Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 34 of 196
Found at i:9491104 original size:41 final size:41
Alignment explanation
Indices: 9491014--9491110 Score: 176
Period size: 41 Copynumber: 2.4 Consensus size: 41
9491004 GACTTTACGT
*
9491014 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGTTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
9491055 CTAGCAGGTTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGTTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
*
9491096 CTAGCAGGTGAAGTG
1 CTAGCAGGTTAAGTG
9491111 CCAGTGAATC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (41 bp):
CTAGCAGGTTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
Found at i:9491360 original size:34 final size:35
Alignment explanation
Indices: 9491291--9491387 Score: 94
Period size: 36 Copynumber: 2.7 Consensus size: 35
9491281 TTGTTGGATA
*
9491291 TATATATGTATGCATTCGGCATATGTGGATTATAAG
1 TATATATG-ATGCATTCGGCATATGTAGATTATAAG
9491327 TATATATG-TGCATTCGGCACT-TGTAG-TTGATAAG
1 TATATATGATGCATTCGGCA-TATGTAGATT-ATAAG
* *
9491361 TATAAATAT-ATGCTTTTGGCATATGTA
1 TAT--ATATGATGCATTCGGCATATGTA
9491388 TTTAAAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
33 2 0.04
34 23 0.44
35 2 0.04
36 25 0.48
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (35 bp):
TATATATGATGCATTCGGCATATGTAGATTATAAG
Found at i:9498848 original size:17 final size:18
Alignment explanation
Indices: 9498822--9498857 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
9498812 AGAGTCAATT
9498822 TAGGCGTGTGGG-CCATA
1 TAGGCGTGTGGGCCCATA
*
9498839 TAGGCTTGTGGGCCCATA
1 TAGGCGTGTGGGCCCATA
9498857 T
1 T
9498858 TTTTGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (18 bp):
TAGGCGTGTGGGCCCATA
Found at i:9500113 original size:24 final size:25
Alignment explanation
Indices: 9500081--9500146 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
9500071 CAGCTCGAAA
* *
9500081 GAGCATCCCGTTAT-TAGGTCTCAT
1 GAGCTTCCCGTTATATAGGTCTCAC
* **
9500105 GAGCTTCCCGTTATATAGTTCTTGC
1 GAGCTTCCCGTTATATAGGTCTCAC
9500130 GAGCTTCCCGTTA-ATAG
1 GAGCTTCCCGTTATATAG
9500147 CTCTTCAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 17 0.47
25 19 0.53
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGGTCTCAC
Found at i:9500151 original size:24 final size:25
Alignment explanation
Indices: 9500105--9500151 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
9500095 TAGGTCTCAT
*
9500105 GAGCTTCCCGTTATATAGTTCTTGC
1 GAGCTTCCCGTTATATAGCTCTTGC
9500130 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
9500152 CAGAGCATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTGC
Found at i:9500157 original size:24 final size:24
Alignment explanation
Indices: 9500080--9500157 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
9500070 ACAGCTCGAA
* * *
9500080 AGAGCATCCCGTTATTAGGTC-TC
1 AGAGCTTCCCGTTAATAGCTCTTC
*
9500103 ATGAGCTTCCCGTTATATAGTTCTTGC
1 A-GAGCTTCCCGTTA-ATAGCTCTT-C
9500130 -GAGCTTCCCGTTAATAGCTCTTC
1 AGAGCTTCCCGTTAATAGCTCTTC
9500153 AGAGC
1 AGAGC
9500158 ATCGCGATCG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
23 2 0.04
24 24 0.52
25 18 0.39
26 1 0.02
27 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (24 bp):
AGAGCTTCCCGTTAATAGCTCTTC
Found at i:9500323 original size:25 final size:24
Alignment explanation
Indices: 9500273--9500330 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
9500263 GCCTCTCCGT
*
9500273 AGCTTCCCGATATTGGCTAGCTTG
1 AGCTTCCCGATATTGACTAGCTTG
*
9500297 AGCCTTCCCGATATTGACTTG-TATG
1 AG-CTTCCCGATATTGACTAGCT-TG
9500322 AGCTTCCCG
1 AGCTTCCCG
9500331 TTAATAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (24 bp):
AGCTTCCCGATATTGACTAGCTTG
Found at i:9500428 original size:26 final size:25
Alignment explanation
Indices: 9500319--9500430 Score: 97
Period size: 25 Copynumber: 4.5 Consensus size: 25
9500309 ATTGACTTGT
* *
9500319 ATGAGCTTCCCGTTA-ATAGCT-AT
1 ATGAGCTTCCCGTTATATGGCTCAC
* * *
9500342 TTAGAGCTTCTCGTTACATGGCTCAC
1 AT-GAGCTTCCCGTTATATGGCTCAC
*
9500368 ATGAGCTTTCCGTTATATGGCTCGA-
1 ATGAGCTTCCCGTTATATGGCTC-AC
*
9500393 AAGAGCTTCCCGTT-TATGTGCTCAC
1 ATGAGCTTCCCGTTATATG-GCTCAC
9500418 ATGAGCATTCCCG
1 ATGAGC-TTCCCG
9500431 AATATGAATT
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.01
24 17 0.24
25 44 0.62
26 9 0.13
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCAC
Found at i:9502363 original size:24 final size:24
Alignment explanation
Indices: 9502272--9502363 Score: 62
Period size: 24 Copynumber: 3.8 Consensus size: 24
9502262 GCTCTTTGTG
* * *
9502272 AGCTTCCCGTTAATGGCTC-TCCGC
1 AGCTTCCCGATAATGGCTCGT-TGA
* *
9502296 AGCTTCCTGATATTGGCTCGCTTGA
1 AGCTTCCCGATAATGGCTCG-TTGA
* * *
9502321 ACCTTCCCGATATTAGCTCGTATG-
1 AGCTTCCCGATAATGGCTCGT-TGA
*
9502345 AGCTTCCCGTTAATGGCTC
1 AGCTTCCCGATAATGGCTC
9502364 TCCGGAGCTT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
24 32 0.60
25 20 0.38
26 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.21, T:0.33
Consensus pattern (24 bp):
AGCTTCCCGATAATGGCTCGTTGA
Found at i:9503787 original size:8 final size:8
Alignment explanation
Indices: 9503776--9503805 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
9503766 AAGAAAATAA
*
9503776 ATATATGG
1 ATATATGT
9503784 ATATATGT
1 ATATATGT
9503792 ATATATGT
1 ATATATGT
9503800 ATATAT
1 ATATAT
9503806 TTAATTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (8 bp):
ATATATGT
Found at i:9504726 original size:20 final size:19
Alignment explanation
Indices: 9504701--9504805 Score: 79
Period size: 20 Copynumber: 5.4 Consensus size: 19
9504691 CTTGTTTACA
9504701 TTGATTTGATTCTCAATCTT
1 TTGATTTGATTCTCAATC-T
** * *
9504721 TTGATTTCTTTC-CATTACA
1 TTGATTTGATTCTCAAT-CT
9504740 TTGATTTGATTCTCAATCTT
1 TTGATTTGATTCTCAATC-T
** * *
9504760 TTGATTTCTTTC-CATTACA
1 TTGATTTGATTCTCAAT-CT
9504779 TTGATTTGATTCTCAATCCT
1 TTGATTTGATTCTCAAT-CT
9504799 TTGATTT
1 TTGATTT
9504806 CTTTCCATTA
Statistics
Matches: 63, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
19 27 0.43
20 36 0.57
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (19 bp):
TTGATTTGATTCTCAATCT
Found at i:9504750 original size:39 final size:39
Alignment explanation
Indices: 9504696--9504816 Score: 233
Period size: 39 Copynumber: 3.1 Consensus size: 39
9504686 AAAATCTTGT
9504696 TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
1 TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
9504735 TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
1 TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
*
9504774 TTACATTGATTTGATTCTCAATCCTTTGATTTCTTTCCA
1 TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
9504813 TTAC
1 TTAC
9504817 TGTTTTGCTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.21, C:0.19, G:0.07, T:0.53
Consensus pattern (39 bp):
TTACATTGATTTGATTCTCAATCTTTTGATTTCTTTCCA
Found at i:9508547 original size:7 final size:7
Alignment explanation
Indices: 9508535--9508570 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
9508525 TTCTTCCTCC
9508535 CCCCAAA
1 CCCCAAA
9508542 CCCC-AA
1 CCCCAAA
9508548 -CCCAAA
1 CCCCAAA
9508554 CCCC-AA
1 CCCCAAA
9508560 CCCCAAA
1 CCCCAAA
9508567 CCCC
1 CCCC
9508571 TCCTTTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
5 3 0.12
6 10 0.38
7 13 0.50
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (7 bp):
CCCCAAA
Found at i:9508553 original size:12 final size:13
Alignment explanation
Indices: 9508535--9508570 Score: 65
Period size: 12 Copynumber: 2.8 Consensus size: 13
9508525 TTCTTCCTCC
9508535 CCCCAAACCCCAA
1 CCCCAAACCCCAA
9508548 -CCCAAACCCCAA
1 CCCCAAACCCCAA
9508560 CCCCAAACCCC
1 CCCCAAACCCC
9508571 TCCTTTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (13 bp):
CCCCAAACCCCAA
Found at i:9514190 original size:19 final size:19
Alignment explanation
Indices: 9514099--9514191 Score: 68
Period size: 18 Copynumber: 4.8 Consensus size: 19
9514089 GTAGAACTAT
*
9514099 TTATAAAAAAAATA-AAAA
1 TTATAAAAAATATATAAAA
*
9514117 TGTA-AATAATATATTATCAAAA
1 T-TATAA-AAAATA-TAT-AAAA
*
9514139 TTATAAAAAA-ATAGAAAA
1 TTATAAAAAATATATAAAA
**
9514157 TTATAAAAACCATATAAAA
1 TTATAAAAAATATATAAAA
9514176 TT-TAAAAATATATATA
1 TTATAAAAA-ATATATA
9514192 CAATATTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
18 22 0.37
19 22 0.37
20 3 0.05
21 5 0.08
22 7 0.12
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (19 bp):
TTATAAAAAATATATAAAA
Found at i:9515457 original size:26 final size:26
Alignment explanation
Indices: 9515421--9515471 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
9515411 CTTTGTTGTC
9515421 AATTACCTCATATGTTTTCAAATATA
1 AATTACCTCATATGTTTTCAAATATA
9515447 AATTACCTCATATGTTTTCAAATAT
1 AATTACCTCATATGTTTTCAAATAT
9515472 CAAAGAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.04, T:0.43
Consensus pattern (26 bp):
AATTACCTCATATGTTTTCAAATATA
Found at i:9524966 original size:20 final size:20
Alignment explanation
Indices: 9524943--9524997 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
9524933 GATAAACCCA
9524943 TAGAAATTTTGGTATA-ACCT
1 TAGAAATTTTGGTA-AGACCT
* * *
9524963 TAGAAGTTTTGGCAAGACTT
1 TAGAAATTTTGGTAAGACCT
*
9524983 TAGCAATTTTGGTAA
1 TAGAAATTTTGGTAA
9524998 ATCTAAGATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (20 bp):
TAGAAATTTTGGTAAGACCT
Found at i:9525162 original size:40 final size:41
Alignment explanation
Indices: 9525077--9525164 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 41
9525067 TTTTTAAAAT
* * * * *
9525077 TTTTGATATAACCTTAAAAATTTTAGTAACACCTTTGGAGA
1 TTTTGATACAACATTAAAAATTTTAGTAACAACTTTAGACA
* *
9525118 -TTTGATACAACATTAAAAATTTTGGTAA-AACTTTATACA
1 TTTTGATACAACATTAAAAATTTTAGTAACAACTTTAGACA
9525157 TTTTGATA
1 TTTTGATA
9525165 TAACTTCATG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
39 7 0.18
40 32 0.82
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (41 bp):
TTTTGATACAACATTAAAAATTTTAGTAACAACTTTAGACA
Found at i:9530565 original size:18 final size:18
Alignment explanation
Indices: 9530542--9530593 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
9530532 GAAACTCTAT
*
9530542 ATCCTTTTGGGATTTTAA
1 ATCCTTTAGGGATTTTAA
9530560 ATCCTTTAGGGATTTTAA
1 ATCCTTTAGGGATTTTAA
*
9530578 ATCCTTTAGGAATTTT
1 ATCCTTTAGGGATTTT
9530594 CATATAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (18 bp):
ATCCTTTAGGGATTTTAA
Found at i:9534248 original size:43 final size:43
Alignment explanation
Indices: 9534163--9534309 Score: 181
Period size: 43 Copynumber: 3.4 Consensus size: 43
9534153 CGAGACTACA
* *
9534163 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTTCG
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGAGATTTCG
* * *
9534205 TGTAAGACCATGTCTGGGACATTGGCATGGATATGTGATTTCG
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGAGATTTCG
** * * *
9534248 TGTAAGACCATGGCTGGG-CTATTGGCATCGATACGAGATTACA
1 TGTAAGACCATATCTGGGAC-ATTGGCATCGATATGAGATTTCG
9534291 TGTAAGACCATATCTGGGA
1 TGTAAGACCATATCTGGGA
9534310 TATGACATTG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 20 0.22
43 69 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACATTGGCATCGATATGAGATTTCG
Found at i:9545858 original size:104 final size:104
Alignment explanation
Indices: 9545678--9545904 Score: 377
Period size: 104 Copynumber: 2.2 Consensus size: 104
9545668 TGTATATAAA
** * *
9545678 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
9545743 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9545782 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
9545846 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9545886 AGGGGTTGCTAAGTG-TGAT
1 AGGGGTTGCTAAGTGCTGAT
9545905 ATCCATTGTA
Statistics
Matches: 116, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 4 0.03
104 111 0.96
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:9545952 original size:71 final size:72
Alignment explanation
Indices: 9545820--9545976 Score: 244
Period size: 71 Copynumber: 2.2 Consensus size: 72
9545810 TCATTGGTGG
* * *
9545820 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9545885 GAGGGGT
66 GAGGGGT
***
9545892 TGCTAAGTGTGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9545956 GAGGGGT
66 GAGGGGT
9545963 TGCTAAGTGATGAT
1 TGCTAAGTG-TGAT
9545977 TCCCCGATTC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 45 0.58
72 33 0.42
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9553427 original size:104 final size:104
Alignment explanation
Indices: 9553247--9553473 Score: 377
Period size: 104 Copynumber: 2.2 Consensus size: 104
9553237 TGTATATAAA
** * *
9553247 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
9553312 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
9553351 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
9553415 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
9553455 AGGGGTTGCTAAGTG-TGAT
1 AGGGGTTGCTAAGTGCTGAT
9553474 ATCCATTGTA
Statistics
Matches: 116, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 4 0.03
104 111 0.96
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:9553521 original size:71 final size:72
Alignment explanation
Indices: 9553389--9553545 Score: 244
Period size: 71 Copynumber: 2.2 Consensus size: 72
9553379 TCATTGGTGG
* * *
9553389 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9553454 GAGGGGT
66 GAGGGGT
***
9553461 TGCTAAGTGTGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9553525 GAGGGGT
66 GAGGGGT
9553532 TGCTAAGTGATGAT
1 TGCTAAGTG-TGAT
9553546 TCCCCGATTC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 45 0.58
72 33 0.42
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGTGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9556310 original size:9 final size:10
Alignment explanation
Indices: 9556295--9556322 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
9556285 AACTTTTCCG
9556295 TATTTTTTAT
1 TATTTTTTAT
9556305 TATTTTTTAT
1 TATTTTTTAT
9556315 TATTTTTT
1 TATTTTTT
9556323 CCTTAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
TATTTTTTAT
Found at i:9558020 original size:20 final size:21
Alignment explanation
Indices: 9557977--9558025 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
9557967 AATAGAAATC
*
9557977 AATAGAATTGTTATTTTGGAA
1 AATAGAATTGTTATTTTAGAA
9557998 AATAGAA-T-TTATATTTAGAA
1 AATAGAATTGTTAT-TTTAGAA
9558018 AATA-AATT
1 AATAGAATT
9558026 CTCACTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.24
20 12 0.48
21 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (21 bp):
AATAGAATTGTTATTTTAGAA
Found at i:9564580 original size:20 final size:21
Alignment explanation
Indices: 9564542--9564582 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9564532 TTCCTCACAA
*
9564542 AATTTTCTCTTCTTTTTCTCT
1 AATTTTCTCTTCTTCTTCTCT
*
9564563 AATTTT-TCTTGTTCTTCTCT
1 AATTTTCTCTTCTTCTTCTCT
9564583 GCAACTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.10, C:0.22, G:0.02, T:0.66
Consensus pattern (21 bp):
AATTTTCTCTTCTTCTTCTCT
Found at i:9575337 original size:28 final size:28
Alignment explanation
Indices: 9575297--9575380 Score: 159
Period size: 28 Copynumber: 3.0 Consensus size: 28
9575287 TCTACTCAAA
9575297 AAGAGGAGAAAAAAGGGTGAATTTTGGT
1 AAGAGGAGAAAAAAGGGTGAATTTTGGT
*
9575325 AGGAGGAGAAAAAAGGGTGAATTTTGGT
1 AAGAGGAGAAAAAAGGGTGAATTTTGGT
9575353 AAGAGGAGAAAAAAGGGTGAATTTTGGT
1 AAGAGGAGAAAAAAGGGTGAATTTTGGT
9575381 TTTCTCCGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (28 bp):
AAGAGGAGAAAAAAGGGTGAATTTTGGT
Found at i:9576058 original size:3 final size:3
Alignment explanation
Indices: 9575988--9576043 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
9575978 GAATTTGATG
* * * **
9575988 TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TCA TTA GCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9576036 TTTA TTA T
1 -TTA TTA T
9576044 ATACCTATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:9576071 original size:17 final size:15
Alignment explanation
Indices: 9576033--9576071 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
9576023 AGCATTATTA
9576033 TTATTTATTATATAC
1 TTATTTATTATATAC
*
9576048 CTATTTATTATATTTAC
1 TTATTTATTATA--TAC
9576065 TTATTTA
1 TTATTTA
9576072 AAATTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 11 0.55
17 9 0.45
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATTTATTATATAC
Found at i:9577421 original size:10 final size:10
Alignment explanation
Indices: 9577406--9577430 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9577396 CAAACAAATG
9577406 ATTTTATGAA
1 ATTTTATGAA
9577416 ATTTTATGAA
1 ATTTTATGAA
9577426 ATTTT
1 ATTTT
9577431 TTTAAAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (10 bp):
ATTTTATGAA
Found at i:9578623 original size:24 final size:23
Alignment explanation
Indices: 9578591--9578637 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
9578581 AATGGAAAAT
* *
9578591 AAACAAAAAGAAAGAAAGTTAAA
1 AAACAAAAAGAAAAAAAATTAAA
9578614 AAACATAAAAGAAAAAAAATTAAA
1 AAACA-AAAAGAAAAAAAATTAAA
9578638 TTCCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.77, C:0.04, G:0.09, T:0.11
Consensus pattern (23 bp):
AAACAAAAAGAAAAAAAATTAAA
Found at i:9579210 original size:16 final size:16
Alignment explanation
Indices: 9579176--9579211 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
9579166 TGGTTCGCTA
* *
9579176 TAATGGAATAGATGTG
1 TAATGGAATAGAGGCG
9579192 TAATGGAATAGAGGCG
1 TAATGGAATAGAGGCG
9579208 TAAT
1 TAAT
9579212 AGTAATTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.31, T:0.28
Consensus pattern (16 bp):
TAATGGAATAGAGGCG
Found at i:9579257 original size:45 final size:44
Alignment explanation
Indices: 9579193--9579285 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
9579183 ATAGATGTGT
*
9579193 AATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGT-ATTC-ATGTGTTTGGTTGAATGA
*
9579238 AATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAATGA
1 AATGGAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAATGA
9579282 AATG
1 AATG
9579286 ATGTTATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.49
45 22 0.49
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAATGA
Found at i:9579559 original size:120 final size:118
Alignment explanation
Indices: 9579423--9579661 Score: 433
Period size: 120 Copynumber: 2.0 Consensus size: 118
9579413 TTAATCATAT
* *
9579423 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA-T
9579488 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-ATAA
9579543 TTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
1 TTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
*
9579608 ATTATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAATAA
9579661 T
1 T
9579662 ATTTTTATTT
Statistics
Matches: 116, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
118 5 0.04
119 50 0.43
120 61 0.53
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (118 bp):
TTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAATAA
Found at i:9579595 original size:59 final size:60
Alignment explanation
Indices: 9579415--9579597 Score: 185
Period size: 59 Copynumber: 3.0 Consensus size: 60
9579405 TAAATAATTT
* *
9579415 AATCATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAA
1 AATCATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAA
* * * * * ** * * *
9579475 AATTCTTAATATT-AAAT-ATTCTTATATGAATTTACTAAAATCATAATATATAATACT-ATAA
1 AA-TCATAAT-TTAAAATAATTATTAT-TAAATATAATTTAATAAAAATATATAAT-TTAATAA
*
9579536 AAT-ATAATTTAAAATAATTATTATTAAACATAATTTAATAAAAATATATAATTTAATAA
1 AATCATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAA
9579595 AAT
1 AAT
9579598 TCTTAATATA
Statistics
Matches: 93, Mismatches: 23, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
58 3 0.03
59 35 0.38
60 17 0.18
61 35 0.38
62 3 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (60 bp):
AATCATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAA
Found at i:9582450 original size:18 final size:18
Alignment explanation
Indices: 9582429--9582468 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9582419 AGATTTGGAA
9582429 AAGAAAGAAACGTAGGAG
1 AAGAAAGAAACGTAGGAG
*
9582447 AAGAAGGAAACGTAGGAG
1 AAGAAAGAAACGTAGGAG
9582465 AAGA
1 AAGA
9582469 TGCCGAGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.05, G:0.35, T:0.05
Consensus pattern (18 bp):
AAGAAAGAAACGTAGGAG
Found at i:9586713 original size:2 final size:2
Alignment explanation
Indices: 9586706--9586750 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
9586696 CACAATCTAA
9586706 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9586748 TC T
1 TC T
9586751 TATGGTTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:9592019 original size:22 final size:22
Alignment explanation
Indices: 9591983--9592042 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
9591973 GCGAGCTTAT
* *
9591983 ATGATTATGTGTTATGTGAGCC
1 ATGAATATATGTTATGTGAGCC
* *
9592005 ATGTATTTATGTTATGTGAGCC
1 ATGAATATATGTTATGTGAGCC
9592027 ATGAATATATGTTATG
1 ATGAATATATGTTATG
9592043 CAAACCCTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (22 bp):
ATGAATATATGTTATGTGAGCC
Found at i:9592114 original size:33 final size:33
Alignment explanation
Indices: 9592045--9592120 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
9592035 ATGTTATGCA
* * *
9592045 AACCCTAGGATTATGTGAGACTATATGTATATG
1 AACCCTAGGATTATGCGAGACTATATGCATACG
* *
9592078 AACCCTAGGATTATGCGA-ACCTTTATGCATCCG
1 AACCCTAGGATTATGCGAGA-CTATATGCATACG
9592111 AACCCTAGGA
1 AACCCTAGGA
9592121 ACATTCAAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (33 bp):
AACCCTAGGATTATGCGAGACTATATGCATACG
Found at i:9592160 original size:29 final size:28
Alignment explanation
Indices: 9592109--9592370 Score: 148
Period size: 29 Copynumber: 9.0 Consensus size: 28
9592099 TTTATGCATC
* *
9592109 CGAACCCTAGGAACATTCAAGCCTATATG
1 CGAACCCTAGGAA-ATGCGAGCCTATATG
*
9592138 CGAACCCTAGGTAAATGTGAGCCTATATG
1 CGAACCCTAGG-AAATGCGAGCCTATATG
* * ** *
9592167 CGAACCTTAGGAACTTATGAGCCTGTATG
1 CGAACCCTAGGAA-ATGCGAGCCTATATG
*
9592196 CGAACCCTA-GAAACTTGCGAGCCTGTATG
1 CGAACCCTAGGAAA--TGCGAGCCTATATG
* * * *
9592225 CAAACCCTAGGTACACGCAAGCCTATATG
1 CGAACCCTAGG-AAATGCGAGCCTATATG
* * * *
9592254 CGAACCTTAGGAACTTGCGAGCCTGTATT
1 CGAACCCTAGGAA-ATGCGAGCCTATATG
* * * * * *
9592283 TGAGCCCCAGGTACATGTGAGCTTATATG
1 CGAACCCTAGG-AAATGCGAGCCTATATG
* * * **
9592312 CAAACCTTAGGAACCTGCGAGTTTATATG
1 CGAACCCTAGGAA-ATGCGAGCCTATATG
** *
9592341 CGAACCCTAGGTGCATGTGAGCCTATATG
1 CGAACCCTAGG-AAATGCGAGCCTATATG
9592370 C
1 C
9592371 CATGCGAACC
Statistics
Matches: 172, Mismatches: 51, Indels: 20
0.71 0.21 0.08
Matches are distributed among these distances:
28 7 0.04
29 159 0.92
30 4 0.02
31 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (28 bp):
CGAACCCTAGGAAATGCGAGCCTATATG
Found at i:9592231 original size:87 final size:87
Alignment explanation
Indices: 9592109--9592281 Score: 240
Period size: 87 Copynumber: 2.0 Consensus size: 87
9592099 TTTATGCATC
* * * **
9592109 CGAACCCTAGGAACATTCAAGCCTATATGCGAACCCTAGGTAAATGTGAGCCTATATGCGAACCT
1 CGAACCCTAGAAACATTCAAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACCT
*
9592174 TAGGAACTTATGAGCCTGTATG
66 TAGGAACTTACGAGCCTGTATG
* * *
9592196 CGAACCCTAGAAAC-TTGCGAGCCTGTATGCAAACCCTAGGTACACGCAAGCCTATATGCGAACC
1 CGAACCCTAGAAACATT-CAAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACC
*
9592260 TTAGGAACTTGCGAGCCTGTAT
65 TTAGGAACTTACGAGCCTGTAT
9592282 TTGAGCCCCA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
86 2 0.03
87 73 0.97
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (87 bp):
CGAACCCTAGAAACATTCAAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACCT
TAGGAACTTACGAGCCTGTATG
Found at i:9592278 original size:58 final size:58
Alignment explanation
Indices: 9592109--9592370 Score: 231
Period size: 58 Copynumber: 4.5 Consensus size: 58
9592099 TTTATGCATC
* * *
9592109 CGAACCCTAGGAACAT-TCAAGCCTATATGCGAACCCTAGGTAA-ATGTGAGCCTATATG
1 CGAACCCTAGGTACATGT-AAGCCTATATGCGAACCCTAGG-AACTTGCGAGCCTATATG
* * * * * * * *
9592167 CGAACCTTAGGAACTTATGAGCCTGTATGCGAACCCTAGAAACTTGCGAGCCTGTATG
1 CGAACCCTAGGTACATGTAAGCCTATATGCGAACCCTAGGAACTTGCGAGCCTATATG
* * * * * *
9592225 CAAACCCTAGGTACACGCAAGCCTATATGCGAACCTTAGGAACTTGCGAGCCTGTATT
1 CGAACCCTAGGTACATGTAAGCCTATATGCGAACCCTAGGAACTTGCGAGCCTATATG
* * * * * * * * **
9592283 TGAGCCCCAGGTACATGTGAGCTTATATGCAAACCTTAGGAACCTGCGAGTTTATATG
1 CGAACCCTAGGTACATGTAAGCCTATATGCGAACCCTAGGAACTTGCGAGCCTATATG
* *
9592341 CGAACCCTAGGTGCATGTGAGCCTATATGC
1 CGAACCCTAGGTACATGTAAGCCTATATGC
9592371 CATGCGAACC
Statistics
Matches: 163, Mismatches: 39, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
57 2 0.01
58 160 0.98
59 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (58 bp):
CGAACCCTAGGTACATGTAAGCCTATATGCGAACCCTAGGAACTTGCGAGCCTATATG
Found at i:9592312 original size:87 final size:87
Alignment explanation
Indices: 9592109--9592322 Score: 230
Period size: 87 Copynumber: 2.5 Consensus size: 87
9592099 TTTATGCATC
* * * * * * **
9592109 CGAACCCTAGGAACATTCAAGCCTATATGCGAACCCTAGGTAAATGTGAGCCTATATGCGAACCT
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACCT
*
9592174 TAGGAACTTATGAGCCTGTATG
66 TAGGAACTTACGAGCCTGTATG
* * * *
9592196 CGAACCCTAGAAACTTGCGAGCCTGTATGCAAACCCTAGGTACACGCAAGCCTATATGCGAACCT
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACCT
* *
9592261 TAGGAACTTGCGAGCCTGTATT
66 TAGGAACTTACGAGCCTGTATG
* * ** * * *
9592283 TGAGCCCCAGGTACATGTGAGCTTATATGCAAACCTTAGG
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGG
9592323 AACCTGCGAG
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (87 bp):
CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGTAAACGCAAGCCTATATGCGAACCT
TAGGAACTTACGAGCCTGTATG
Found at i:9592339 original size:87 final size:87
Alignment explanation
Indices: 9592109--9592351 Score: 220
Period size: 87 Copynumber: 2.8 Consensus size: 87
9592099 TTTATGCATC
* * * * * * **
9592109 CGAACCCTAGGAACATTCAAGCCTATATGCGAACCCTAGGTAA-ATGTGAGCCTATATGCGAACC
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGG-AACACGCAAGCCTATATGCGAACC
*
9592173 TTAGGAACTTATGAGCCTGTATG
65 TTAGGAACTTACGAGCCTGTATG
* * * *
9592196 CGAACCCTAGAAACTTGCGAGCCTGTATGCAAACCCTAGGTACACGCAAGCCTATATGCGAACCT
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGAACACGCAAGCCTATATGCGAACCT
* *
9592261 TAGGAACTTGCGAGCCTGTATT
66 TAGGAACTTACGAGCCTGTATG
* * ** * * * * **
9592283 TGAGCCCCAGGTACATGTGAGCTTATATGCAAACCTTAGGAAC-CTGCGAGTTTATATGCGAACC
1 CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGAACAC-GCAAGCCTATATGCGAACC
*
9592347 CTAGG
65 TTAGG
9592352 TGCATGTGAG
Statistics
Matches: 126, Mismatches: 28, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
86 2 0.02
87 124 0.98
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (87 bp):
CGAACCCCAGAAACATGCGAGCCTATATGCAAACCCTAGGAACACGCAAGCCTATATGCGAACCT
TAGGAACTTACGAGCCTGTATG
Found at i:9592402 original size:34 final size:34
Alignment explanation
Indices: 9592338--9592403 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
9592328 GCGAGTTTAT
* ** *
9592338 ATGCGAACCCTAGGTGCATGTGAGCCTATATGCC
1 ATGCGAACCCTAAGAACATGCGAGCCTATATGCC
*
9592372 ATGCGAACCCTAAGAACATGCGAGCTTATATG
1 ATGCGAACCCTAAGAACATGCGAGCCTATATG
9592404 ATCATGTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (34 bp):
ATGCGAACCCTAAGAACATGCGAGCCTATATGCC
Found at i:9595046 original size:106 final size:106
Alignment explanation
Indices: 9594859--9595050 Score: 330
Period size: 106 Copynumber: 1.8 Consensus size: 106
9594849 AGATTTAAGG
* * *
9594859 GGATATTTGGCTATTTAGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCATGTTCTCTCGAA
1 GGATATTCGACTATTTAGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCATGTTCTCTCGAA
*
9594924 TTTCCAAACGTAAAATATTGCCTCACTTTGAAATTTCGAAA
66 TTTCCAAACGCAAAATATTGCCTCACTTTGAAATTTCGAAA
*
9594965 GGATATTCGACTATTTGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCATGTTCTCTCGAA
1 GGATATTCGACTATTTAGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCATGTTCTCTCGAA
*
9595030 TTTCCAAACGCGAAATATTGC
66 TTTCCAAACGCAAAATATTGC
9595051 TTTATTTGAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 80 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (106 bp):
GGATATTCGACTATTTAGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCATGTTCTCTCGAA
TTTCCAAACGCAAAATATTGCCTCACTTTGAAATTTCGAAA
Found at i:9599186 original size:43 final size:43
Alignment explanation
Indices: 9599012--9599400 Score: 502
Period size: 43 Copynumber: 9.1 Consensus size: 43
9599002 TTTTTTTTAC
*
9599012 AACGCCCCTATAGACCATGGTCTTTAGCGGCGCTTAA--ATAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCA-AAA
* *
9599054 AACGCCACTATAGACTATGGTCTTTACCGGCGCTTAA--AATAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAA-AA
* * * * *
9599096 AACGCCATTATAGACCGT-GTGTTTAGCGGCACTT-ACCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* *
9599137 AACGCCACTATAGACAATGGTCTTTAGCGGCGCTTAACCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* *
9599180 AACGCCACTATAGACCGTGGTCTTTAGCGGCGCTTAACCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* * * * *
9599223 AACACCACTATAGACCGTGGTCTTTAGCGGCGTTTAGGCTAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* *
9599266 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGCTAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* * *
9599309 AATGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGGCGAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
* *
9599352 AACGCCACTATAGACCATGGTCTTTAGTGGCGCTTATGCAAAA
1 AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
9599395 AACGCC
1 AACGCC
9599401 GCTAATTTTG
Statistics
Matches: 312, Mismatches: 30, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
40 1 0.00
41 31 0.10
42 68 0.22
43 212 0.68
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (43 bp):
AACGCCACTATAGACCATGGTCTTTAGCGGCGCTTAAGCAAAA
Found at i:9599771 original size:21 final size:21
Alignment explanation
Indices: 9599705--9599774 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
9599695 TTTAAGCTGT
9599705 TCTGCTTCCCTCGCTGCAGCC
1 TCTGCTTCCCTCGCTGCAGCC
* **
9599726 TCTACTTCCCTCGCTTTAGCC
1 TCTGCTTCCCTCGCTGCAGCC
* * *
9599747 TCTGCTTCTCTCGCTGCCGCA
1 TCTGCTTCCCTCGCTGCAGCC
9599768 TCTGCTT
1 TCTGCTT
9599775 TAAGTTGCTG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.06, C:0.43, G:0.16, T:0.36
Consensus pattern (21 bp):
TCTGCTTCCCTCGCTGCAGCC
Found at i:9599851 original size:87 final size:87
Alignment explanation
Indices: 9599724--9599927 Score: 268
Period size: 87 Copynumber: 2.3 Consensus size: 87
9599714 CTCGCTGCAG
* * * **
9599724 CCTCTACTTCCCTCGCT-TTAGCCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGTTGCTGTTG
1 CCTCAACTTCTCTCGCTGTT-GCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGTTGCTGCCG
9599788 GAGTTCTTCATA-CTTTCGTTGAA
65 GAGTTCTTCATATCTTT-GTTGAA
* * *
9599811 CCTCAGCTTCTCTCGCTGTTGCCTCTGCTTCTCTCACTGCCGTATCTGCTTTAAGTTGTTGCCGG
1 CCTCAACTTCTCTCGCTGTTGCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGTTGCTGCCGG
*
9599876 AGTTCTTCATATCTTTTTTGAA
66 AGTTCTTCATATCTTTGTTGAA
* * *
9599898 CCTCAACTTCTCTCGATGTTACCTCCGCTT
1 CCTCAACTTCTCTCGCTGTTGCCTCTGCTT
9599928 TAAGTTGTGT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
87 96 0.94
88 6 0.06
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (87 bp):
CCTCAACTTCTCTCGCTGTTGCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGTTGCTGCCGG
AGTTCTTCATATCTTTGTTGAA
Found at i:9605569 original size:31 final size:31
Alignment explanation
Indices: 9605533--9606192 Score: 560
Period size: 31 Copynumber: 20.3 Consensus size: 31
9605523 AGTTATGTCG
9605533 TATTAATGTAAGTTATGTAATTTATGTATAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
*
9605564 TATTAATGTAAGTTATGTAATTTATGTGTAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9605595 TATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAA
1 TATTAATGTAAGTTATGTAA----T---TTATGTATAA
* * *
9605633 TATTAATTAATTAAGTTATGTAATTTAAGT-TATG
1 TATTAA-T--GTAAGTTATGTAATTTATGTATA-A
*
9605667 TATTAATGTAAGTTATGTAATTTATGTGTAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9605698 TATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAA
1 TATTAATGTAAGTTATGTAA----T---TTATGTATAA
* * *
9605736 TATTAATTAATTAAGTTATGTAATTTAAGT-TATG
1 TATTAA-T--GTAAGTTATGTAATTTATGTATA-A
*
9605770 TATTAATGTAAGTTATGTAATTTATGTGTAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
* * *
9605801 TATTAATGTAAGTTATCT-A--TA-ATATTA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9605828 -ATTAAT-TAAGTTATGTAATTTATGTATAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
* *
9605857 TATTAATGTAAGTCATGTAATTTATGTGTAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9605888 TATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATA
1 TATTAATGTAAGTTATGTAA----T---TTATGTAT-A-A
* *
9605928 TTACTTAAT-TAAGTTATGTAATTTAAGT-TATG
1 -TA-TTAATGTAAGTTATGTAATTTATGTATA-A
* *
9605960 TATTAATGTAAGTTATGTTATTTATGTGTAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
*
9605991 TATTAATCTAAGTTATGTAAGTTGTAAGTTATGTATAA
1 TATTAATGTAAGTTATGTAA----T---TTATGTATAA
* * *
9606029 TATTAATTAATTAAGTTAGGTAAGTTATGTATAA
1 TATTAA-T--GTAAGTTATGTAATTTATGTATAA
*
9606063 TATTAATTAATTAAGTTATGTAATTTATGTATAA
1 TATTAA-T--GTAAGTTATGTAATTTATGTATAA
9606097 TATTAATGTAAGTTATGTAATTTATGTATAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
* *
9606128 TATTAATGTAAGTTATGT-A--TA-ATATTA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9606155 -ATTAAT-TAAGTTATGTAATTTATGTATAA
1 TATTAATGTAAGTTATGTAATTTATGTATAA
9606184 TATTAATGT
1 TATTAATGT
9606193 GGCTTCTACG
Statistics
Matches: 526, Mismatches: 44, Indels: 118
0.76 0.06 0.17
Matches are distributed among these distances:
25 19 0.04
26 14 0.03
27 7 0.01
28 8 0.02
29 8 0.02
30 19 0.04
31 242 0.46
32 8 0.02
33 8 0.02
34 75 0.14
35 4 0.01
37 3 0.01
38 52 0.10
39 4 0.01
40 1 0.00
41 49 0.09
42 5 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.48
Consensus pattern (31 bp):
TATTAATGTAAGTTATGTAATTTATGTATAA
Found at i:9605648 original size:103 final size:103
Alignment explanation
Indices: 9605534--9606146 Score: 615
Period size: 103 Copynumber: 5.8 Consensus size: 103
9605524 GTTATGTCGT
9605534 ATTAATGTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTGTAATATT
1 ATTAATGTAAGTTATGTAATTTATGT-TAATATTAATGTAAGTTATGTAATTTATGTGTAATATT
9605599 AATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTA
65 AATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTA
* *
9605638 ATTAAT-TAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATT
1 ATTAATGTAAGTTATGTAATTTATGTTA-ATATTAATGTAAGTTATGTAATTTATGTGTAATATT
9605702 AATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTA
65 AATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTA
* *
9605741 ATTAAT-TAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATT
1 ATTAATGTAAGTTATGTAATTTATGTTA-ATATTAATGTAAGTTATGTAATTTATGTGTAATATT
* * * * *
9605805 AATGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTATGTATAA
65 AATGTAAG---T-TAT-GTA--AGTT--GTAAGTTATGT-A--TA-ATATTA
* *
9605857 TATTAATGTAAGTCATGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGT-T-AT
1 -ATTAATGTAAGTTATGTAATTTATGT-TAATATTAATGTAAGTTATGTAA-TT-TATGTGTAAT
* * * * * * *
9605920 GTATAATATTACTTAAT-TAAGTTATGTAATTTAAGT-T-AT-GT-
62 AT-TAATGTAAGTT-ATGTAAG-T-TGTAAGTTATGTATAATATTA
* * * *
9605961 ATTAATGTAAGTTATGTTATTTATGTGTAATATTAATCTAAGTTATGTAAGTTGTAAGT-T-ATG
1 ATTAATGTAAGTTATGTAATTTATGT-TAATATTAATGTAAGTTATGTAA-TT-TATGTGTAATA
*
9606024 TATAATATTAA-TTAAT-TAAGTTAGGTAAGTTATGTATAATATTA
63 T-TAAT-GTAAGTT-ATGTAAGTT--GTAAGTTATGTATAATATTA
*
9606068 ATTAAT-TAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTATAATATT
1 ATTAATGTAAGTTATGTAATTTATGT-TAATATTAATGTAAGTTATGTAATTTATGTGTAATATT
9606132 AATGTAAGTTATGTA
65 AATGTAAGTTATGTA
9606147 TAATATTAAT
Statistics
Matches: 439, Mismatches: 36, Indels: 67
0.81 0.07 0.12
Matches are distributed among these distances:
101 1 0.00
102 3 0.01
103 248 0.56
104 18 0.04
105 13 0.03
106 46 0.10
107 9 0.02
108 3 0.01
110 3 0.01
112 19 0.04
113 2 0.00
114 3 0.01
115 3 0.01
116 7 0.02
117 6 0.01
118 40 0.09
119 11 0.03
120 4 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (103 bp):
ATTAATGTAAGTTATGTAATTTATGTTAATATTAATGTAAGTTATGTAATTTATGTGTAATATTA
ATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTA
Found at i:9605825 original size:87 final size:87
Alignment explanation
Indices: 9605720--9605903 Score: 316
Period size: 87 Copynumber: 2.1 Consensus size: 87
9605710 TTATGTAAGT
* * *
9605720 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT-TATGTATTAATGTAAGTT
1 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATA-ATATTAATGTAAGTC
9605784 ATGTAATTTATGTGTAATATTAA
65 ATGTAATTTATGTGTAATATTAA
*
9605807 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTCA
1 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATAATATTAATGTAAGTCA
9605872 TGTAATTTATGTGTAATATTAA
66 TGTAATTTATGTGTAATATTAA
9605894 TGTAAGTTAT
1 TGTAAGTTAT
9605904 GTAAGTTGTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
87 90 0.98
88 2 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (87 bp):
TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATAATATTAATGTAAGTCA
TGTAATTTATGTGTAATATTAA
Found at i:9605842 original size:190 final size:190
Alignment explanation
Indices: 9605617--9606006 Score: 701
Period size: 190 Copynumber: 2.1 Consensus size: 190
9605607 TTATGTAAGT
* * *
9605617 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT-TATGTATTAATGTAAGTT
1 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATA-ATATTAATGTAAGTC
9605681 ATGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAA
65 ATGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAA
9605746 TTAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAA
130 TTAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAA
*
9605807 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTCA
1 TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATAATATTAATGTAAGTCA
*
9605872 TGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTACTTAAT
66 TGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAAT
*
9605937 TAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTTATTTATGTGTAATATTAA
131 TAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAA
*
9605997 TCTAAGTTAT
1 TGTAAGTTAT
9606007 GTAAGTTGTA
Statistics
Matches: 192, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
190 190 0.99
191 2 0.01
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (190 bp):
TGTAAGTTATCTATAATATTAATTAATTAAGTTATGTAATTTAAGTATAATATTAATGTAAGTCA
TGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAAT
TAAGTTATGTAATTTAAGTTATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAA
Found at i:9606020 original size:293 final size:292
Alignment explanation
Indices: 9605533--9606192 Score: 1044
Period size: 293 Copynumber: 2.2 Consensus size: 292
9605523 AGTTATGTCG
9605533 TATTAATGTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTGTAATAT
1 TATTAAT-TAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTGTAATAT
9605598 TAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT
65 TAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT
*
9605663 TATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAATGTAAGTTATGTAAGTTGTAAGTT
130 TATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAATCTAAGTTATGTAAGTTGTAAGTT
* *
9605728 ATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT-T-AT-GT-ATTAATGTAAGTTATGTA
195 ATGTATAATATTAATTAATTAAGTTAGGTAAGTTAAGTATAATAGTAATTAAT-TAAGTTATGTA
*
9605789 ATTTATGTGTAATATTAATGTAAGTTATCTATAATAT
259 ATTTATGTATAATATTAATGTAAGTTA--TATAAT-T
*
9605826 TAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTCATGTAATTTATGTGTAATAT
1 T-ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTGTAATAT
*
9605891 TAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTACTTAATTAAGTTATGTAATTTAAGT
65 TAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGT
*
9605956 TATGTATTAATGTAAGTTATGTTATTTATGTGTAATATTAATCTAAGTTATGTAAGTTGTAAGTT
130 TATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAATCTAAGTTATGTAAGTTGTAAGTT
* *
9606021 ATGTATAATATTAATTAATTAAGTTAGGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAA
195 ATGTATAATATTAATTAATTAAGTTAGGTAAGTTAAGTATAATAGTAATTAATTAAGTTATGTAA
*
9606086 TTTATGTATAATATTAATGTAAGTTATGTAATT
260 TTTATGTATAATATTAATGTAAGTTATATAATT
* * * *
9606119 TATGT-A-TAATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTAT
1 TAT-TAATTAA-GTT-ATGTAATTTATGTATAATATTAA-T--GTAAGTTATGTAATTTATGTGT
9606182 AATATTAATGT
60 AATATTAATGT
9606193 GGCTTCTACG
Statistics
Matches: 341, Mismatches: 15, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
291 3 0.01
292 5 0.01
293 244 0.72
294 13 0.04
295 2 0.01
296 68 0.20
297 6 0.02
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.48
Consensus pattern (292 bp):
TATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTGTAATATT
AATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTAAGTT
ATGTATTAATGTAAGTTATGTAATTTATGTGTAATATTAATCTAAGTTATGTAAGTTGTAAGTTA
TGTATAATATTAATTAATTAAGTTAGGTAAGTTAAGTATAATAGTAATTAATTAAGTTATGTAAT
TTATGTATAATATTAATGTAAGTTATATAATT
Found at i:9606136 original size:22 final size:22
Alignment explanation
Indices: 9606111--9606161 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
9606101 AATGTAAGTT
9606111 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
9606133 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
9606155 AT-TAATT
1 ATGTAATT
9606162 AAGTTATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:9606165 original size:56 final size:53
Alignment explanation
Indices: 9606080--9606192 Score: 181
Period size: 56 Copynumber: 2.1 Consensus size: 53
9606070 TAATTAAGTT
*
9606080 ATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAATGTAAGTTATGTAATTTATGTATAATATTA
*
9606133 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAA-T--GTAAGTTATGTAATTTATGTATAATATTA
9606189 ATGT
1 ATGT
9606193 GGCTTCTACG
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
53 22 0.40
54 1 0.02
56 32 0.58
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.49
Consensus pattern (53 bp):
ATGTAAGTTATGTATAATATTAATGTAAGTTATGTAATTTATGTATAATATTA
Found at i:9606723 original size:47 final size:47
Alignment explanation
Indices: 9606669--9606762 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
9606659 AACGCTAGAC
*
9606669 CACCTCCACATGCATTAATCAAATCCTAAATTATATTTTAGAAGGGG
1 CACCTCCACATGCATTAATCAAACCCTAAATTATATTTTAGAAGGGG
* * *
9606716 CACCTCCATATGCATTAATCAAGCCCTAAATTATCTTTTAGAAGGGG
1 CACCTCCACATGCATTAATCAAACCCTAAATTATATTTTAGAAGGGG
9606763 AATCGAAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (47 bp):
CACCTCCACATGCATTAATCAAACCCTAAATTATATTTTAGAAGGGG
Found at i:9610534 original size:21 final size:22
Alignment explanation
Indices: 9610492--9610540 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
9610482 TTTAAAAAAT
9610492 AAATAACATATAAAACAATTTA
1 AAATAACATATAAAACAATTTA
* * *
9610514 AAATAATATGTAAAA-AGTTTA
1 AAATAACATATAAAACAATTTA
9610535 AAATAA
1 AAATAA
9610541 ATTATATGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATAACATATAAAACAATTTA
Found at i:9612018 original size:25 final size:26
Alignment explanation
Indices: 9611970--9612036 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
9611960 CTGCTAAAAC
* *
9611970 TTTTTTAGTTTGTGGGCTATTA-GGT
1 TTTTTTAATTTTTGGGCTATTAGGGT
9611995 TTTTTTAATTTTTGGGCT-TGTAGGGT
1 TTTTTTAATTTTTGGGCTAT-TAGGGT
**
9612021 TAGATTTAATTTTTGG
1 T-TTTTTAATTTTTGG
9612037 CTGGCATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 18 0.51
26 4 0.11
27 12 0.34
ACGTcount: A:0.15, C:0.03, G:0.25, T:0.57
Consensus pattern (26 bp):
TTTTTTAATTTTTGGGCTATTAGGGT
Found at i:9613223 original size:16 final size:15
Alignment explanation
Indices: 9613202--9613241 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
9613192 AATATTGTGT
9613202 AAATAAAAGGAAAAG
1 AAATAAAAGGAAAAG
**
9613217 AAAATAAAAATAAAAG
1 -AAATAAAAGGAAAAG
9613233 AAATAAAAG
1 AAATAAAAG
9613242 ATGAAGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (15 bp):
AAATAAAAGGAAAAG
Found at i:9615744 original size:16 final size:16
Alignment explanation
Indices: 9615710--9615762 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
9615700 ATGGCATTAG
9615710 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
9615726 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* * *
9615742 TCATACCATACTCTAT
1 TCATGCAATACTCAAT
9615758 TCATG
1 TCATG
9615763 AGTATATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 5 0.17
16 20 0.69
17 4 0.14
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:9616074 original size:41 final size:40
Alignment explanation
Indices: 9615952--9616087 Score: 125
Period size: 41 Copynumber: 3.5 Consensus size: 40
9615942 ACTAGTTTGG
* * * * * *
9615952 CACCCAGTGCCTTATCGGATAATTCAAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
* * * * *
9615992 CACCCATTGTCTCATCGACTAAACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
9616029 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAA-TAATCCGAAGTAGTAAATTGA
* *
9616070 CACCCAATGTCTCATCGA
1 CACCCAGTGCCTCATCGA
9616088 CTCGAAGTCG
Statistics
Matches: 74, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 23 0.31
38 6 0.08
39 2 0.03
40 18 0.24
41 25 0.34
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
Found at i:9616279 original size:24 final size:24
Alignment explanation
Indices: 9616234--9616280 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9616224 TATATATACC
9616234 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
9616258 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
9616281 CCATTTCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:9616997 original size:19 final size:19
Alignment explanation
Indices: 9616956--9616997 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9616946 AGGCCGTGGC
*
9616956 TTTCTTTCTTCTTTCTCTT
1 TTTCTTTCTTCTTTCTCTG
9616975 TTTCTTTCTTTCTTTC-CTG
1 TTTCTTTC-TTCTTTCTCTG
9616994 TTTC
1 TTTC
9616998 GTTTTGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCTTTCTTCTTTCTCTG
Found at i:9616997 original size:27 final size:26
Alignment explanation
Indices: 9616955--9617015 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
9616945 AAGGCCGTGG
* *
9616955 CTTTCTTTCTTCTTTCTCTTTTTCTTT
1 CTTTCTTTCCTCTTTC-CTTTTGCTTT
* *
9616982 CTTTCTTTCCTGTTTCGTTTTGCTTT
1 CTTTCTTTCCTCTTTCCTTTTGCTTT
*
9617008 GTTTCTTT
1 CTTTCTTT
9617016 TTCTATTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.00, C:0.23, G:0.07, T:0.70
Consensus pattern (26 bp):
CTTTCTTTCCTCTTTCCTTTTGCTTT
Found at i:9620438 original size:15 final size:16
Alignment explanation
Indices: 9620411--9620440 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9620401 GAAAAGATAA
9620411 TAATTTAAATATAAAC
1 TAATTTAAATATAAAC
9620427 TAATTT-AATATAAA
1 TAATTTAAATATAAA
9620441 ATTTAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATTTAAATATAAAC
Found at i:9622038 original size:20 final size:21
Alignment explanation
Indices: 9621988--9622041 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
9621978 TTTGTATTTC
*
9621988 CTCAT-AACTTTTGGCATTCT
1 CTCATAAATTTTTGGCATTCT
** *
9622008 CTCATTTATTTTTGGTATTCT
1 CTCATAAATTTTTGGCATTCT
9622029 CTCA-AAATTTTTG
1 CTCATAAATTTTTG
9622042 CACAATAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.20, C:0.19, G:0.09, T:0.52
Consensus pattern (21 bp):
CTCATAAATTTTTGGCATTCT
Found at i:9622274 original size:20 final size:20
Alignment explanation
Indices: 9622250--9622404 Score: 96
Period size: 20 Copynumber: 7.7 Consensus size: 20
9622240 AAAGCATATA
*
9622250 AAAAAATTATGAGGGAGTACC
1 AAAAAA-TATGAGGGAATACC
** *
9622271 AAAATTTATGAGAGAATACC
1 AAAAAATATGAGGGAATACC
* ** * *
9622291 AAAAAACACAAGGGAGTACA
1 AAAAAATATGAGGGAATACC
* * *
9622311 AAAAAACATAAGAGAATACC
1 AAAAAATATGAGGGAATACC
* * **
9622331 AAAAATTATGAGGAAATAAA
1 AAAAAATATGAGGGAATACC
* *
9622351 AAAAAATTATGAGGGATTACT
1 AAAAAA-TATGAGGGAATACC
* *
9622372 AAAAAACATGATGGG-GTACC
1 AAAAAATATGA-GGGAATACC
9622392 AAAAAATATGAGG
1 AAAAAATATGAGG
9622405 AATTATAAAA
Statistics
Matches: 100, Mismatches: 32, Indels: 6
0.72 0.23 0.04
Matches are distributed among these distances:
19 2 0.02
20 75 0.75
21 23 0.23
ACGTcount: A:0.55, C:0.09, G:0.19, T:0.17
Consensus pattern (20 bp):
AAAAAATATGAGGGAATACC
Found at i:9622366 original size:61 final size:62
Alignment explanation
Indices: 9622301--9622419 Score: 152
Period size: 61 Copynumber: 1.9 Consensus size: 62
9622291 AAAAAACACA
*
9622301 AGGGAGTACAAAAAAACAT-AAGAGAATACCAAAAATTATGAGGAA-ATAAAAAAAAATTATG
1 AGGGAGTACAAAAAAACATGAAG-GAATACCAAAAAATATGAGGAATATAAAAAAAAATTATG
* * * **
9622362 AGGGATTACTAAAAAACATGATGGGGTACCAAAAAATATGAGGAATTATAAAAAAAAA
1 AGGGAGTACAAAAAAACATGAAGGAATACCAAAAAATATGAGGAA-TATAAAAAAAAA
9622420 GAGGAGAAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
61 36 0.73
62 2 0.04
63 11 0.22
ACGTcount: A:0.58, C:0.07, G:0.18, T:0.18
Consensus pattern (62 bp):
AGGGAGTACAAAAAAACATGAAGGAATACCAAAAAATATGAGGAATATAAAAAAAAATTATG
Found at i:9622375 original size:21 final size:20
Alignment explanation
Indices: 9622331--9622416 Score: 59
Period size: 20 Copynumber: 4.3 Consensus size: 20
9622321 AGAGAATACC
* * **
9622331 AAAAATTATGAGGAAATAAA
1 AAAAAATATGAGGAATTACT
*
9622351 AAAAAATTATGAGGGATTACT
1 AAAAAA-TATGAGGAATTACT
* ** *
9622372 AAAAAACATGATGG-GGTACC
1 AAAAAATATGA-GGAATTACT
9622392 AAAAAATATGAGGAATTA-T
1 AAAAAATATGAGGAATTACT
9622411 AAAAAA
1 AAAAAA
9622417 AAAGAGGAGA
Statistics
Matches: 50, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
19 8 0.16
20 24 0.48
21 18 0.36
ACGTcount: A:0.57, C:0.05, G:0.17, T:0.21
Consensus pattern (20 bp):
AAAAAATATGAGGAATTACT
Found at i:9628950 original size:8 final size:8
Alignment explanation
Indices: 9628929--9628960 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
9628919 AATTTAAAGT
9628929 TATTATATA
1 TATTATA-A
9628938 TATTATAA
1 TATTATAA
9628946 TATTATAA
1 TATTATAA
9628954 TATTATA
1 TATTATA
9628961 TCTTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TATTATAA
Found at i:9629021 original size:13 final size:13
Alignment explanation
Indices: 9629003--9629044 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
9628993 TATATTATAT
9629003 AATAAAAGAAAGA
1 AATAAAAGAAAGA
9629016 AATAAAAGAAAAGGA
1 AATAAAAG-AAA-GA
9629031 AAT-AAAGAAAGA
1 AATAAAAGAAAGA
9629043 AA
1 AA
9629045 CAAAGAAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 4 0.15
13 11 0.41
14 7 0.26
15 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (13 bp):
AATAAAAGAAAGA
Found at i:9632171 original size:20 final size:18
Alignment explanation
Indices: 9632138--9632213 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 18
9632128 CACAAGGGAG
*
9632138 TATCAAATAATATGATGAAT
1 TATCAAA-AATATGA-GAAA
9632158 TATCAAAAATTATGAAGAAA
1 TATCAAAAA-TATG-AGAAA
*
9632178 TACCAAAAGATATGAGAAAA
1 TATCAAAA-ATATGAG-AAA
9632198 TATCAAAAATTATGAG
1 TATCAAAAA-TATGAG
9632214 TGGTTACCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 5 0.10
20 41 0.85
21 2 0.04
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.26
Consensus pattern (18 bp):
TATCAAAAATATGAGAAA
Found at i:9634452 original size:42 final size:42
Alignment explanation
Indices: 9634338--9634466 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
9634328 TTTAACTCAT
* * * * * *
9634338 TTCCATTCAACCCTAATGGATTTTCGTTCAGCTCTTTTGAGC
1 TTCCTTTCAACCCTTATGGGTTTTTGTTTAGCTCTTATGAGC
* * *
9634380 TT-CTGTTTAACCCTTATGGGTTTCTATTTAGCTCTTATGAGC
1 TTCCT-TTCAACCCTTATGGGTTTTTGTTTAGCTCTTATGAGC
* *
9634422 TTCCTTTCAACCCTTACGGGTTTTTGTTTAG-TACTTATGTGC
1 TTCCTTTCAACCCTTATGGGTTTTTGTTTAGCT-CTTATGAGC
9634464 TTC
1 TTC
9634467 TGATTAGCCT
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
41 2 0.03
42 66 0.94
43 2 0.03
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (42 bp):
TTCCTTTCAACCCTTATGGGTTTTTGTTTAGCTCTTATGAGC
Found at i:9646984 original size:6 final size:6
Alignment explanation
Indices: 9646973--9647039 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
9646963 GAAGTCTAAG
** * *
9646973 AAAATA AAAATA AAACA-A CTAA-A AAAATA AAAATA AACATA GAAAT-
1 AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
9647019 AAAATA AAGATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAA
9647040 CTGAAAAGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
5 8 0.17
6 39 0.81
7 1 0.02
ACGTcount: A:0.78, C:0.04, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:9647022 original size:17 final size:17
Alignment explanation
Indices: 9646976--9647039 Score: 67
Period size: 17 Copynumber: 3.7 Consensus size: 17
9646966 GTCTAAGAAA
*
9646976 ATAAAAATAAAA-CAAC
1 ATAAAAATAAAATAAAC
*
9646992 TAAAAAAATAAAAATAAAC
1 -ATAAAAAT-AAAATAAAC
* *
9647011 ATAGAAATAAAATAAAG
1 ATAAAAATAAAATAAAC
9647028 ATAAAAATAAAA
1 ATAAAAATAAAA
9647040 CTGAAAAGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 26 0.67
18 10 0.26
19 3 0.08
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.16
Consensus pattern (17 bp):
ATAAAAATAAAATAAAC
Found at i:9647022 original size:23 final size:22
Alignment explanation
Indices: 9646973--9647032 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
9646963 GAAGTCTAAG
*
9646973 AAAATAAAAATAAAACAACTAAA
1 AAAATAAAAAT-AAACAACGAAA
9646996 AAAATAAAAATAAACATA-GAAA
1 AAAATAAAAATAAACA-ACGAAA
*
9647018 TAAAATAAAGATAAA
1 -AAAATAAAAATAAA
9647033 AATAAAACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 8 0.24
23 25 0.76
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (22 bp):
AAAATAAAAATAAACAACGAAA
Found at i:9649102 original size:18 final size:18
Alignment explanation
Indices: 9649072--9649117 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
9649062 TTGAAGAAGG
9649072 AAGGAAGGGAAAAAGAGAA
1 AAGGAAGGGAAAAAGA-AA
9649091 AAGGAA-GGAAAAAGAAA
1 AAGGAAGGGAAAAAGAAA
9649108 AA--AAGGGAAA
1 AAGGAAGGGAAA
9649118 GGAGATGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.08
16 5 0.19
17 4 0.15
18 9 0.35
19 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AAGGAAGGGAAAAAGAAA
Found at i:9655832 original size:24 final size:24
Alignment explanation
Indices: 9655804--9655862 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
9655794 CATCTTACCG
* *
9655804 CCTTATCTCTCATTCTATTACCTT
1 CCTTATCTCTCATTCTATCACATT
*
9655828 CCTTATCTCTCATTCTCTCACATT
1 CCTTATCTCTCATTCTATCACATT
9655852 CCTTATCTCTC
1 CCTTATCTCTC
9655863 CAACAATGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.15, C:0.37, G:0.00, T:0.47
Consensus pattern (24 bp):
CCTTATCTCTCATTCTATCACATT
Found at i:9658734 original size:42 final size:42
Alignment explanation
Indices: 9658672--9658775 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
9658662 AGTGATTCGG
* * *
9658672 GGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGT
*
9658714 GGGATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGT
9658756 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
9658776 ACCAATGATT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGT
Found at i:9660190 original size:26 final size:26
Alignment explanation
Indices: 9660111--9660192 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
9660101 GATGGTCACG
9660111 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
9660137 CGTGTACCGGA--ATGAT--AGG-TCAC-A
1 TGTGTA--GTACTATG-TGCAGGCT-ACTA
9660161 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
9660187 TGTGTA
1 TGTGTA
9660193 CCGGATAGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
22 2 0.05
23 1 0.02
24 10 0.24
25 10 0.24
26 16 0.38
27 1 0.02
28 2 0.05
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:9660222 original size:101 final size:102
Alignment explanation
Indices: 9660106--9660292 Score: 308
Period size: 101 Copynumber: 1.8 Consensus size: 102
9660096 AAAGTGATGG
9660106 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAATGGTCACATGTGTAGT
9660169 -ACTATGTGCAGGCTACTATGTGTACCGGATAGTTTCGA
65 CAC-ATGTGCAGGCTACTATGTGTACCGGATAGTTTCGA
* *
9660207 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTAATGGTCACATGTGTAGTC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTC
*
9660272 ACATGTGTAGGCTACTATGTG
66 ACATGTGCAGGCTACTATGTG
9660293 AACTGAACAT
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
100 6 0.08
101 39 0.49
102 33 0.41
103 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTC
ACATGTGCAGGCTACTATGTGTACCGGATAGTTTCGA
Found at i:9660236 original size:51 final size:51
Alignment explanation
Indices: 9660102--9660288 Score: 229
Period size: 51 Copynumber: 3.7 Consensus size: 51
9660092 AGTGAAAGTG
* *
9660102 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
*
9660151 ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * * *
9660202 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
*
9660254 ATGGTCACATGTGTAGTCAC-ATGTGTAGGCTACTA
1 ATGGTCACATGTGTAGT-ACTATGTGCAGGCTACTA
9660289 TGTGAACTGA
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 2 0.02
50 42 0.35
51 71 0.60
52 4 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:9660274 original size:12 final size:12
Alignment explanation
Indices: 9660257--9660281 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9660247 AATGGTAATG
9660257 GTCACATGTGTA
1 GTCACATGTGTA
9660269 GTCACATGTGTA
1 GTCACATGTGTA
9660281 G
1 G
9660282 GCTACTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (12 bp):
GTCACATGTGTA
Found at i:9660366 original size:45 final size:45
Alignment explanation
Indices: 9660299--9660387 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
9660289 TGTGAACTGA
* *
9660299 ACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGG
*
9660344 ACATCATTGATTAATAATGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCG
9660388 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:9669772 original size:18 final size:18
Alignment explanation
Indices: 9669738--9669772 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9669728 ATATATGTTA
**
9669738 AAATAATAAAAGTAAAAC
1 AAATAATAAAACAAAAAC
9669756 AAATAATAAAACAAAAA
1 AAATAATAAAACAAAAA
9669773 GACAACCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (18 bp):
AAATAATAAAACAAAAAC
Found at i:9670182 original size:45 final size:45
Alignment explanation
Indices: 9670133--9670347 Score: 184
Period size: 45 Copynumber: 4.8 Consensus size: 45
9670123 TTCTGGAAAT
* *
9670133 GAGTAAGACCACAGCTGAAAAACGCTATGGCATCATGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATGATTCAAAC
*** * * **
9670178 GAGTAAGATTGTAGCTTAAAGAAGCTATGGCATCACAATTCAAAC
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATGATTCAAAC
*** * **
9670223 GAGTAAGATTGTAGCTTAAAGACGCTATGGCATCACAATTC-AAC
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATGATTCAAAC
* * ** * *
9670267 GTGTAAGACCATAGTTGAAAGACATTATGGCAACATGA-TCGAAAT
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATGATTC-AAAC
* * *
9670312 GAATAAGACCATAGTTGAAAGACAC-ATGGCATCATG
1 GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATG
9670348 TCGGAAATAA
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.01
44 40 0.28
45 100 0.70
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGCTATGGCATCATGATTCAAAC
Found at i:9670414 original size:45 final size:44
Alignment explanation
Indices: 9670270--9670394 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
9670260 ATTCAACGTG
*
9670270 TAAGACCATAGTTGAAAGACATTATGGCAACATGATCGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACAT-ATCGAAATGAA
* * *
9670315 TAAGACCATAGTTGAAAGACAC-ATGGCATCATGTCGGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACATATC-GAAATGAA
* * * *
9670359 TAAAATCATAGTTGAAAGGCACTATGGCACCATATC
1 TAAGACCATAGTTGAAAGACACTATGGCAACATATC
9670395 AAAAGTGTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.03
44 35 0.51
45 32 0.46
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.22
Consensus pattern (44 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACATATCGAAATGAA
Found at i:9670819 original size:13 final size:13
Alignment explanation
Indices: 9670801--9670835 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
9670791 AATGGGACAT
9670801 TTGAAATGAACGC
1 TTGAAATGAACGC
*
9670814 TTGAAATGAAGGC
1 TTGAAATGAACGC
9670827 TTGAAATGA
1 TTGAAATGA
9670836 GAAATATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (13 bp):
TTGAAATGAACGC
Found at i:9670955 original size:73 final size:73
Alignment explanation
Indices: 9670844--9670980 Score: 193
Period size: 73 Copynumber: 1.9 Consensus size: 73
9670834 GAGAAATATT
* * *
9670844 AAATGAAAAGATGTTGAATGAGTGATATATCTAATGTGTTTACTTGTATACATTTTATAACATGT
1 AAATGAAAAGATGTTGAATAAATGACATATCTAATGTGTTTACTTGTATACATTTTATAACATGT
9670909 GAAATGTG
66 GAAATGTG
* * * * **
9670917 AAATGAATAGATGTTGAATAAATGGCATATCTATTGTGTTTCCTTGTATATGTTTTATAACATG
1 AAATGAAAAGATGTTGAATAAATGACATATCTAATGTGTTTACTTGTATACATTTTATAACATG
9670981 AAAAGGTTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 55 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (73 bp):
AAATGAAAAGATGTTGAATAAATGACATATCTAATGTGTTTACTTGTATACATTTTATAACATGT
GAAATGTG
Found at i:9674363 original size:23 final size:23
Alignment explanation
Indices: 9674333--9674412 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 23
9674323 TGATTAAACA
* *
9674333 TGCAAGTGATAGTGGCACTATGG
1 TGCAAGTGATAATGACACTATGG
* *
9674356 TGCAAGTGA-AATAGACAGTACGG
1 TGCAAGTGATAAT-GACACTATGG
* * *
9674379 TGCAAGTG-TATTGTCACTTTGG
1 TGCAAGTGATAATGACACTATGG
9674401 TGCAAAGTGATA
1 TGC-AAGTGATA
9674413 TTCGCACGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
22 11 0.25
23 31 0.70
24 2 0.05
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (23 bp):
TGCAAGTGATAATGACACTATGG
Found at i:9677146 original size:22 final size:23
Alignment explanation
Indices: 9677121--9677163 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
9677111 ATATAGTATG
9677121 TAAATAT-TAAAAAATGTTAAGA
1 TAAATATATAAAAAATGTTAAGA
* *
9677143 TAAATATATAGAAAATTTTAA
1 TAAATATATAAAAAATGTTAA
9677164 TAAATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (23 bp):
TAAATATATAAAAAATGTTAAGA
Found at i:9677462 original size:19 final size:19
Alignment explanation
Indices: 9677438--9677474 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9677428 TACTTTGAAG
* *
9677438 TTGAAAATACGTGTTTGTC
1 TTGAAAAAAAGTGTTTGTC
9677457 TTGAAAAAAAGTGTTTGT
1 TTGAAAAAAAGTGTTTGT
9677475 TGTGAAAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (19 bp):
TTGAAAAAAAGTGTTTGTC
Found at i:9678049 original size:27 final size:27
Alignment explanation
Indices: 9678019--9678078 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
9678009 AGCTGCCAAT
*
9678019 ACAG-AATATGTGGCAAAGCCACCAGTA
1 ACAGTAAT-TGTGGCAAAGCCACCAGAA
*
9678046 ACAGTAATTGTGGCAGAGCCACCAGAA
1 ACAGTAATTGTGGCAAAGCCACCAGAA
9678073 ACAGTA
1 ACAGTA
9678079 CTTCCTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (27 bp):
ACAGTAATTGTGGCAAAGCCACCAGAA
Found at i:9678292 original size:26 final size:26
Alignment explanation
Indices: 9678263--9678346 Score: 116
Period size: 26 Copynumber: 3.2 Consensus size: 26
9678253 GCTCTACGGG
9678263 GTATTTTGGTAATTTACCCATCGAGA
1 GTATTTTGGTAATTTACCCATCGAGA
***
9678289 GTATTTCAATAATTTACCCATC-AGA
1 GTATTTTGGTAATTTACCCATCGAGA
*
9678314 GGTATTTTGGTAATTTACCCATCGAGG
1 -GTATTTTGGTAATTTACCCATCGAGA
9678341 GTATTT
1 GTATTT
9678347 CGATAATCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
25 3 0.06
26 44 0.90
27 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (26 bp):
GTATTTTGGTAATTTACCCATCGAGA
Found at i:9685160 original size:17 final size:18
Alignment explanation
Indices: 9685120--9685164 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
9685110 TATTATTATT
*
9685120 TTATTTATTTCCCTCTAC
1 TTATTTATTTCCATCTAC
*
9685138 TTATTTATTTCCATTTA-
1 TTATTTATTTCCATCTAC
9685155 TTATTTATTT
1 TTATTTATTT
9685165 ATTATTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATTTATTTCCATCTAC
Found at i:9692097 original size:84 final size:84
Alignment explanation
Indices: 9691956--9692143 Score: 358
Period size: 84 Copynumber: 2.2 Consensus size: 84
9691946 CCCTAAAGTT
*
9691956 GCAGCGAAGCAGATCAAAGAAGCTTTATTTCTCTTAGTAGCAGTGGAGTAGGTTGAAAATAGTAT
1 GCAGCGAAGCAGATCAAAGAAGCTTTATTTCTCTTAGTAGCAATGGAGTAGGTTGAAAATAGTAT
9692021 ATCTTGTCTTCCTGTATTG
66 ATCTTGTCTTCCTGTATTG
9692040 GCAGCGAAGCAGATCAAAGAAGCTTTATTTCTCTTAGTAGCAATGGAGTAGGTTGAAAATAGTAT
1 GCAGCGAAGCAGATCAAAGAAGCTTTATTTCTCTTAGTAGCAATGGAGTAGGTTGAAAATAGTAT
9692105 ATCTTGTCTTCCTGTATTG
66 ATCTTGTCTTCCTGTATTG
*
9692124 GCAGCGAAGTAGATCAAAGA
1 GCAGCGAAGCAGATCAAAGA
9692144 TAGCAGATCT
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 102 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (84 bp):
GCAGCGAAGCAGATCAAAGAAGCTTTATTTCTCTTAGTAGCAATGGAGTAGGTTGAAAATAGTAT
ATCTTGTCTTCCTGTATTG
Found at i:9692156 original size:45 final size:45
Alignment explanation
Indices: 9692105--9692502 Score: 491
Period size: 45 Copynumber: 8.9 Consensus size: 45
9692095 AAAATAGTAT
*
9692105 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
*
9692150 ATCTTGTCTTCTTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
9692195 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
* *
9692240 ATCTTGTCTTCCTGTATTGGCAGGGAAGTAGATCGAAGATAGTAG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
* * **
9692285 ATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCGAAGATAGTGG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
* * * **
9692330 ATCTTGTCTTCCTGTATTGGAAGCAAAATAGATCGAAGATAGTGG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
* * * *
9692375 ATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGACA-CTAG
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGC-AG
* * * * * * *
9692420 -CCTTG-CATCCCTG-AGTTTGCAGTGGAGCAGA-CTGAAGATAACAG
1 ATCTTGTC-TTCCTGTA-TTGGCAGCGAAGTAGATC-GAAGATAGCAG
* *
9692464 ATCTTGTCTTCCTGTATTGACAGTGAAGTAGATCGAAGA
1 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
9692503 CACCAGTCTT
Statistics
Matches: 306, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.01
44 26 0.08
45 274 0.90
46 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAG
Found at i:9692216 original size:90 final size:90
Alignment explanation
Indices: 9692014--9692413 Score: 499
Period size: 90 Copynumber: 4.5 Consensus size: 90
9692004 TAGGTTGAAA
* * *
9692014 ATAGTATATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCAAAGA-AGC---T-TTAT-TTCTC
1 ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTC-C
* * ** * * * *
9692073 T-TAGTAGCAATGGAGTAGGTTGAAA
65 TGTATTGGCAGCGAAGTAGATCGAAG
* *
9692098 ATAGTATATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTT
1 ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
9692163 GTATTGGCAGCGAAGTAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCGAAG
* *
9692188 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCT
1 ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
*
9692253 GTATTGGCAGGGAAGTAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCGAAG
* * * **
9692278 ATAGTAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCGAAGATAGTGGATCTTGTCTTCCT
1 ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * *
9692343 GTATTGGAAGCAAAATAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCGAAG
* * *
9692368 ATAGTGGATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGA
1 ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGA
9692414 CACTAGCCTT
Statistics
Matches: 278, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
84 45 0.16
85 3 0.01
88 1 0.00
89 4 0.01
90 225 0.81
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (90 bp):
ATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
GTATTGGCAGCGAAGTAGATCGAAG
Found at i:9692533 original size:89 final size:88
Alignment explanation
Indices: 9692374--9692539 Score: 208
Period size: 89 Copynumber: 1.9 Consensus size: 88
9692364 GAAGATAGTG
* *
9692374 GATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGACACTAGCCTTGCATCCCTGAGTTTG
1 GATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGACACCAGCCTTACATCCCTGAGTTT-
*
9692439 CAGTGGAGCAGACTGAAGATAACA
65 CAGTGGAACAGACTGAAGATAACA
* * * * ** *
9692463 GATCTTGTCTTCCTGTATTGACAGTGAAGTAGATCGAAGACACCAGTCTTATTTCCCTGGCGTTA
1 GATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGACACCAGCCTTACATCCCT-GAGTT-
9692528 T-AGTGGAACAGA
64 TCAGTGGAACAGA
9692540 TTAAAGCTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
89 60 0.92
90 4 0.06
91 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (88 bp):
GATCTTGTCTTCCTGTATTGACAGCGAAGTAAATCAAAGACACCAGCCTTACATCCCTGAGTTTC
AGTGGAACAGACTGAAGATAACA
Found at i:9692590 original size:51 final size:51
Alignment explanation
Indices: 9692509--9692679 Score: 234
Period size: 51 Copynumber: 3.4 Consensus size: 51
9692499 AAGACACCAG
* ** *
9692509 TCTTATTTCCCTGGCGTTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAA
1 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * *
9692560 TCTTGTTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGATAGCGGA
1 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * *
9692611 TCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTAAAAGTATCGAA
1 TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
*
9692662 TCTTGTTTCCTTGGCGTT
1 TCTTGTTTCCCTGGCGTT
9692680 ACAGCGGAGT
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (51 bp):
TCTTGTTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
Found at i:9692694 original size:102 final size:103
Alignment explanation
Indices: 9692509--9692714 Score: 270
Period size: 102 Copynumber: 2.0 Consensus size: 103
9692499 AAGACACCAG
* * *
9692509 TCTTATTTCCCTGGCGTTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTGTTTCCTTGG
1 TCTTATTTCCCTAGCGTTACAGTGGAACAGATTAAAGCTAAAAGTAGCAAATCTTGTTTCCTTGG
* * *
9692574 CGTTGCAGTGGAACAGATTAAAGCTAAAG-ATAGCGGA
66 CGTTACAGCGGAACAGATTAAAGCTAAAGTAGAGCGGA
* * * * *
9692611 TCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTAAAAGTATCGAATCTTGTTTCCTTGG
1 TCTTATTTCCCTAGCGTTACAGTGGAACAGATTAAAGCTAAAAGTAGCAAATCTTGTTTCCTTGG
** * *
9692676 CGTTACAGCGGAGTAGATTAGAGCTGAAGTAGAGCGGA
66 CGTTACAGCGGAACAGATTAAAGCTAAAGTAGAGCGGA
9692714 T
1 T
9692715 TAAAGCTGAG
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
102 80 0.91
103 8 0.09
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (103 bp):
TCTTATTTCCCTAGCGTTACAGTGGAACAGATTAAAGCTAAAAGTAGCAAATCTTGTTTCCTTGG
CGTTACAGCGGAACAGATTAAAGCTAAAGTAGAGCGGA
Found at i:9694405 original size:18 final size:18
Alignment explanation
Indices: 9694379--9694420 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9694369 AGATATTCAC
* *
9694379 TATTGTCATTATTATTCT
1 TATTATCATTATTACTCT
*
9694397 TATTATCATTATTACTGT
1 TATTATCATTATTACTCT
9694415 TATTAT
1 TATTAT
9694421 ATTTATCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (18 bp):
TATTATCATTATTACTCT
Found at i:9695456 original size:32 final size:32
Alignment explanation
Indices: 9695408--9695481 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
9695398 AAATAAATTT
*
9695408 TGAAAAGTTAGAAATGTGAAGAGACTTGAATA
1 TGAAAAGTTAGAAATGTGAAGAGACATGAATA
* * *
9695440 TGAAGAGTTAGTAATGTGAAGAGACATGAAGA
1 TGAAAAGTTAGAAATGTGAAGAGACATGAATA
*
9695472 TAAAAAGTTA
1 TGAAAAGTTA
9695482 CACACATGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.26, T:0.24
Consensus pattern (32 bp):
TGAAAAGTTAGAAATGTGAAGAGACATGAATA
Found at i:9695578 original size:38 final size:39
Alignment explanation
Indices: 9695491--9695579 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
9695481 ACACACATGC
* *
9695491 ATGAATAGTCACAACTTCTATAGCATTTAAGTTATGTAA
1 ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
* *
9695530 ATGAACAGTCACAACTCCTATAGCATTT-AGTGATGTAG
1 ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
9695568 ATGAATAGTCAC
1 ATGAATAGTCAC
9695580 TTACAACTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.42
39 26 0.58
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (39 bp):
ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
Found at i:9699969 original size:32 final size:32
Alignment explanation
Indices: 9699898--9699969 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
9699888 ATAAATTTTG
* * *
9699898 AAAAGTTAGAAATGTGAAGAGACTTGGATATG
1 AAAAGTTAGAAATGTGAAGAGACTTGAAGATA
* * *
9699930 AAGAGTTAGTAATGTGGAGAGACTTGAAGATA
1 AAAAGTTAGAAATGTGAAGAGACTTGAAGATA
9699962 AAAAGTTA
1 AAAAGTTA
9699970 CACACATGCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.44, C:0.03, G:0.28, T:0.25
Consensus pattern (32 bp):
AAAAGTTAGAAATGTGAAGAGACTTGAAGATA
Found at i:9700063 original size:38 final size:39
Alignment explanation
Indices: 9699979--9700067 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
9699969 ACACACATGC
*
9699979 ATGAATAGTCACAACTCCTATAGCATTTAAGTTATGTAA
1 ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
*
9700018 ATGAATAGTCACAACTCCTATAGCATTTAA-TGATGTAG
1 ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
9700056 ATGAATAGTCAC
1 ATGAATAGTCAC
9700068 TTATAACTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 18 0.38
39 30 0.62
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (39 bp):
ATGAATAGTCACAACTCCTATAGCATTTAAGTGATGTAA
Found at i:9700282 original size:18 final size:20
Alignment explanation
Indices: 9700259--9700296 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9700249 GCTAACCTTG
9700259 ATGTCCCT-C-CATATATTT
1 ATGTCCCTGCGCATATATTT
9700277 ATGTCCCTGCGCATATATTT
1 ATGTCCCTGCGCATATATTT
9700297 GAGTCTTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 1 0.06
20 9 0.50
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTCCCTGCGCATATATTT
Found at i:9701966 original size:64 final size:64
Alignment explanation
Indices: 9701864--9701984 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 64
9701854 AAGAATCCAC
9701864 CAAAACTTTACACATGTCGAACATGTAACATTAACGTTAGCACCT-ATCACTCCATTAAGACCCT
1 CAAAACTTTACACATGTCGAACATGTAACATTAACGTTAGCACCTGA-CACTCCATTAAGACCCT
* ** * *
9701928 CAAAACTTTACATATGTCGAACATGTGGCATTATCGTTAGGACCTGACACTCCATTA
1 CAAAACTTTACACATGTCGAACATGTAACATTAACGTTAGCACCTGACACTCCATTA
9701985 CACCGCCACC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
64 50 0.98
65 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (64 bp):
CAAAACTTTACACATGTCGAACATGTAACATTAACGTTAGCACCTGACACTCCATTAAGACCCT
Found at i:9703233 original size:43 final size:43
Alignment explanation
Indices: 9703181--9703432 Score: 251
Period size: 43 Copynumber: 5.9 Consensus size: 43
9703171 ATAGACCCTG
* *
9703181 ATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
** * * *
9703224 ATCTTTAGCGGCGCTTTCCCCTA-AAACGTCGC-AATAGACCCTA
1 ATCTTTAGCGGCGCTTTGACC-ACAAACGCCACTAA-AGAACCTA
* * *
9703267 ATCTATAGCGGCGCTTCGACCACAAACACCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
** * *
9703310 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAG-A-CTA
1 ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
* ** * * *
9703351 TGATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTT
1 --ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
*
9703396 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
1 ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAG
9703433 GCCAACACCT
Statistics
Matches: 168, Mismatches: 33, Indels: 16
0.77 0.15 0.07
Matches are distributed among these distances:
41 3 0.02
42 4 0.02
43 156 0.93
44 3 0.02
45 2 0.01
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.23
Consensus pattern (43 bp):
ATCTTTAGCGGCGCTTTGACCACAAACGCCACTAAAGAACCTA
Found at i:9703322 original size:129 final size:128
Alignment explanation
Indices: 9703181--9703432 Score: 303
Period size: 129 Copynumber: 2.0 Consensus size: 128
9703171 ATAGACCCTG
* *
9703181 ATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTA-ATCTTTAGCGGCGCTTTCCCC
1 ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAG-A-CTAGATCTTTAGCGGCGCTTTCCCC
* *
9703245 TA-AAACGTCGC-AATAGACCCTAATCTATAGCGGCGCTTCGACCACAAACACCACTAAAGAACC
64 -ACAAACGCCGCTAA-AGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAGAACC
9703308 TA
127 TA
* * * * * **
9703310 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACTATGATCTTTAGTGGCGCTTTTTCCA
1 ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAGACTA-GATCTTTAGCGGCGCTTTCCCCA
* * * *
9703375 CAAACGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
65 CAAACGCCGCTAAAGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAG
9703433 GCCAACACCT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
127 3 0.03
128 2 0.02
129 97 0.93
130 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.23
Consensus pattern (128 bp):
ATCTATAGCGGCGCTTTCACCAAAAACACCACTAAAGACTAGATCTTTAGCGGCGCTTTCCCCAC
AAACGCCGCTAAAGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAGAACCTA
Found at i:9703419 original size:86 final size:86
Alignment explanation
Indices: 9703173--9703432 Score: 342
Period size: 86 Copynumber: 3.0 Consensus size: 86
9703163 CCGTCGCAAT
*
9703173 AGACCCTGATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGC
1 AGACCATGATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGC
* *
9703238 TTTCCCCTAAAACGTCGC-AA
66 TTTCCCCAAAAACGCCGCTAA
* * *
9703258 TAGACCCTAATCTATAGCGGCGCTTCGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCG
1 -AGACCATGATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCG
9703323 CTTTCCCCAAAAACGCCGCTAA
65 CTTTCCCCAAAAACGCCGCTAA
* * * ** * * * *
9703345 AGACTATGATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGCGC
1 AGACCATGATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGC
** *
9703410 TTTGACCAAAAACGCCACTAA
66 TTTCCCCAAAAACGCCGCTAA
9703431 AG
1 AG
9703433 GCCAACACCT
Statistics
Matches: 154, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
86 152 0.99
87 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (86 bp):
AGACCATGATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGC
TTTCCCCAAAAACGCCGCTAA
Found at i:9703445 original size:43 final size:42
Alignment explanation
Indices: 9703181--9703474 Score: 212
Period size: 43 Copynumber: 6.9 Consensus size: 42
9703171 ATAGACCCTG
* * * *
9703181 ATCTATAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG-ACCAA
** * * * *
9703224 ATCTTTAGCGGCGCTTTCCCCTAAAACGTCGC-AATAGACCCTA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAA-AGA-CCAA
* * * * *
9703267 ATCTATAGCGGCGCTTCGACCACAAACACCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG-ACCAA
** * * *
9703310 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACTATG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCA-A
* ** * * **
9703353 ATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGA-CCAA
*
9703396 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGGCCAA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
* * * ***
9703438 CACCTTTAGTGGCGTTTTTTTCAAAAACGCCACTAAA
1 -ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAA
9703475 TTTGGCAGAT
Statistics
Matches: 196, Mismatches: 48, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
42 7 0.04
43 185 0.94
44 4 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (42 bp):
ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
Found at i:9703445 original size:86 final size:86
Alignment explanation
Indices: 9703190--9703474 Score: 277
Period size: 86 Copynumber: 3.3 Consensus size: 86
9703180 GATCTATAGC
** * * * * *
9703190 GGCGCTTTGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCTAAAACGTCG
1 GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCA
* * * *
9703255 C-AATAGACCCTA-ATCTATAGC
66 CTAA-AGA-CCAACACCTTTAGT
*** * * *
9703276 GGCGCTTCGACCACAAACACCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCAAAAACGCCG
1 GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCA
* ** *
9703341 CTAAAGACTATGATCTTTAGT
66 CTAAAGACCAACACCTTTAGT
* * * *
9703362 GGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCA
1 GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCA
*
9703427 CTAAAGGCCAACACCTTTAGT
66 CTAAAGACCAACACCTTTAGT
* * *
9703448 GGCGTTTTTTTCAAAAACGCCACTAAA
1 GGCGCTTTTTCCACAAACGCCACTAAA
9703475 TTTGGCAGAT
Statistics
Matches: 170, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
85 1 0.01
86 167 0.98
87 2 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (86 bp):
GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCA
CTAAAGACCAACACCTTTAGT
Found at i:9703445 original size:129 final size:129
Alignment explanation
Indices: 9703186--9703474 Score: 300
Period size: 129 Copynumber: 2.2 Consensus size: 129
9703176 CCCTGATCTA
** * *
9703186 TAGCGGCGCTTTGACCACAAACACCACTAAAGAACCTA--ATCTTTAGCGGCGCTTTCCCCTAAA
1 TAGCGGCGCTTTCCCCAAAAACGCCACTAAAG-A-CTATGATCTTTAGCGGCGCTTTCCCCTAAA
* * * *
9703249 ACGTCGCAATAGACCCTAATCTATAGCGGCGCTTCGACCACAAACACCACTAAAGAACCTAATCT
64 ACGCCGCAATAGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAGAACCAAACCT
9703314 T
129 T
* * **
9703315 TAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGACTATGATCTTTAGTGGCGCTTTTTCC-ACAAA
1 TAGCGGCGCTTTCCCCAAAAACGCCACTAAAGACTATGATCTTTAGCGGCGCTTTCCCCTA-AAA
* * * * *
9703379 CGCCGCTAA-AGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG-GCCAACACC
65 CGCCGC-AATAGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAGAACCAA-ACC
9703442 TT
128 TT
* * ***
9703444 TAGTGGCGTTTTTTTCAAAAACGCCACTAAA
1 TAGCGGCGCTTTCCCCAAAAACGCCACTAAA
9703475 TTTGGCAGAT
Statistics
Matches: 132, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
127 3 0.02
128 5 0.04
129 122 0.92
130 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (129 bp):
TAGCGGCGCTTTCCCCAAAAACGCCACTAAAGACTATGATCTTTAGCGGCGCTTTCCCCTAAAAC
GCCGCAATAGACCCTAATCTATAGCGGCGCTTCGACCAAAAACACCACTAAAGAACCAAACCTT
Found at i:9703837 original size:21 final size:21
Alignment explanation
Indices: 9703777--9703839 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
9703767 TTTGACGCTG
* * *
9703777 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCTCTAGCTGCCGC
* *
9703798 CTATACTTCTCTAGCTGCCGC
1 CTCTGCTTCTCTAGCTGCCGC
*
9703819 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCTCTAGCTGCCGC
9703840 ATCTACTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.06, C:0.43, G:0.17, T:0.33
Consensus pattern (21 bp):
CTCTGCTTCTCTAGCTGCCGC
Found at i:9703902 original size:66 final size:65
Alignment explanation
Indices: 9703818--9703960 Score: 191
Period size: 66 Copynumber: 2.2 Consensus size: 65
9703808 CTAGCTGCCG
* *
9703818 CCTCTGCTTCTCTTGCTGCCGCATCTACTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCCGCATCTACTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT--TT
9703881 GAA
63 GAA
* * * *
9703884 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTGAA
1 CCTCAGCTTCTCTCGCTGCCGCATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTGAA
9703949 CCTCAGCTTCTC
1 CCTCAGCTTCTC
9703961 CCGATGTTGC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
65 18 0.26
66 47 0.68
67 4 0.06
ACGTcount: A:0.13, C:0.29, G:0.17, T:0.40
Consensus pattern (65 bp):
CCTCAGCTTCTCTCGCTGCCGCATCTACTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTGAA
Found at i:9703979 original size:65 final size:65
Alignment explanation
Indices: 9703857--9703986 Score: 181
Period size: 65 Copynumber: 2.0 Consensus size: 65
9703847 TTAAGCTGCT
* * * *
9703857 GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGT
1 GCTGGAGTTCTTCATACTTTC-TTGAACCTCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTGT
9703922 A
65 A
* *
9703923 GCTGGAGTTCTTCATATCTTT-TTGAACCTCAGCTTCTCCCGATGTTGCCTCCGCTTTAAGTTGT
1 GCTGGAGTTCTTCATA-CTTTCTTGAACCTCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTGT
9703987 GTAATTTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
65 37 0.65
66 16 0.28
67 4 0.07
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (65 bp):
GCTGGAGTTCTTCATACTTTCTTGAACCTCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTGTA
Found at i:9709458 original size:25 final size:25
Alignment explanation
Indices: 9709430--9709547 Score: 89
Period size: 25 Copynumber: 4.8 Consensus size: 25
9709420 AGTGATGTAT
9709430 TATGTAAGTTATTTATTATGAAAAC
1 TATGTAAGTTATTTATTATGAAAAC
* * *
9709455 TATGTAAGTTGTGTATTATGAAAAT
1 TATGTAAGTTATTTATTATGAAAAC
* * * **
9709480 TATGCTATGTAAGTTA-TAT-AAGTC
1 TATG-TAAGTTATTTATTATGAAAAC
* * * **
9709504 -ATATAAGTTATGTATTATGTAAGT
1 TATGTAAGTTATTTATTATGAAAAC
9709528 TATGTAAGTTATTTATTATG
1 TATGTAAGTTATTTATTATG
9709548 CAAATTGTTA
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
22 7 0.10
23 5 0.07
24 3 0.04
25 46 0.69
26 6 0.09
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.46
Consensus pattern (25 bp):
TATGTAAGTTATTTATTATGAAAAC
Done.