:861412 original size:3 final size:3
Alignment explanation
Indices: 861404--861428 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
861394 TCCAATTTTC
861404 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
861429 TTTTTTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:867268 original size:32 final size:31
Alignment explanation
Indices: 867211--867297 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 31
867201 AATGGGGTTT
* * *
867211 TAGATTCCTTAAAAGTTAGAGAAAATTTTTTC
1 TAGATCCCTTAAAAGTTAGA-AAAAATATTTC
867243 TAGATCCCTTAAAAGTT-GATAAAAATATTTC
1 TAGATCCCTTAAAAGTTAGA-AAAAATATTTC
* * *
867274 T-GAGCCCTTAAAAGCTAAAAAAAA
1 TAGATCCCTTAAAAGTTAGAAAAAA
867298 ATGGCCCCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
30 18 0.38
31 13 0.28
32 16 0.34
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (31 bp):
TAGATCCCTTAAAAGTTAGAAAAAATATTTC
Found at i:870485 original size:18 final size:17
Alignment explanation
Indices: 870462--870495 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
870452 AAAAGTTAAA
870462 AGAGATGAAAATTAAATG
1 AGAGATGAAAA-TAAATG
*
870480 AGAGATTAAAATAAAT
1 AGAGATGAAAATAAAT
870496 TTTTTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.24
Consensus pattern (17 bp):
AGAGATGAAAATAAATG
Found at i:871763 original size:7 final size:7
Alignment explanation
Indices: 871751--871782 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
871741 TAATGGTGGT
871751 GATTTGA
1 GATTTGA
871758 GATTTGA
1 GATTTGA
871765 GATTTGA
1 GATTTGA
*
871772 AATTTGA
1 GATTTGA
871779 GATT
1 GATT
871783 CTGTTCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (7 bp):
GATTTGA
Found at i:878643 original size:24 final size:25
Alignment explanation
Indices: 878602--878649 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
878592 TATATTAATT
878602 TTTTTTAATTTAAAT-AAAATATTA
1 TTTTTTAATTTAAATAAAAATATTA
* * *
878626 TTTTTTATTTTTATTAAAAATATT
1 TTTTTTAATTTAAATAAAAATATT
878650 TAAATATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTTTAATTTAAATAAAAATATTA
Found at i:879188 original size:60 final size:60
Alignment explanation
Indices: 879118--879236 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
879108 TTGCTTTTTA
* * *
879118 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGCTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTG
*
879178 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTT
879237 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTG
Found at i:879991 original size:21 final size:22
Alignment explanation
Indices: 879956--879996 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
879946 AGCCCCTATA
*
879956 CTCTTCTATTTTTAAATTTAGT
1 CTCTTCTACTTTTAAATTTAGT
*
879978 CTCTT-TACTTTTAATTTTA
1 CTCTTCTACTTTTAAATTTA
879997 AAAAATTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.22, C:0.15, G:0.02, T:0.61
Consensus pattern (22 bp):
CTCTTCTACTTTTAAATTTAGT
Found at i:882513 original size:15 final size:15
Alignment explanation
Indices: 882493--882530 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
882483 AAAATTATTT
*
882493 AATATAATTTAAAT-A
1 AATATAAATT-AATCA
882508 AATATAAATTAATCA
1 AATATAAATTAATCA
882523 AATATAAA
1 AATATAAA
882531 ATTTTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AATATAAATTAATCA
Found at i:884162 original size:12 final size:12
Alignment explanation
Indices: 884145--884178 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
884135 TAAGTTTATG
884145 TATCTATCAATC
1 TATCTATCAATC
*
884157 TATCTATCTATC
1 TATCTATCAATC
884169 TATCT-TCAAT
1 TATCTATCAAT
884179 AATGTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (12 bp):
TATCTATCAATC
Found at i:884742 original size:6 final size:6
Alignment explanation
Indices: 884701--884743 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
884691 TTTGGCTAGT
* *
884701 GTTAGG GTTAAGG GTTTAGG GTTGGG GTTGGG GTTAGG GTTAG
1 GTTAGG GTT-AGG G-TTAGG GTTAGG GTTAGG GTTAGG GTTAG
884744 AGTTTAGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 23 0.70
7 8 0.24
8 2 0.06
ACGTcount: A:0.14, C:0.00, G:0.51, T:0.35
Consensus pattern (6 bp):
GTTAGG
Found at i:885026 original size:22 final size:21
Alignment explanation
Indices: 884997--885047 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
884987 ATAGAAAAAT
*
884997 AATA-TAAAATCCACATCATTCA
1 AATACTAAAATCCA-AT-ATTAA
*
885019 AA-ACTAAATTCCAATATTAA
1 AATACTAAAATCCAATATTAA
885039 AATACTAAA
1 AATACTAAA
885048 GTCATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 6 0.24
21 9 0.36
22 10 0.40
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (21 bp):
AATACTAAAATCCAATATTAA
Found at i:886698 original size:33 final size:29
Alignment explanation
Indices: 886661--886731 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
886651 TTTATACTAT
886661 ATATATACTTACACACTTTTTTTATTTTTGTAA
1 ATATATACTTACACA---TTTTTA-TTTTGTAA
* *
886694 ATATATACATATACATTTTTATTTTGTAA
1 ATATATACTTACACATTTTTATTTTGTAA
886723 ATATATACT
1 ATATATACT
886732 GGTACATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 16 0.46
30 6 0.17
33 13 0.37
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.52
Consensus pattern (29 bp):
ATATATACTTACACATTTTTATTTTGTAA
Found at i:903989 original size:30 final size:28
Alignment explanation
Indices: 903940--903997 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
903930 AAGTGAGATG
*
903940 TCTTAAAATTTTTAGAAATTCTAATTAA
1 TCTTAAAATTTTTAAAAATTCTAATTAA
*
903968 TCTTACAAATTTTTTAAAAATTTTAATTAA
1 TCTTA-AAA-TTTTTAAAAATTCTAATTAA
903998 ACACTCCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (28 bp):
TCTTAAAATTTTTAAAAATTCTAATTAA
Found at i:912130 original size:13 final size:15
Alignment explanation
Indices: 912095--912129 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
912085 GTGAAATATA
912095 ATCATTTTAATGAAT
1 ATCATTTTAATGAAT
912110 AT-ATTTTAAT-AAT
1 ATCATTTTAATGAAT
912123 ATCATTT
1 ATCATTT
912130 ATTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 12 0.63
15 2 0.11
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (15 bp):
ATCATTTTAATGAAT
Found at i:916200 original size:122 final size:122
Alignment explanation
Indices: 916029--916272 Score: 434
Period size: 122 Copynumber: 2.0 Consensus size: 122
916019 AGAGCAAAGC
* *
916029 ATAATTGACTGGTCTTTCAGCCAACGATTGGCTCTCCACTAGTTCATCAACCTGATTAGTGTTTT
1 ATAATTGACTAGTCTTTCAGCCAACAATTGGCTCTCCACTAGTTCATCAACCTGATTAGTGTTTT
*
916094 TCTTATTTTGTTTCAGCTGCTAGGACGTGGAAAGATGTTACTTCAAAGTTCCTAATG
66 TCTTAATTTGTTTCAGCTGCTAGGACGTGGAAAGATGTTACTTCAAAGTTCCTAATG
* * *
916151 ATAATTGACTAGTCTTTCAGCCAATAATTGGCTCTCCACTAGTTCATCAACCTGTTTAGTTTTTT
1 ATAATTGACTAGTCTTTCAGCCAACAATTGGCTCTCCACTAGTTCATCAACCTGATTAGTGTTTT
916216 TCTTAATTTGTTTCAGCTGCTAGGACGTGGAAAGATGTTACTTCAAAGTTCCTAATG
66 TCTTAATTTGTTTCAGCTGCTAGGACGTGGAAAGATGTTACTTCAAAGTTCCTAATG
916273 TTCTTACATA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 116 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (122 bp):
ATAATTGACTAGTCTTTCAGCCAACAATTGGCTCTCCACTAGTTCATCAACCTGATTAGTGTTTT
TCTTAATTTGTTTCAGCTGCTAGGACGTGGAAAGATGTTACTTCAAAGTTCCTAATG
Found at i:918750 original size:44 final size:45
Alignment explanation
Indices: 918673--918793 Score: 181
Period size: 44 Copynumber: 2.7 Consensus size: 45
918663 TCTAAATCAT
*
918673 TGAGTGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAATAA
1 TGAGTGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAACAA
* *
918718 TGAGTGGTTTA-CCACATTGTATTAGCAGCTTTTATTTGCAACAA
1 TGAGTGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAACAA
* * *
918762 TGAGTGGTCTATCCACACCGTACTAGCAACTT
1 TGAGTGGTTTATCCACACTGTATTAGCAACTT
918794 GTCTATAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 40 0.60
45 27 0.40
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (45 bp):
TGAGTGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAACAA
Found at i:918897 original size:21 final size:21
Alignment explanation
Indices: 918867--918906 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
918857 TGGTTTATCC
*
918867 ACAATGAGTGGTTCATCCACA
1 ACAATAAGTGGTTCATCCACA
*
918888 ACAATAAGTGGTTTATCCA
1 ACAATAAGTGGTTCATCCA
918907 TGACGTGGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (21 bp):
ACAATAAGTGGTTCATCCACA
Found at i:922778 original size:28 final size:28
Alignment explanation
Indices: 922738--922807 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 28
922728 TTGAAATCTT
*
922738 TTAAAATAATTATATTA-TTTTTTA-ATA
1 TTAAAAT-TTTATATTACTTTTTTATATA
*
922765 TTTAATAATTTTATA-TACTTTTTTATTTA
1 -TTAA-AATTTTATATTACTTTTTTATATA
922794 TTAAAATTTTATAT
1 TTAAAATTTTATAT
922808 ATATAGGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
27 11 0.31
28 20 0.56
29 5 0.14
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (28 bp):
TTAAAATTTTATATTACTTTTTTATATA
Found at i:924508 original size:5 final size:5
Alignment explanation
Indices: 924498--924525 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
924488 TCTTGTTCGA
924498 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
924526 TAAAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:928853 original size:44 final size:45
Alignment explanation
Indices: 928790--928906 Score: 166
Period size: 44 Copynumber: 2.6 Consensus size: 45
928780 AACCATTGAG
*
928790 TGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAATAATGAA
1 TGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAACAATGAA
*
928835 TGGTTTA-CCACACTGTATTAGCAGA-TTTTATTTGCAACAATGAG
1 TGGTTTATCCACACTGTATTAGCA-ACTTTTATTTGCAACAATGAA
* * *
928879 TGGTCTATCCACACCGTACTAGCAACTT
1 TGGTTTATCCACACTGTATTAGCAACTT
928907 GTCTATAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
44 40 0.62
45 24 0.38
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (45 bp):
TGGTTTATCCACACTGTATTAGCAACTTTTATTTGCAACAATGAA
Found at i:929008 original size:21 final size:21
Alignment explanation
Indices: 928978--929017 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
928968 TGGTTTATCC
*
928978 ACAATGAGTGGTTCATCCACA
1 ACAATAAGTGGTTCATCCACA
*
928999 ACAATAAGTGGTTTATCCA
1 ACAATAAGTGGTTCATCCA
929018 TGACGTGGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (21 bp):
ACAATAAGTGGTTCATCCACA
Found at i:929812 original size:4 final size:4
Alignment explanation
Indices: 929803--929832 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
929793 ATTAAACACA
929803 AATT AATT AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
929833 AAATAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:935517 original size:41 final size:41
Alignment explanation
Indices: 935472--935574 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
935462 TTTTCGAATC
935472 AATGAAAAGGTTGAAAAGGATGTTATCTGAAAACAATAACA
1 AATGAAAAGGTTGAAAAGGATGTTATCTGAAAACAATAACA
** *
935513 AATGAAAAGGTTGAAAAGGATGTTATCTGAAAATGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCTGAAAACAATAACA
*
935554 AATGAAAAGGTCGAAAAGGAT
1 AATGAAAAGGTTGAAAAGGAT
935575 ATCAATGAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCTGAAAACAATAACA
Found at i:935586 original size:24 final size:24
Alignment explanation
Indices: 935541--935612 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
935531 GATGTTATCT
*
935541 GAAAATGATATCAAATGAAAAGGTC
1 GAAAAGGATATC-AATGAAAAGGTC
935566 GAAAAGGATATCAATGAAAAGGTC
1 GAAAAGGATATCAATGAAAAGGTC
* *
935590 GAAAAGAATAGCAATGAAAAGGT
1 GAAAAGGATATCAATGAAAAGGT
935613 TGGTATCTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 33 0.75
25 11 0.25
ACGTcount: A:0.53, C:0.07, G:0.24, T:0.17
Consensus pattern (24 bp):
GAAAAGGATATCAATGAAAAGGTC
Found at i:937037 original size:55 final size:55
Alignment explanation
Indices: 936872--937037 Score: 224
Period size: 55 Copynumber: 3.0 Consensus size: 55
936862 TTTGACAGAC
* * * *
936872 GACCTATGACGCGGTAGTGTGGCCCTATTTCGAATACTCACACAGGTGGACACAC
1 GACCTATGACACGGTAGTGTAGCCCTATTTCGAATACTCACACAAGTGGACACAT
** * * *
936927 GATTTACGACACGGTAGTGTAGCTCTATTTCGAATACTCACACGAGTGGACACAT
1 GACCTATGACACGGTAGTGTAGCCCTATTTCGAATACTCACACAAGTGGACACAT
* * *
936982 GACCTATGACACGGTCGTGTAGCCCTATTTTGAATACTCACACAAGTGGATACAT
1 GACCTATGACACGGTAGTGTAGCCCTATTTCGAATACTCACACAAGTGGACACAT
937037 G
1 G
937038 GGCTGGGACA
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 94 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (55 bp):
GACCTATGACACGGTAGTGTAGCCCTATTTCGAATACTCACACAAGTGGACACAT
Found at i:937056 original size:55 final size:55
Alignment explanation
Indices: 936888--937056 Score: 167
Period size: 55 Copynumber: 3.1 Consensus size: 55
936878 TGACGCGGTA
* * * ** * ***
936888 GTGTGGCCCTATTTCGAATACTCACACAGGTGGACACACGATTTACGACACGGTA
1 GTGTAGCCCTATTTCGAATACTCACACAAGTGGACACATGACCTAGGACACGACC
* * * **
936943 GTGTAGCTCTATTTCGAATACTCACACGAGTGGACACATGACCTATGACACGGTC
1 GTGTAGCCCTATTTCGAATACTCACACAAGTGGACACATGACCTAGGACACGACC
* * ** *
936998 GTGTAGCCCTATTTTGAATACTCACACAAGTGGATACATGGGCTGGGACACGACC
1 GTGTAGCCCTATTTCGAATACTCACACAAGTGGACACATGACCTAGGACACGACC
937053 GTGT
1 GTGT
937057 GTCCAGGCTT
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 95 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (55 bp):
GTGTAGCCCTATTTCGAATACTCACACAAGTGGACACATGACCTAGGACACGACC
Found at i:938604 original size:46 final size:46
Alignment explanation
Indices: 938537--938698 Score: 258
Period size: 46 Copynumber: 3.6 Consensus size: 46
938527 TTTGAGTACT
*
938537 TCTGATCAAGAGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
938583 TCTGATCAAGAGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
938629 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTGGCTACACTTA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
938674 TCTGATC-AGGGACAAA-TGATAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTG
938699 ATCATACATA
Statistics
Matches: 110, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
43 9 0.08
44 8 0.07
45 19 0.17
46 74 0.67
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (46 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:940459 original size:48 final size:48
Alignment explanation
Indices: 940400--940642 Score: 288
Period size: 48 Copynumber: 5.1 Consensus size: 48
940390 AAGCTGCTAG
* * * * * *
940400 TACGTTGTGGATGAACCATTGGTCGTGCAGATAAATTGTCGACTAAGA
1 TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
* **
940448 TACGTTTTGGATGAACCACTAGTCGTGTAGATAAACTATCGACTAAGG
1 TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
* * *
940496 TACGTTTTGGATGAACCACTGGTCGTGCAGATAAACTACCAACTAAAA
1 TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
* * ** *
940544 TACGTTTTGGATGAACCATTAGTCAAGTAGATAAACTACCGACTAAAA
1 TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
* ** * *
940592 TACGCTTTGGATGAACCACTGGTCAAGTAAATAAACTGTCGACTAAAA
1 TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
940640 TAC
1 TAC
940643 ATTGCGGATA
Statistics
Matches: 170, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 170 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (48 bp):
TACGTTTTGGATGAACCACTGGTCGTGTAGATAAACTATCGACTAAAA
Found at i:940500 original size:96 final size:95
Alignment explanation
Indices: 940398--940642 Score: 319
Period size: 96 Copynumber: 2.5 Consensus size: 95
940388 AAAAGCTGCT
* * *
940398 AGTACGTTGTGGATGAACCATTGGTCGTGCAGATAAATTGTCGACTAAGATACGTTTTGGATGAA
1 AGTACGTT-TGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAAAATACGTTTTGGATGAA
** *
940463 CCACTAGTCGTGTAGATAAACTATCGACTAA
65 CCACTAGTCAAGTAGATAAACTACCGACTAA
* ** *
940494 GGTACGTTTTGGATGAACCACTGGTCGTGCAGATAAACTACCAACTAAAATACGTTTTGGATGAA
1 AGTACG-TTTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAAAATACGTTTTGGATGAA
*
940559 CCATTAGTCAAGTAGATAAACTACCGACTAA
65 CCACTAGTCAAGTAGATAAACTACCGACTAA
* ** * *
940590 AATACGCTTTGGATGAACCACTGGTCAAGTAAATAAACTGTCGACTAAAATAC
1 AGTACG-TTTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAAAATAC
940643 ATTGCGGATA
Statistics
Matches: 127, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
96 125 0.98
97 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (95 bp):
AGTACGTTTGGATGAACCACTGGTCGTGCAGATAAACTGTCGACTAAAATACGTTTTGGATGAAC
CACTAGTCAAGTAGATAAACTACCGACTAA
Found at i:944764 original size:3 final size:3
Alignment explanation
Indices: 944758--944783 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
944748 CACCTCCCCA
944758 TCG TCG TCG TCG TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TC
944784 ATTTGCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.31, T:0.35
Consensus pattern (3 bp):
TCG
Found at i:946503 original size:16 final size:17
Alignment explanation
Indices: 946482--946515 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
946472 CCATTTTGAA
946482 ATATTA-ATTAATTTTT
1 ATATTATATTAATTTTT
946498 ATATTATATTAATTTTT
1 ATATTATATTAATTTTT
946515 A
1 A
946516 CAAAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATTATATTAATTTTT
Found at i:947459 original size:22 final size:22
Alignment explanation
Indices: 947425--947472 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
947415 AATTTGAAAT
* *
947425 AAAAAATTTAATTAAAAATAAA
1 AAAAAACTAAATTAAAAATAAA
* *
947447 AAAAAACTAAATTACAAATATA
1 AAAAAACTAAATTAAAAATAAA
947469 AAAA
1 AAAA
947473 GCATATTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAAAACTAAATTAAAAATAAA
Found at i:974801 original size:17 final size:17
Alignment explanation
Indices: 974779--974842 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
974769 CATTAAGGGC
*
974779 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
974796 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
974815 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
974832 TACAATTAGAA
1 TACAATTAGAA
974843 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:974821 original size:19 final size:19
Alignment explanation
Indices: 974797--974850 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
974787 AAAGCTGTAT
974797 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
974816 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
974833 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
974851 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:974828 original size:36 final size:36
Alignment explanation
Indices: 974780--974850 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
974770 ATTAAGGGCT
974780 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
974816 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
974851 TTACATAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:979678 original size:48 final size:48
Alignment explanation
Indices: 979607--979699 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
979597 TTTCTTTGCT
* *
979607 TAAAAATGCCTAATTCAGCCTAACTCGCAACGATAAATGATTCAACAG
1 TAAAAATACCTAAGTCAGCCTAACTCGCAACGATAAATGATTCAACAG
* *
979655 TAAAAATACTTAAGTCAGCCTAACTCGCAATGATAAATGATTCAA
1 TAAAAATACCTAAGTCAGCCTAACTCGCAACGATAAATGATTCAA
979700 TAGAATTCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (48 bp):
TAAAAATACCTAAGTCAGCCTAACTCGCAACGATAAATGATTCAACAG
Found at i:979917 original size:17 final size:17
Alignment explanation
Indices: 979895--979958 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
979885 CATCAAGGGC
*
979895 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
979912 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
979931 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
979948 TACAATTAGAA
1 TACAATTAGAA
979959 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:979937 original size:19 final size:19
Alignment explanation
Indices: 979913--979966 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
979903 AAAGCTGTAT
979913 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
979932 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
979949 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
979967 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:979944 original size:36 final size:36
Alignment explanation
Indices: 979896--979966 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
979886 ATCAAGGGCT
979896 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
979932 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
979967 TTACATAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:982415 original size:43 final size:42
Alignment explanation
Indices: 982267--982424 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
982257 ATGTGATTTT
982267 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACAG-TGGCATCGTATTT--GA-TTAC
* * *
982311 GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTAC
1 GTGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGATTAC
* * **
982353 GTGTAAAACC-CTGTTTGGGACAGTAACATCGTTATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTGATTAC
*
982396 ATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 GTGTAAGACCACGTCTGGGACAG-TGGCAT
982425 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 29 0.31
43 32 0.34
44 29 0.31
45 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGATTAC
Found at i:986288 original size:4 final size:4
Alignment explanation
Indices: 986244--986276 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
986234 ATAATTTAAT
986244 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TTAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA -TAAA T
986277 TTTAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:986367 original size:78 final size:76
Alignment explanation
Indices: 986265--986490 Score: 71
Period size: 76 Copynumber: 2.9 Consensus size: 76
986255 TAAATAAATA
* * *
986265 AATAAATTAAATTTT-AAAAT-AAATTTAATTTTAAAAA-TAGAATTTAATTTAAA-ACAATTAA
1 AATAAATTTAATTTTAAAAATAAAATTTAA-TTAAAAAATTA-AAATTAA-TTAAAGA-AA-T-A
***
986326 AATTAATTAAA-GAAATA
60 AATTAATTAAATTTTA-A
* * *
986343 AATTAATTTAATTTT-AAAAT-AAATTTAATTTTAAAAATAAAAATTAATTAAA-AAATAAAAAT
1 AATAAATTTAATTTTAAAAATAAAATTTAA-TTAAAAAATTAAAATTAATTAAAGAAAT--AAAT
***
986405 TAATTAAA-GAAATA
63 TAATTAAATTTTA-A
* * * * *
986419 AATTAATTAAAGTTT-AAAAT-AAATTTAATTTAAACAA-TAAAATTTAATTTAAAAAAATCAAA
1 AATAAATTTAATTTTAAAAATAAAATTTAA-TTAAAAAATTAAAA-TTAA-TTAAAGAAAT--AA
986481 ATTAATTAAA
61 ATTAATTAAA
986491 AAGGTCAATT
Statistics
Matches: 133, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
75 5 0.04
76 58 0.44
77 11 0.08
78 58 0.44
79 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (76 bp):
AATAAATTTAATTTTAAAAATAAAATTTAATTAAAAAATTAAAATTAATTAAAGAAATAAATTAA
TTAAATTTTAA
Found at i:986448 original size:154 final size:150
Alignment explanation
Indices: 986208--986593 Score: 507
Period size: 154 Copynumber: 2.6 Consensus size: 150
986198 CCCATTTGGA
* * *
986208 TTAAAATTAAATTTAATTTAAAAAATATAATTTAATTAAAAAAT-A-AA-TAAATAAATAAATAA
1 TTAAAA-TAAATTTAATTTTAAAAATATAATTTAATTAAAAAATAATAATTAAAGAAATAAATTA
* * * *
986270 ATTAAATTTTAAAATAAATTTAATTTTAAA-AATAGAATTTAATTTAAAACAATTAAAATTAATT
65 ATTAAAGTTTAAAATAAATTTAA-TTTAAACAATAAAATTTAATTTAAAAAAATCAAAATTAATT
* *
986334 AAAGAA-ATAAATTAATTTAATT
129 AAA-AAGATAAATTAATTAAAGT
* *
986356 TTAAAATAAATTTAATTTTAAAAATAAAAATTAATTAAAAAATAAAAATTAATTAAAGAAATAAA
1 TTAAAATAAATTTAATTTTAAAAATATAATTTAATTAAAAAAT---AA-TAATTAAAGAAATAAA
986421 TTAATTAAAGTTTAAAATAAATTTAATTTAAACAATAAAATTTAATTTAAAAAAATCAAAATTAA
62 TTAATTAAAGTTTAAAATAAATTTAATTTAAACAATAAAATTTAATTTAAAAAAATCAAAATTAA
* *
986486 TTAAAAAGGTCAATTAATTAAAGT
127 TTAAAAAGATAAATTAATTAAAGT
*
986510 TTAAAATAAATTTAATTTTAAAAAATATAATTTAATT-AAAAATAATAATTGAAGAAATAAATTA
1 TTAAAATAAATTTAATTTT-AAAAATATAATTTAATTAAAAAATAATAATTAAAGAAATAAATTA
*
986574 ATTATAGTTTTAAAA-AAATT
65 ATTAAAG-TTTAAAATAAATT
986594 AAAAAGTGAT
Statistics
Matches: 210, Mismatches: 17, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
147 34 0.16
148 6 0.03
150 29 0.14
151 10 0.05
153 10 0.05
154 106 0.50
155 15 0.07
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (150 bp):
TTAAAATAAATTTAATTTTAAAAATATAATTTAATTAAAAAATAATAATTAAAGAAATAAATTAA
TTAAAGTTTAAAATAAATTTAATTTAAACAATAAAATTTAATTTAAAAAAATCAAAATTAATTAA
AAAGATAAATTAATTAAAGT
Found at i:986513 original size:78 final size:77
Alignment explanation
Indices: 986244--986593 Score: 423
Period size: 78 Copynumber: 4.6 Consensus size: 77
986234 ATAATTTAAT
* * * * * *
986244 TAAAAAATAAATAAATAAATAAATAAATTAAATTTTAAAATAAATTTAATTTTAAAAATAGAATT
1 TAAAAATTAATTAAAGAAATAAATTAATTAAAGTTTAAAATAAATTTAATTTTAAAAATAAAATT
*
986309 TAATTTAAAACAA
66 TAA-TTAAAAAAA
* * * *
986322 TTAAAATTAATTAAAGAAATAAATTAATTTAATTTTAAAATAAATTTAATTTTAAAAATAAAAAT
1 TAAAAATTAATTAAAGAAATAAATTAATTAAAGTTTAAAATAAATTTAATTTTAAAAATAAAATT
986387 TAATT-AAAAAA
66 TAATTAAAAAAA
986398 TAAAAATTAATTAAAGAAATAAATTAATTAAAGTTTAAAATAAATTTAA-TTTAAACAATAAAAT
1 TAAAAATTAATTAAAGAAATAAATTAATTAAAGTTTAAAATAAATTTAATTTTAAA-AATAAAAT
986462 TTAATTTAAAAAAA
65 TTAA-TTAAAAAAA
* * * *
986476 TCAAAATTAATTAAA-AAGGTCAATTAATTAAAGTTTAAAATAAATTTAATTTTAAAAAATATAA
1 TAAAAATTAATTAAAGAA-ATAAATTAATTAAAGTTTAAAATAAATTTAATTTT-AAAAATAAAA
986540 TTTAATT--AAAAA
64 TTTAATTAAAAAAA
* *
986552 T---AA-TAATTGAAGAAATAAATTAATTATAGTTTTAAAA-AAATT
1 TAAAAATTAATTAAAGAAATAAATTAATTAAAG-TTTAAAATAAATT
986594 AAAAAGTGAT
Statistics
Matches: 243, Mismatches: 21, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
72 24 0.10
73 11 0.05
75 6 0.02
76 68 0.28
77 6 0.02
78 111 0.46
79 14 0.06
80 3 0.01
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (77 bp):
TAAAAATTAATTAAAGAAATAAATTAATTAAAGTTTAAAATAAATTTAATTTTAAAAATAAAATT
TAATTAAAAAAA
Found at i:986550 original size:17 final size:18
Alignment explanation
Indices: 986208--986559 Score: 165
Period size: 18 Copynumber: 18.8 Consensus size: 18
986198 CCCATTTGGA
*
986208 TTAAAATTA-AATTTAAT
1 TTAAAAATATAATTTAAT
986225 TTAAAAAATATAATTTAA-
1 TT-AAAAATATAATTTAAT
* *
986243 TTAAAAA-ATAA-ATAAA
1 TTAAAAATATAATTTAAT
* *
986259 TAAATAAATA-AATTAAAT
1 TTAA-AAATATAATTTAAT
*
986277 TTTAAAATA-AATTTAATT
1 TTAAAAATATAATTTAA-T
*
986295 TTAAAAATAGAATTTAAT
1 TTAAAAATATAATTTAAT
*
986313 TTAAAACA-ATTAAAATTAAT
1 TTAAAA-ATA-T-AATTTAAT
*
986333 TAAAGAAATAAATTAATTTAAT
1 TTAA-AAAT--A-TAATTTAAT
*
986355 TTTAAAATA-AATTTAATT
1 TTAAAAATATAATTTAA-T
* *
986373 TTAAAAATAAAAATTAAT
1 TTAAAAATATAATTTAAT
* * *
986391 TAAAAAATAAAAATTAAT
1 TTAAAAATATAATTTAAT
* *
986409 TAAAGAAATAAATTAATTAAAGT
1 TTAA-AAAT--A-TAATTTAA-T
986432 TT-AAAATA-AATTTAAT
1 TTAAAAATATAATTTAAT
*
986448 TTAAACAATAAAATTTAAT
1 TTAAA-AATATAATTTAAT
* *
986467 TTAAAAAAATCAAAATTAA-
1 TTAAAAATAT--AATTTAAT
*
986486 TTAAAAAGGTCAATTAATTAAAGT
1 TTAAAAA--T--A-TAATTTAA-T
986510 TT-AAAATA-AATTTAATT
1 TTAAAAATATAATTTAA-T
986527 TTAAAAAATATAATTTAA-
1 TT-AAAAATATAATTTAAT
986545 TTAAAAATAATAATT
1 TTAAAAAT-ATAATT
986560 GAAGAAATAA
Statistics
Matches: 265, Mismatches: 32, Indels: 75
0.71 0.09 0.20
Matches are distributed among these distances:
15 3 0.01
16 10 0.04
17 53 0.20
18 76 0.29
19 54 0.20
20 24 0.09
21 12 0.05
22 20 0.08
23 10 0.04
24 3 0.01
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (18 bp):
TTAAAAATATAATTTAAT
Found at i:986853 original size:4 final size:4
Alignment explanation
Indices: 986833--986871 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
986823 GGTAAATTTT
* * *
986833 TTTC TTTC CTTC CTTC TTTC TTTC TTTT TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
986872 TAACACCCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:986864 original size:12 final size:12
Alignment explanation
Indices: 986829--986872 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 12
986819 TTCAGGTAAA
986829 TTTTTTTCTTTCC
1 TTTTTTTCTTT-C
986842 TTCCTTCTTTCTTTC
1 TT--TT-TTTCTTTC
986857 TTTTTTTCTTTC
1 TTTTTTTCTTTC
986869 TTTT
1 TTTT
986873 AACACCCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.43
13 4 0.14
15 5 0.18
16 7 0.25
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:989454 original size:27 final size:27
Alignment explanation
Indices: 989416--989505 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 27
989406 TTTTCTTAAT
*
989416 GTTTTTGGATAACATAAAGAACTATAA
1 GTTTTTGAATAACATAAAGAACTATAA
* * *
989443 GTTTTTGAATAACATAAAATCAAGTACTAT
1 GTTTTTGAATAACAT-AAA-GAACTA-TAA
* *
989473 GATTTTTGAATAACATAAAGAATTATGA
1 G-TTTTTGAATAACATAAAGAACTATAA
989501 GTTTT
1 GTTTT
989506 GATTTTTTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 18 0.35
28 5 0.10
29 8 0.16
30 6 0.12
31 14 0.27
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (27 bp):
GTTTTTGAATAACATAAAGAACTATAA
Found at i:989499 original size:26 final size:26
Alignment explanation
Indices: 989417--989507 Score: 83
Period size: 31 Copynumber: 3.3 Consensus size: 26
989407 TTTCTTAATG
* * *
989417 TTTTTGGATAACATAAAGAACTATAA
1 TTTTTGAATAACATAAAGAATTATGA
*
989443 GTTTTTGAATAACATAAAATCAAGTACTATGA
1 -TTTTTGAATAACAT-AAA-GAA-T--TATGA
989475 TTTTTGAATAACATAAAGAATTATGA
1 TTTTTGAATAACATAAAGAATTATGA
*
989501 GTTTTGA
1 TTTTTGA
989508 TTTTTTTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
26 11 0.21
27 13 0.25
28 4 0.08
29 4 0.08
30 3 0.06
31 14 0.26
32 4 0.08
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (26 bp):
TTTTTGAATAACATAAAGAATTATGA
Found at i:989876 original size:12 final size:12
Alignment explanation
Indices: 989855--989915 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
989845 TAATAATAAT
989855 ATTA-TATTAAA
1 ATTATTATTAAA
989866 ATTATTATT-AA
1 ATTATTATTAAA
*
989877 A-TATTATAAATA
1 ATTATTATTAA-A
989889 ATTA-TATTAAGA
1 ATTATTATTAA-A
989901 ATT-TTATT-AA
1 ATTATTATTAAA
989911 ATTAT
1 ATTAT
989916 ATTTAATAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
10 10 0.24
11 10 0.24
12 19 0.46
13 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (12 bp):
ATTATTATTAAA
Found at i:989881 original size:39 final size:38
Alignment explanation
Indices: 989836--989928 Score: 106
Period size: 34 Copynumber: 2.5 Consensus size: 38
989826 TTAGGCATCG
989836 AAATATTCTTAATAATAATATTATATTAA-AATTATTATT
1 AAATATT-TTAATAATAATATTATATTAAGAATT-TTATT
*
989875 AAATATTAT-A-AAT-A-ATTATATTAAGAATTTTATT
1 AAATATTTTAATAATAATATTATATTAAGAATTTTATT
989909 AAATTATATTTAATAATAAT
1 AAA-TAT-TTTAATAATAAT
989929 TATGTTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
34 18 0.40
35 8 0.18
36 5 0.11
37 2 0.04
38 4 0.09
39 8 0.18
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (38 bp):
AAATATTTTAATAATAATATTATATTAAGAATTTTATT
Found at i:989895 original size:34 final size:37
Alignment explanation
Indices: 989847--989939 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 37
989837 AATATTCTTA
989847 ATAATAAT-ATTATATTAAAATTATTATTAAA-TAT-T
1 ATAATAATAATTATATTAAAATT-TTATTAAATTATAT
989882 AT-A-AATAATTATATTAAGAATTTTATTAAATTATAT
1 ATAATAATAATTATATTAA-AATTTTATTAAATTATAT
* *
989918 TTAATAATAATTATGTTAAAAT
1 ATAATAATAATTATATTAAAAT
989940 ATGACTAAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
33 3 0.06
34 19 0.38
35 9 0.18
36 2 0.04
37 4 0.08
38 13 0.26
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (37 bp):
ATAATAATAATTATATTAAAATTTTATTAAATTATAT
Found at i:990325 original size:19 final size:19
Alignment explanation
Indices: 990290--990327 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
990280 AGGACAAAAA
*
990290 ATATTATTTTCTCTTTTTT
1 ATATTATTTTCTATTTTTT
990309 ATATATATTTT-TATTTTTT
1 ATAT-TATTTTCTATTTTTT
990328 CTTGCTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
ATATTATTTTCTATTTTTT
Found at i:990781 original size:21 final size:21
Alignment explanation
Indices: 990746--990786 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
990736 AAAATAGAAA
*
990746 AAAATAAAGAGAGAAATAATGT
1 AAAAGAAAGAGAGAAA-AATGT
990768 AAAAGAAA-AGAGAAAAATG
1 AAAAGAAAGAGAGAAAAATG
990787 AAAGAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (21 bp):
AAAAGAAAGAGAGAAAAATGT
Found at i:991330 original size:15 final size:16
Alignment explanation
Indices: 991295--991336 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
991285 AGAGTGGAAA
*
991295 AAAAAATTGAAAGGAT
1 AAAAAATTAAAAGGAT
*
991311 GAAAAATTAAAAGG-T
1 AAAAAATTAAAAGGAT
*
991326 AAAAAACTAAA
1 AAAAAATTAAA
991337 GAGATGAAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.17
Consensus pattern (16 bp):
AAAAAATTAAAAGGAT
Found at i:1003590 original size:32 final size:32
Alignment explanation
Indices: 1003549--1003613 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
1003539 ATGTTATGAA
1003549 GATAAATTTTATTTTACATCCATCTTTCCAGG
1 GATAAATTTTATTTTACATCCATCTTTCCAGG
1003581 GATAAATTTTATTTTACATCCATCTTTCCAGG
1 GATAAATTTTATTTTACATCCATCTTTCCAGG
1003613 G
1 G
1003614 CGACGTGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (32 bp):
GATAAATTTTATTTTACATCCATCTTTCCAGG
Done.