Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 35 of 196
Found at i:9709501 original size:9 final size:9
Alignment explanation
Indices: 9709485--9709539 Score: 69
Period size: 9 Copynumber: 6.3 Consensus size: 9
9709475 AAAATTATGC
9709485 TATGTAAGT
1 TATGTAAGT
*
9709494 TATATAAGT
1 TATGTAAGT
* *
9709503 CATATAAGT
1 TATGTAAGT
9709512 TATGT-A-T
1 TATGTAAGT
9709519 TATGTAAGT
1 TATGTAAGT
9709528 TATGTAAGT
1 TATGTAAGT
9709537 TAT
1 TAT
9709540 TTATTATGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
7 6 0.15
8 2 0.05
9 32 0.80
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (9 bp):
TATGTAAGT
Found at i:9709528 original size:16 final size:16
Alignment explanation
Indices: 9709414--9709533 Score: 69
Period size: 16 Copynumber: 7.9 Consensus size: 16
9709404 ATAATTAAGC
*
9709414 TATGTAAGTGATGTAT
1 TATGTAAGTTATGTAT
*
9709430 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
*
9709446 TATG-AA---A---AC
1 TATGTAAGTTATGTAT
*
9709455 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * *
9709471 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
*
9709485 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
9709503 CATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
9709519 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
9709534 AGTTATTTAT
Statistics
Matches: 75, Mismatches: 18, Indels: 22
0.65 0.16 0.19
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
12 1 0.01
14 10 0.13
15 2 0.03
16 43 0.57
17 1 0.01
18 11 0.15
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:9709640 original size:56 final size:56
Alignment explanation
Indices: 9709565--9709730 Score: 314
Period size: 56 Copynumber: 3.0 Consensus size: 56
9709555 TTAAAATGTT
* *
9709565 ATGTAAGTTATGTATAATATTAATTAACTAAGTTATGCAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
9709621 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
9709677 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATAT
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATAT
9709731 CACATCACCC
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 108 1.00
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (56 bp):
ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
Found at i:9709687 original size:22 final size:22
Alignment explanation
Indices: 9709655--9709700 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
9709645 TAATTAAGTT
*
9709655 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
9709677 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
9709699 AT
1 AT
9709701 TAATTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:9709813 original size:13 final size:15
Alignment explanation
Indices: 9709794--9709834 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 15
9709784 CATATAAGTT
9709794 TATGTAAGTTATG-A
1 TATGTAAGTTATGTA
9709808 -ATGTAAGTTATGTA
1 TATGTAAGTTATGTA
9709822 TTATGTAAGTTAT
1 -TATGTAAGTTAT
9709835 TTAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
16 11 0.46
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (15 bp):
TATGTAAGTTATGTA
Found at i:9709829 original size:16 final size:16
Alignment explanation
Indices: 9709793--9709871 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
9709783 ACATATAAGT
9709793 TTATGTAAGTTATG-A
1 TTATGTAAGTTATGTA
9709808 --ATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
9709822 TTATGTAAGTTATTTAAA
1 TTATGTAAGTTATGT--A
* *
9709840 TTATTTAAGTTGTGTA
1 TTATGTAAGTTATGTA
* *
9709856 TTATATAAGTCATGTA
1 TTATGTAAGTTATGTA
9709872 GGCTATGTGT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
13 12 0.23
14 1 0.02
16 26 0.50
18 13 0.25
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:9712477 original size:8 final size:10
Alignment explanation
Indices: 9712454--9712490 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
9712444 TAATAACTAT
9712454 ATATATATCC
1 ATATATATCC
*
9712464 ATATATATTC
1 ATATATATCC
9712474 ATATATATCC
1 ATATATATCC
9712484 ATATATA
1 ATATATA
9712491 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:9714234 original size:15 final size:15
Alignment explanation
Indices: 9714214--9714250 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
9714204 ACTGTTGAAA
9714214 CCCTAAACCTCCAAC
1 CCCTAAACCTCCAAC
9714229 CCCTAAACCTCCAAC
1 CCCTAAACCTCCAAC
9714244 CCCTAAA
1 CCCTAAA
9714251 TTAACCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.51, G:0.00, T:0.14
Consensus pattern (15 bp):
CCCTAAACCTCCAAC
Found at i:9714932 original size:83 final size:83
Alignment explanation
Indices: 9714802--9715084 Score: 288
Period size: 83 Copynumber: 3.4 Consensus size: 83
9714792 CTAAAGGTAG
* * * * * * *
9714802 CATTAGCGGCGCTTACATATAAAACGCCGCTAAAGGCCAGGGTATTAGTGGCGTTAAGATAAAAA
1 CATTAGCGGCGCTTAGACAAAAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAA
9714867 CGCCACTAAAAACACGAA
66 CGCCACTAAAAACACGAA
* * * ** * *
9714885 CTTTAGCGGCACTTAGACAAAAAATGCCGCTAAAGAACAGAGAATTAGTGGCGCTCAGACAATAA
1 CATTAGCGGCGCTTAGACAAAAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAA
** * *
9714950 CGCCACTAATGATACGAG
66 CGCCACTAAAAACACGAA
9714968 CATTAGCGGCGCTTAGAC-AAAAACGCCGCTAAAGGCCAGA-ACATTAGTGGCGCTCAGATAAAA
1 CATTAGCGGCGCTTAGACAAAAAACGCCGCTAAAGGCCAGAGA-ATTAGTGGCGCTCAGATAAAA
* * *
9715031 ACGCCGCTAAAGATC-GGATA
65 ACGCCACTAAA-AACACGA-A
* **
9715051 -ATTAGCGGCGC-TAAAGTAAAAACGCCGCTAAAGG
1 CATTAGCGGCGCTTAGACAAAAAACGCCGCTAAAGG
9715085 TTTAAAAATC
Statistics
Matches: 162, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
81 4 0.02
82 77 0.48
83 81 0.50
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (83 bp):
CATTAGCGGCGCTTAGACAAAAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAA
CGCCACTAAAAACACGAA
Found at i:9715025 original size:82 final size:81
Alignment explanation
Indices: 9714800--9715084 Score: 295
Period size: 82 Copynumber: 3.5 Consensus size: 81
9714790 CGCTAAAGGT
* * ** * *
9714800 AGCATTAGCGGCGCTTACATATAAAACGCCGCTAAAGGCCAGGGTATTAGTGGCGTTAAGATAAA
1 AGCATTAGCGGCGCTTAGACA-AAAACGCCGCTAAAGGCCA-GAAATTAGTGGCGCTCAGATAAA
* *
9714865 AACGCCACTAAAAACACG
64 AACGCCACTAAAGATACG
* * * * ** * *
9714883 AACTTTAGCGGCACTTAGACAAAAAATGCCGCTAAAGAACAGAGAATTAGTGGCGCTCAGACAAT
1 AGCATTAGCGGCGCTTAGAC-AAAAACGCCGCTAAAGGCCAGA-AATTAGTGGCGCTCAGATAAA
*
9714948 AACGCCACTAATGATACG
64 AACGCCACTAAAGATACG
9714966 AGCATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCCAGAACATTAGTGGCGCTCAGATAAAA
1 AGCATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCCAGAA-ATTAGTGGCGCTCAGATAAAA
*
9715031 ACGCCGCTAAAGAT-CGG
65 ACGCCACTAAAGATAC-G
** * *
9715048 ATAATTAGCGGCGC-TAAAGTAAAAACGCCGCTAAAGG
1 AGCATTAGCGGCGCTTAGA-CAAAAACGCCGCTAAAGG
9715085 TTTAAAAATC
Statistics
Matches: 166, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
81 5 0.03
82 81 0.49
83 79 0.48
84 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (81 bp):
AGCATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCCAGAAATTAGTGGCGCTCAGATAAAAA
CGCCACTAAAGATACG
Found at i:9715042 original size:41 final size:41
Alignment explanation
Indices: 9714765--9715084 Score: 201
Period size: 41 Copynumber: 7.8 Consensus size: 41
9714755 TTTTGTTACT
* *
9714765 ATTAGCGGCGCTTCGGA-AAAAACGCCGCTAAAGG-TAG--C
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGACAGAAC
* * * ***
9714803 ATTAGCGGCGCTTACATATAAAACGCCGCTAAAGGCCAGGGT
1 ATTAGCGGCGCTCAGATA-AAAACGCCGCTAAAGGACAGAAC
* * * * *
9714845 ATTAGTGGCGTTAAGATAAAAACGCCACTAAA-AACACGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAAC
* * * * * *
9714886 TTTAGCGGCACTTAGACAAAAAATGCCGCTAAAGAACAGAGA-
1 ATTAGCGGCGCTCAGA-TAAAAACGCCGCTAAAGGACAGA-AC
* * * * * * *
9714928 ATTAGTGGCGCTCAGACAATAACGCCACT-AATGATACGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAAC
* * *
9714969 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCCAGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAAC
* *
9715010 ATTAGTGGCGCTCAGATAAAAACGCCGCTAAA-GATCGGATA-
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGA-CAGA-AC
*
9715051 ATTAGCGGCGCT-AAAGTAAAAACGCCGCTAAAGG
1 ATTAGCGGCGCTCAGA-TAAAAACGCCGCTAAAGG
9715085 TTTAAAAATC
Statistics
Matches: 216, Mismatches: 50, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
37 2 0.01
38 12 0.06
39 16 0.07
40 11 0.05
41 123 0.57
42 47 0.22
43 5 0.02
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAAC
Found at i:9715917 original size:18 final size:17
Alignment explanation
Indices: 9715883--9715941 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 17
9715873 CTGGAAACAT
9715883 ATTATGATTTAAAATTTTA
1 ATTAT-ATTT-AAATTTTA
9715902 ATTATATTATAAA-TTTA
1 ATTATATT-TAAATTTTA
*
9715919 GATTATATTTAAGATTTTG
1 -ATTATATTTAA-ATTTTA
9715938 ATTA
1 ATTA
9715942 AATTGGTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
17 7 0.20
18 19 0.54
19 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.53
Consensus pattern (17 bp):
ATTATATTTAAATTTTA
Found at i:9718108 original size:15 final size:15
Alignment explanation
Indices: 9718088--9718151 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
9718078 AAAGATAATA
*
9718088 TATTTTTAAATTTTT
1 TATTTTCAAATTTTT
*
9718103 TATTTTCAAGTTTTT
1 TATTTTCAAATTTTT
* *
9718118 AATTTTCACATATTTT
1 TATTTTCAAAT-TTTT
9718134 TATATTTC-AATTTTT
1 TAT-TTTCAAATTTTT
9718149 TAT
1 TAT
9718152 AATAAAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 28 0.70
16 8 0.20
17 4 0.10
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.66
Consensus pattern (15 bp):
TATTTTCAAATTTTT
Found at i:9719101 original size:5 final size:5
Alignment explanation
Indices: 9719091--9719115 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9719081 TTTTATTAGG
9719091 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
9719116 GATATGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:9719788 original size:18 final size:18
Alignment explanation
Indices: 9719765--9719799 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9719755 GTCAAAAATT
9719765 TTAAATAATAATTATAAA
1 TTAAATAATAATTATAAA
*
9719783 TTAAATTATAATTATAA
1 TTAAATAATAATTATAA
9719800 TTATCACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAAATAATAATTATAAA
Found at i:9719791 original size:12 final size:13
Alignment explanation
Indices: 9719761--9719803 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 13
9719751 TTACGTCAAA
* *
9719761 AATTTTAAATAAT
1 AATTATAAATTAT
9719774 AATTATAAATTA-
1 AATTATAAATTAT
9719786 AATTAT-AATTAT
1 AATTATAAATTAT
9719798 AATTAT
1 AATTAT
9719804 CACATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 5 0.19
12 12 0.44
13 10 0.37
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTATAAATTAT
Found at i:9720983 original size:43 final size:43
Alignment explanation
Indices: 9720926--9721011 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
9720916 CCACCACTGC
9720926 TTTGCAGATAAAAACTACCACTGGGTTGTGGATGCATAACATA
1 TTTGCAGATAAAAACTACCACTGGGTTGTGGATGCATAACATA
*
9720969 TTTGTAGATAAAAACTACCACTGGGTTGTGGATGCATAACATA
1 TTTGCAGATAAAAACTACCACTGGGTTGTGGATGCATAACATA
9721012 CATATCATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (43 bp):
TTTGCAGATAAAAACTACCACTGGGTTGTGGATGCATAACATA
Found at i:9721103 original size:38 final size:38
Alignment explanation
Indices: 9721061--9721134 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
9721051 TGTAATAGAA
* *
9721061 CAATTCAACACTAGCAGTATACATGCTTAACATGTATT
1 CAATTCAACACTAGCAATAGACATGCTTAACATGTATT
*
9721099 CAATTCAACACTAGCAATAGACATGCTTATCATGTA
1 CAATTCAACACTAGCAATAGACATGCTTAACATGTA
9721135 CTCTGTAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (38 bp):
CAATTCAACACTAGCAATAGACATGCTTAACATGTATT
Found at i:9724365 original size:43 final size:43
Alignment explanation
Indices: 9724308--9724405 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
9724298 CCACCACCAC
** *
9724308 TTTACAGATAAAAACTACCACTGGGTTGTGGATGCACAATATA
1 TTTACAGATAAAAACTACCACTGGACTGTGGATGCACAACATA
* *
9724351 TTTATAGATAAAAACTGCCACTGGACTGTGGATGCACAACATA
1 TTTACAGATAAAAACTACCACTGGACTGTGGATGCACAACATA
*
9724394 TTTACAAATAAA
1 TTTACAGATAAA
9724406 CTGCCACTCT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (43 bp):
TTTACAGATAAAAACTACCACTGGACTGTGGATGCACAACATA
Found at i:9727207 original size:28 final size:28
Alignment explanation
Indices: 9727186--9727245 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
9727176 AAAATCACTT
9727186 AAAAAT-ATT-AAAAATATAAAAATCCA
1 AAAAATCATTAAAAAATATAAAAATCCA
* *
9727212 AAAAATCATTAAAAAATCTAAAAAACTCA
1 AAAAATCATTAAAAAATATAAAAATC-CA
9727241 AAAAA
1 AAAAA
9727246 AATTTATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.21
27 3 0.10
28 13 0.45
29 7 0.24
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (28 bp):
AAAAATCATTAAAAAATATAAAAATCCA
Found at i:9727245 original size:20 final size:20
Alignment explanation
Indices: 9727203--9727248 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9727193 TTAAAAATAT
*
9727203 AAAAATCCAAAAAATCATTA
1 AAAAATCCAAAAAATCATAA
*
9727223 AAAAATCTAAAAAACTCA-AA
1 AAAAATCCAAAAAA-TCATAA
9727243 AAAAAT
1 AAAAAT
9727249 TTATTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAAATCCAAAAAATCATAA
Found at i:9727862 original size:31 final size:30
Alignment explanation
Indices: 9727824--9727885 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
9727814 TTACAGAATG
*
9727824 AAAATACAAGGATAAAATTGATAACAAAAAT
1 AAAATACAAGGATAAAACTGATAA-AAAAAT
* *
9727855 AAAATACAAGGGTCAAACTGATAAAAAAAT
1 AAAATACAAGGATAAAACTGATAAAAAAAT
9727885 A
1 A
9727886 TACAAATACC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.25
31 21 0.75
ACGTcount: A:0.63, C:0.08, G:0.11, T:0.18
Consensus pattern (30 bp):
AAAATACAAGGATAAAACTGATAAAAAAAT
Found at i:9729122 original size:6 final size:6
Alignment explanation
Indices: 9729079--9729120 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
9729069 TTCATACTTT
* *
9729079 TTAAAA ATAAAA TTAAAA TTAAAA TTAAAA TTAAAA ATAAAA
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA
9729121 ATGGAACAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
TTAAAA
Found at i:9733014 original size:11 final size:11
Alignment explanation
Indices: 9733000--9733029 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
9732990 ACCTTTAATA
9733000 TATTTAAAATG
1 TATTTAAAATG
9733011 TATTTAAAATG
1 TATTTAAAATG
9733022 TATTTAAA
1 TATTTAAA
9733030 TATATTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (11 bp):
TATTTAAAATG
Found at i:9733035 original size:10 final size:11
Alignment explanation
Indices: 9732996--9733036 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
9732986 ATATACCTTT
9732996 AATATATTTAA
1 AATATATTTAA
*
9733007 AATGTATTTAA
1 AATATATTTAA
*
9733018 AATGTATTT-A
1 AATATATTTAA
9733028 AATATATTT
1 AATATATTT
9733037 TCTTTCATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (11 bp):
AATATATTTAA
Found at i:9736176 original size:91 final size:91
Alignment explanation
Indices: 9736029--9736236 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
9736019 TTGATTTTAG
* * *
9736029 TAAATTAATATAAGAACATTTTATTATTAAGAATTGTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTGTATGAAATTATATATCATTATTAAATTAT
* * *
9736094 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* *
9736121 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTGTATGAAATTATATATCATTATTAAATTATA
9736186 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
9736212 CAAATTCATATAAGAAAACTTATTA
1 TAAATTCATATAAGAAAATTTATTA
9736237 GTTATAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
91 91 0.86
92 15 0.14
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTGTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:9736205 original size:26 final size:28
Alignment explanation
Indices: 9736151--9736211 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
9736141 TATTATCAAG
* *
9736151 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
9736179 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
9736205 AATTATA
1 AATTATA
9736212 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:9736397 original size:18 final size:17
Alignment explanation
Indices: 9736371--9736405 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9736361 AATTATTAAA
*
9736371 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9736388 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9736406 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9736529 original size:15 final size:15
Alignment explanation
Indices: 9736494--9736545 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9736484 TTAAGAATTT
*
9736494 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9736508 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9736522 TATTTAATAATAAT-
1 TATTTAATTATAATA
9736536 TATGTTAATT
1 TAT-TTAATT
9736546 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9736638 original size:18 final size:17
Alignment explanation
Indices: 9736610--9736644 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9736600 ATTATTAAGA
*
9736610 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9736627 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9736645 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9736658 original size:120 final size:120
Alignment explanation
Indices: 9736252--9737141 Score: 1597
Period size: 120 Copynumber: 7.4 Consensus size: 120
9736242 AATTATTTTA
* * *
9736252 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAAT-ATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
9736316 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA-
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
9736370 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
* *
9736435 ACAGTATCATATATTATGATTTGAGTAAATTCAT-TAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
9736489 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
9736554 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
9736609 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
9736674 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
9736729 AGTTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
9736794 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
9736849 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATCATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
9736914 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
9736969 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
9737034 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
9737089 AATTTTATTAAATTTTATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
9737142 TAAATATGAT
Statistics
Matches: 743, Mismatches: 26, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
118 58 0.08
119 151 0.20
120 534 0.72
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:9736745 original size:69 final size:69
Alignment explanation
Indices: 9736672--9736865 Score: 172
Period size: 69 Copynumber: 3.1 Consensus size: 69
9736662 AAATTATCTT
*
9736672 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAGTTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTAT
9736737 TAAA
66 TAAA
** * * * * ** *
9736741 TTATA-TATTTTA-ATTAT-A----A-TATATTTA-ATAA-TA-ATT-A-TGTTAA-TT-TATAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTAT
9736791 T---
66 TAAA
9736792 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTAT
9736857 TAAA
66 TAAA
9736861 TTATA
1 TTATA
9736866 TATTTTAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 36
0.62 0.13 0.25
Matches are distributed among these distances:
51 5 0.06
52 5 0.06
53 5 0.06
54 6 0.07
56 5 0.06
57 1 0.01
58 4 0.04
59 7 0.08
60 8 0.09
61 7 0.08
62 4 0.04
63 1 0.01
64 5 0.06
66 6 0.07
67 5 0.06
68 5 0.06
69 10 0.11
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (69 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTAT
TAAA
Found at i:9736769 original size:15 final size:15
Alignment explanation
Indices: 9736734--9736785 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9736724 TTAAGAGTTT
*
9736734 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9736748 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9736762 TATTTAATAATAAT-
1 TATTTAATTATAATA
9736776 TATGTTAATT
1 TAT-TTAATT
9736786 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9736878 original size:18 final size:17
Alignment explanation
Indices: 9736850--9736884 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9736840 ATTATTAAGA
*
9736850 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9736867 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9736885 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9737009 original size:15 final size:15
Alignment explanation
Indices: 9736974--9737025 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9736964 TTAAGAATTT
*
9736974 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9736988 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9737002 TATTTAATAATAAT-
1 TATTTAATTATAATA
9737016 TATGTTAATT
1 TAT-TTAATT
9737026 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9737129 original size:15 final size:16
Alignment explanation
Indices: 9737104--9737144 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
9737094 TATTAAATTT
*
9737104 TATATTTTAATTATAA
1 TATATTTTAATAATAA
9737120 TATA-TTTAATAATAA
1 TATATTTTAATAATAA
9737135 T-TATGTTTAA
1 TATAT-TTTAA
9737145 ATATGATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 2 0.09
15 11 0.50
16 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TATATTTTAATAATAA
Found at i:9737385 original size:16 final size:16
Alignment explanation
Indices: 9737364--9737394 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9737354 TGCTAGTACA
9737364 CCTCTATTCCATTACG
1 CCTCTATTCCATTACG
9737380 CCTCTATTCCATTAC
1 CCTCTATTCCATTAC
9737395 AGCGAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.39, G:0.03, T:0.39
Consensus pattern (16 bp):
CCTCTATTCCATTACG
Found at i:9740048 original size:3 final size:3
Alignment explanation
Indices: 9740040--9740077 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
9740030 TCAACATCTG
*
9740040 CTT CTT CTT CTT CTT CTT CTT CTT CAT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
9740078 GCTCATTCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:9741302 original size:17 final size:18
Alignment explanation
Indices: 9741287--9741325 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
9741277 TAAATAATTT
9741287 AAACTTTTAAAAAATTCA
1 AAACTTTTAAAAAATTCA
*
9741305 AAATTTTTAAAAAAATTCA
1 AAACTTTT-AAAAAATTCA
9741324 AA
1 AA
9741326 TAGTCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
AAACTTTTAAAAAATTCA
Found at i:9741349 original size:22 final size:21
Alignment explanation
Indices: 9741315--9741357 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
9741305 AAATTTTTAA
*
9741315 AAAAATTCAAATAGTCAAAAAT
1 AAAAATTCAAATA-CCAAAAAT
9741337 AAAAATT-ATAATACCAAAAAT
1 AAAAATTCA-AATACCAAAAAT
9741358 TATGAAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAATTCAAATACCAAAAAT
Found at i:9744225 original size:45 final size:45
Alignment explanation
Indices: 9744175--9744275 Score: 148
Period size: 45 Copynumber: 2.2 Consensus size: 45
9744165 TATGGTGCGA
* * *
9744175 ATAAACCACTAACCGGTGCAGATAAAATCTGTTAGTACGGTGTGG
1 ATAAACCACTAACCGATGCAGATAAAATATGTTAATACGGTGTGG
***
9744220 ATAAACCACTATTTGATGCAGATAAAATATGTTAATACGGTGTGG
1 ATAAACCACTAACCGATGCAGATAAAATATGTTAATACGGTGTGG
9744265 ATAAACCACTA
1 ATAAACCACTA
9744276 TTCAATGTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (45 bp):
ATAAACCACTAACCGATGCAGATAAAATATGTTAATACGGTGTGG
Found at i:9744276 original size:45 final size:45
Alignment explanation
Indices: 9744191--9744291 Score: 157
Period size: 45 Copynumber: 2.2 Consensus size: 45
9744181 CACTAACCGG
* * **
9744191 TGCAGATAAAATCTGTTAGTACGGTGTGGATAAACCACTATTTGA
1 TGCAGATAAAATATGTTAATACGGTGTGGATAAACCACTATTCAA
9744236 TGCAGATAAAATATGTTAATACGGTGTGGATAAACCACTATTCAA
1 TGCAGATAAAATATGTTAATACGGTGTGGATAAACCACTATTCAA
*
9744281 TGTAGATAAAA
1 TGCAGATAAAA
9744292 GCTGCTAACA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.30
Consensus pattern (45 bp):
TGCAGATAAAATATGTTAATACGGTGTGGATAAACCACTATTCAA
Found at i:9746844 original size:103 final size:104
Alignment explanation
Indices: 9746665--9746929 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
9746655 AACCGTTATT
* * * *
9746665 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
9746730 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
9746768 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
9746832 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
9746872 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
9746930 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:9747291 original size:30 final size:29
Alignment explanation
Indices: 9747257--9747321 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
9747247 TAATCCACCA
9747257 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
9747287 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
9747317 CCCAA
1 CCCAA
9747322 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:9747295 original size:31 final size:30
Alignment explanation
Indices: 9747264--9747321 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9747254 CCACCCAACT
9747264 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
9747294 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
9747322 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:9754334 original size:103 final size:104
Alignment explanation
Indices: 9754155--9754419 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
9754145 AACCGTTATT
* * * *
9754155 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
9754220 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
9754258 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
9754322 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
9754362 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
9754420 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:9754781 original size:30 final size:29
Alignment explanation
Indices: 9754747--9754811 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
9754737 TAATCCACCA
9754747 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
9754777 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
9754807 CCCAA
1 CCCAA
9754812 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:9754785 original size:31 final size:30
Alignment explanation
Indices: 9754754--9754811 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9754744 CCACCCAACT
9754754 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
9754784 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
9754812 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:9759995 original size:25 final size:25
Alignment explanation
Indices: 9759941--9759995 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
9759931 CTCAATAATA
*
9759941 TATTTATTAAGTCTTATATTTTTTG
1 TATTTATTAAGTCTAATATTTTTTG
* * *
9759966 GATTTATTTATTCTAAT-TTTTTTAG
1 TATTTATTAAGTCTAATATTTTTT-G
9759991 TATTT
1 TATTT
9759996 TAGGTTAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.65
Consensus pattern (25 bp):
TATTTATTAAGTCTAATATTTTTTG
Found at i:9765518 original size:22 final size:23
Alignment explanation
Indices: 9765483--9765527 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
9765473 TGGCTAAATG
* **
9765483 TTTTCATTTAGTGATTAAATAGA
1 TTTTCATTAAGTGAAAAAATAGA
9765506 TTTTC-TTAAGTGAAAAAATAGA
1 TTTTCATTAAGTGAAAAAATAGA
9765528 GGTTGGGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (23 bp):
TTTTCATTAAGTGAAAAAATAGA
Found at i:9766026 original size:30 final size:31
Alignment explanation
Indices: 9765976--9766035 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
9765966 AGAACAATCT
* **
9765976 AGTGATTTAAATGAAAAATTTTGAATAGTTC
1 AGTGACTTAAATGAAAAATTTCAAATAGTTC
9766007 AGTGACTTAAATG-AAAATTTCAAATAGTT
1 AGTGACTTAAATGAAAAATTTCAAATAGTT
9766036 TAGCGACCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (31 bp):
AGTGACTTAAATGAAAAATTTCAAATAGTTC
Found at i:9775206 original size:3 final size:3
Alignment explanation
Indices: 9775198--9775222 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9775188 TGTTTACTCA
9775198 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
9775223 CGGGCCGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9775380 original size:17 final size:17
Alignment explanation
Indices: 9775354--9775394 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
9775344 TTATTGTAAG
9775354 TAACAAAAATAAGAAAA
1 TAACAAAAATAAGAAAA
* *
9775371 TAACAGAAATAATAAAA
1 TAACAAAAATAAGAAAA
*
9775388 TTACAAA
1 TAACAAA
9775395 CAAGCATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.71, C:0.07, G:0.05, T:0.17
Consensus pattern (17 bp):
TAACAAAAATAAGAAAA
Found at i:9778672 original size:63 final size:63
Alignment explanation
Indices: 9778595--9778717 Score: 246
Period size: 63 Copynumber: 2.0 Consensus size: 63
9778585 CATGCTATTT
9778595 TTGAATTTTGAATTTATTTGAATATTTTTGTAATTTTAAATACTTTGTTGTTGAGGATTAAAA
1 TTGAATTTTGAATTTATTTGAATATTTTTGTAATTTTAAATACTTTGTTGTTGAGGATTAAAA
9778658 TTGAATTTTGAATTTATTTGAATATTTTTGTAATTTTAAATACTTTGTTGTTGAGGATTA
1 TTGAATTTTGAATTTATTTGAATATTTTTGTAATTTTAAATACTTTGTTGTTGAGGATTA
9778718 CCATGCGGTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.54
Consensus pattern (63 bp):
TTGAATTTTGAATTTATTTGAATATTTTTGTAATTTTAAATACTTTGTTGTTGAGGATTAAAA
Found at i:9782963 original size:78 final size:78
Alignment explanation
Indices: 9782833--9782987 Score: 292
Period size: 78 Copynumber: 2.0 Consensus size: 78
9782823 ATCACCAAGG
9782833 ATAAAGGCTAAAAGAATAAGGATAATCCTTAATCGATAAGGCATGTCGATCTTAATCTTCCTCAA
1 ATAAAGGCTAAAAGAATAAGGATAATCCTTAATCGATAAGGCATGTCGATCTTAATCTTCCTCAA
9782898 ATAGTCAAACACA
66 ATAGTCAAACACA
* *
9782911 ATAAAGGCTAAAAGAATAAGGATAATCCTTAATTGATAAGGCATGTCTATCTTAATCTTCCTCAA
1 ATAAAGGCTAAAAGAATAAGGATAATCCTTAATCGATAAGGCATGTCGATCTTAATCTTCCTCAA
9782976 ATAGTCAAACAC
66 ATAGTCAAACAC
9782988 GACCACCATG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (78 bp):
ATAAAGGCTAAAAGAATAAGGATAATCCTTAATCGATAAGGCATGTCGATCTTAATCTTCCTCAA
ATAGTCAAACACA
Found at i:9784859 original size:10 final size:10
Alignment explanation
Indices: 9784844--9784871 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
9784834 CCTTAAACAC
9784844 AAAATCATCA
1 AAAATCATCA
9784854 AAAATCATCA
1 AAAATCATCA
9784864 AAAATCAT
1 AAAATCAT
9784872 TTATTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAATCATCA
Found at i:9789606 original size:66 final size:67
Alignment explanation
Indices: 9789485--9789615 Score: 165
Period size: 67 Copynumber: 2.0 Consensus size: 67
9789475 CCATTTTCTA
* * *
9789485 ATAATTGACAATTACCAGTCACGCAGAGTATACTCTTAAGAACTTCACACAGAATATGCTCAGAC
1 ATAATTGAAAATTACCAGTCAAGCAGAGTATACTCTTAAGAACTTCACACAGAATACGCTCAGAC
9789550 GC
66 GC
* * * * * * *
9789552 ATAATTGAAAATTACCGGTCAAGCGGAGTGTATTC-TAAGAACTTCATACTGAATACGTTCAGAC
1 ATAATTGAAAATTACCAGTCAAGCAGAGTATACTCTTAAGAACTTCACACAGAATACGCTCAGAC
9789616 TTCAGACAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
66 25 0.46
67 29 0.54
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (67 bp):
ATAATTGAAAATTACCAGTCAAGCAGAGTATACTCTTAAGAACTTCACACAGAATACGCTCAGAC
GC
Found at i:9795113 original size:14 final size:15
Alignment explanation
Indices: 9795094--9795122 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9795084 ACAATATGCC
9795094 AAAATTGCT-GAAAG
1 AAAATTGCTGGAAAG
9795108 AAAATTGCTGGAAAG
1 AAAATTGCTGGAAAG
9795123 CCATCATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.07, G:0.24, T:0.21
Consensus pattern (15 bp):
AAAATTGCTGGAAAG
Found at i:9797739 original size:17 final size:14
Alignment explanation
Indices: 9797708--9797751 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
9797698 ATAAGAGAGT
*
9797708 GAAAAAAAATGAAA
1 GAAAAAAAATAAAA
9797722 GTTAAAAAAACATAAAA
1 G--AAAAAAA-ATAAAA
9797739 GAAAAAAAATAAA
1 GAAAAAAAATAAA
9797752 TTGCTCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.23
15 7 0.27
16 7 0.27
17 6 0.23
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.11
Consensus pattern (14 bp):
GAAAAAAAATAAAA
Found at i:9798507 original size:22 final size:22
Alignment explanation
Indices: 9798463--9798507 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9798453 TAAAAGTTAC
*
9798463 AAAATTTTCATTAAATTATTTG
1 AAAATTTTCATTAAATTAATTG
*
9798485 AAAATTTTCTTTTAAA-TAATTG
1 AAAATTTTC-ATTAAATTAATTG
9798507 A
1 A
9798508 GCTATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (22 bp):
AAAATTTTCATTAAATTAATTG
Found at i:9803537 original size:21 final size:21
Alignment explanation
Indices: 9803499--9803539 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9803489 GGATCAAATT
*
9803499 AATTTTACTATTAAATTGTTC
1 AATTTAACTATTAAATTGTTC
* *
9803520 AATTTAACTCTTATATTGTT
1 AATTTAACTATTAAATTGTT
9803540 AAAAATAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (21 bp):
AATTTAACTATTAAATTGTTC
Found at i:9806895 original size:29 final size:29
Alignment explanation
Indices: 9806863--9806926 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
9806853 ATAAAAGAAC
* *
9806863 CATTAGAAGAATCACAAGAAAAACTGATT
1 CATTAAAAGAATCAAAAGAAAAACTGATT
*
9806892 CATTAAAAGAATCAAAAGAAAACCTGATT
1 CATTAAAAGAATCAAAAGAAAAACTGATT
9806921 CATTAA
1 CATTAA
9806927 CCAAAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.53, C:0.14, G:0.11, T:0.22
Consensus pattern (29 bp):
CATTAAAAGAATCAAAAGAAAAACTGATT
Found at i:9809590 original size:14 final size:15
Alignment explanation
Indices: 9809551--9809592 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9809541 TTTTAACATA
*
9809551 ATTATTATTAAATAT
1 ATTATAATTAAATAT
9809566 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
9809580 A-TATAATTTAATA
1 ATTATAATTAAATA
9809593 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:9809701 original size:16 final size:16
Alignment explanation
Indices: 9809657--9809729 Score: 55
Period size: 16 Copynumber: 4.6 Consensus size: 16
9809647 TACTATAAAA
*
9809657 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
9809673 TATTATT-AAATATAT
1 TATAATTAAAATATAT
9809688 TATAATTAAAATATAT
1 TATAATTAAAATATAT
*
9809704 AATTTAA-TAAAAT-TAT
1 --TATAATTAAAATATAT
9809720 TAATAATTAA
1 T-ATAATTAA
9809730 TATTCTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 5 0.11
15 13 0.28
16 18 0.39
17 6 0.13
18 4 0.09
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:9809703 original size:18 final size:18
Alignment explanation
Indices: 9809682--9809729 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
9809672 TTATTATTAA
9809682 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
9809700 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
9809717 -TAT-TAATAATTAA
1 ATATATTATAATTAA
9809730 TATTCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:9809966 original size:120 final size:120
Alignment explanation
Indices: 9809542--9809957 Score: 735
Period size: 120 Copynumber: 3.5 Consensus size: 120
9809532 TTAATCATAT
9809542 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
9809607 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
*
9809662 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
9809727 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
* *
9809782 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
9809847 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
* * *
9809902 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
9809958 TAAAATAATT
Statistics
Matches: 283, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 281 0.99
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
Found at i:9810008 original size:47 final size:46
Alignment explanation
Indices: 9809939--9810197 Score: 193
Period size: 47 Copynumber: 5.7 Consensus size: 46
9809929 TTAATTAAAA
*
9809939 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * *
9809986 TATATGAATTTGTATAATTTAAAATAATTAT--TATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * *
9810031 TA-AT-AATAATATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
* *
9810077 TATATGAATTTATATAATTTAAAATAA-T-TAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * *
9810122 TA-AT-AATGATATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
9810168 TATATGAATTTATATAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
9810198 ATATTAAATA
Statistics
Matches: 166, Mismatches: 23, Indels: 47
0.70 0.10 0.20
Matches are distributed among these distances:
43 6 0.04
44 45 0.27
45 18 0.11
46 17 0.10
47 70 0.42
48 10 0.06
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:9810069 original size:91 final size:91
Alignment explanation
Indices: 9809973--9810265 Score: 541
Period size: 91 Copynumber: 3.2 Consensus size: 91
9809963 TAATTATAAC
* *
9809973 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
9810038 AATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
9810064 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
9810129 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
9810155 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
9810220 GATATATAATTTCATAAAATTCTTAA
66 GATATATAATTTCATAAAATTCTTGA
*
9810246 TAATAAATGTTCTTATATGA
1 TAATAAATTTTCTTATATGA
9810266 TAAATGCTTG
Statistics
Matches: 197, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 197 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:9810253 original size:47 final size:46
Alignment explanation
Indices: 9810020--9810253 Score: 209
Period size: 47 Copynumber: 5.1 Consensus size: 46
9810010 TAATTATTAT
*
9810020 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
* * ** *
9810067 TAAAT-T-TTCTTATATGAATTTATATAA-TT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTCATAAAATTCTTAATAA
*
9810111 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
* * ** *
9810158 TAAAT-T-TTCTTATATGAATTTATATAA-TT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTCATAAAATTCTTAATAA
9810202 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
9810249 TAAAT
1 TAAAT
9810254 GTTCTTATAT
Statistics
Matches: 146, Mismatches: 23, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
43 6 0.04
44 50 0.34
45 14 0.10
46 14 0.10
47 56 0.38
48 6 0.04
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
TAAATATAATTTAATAATATATATAATTTCATAAAATTCTTAATAA
Found at i:9810260 original size:16 final size:17
Alignment explanation
Indices: 9810239--9810271 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9810229 TTTCATAAAA
9810239 TTCTTA-ATAATAAATG
1 TTCTTATATAATAAATG
*
9810255 TTCTTATATGATAAATG
1 TTCTTATATAATAAATG
9810272 CTTGAGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (17 bp):
TTCTTATATAATAAATG
Found at i:9810266 original size:44 final size:44
Alignment explanation
Indices: 9810039--9810267 Score: 177
Period size: 44 Copynumber: 5.1 Consensus size: 44
9810029 TTTAATAATA
* *
9810039 ATATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATG
1 ATATATAATTTCATAAAATTCTTAATAATAAATATTCTTATATG
** *
9810083 AATTTATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTAATAATG
1 -A--TATATAATTTCATAAAATTCTTAATAATAAATAT--TCTT-AT-ATG
* *
9810130 ATATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATG
1 ATATATAATTTCATAAAATTCTTAATAATAAATATTCTTATATG
** *
9810174 AATTTATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTAATAATG
1 -A--TATATAATTTCATAAAATTCTTAATAATAAATAT--TCTT-AT-ATG
*
9810221 ATATATAATTTCATAAAATTCTTAATAATAAATGTTCTTATATG
1 ATATATAATTTCATAAAATTCTTAATAATAAATATTCTTATATG
9810265 ATA
1 ATA
9810268 AATGCTTGAG
Statistics
Matches: 144, Mismatches: 19, Indels: 43
0.70 0.09 0.21
Matches are distributed among these distances:
44 57 0.40
45 16 0.11
46 16 0.11
47 55 0.38
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (44 bp):
ATATATAATTTCATAAAATTCTTAATAATAAATATTCTTATATG
Found at i:9810595 original size:16 final size:16
Alignment explanation
Indices: 9810574--9810604 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9810564 TACCAAATAT
9810574 TTGTTTTTTAATCAAG
1 TTGTTTTTTAATCAAG
9810590 TTGTTTTTTAATCAA
1 TTGTTTTTTAATCAA
9810605 TCATAATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.58
Consensus pattern (16 bp):
TTGTTTTTTAATCAAG
Found at i:9810690 original size:64 final size:63
Alignment explanation
Indices: 9810617--9810736 Score: 231
Period size: 64 Copynumber: 1.9 Consensus size: 63
9810607 ATAATAACAA
9810617 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATAT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGAT-CAATTTTAATATAT
9810681 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAATTTT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAATTTT
9810737 TTATTTTATT
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 7 0.12
64 49 0.88
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (63 bp):
TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAATTTTAATATAT
Found at i:9810857 original size:24 final size:26
Alignment explanation
Indices: 9810805--9810854 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
9810795 TATATGTAAT
9810805 ATTATTAAAATAATATTTTTAATTTTA
1 ATTATTAAAATAATATTTTTAA-TTTA
*
9810832 ATTATTTAAA-AATATTTTTAATT
1 ATTATTAAAATAATATTTTTAATT
9810855 AATGCGTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 11 0.50
27 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTTAATTTA
Found at i:9813018 original size:41 final size:41
Alignment explanation
Indices: 9812818--9813020 Score: 212
Period size: 41 Copynumber: 5.0 Consensus size: 41
9812808 TGCAAATAAG
* * * * * * *
9812818 ATGTTTCAGACTTTACGTCTAGGAGGCTTGATGCTGATGAA
1 ATGTATCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAA
* * *
9812859 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTG-A
1 ATGTATCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAA
* *
9812899 AT-TACTTCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAA
1 ATGTA--TCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAA
* * *
9812941 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGAA
1 ATGTATCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAA
* * *
9812982 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 ATGTATCAGACTTTATGCCTAGCAGGCTTTATGCCGGTG
9813021 TTTTATATAA
Statistics
Matches: 146, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 3 0.02
41 137 0.94
42 3 0.02
43 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (41 bp):
ATGTATCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAA
Found at i:9819904 original size:38 final size:38
Alignment explanation
Indices: 9819853--9819928 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
9819843 AATTAAAGTG
9819853 AATGTTATTTGGTGATGAATATTATATAAATATATATT
1 AATGTTATTTGGTGATGAATATTATATAAATATATATT
9819891 AATGTTATTTGGTGATGAATATTATATAAATATATATT
1 AATGTTATTTGGTGATGAATATTATATAAATATATATT
9819929 TTATTATTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (38 bp):
AATGTTATTTGGTGATGAATATTATATAAATATATATT
Found at i:9828053 original size:25 final size:25
Alignment explanation
Indices: 9828025--9828247 Score: 142
Period size: 25 Copynumber: 9.1 Consensus size: 25
9828015 GACTCATCAC
* *
9828025 GTATCATCTAGAAGGCCTTTGTGGT
1 GTATCATCTGGAAAGCCTTTGTGGT
*
9828050 GTATCATCTGG-AAGACCTTTATGGCT
1 GTATCATCTGGAAAG-CCTTTGTGG-T
* * *
9828076 -AAT-ATGTGGAAAGCCTTTGTGGC
1 GTATCATCTGGAAAGCCTTTGTGGT
9828099 GTATCATCTGGAAAGCCTTTGTGG-
1 GTATCATCTGGAAAGCCTTTGTGGT
* ** * * * *
9828123 CTATTTTGTGGAAAGCTTTTGTAGC
1 GTATCATCTGGAAAGCCTTTGTGGT
* *
9828148 GTATCATCT-AAAAGGCATTTGTGG-
1 GTATCATCTGGAAA-GCCTTTGTGGT
*
9828172 CTA--ATCTGCAGAAAGCCTTTGTGGT
1 GTATCATCTG--GAAAGCCTTTGTGGT
*
9828197 GTATCAACTGGAAAGCCTTTGTGGCT
1 GTATCATCTGGAAAGCCTTTGTGG-T
* * *
9828223 -AAT-TTGTGGAAAGCCTTTGTGGT
1 GTATCATCTGGAAAGCCTTTGTGGT
9828246 GT
1 GT
9828248 GTTATTTGGA
Statistics
Matches: 151, Mismatches: 32, Indels: 31
0.71 0.15 0.14
Matches are distributed among these distances:
22 4 0.03
23 1 0.01
24 65 0.43
25 75 0.50
26 2 0.01
27 4 0.03
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (25 bp):
GTATCATCTGGAAAGCCTTTGTGGT
Found at i:9828092 original size:24 final size:24
Alignment explanation
Indices: 9828065--9828244 Score: 125
Period size: 24 Copynumber: 7.4 Consensus size: 24
9828055 ATCTGGAAGA
*
9828065 CCTTTATGGCTAATATGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
*
9828089 CCTTTGTGGCGT-ATCATCTGGAAAG
1 CCTTTGTGGC-TAAT-ATGTGGAAAG
* *
9828114 CCTTTGTGGCTATTTTGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
* * * *
9828138 CTTTTGTAGCGT-ATCATCT-AAAAGG
1 CCTTTGTGGC-TAAT-ATGTGGAAA-G
* * **
9828163 CATTTGTGGCTAATCTGCAGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
* **
9828187 CCTTTGTGG-TGTATCAACTGGAAAG
1 CCTTTGTGGCT-AAT-ATGTGGAAAG
*
9828212 CCTTTGTGGCTAATTTGTGGAAAG
1 CCTTTGTGGCTAATATGTGGAAAG
9828236 CCTTTGTGG
1 CCTTTGTGG
9828245 TGTGTTATTT
Statistics
Matches: 117, Mismatches: 28, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
23 1 0.01
24 61 0.52
25 54 0.46
26 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (24 bp):
CCTTTGTGGCTAATATGTGGAAAG
Found at i:9828260 original size:49 final size:49
Alignment explanation
Indices: 9828039--9828247 Score: 269
Period size: 49 Copynumber: 4.3 Consensus size: 49
9828029 CATCTAGAAG
* *
9828039 GCCTTTGTGGTGTATCATCTGG-AAGACCTTTATGGCTAATATGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAG-CCTTTGTGGCTAATTTGTGGAAA
* *
9828088 GCCTTTGTGGCGTATCATCTGGAAAGCCTTTGTGGCTATTTTGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
* * * * * * **
9828137 GCTTTTGTAGCGTATCATCT-AAAAGGCATTTGTGGCTAATCTGCAGAAA
1 GCCTTTGTGGTGTATCATCTGGAAA-GCCTTTGTGGCTAATTTGTGGAAA
*
9828186 GCCTTTGTGGTGTATCAACTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
1 GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
9828235 GCCTTTGTGGTGT
1 GCCTTTGTGGTGT
9828248 GTTATTTGGA
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.02
49 127 0.93
50 6 0.04
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.35
Consensus pattern (49 bp):
GCCTTTGTGGTGTATCATCTGGAAAGCCTTTGTGGCTAATTTGTGGAAA
Found at i:9829568 original size:16 final size:15
Alignment explanation
Indices: 9829528--9829567 Score: 71
Period size: 16 Copynumber: 2.6 Consensus size: 15
9829518 TTGAAAAATT
9829528 AATTAAAAAGGACCA
1 AATTAAAAAGGACCA
9829543 AATTGAAAAAGGACCA
1 AATT-AAAAAGGACCA
9829559 AATTAAAAA
1 AATTAAAAA
9829568 AAAGTGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.62, C:0.10, G:0.12, T:0.15
Consensus pattern (15 bp):
AATTAAAAAGGACCA
Found at i:9829631 original size:13 final size:13
Alignment explanation
Indices: 9829609--9829642 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
9829599 ATCGAACTCG
9829609 TAAATA-TTTTTA
1 TAAATATTTTTTA
9829621 TAAATATTTTTTA
1 TAAATATTTTTTA
9829634 TAAATATTT
1 TAAATATTT
9829643 ACGAAGCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TAAATATTTTTTA
Found at i:9829877 original size:32 final size:35
Alignment explanation
Indices: 9829831--9829897 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 35
9829821 TATGTATATT
*
9829831 ATATGTAAATTTAATTTAT-A-TAT-TATATTATA
1 ATATGTAAATTTAATTGATAAGTATATATATTATA
9829863 ATATG-AAATCTTAATTGATAAGTATATATATTATA
1 ATATGTAAAT-TTAATTGATAAGTATATATATTATA
9829898 TAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.13
32 13 0.43
33 1 0.03
34 3 0.10
35 9 0.30
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (35 bp):
ATATGTAAATTTAATTGATAAGTATATATATTATA
Found at i:9833592 original size:22 final size:22
Alignment explanation
Indices: 9833564--9833682 Score: 98
Period size: 22 Copynumber: 5.4 Consensus size: 22
9833554 TACACCACAC
*
9833564 CAGTAGGCACCATAGTGTAAAT
1 CAGTAGGCACCATAGTGCAAAT
* * *
9833586 CAGTAGGCACCAAATTGC-AGT
1 CAGTAGGCACCATAGTGCAAAT
* *
9833607 ACAGTAGGCACCGTAGTACAAAT
1 -CAGTAGGCACCATAGTGCAAAT
* * *
9833630 CAGAAGGCACTATAGTACAGAA-
1 CAGTAGGCACCATAGTGCA-AAT
* * *
9833652 CAATAGACACCGTAGTGCAAAT
1 CAGTAGGCACCATAGTGCAAAT
9833674 CAGTAGGCA
1 CAGTAGGCA
9833683 TCGAATTGAA
Statistics
Matches: 73, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
21 4 0.05
22 65 0.89
23 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.18
Consensus pattern (22 bp):
CAGTAGGCACCATAGTGCAAAT
Found at i:9833630 original size:44 final size:44
Alignment explanation
Indices: 9833564--9833682 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
9833554 TACACCACAC
* * * * *
9833564 CAGTAGGCACCATAGTGTAAATCAGTAGGCACCAAATTGCAGTA
1 CAGTAGGCACCGTAGTGCAAATCAGTAGGCACCAAAGTACAGAA
* * * *
9833608 CAGTAGGCACCGTAGTACAAATCAGAAGGCACTATAGTACAGAA
1 CAGTAGGCACCGTAGTGCAAATCAGTAGGCACCAAAGTACAGAA
* *
9833652 CAATAGACACCGTAGTGCAAATCAGTAGGCA
1 CAGTAGGCACCGTAGTGCAAATCAGTAGGCA
9833683 TCGAATTGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.18
Consensus pattern (44 bp):
CAGTAGGCACCGTAGTGCAAATCAGTAGGCACCAAAGTACAGAA
Found at i:9837307 original size:31 final size:32
Alignment explanation
Indices: 9837269--9837330 Score: 108
Period size: 31 Copynumber: 1.9 Consensus size: 32
9837259 TTCCACAAAC
9837269 AACTTTTAAAAATTGCAC-GTCTCTTTTTTAA
1 AACTTTTAAAAATTGCACGGTCTCTTTTTTAA
9837300 AACTTTTAAAAATTGCACGTGTCTCTTTTTT
1 AACTTTTAAAAATTGCACG-GTCTCTTTTTT
9837331 TTAAAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 18 0.62
33 11 0.38
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (32 bp):
AACTTTTAAAAATTGCACGGTCTCTTTTTTAA
Found at i:9837499 original size:14 final size:13
Alignment explanation
Indices: 9837476--9837505 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
9837466 AACAATTACA
9837476 ATTTAGAAAATTT
1 ATTTAGAAAATTT
9837489 ATTTAAGAAAATTT
1 ATTT-AGAAAATTT
9837503 ATT
1 ATT
9837506 CAATATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
ATTTAGAAAATTT
Found at i:9839146 original size:19 final size:18
Alignment explanation
Indices: 9839124--9839168 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9839114 CTATTTCCTA
*
9839124 AAATAAATATTATTTAATC
1 AAATAAATATT-CTTAATC
* *
9839143 AAATTAATATTCTTAATT
1 AAATAAATATTCTTAATC
9839161 AAATAAAT
1 AAATAAAT
9839169 TTTTCAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATAAATATTCTTAATC
Found at i:9843304 original size:34 final size:36
Alignment explanation
Indices: 9843266--9843332 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
9843256 ATTCTCTTAG
*
9843266 TTCATAATAA-TATTTT-ATTTTTTATT-TTTTTAAT
1 TTCAT-ATAATTATTTTAATTTTCTATTATTTTTAAT
*
9843300 TTCATATAATTTTTTTAATTTTCTATTATTTTT
1 TTCATATAATTATTTTAATTTTCTATTATTTTT
9843333 GAATAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 4 0.14
34 10 0.36
35 9 0.32
36 5 0.18
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (36 bp):
TTCATATAATTATTTTAATTTTCTATTATTTTTAAT
Found at i:9843330 original size:19 final size:19
Alignment explanation
Indices: 9843287--9843332 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
9843277 ATTTTATTTT
9843287 TTATTTTTTTAATTTCATA
1 TTATTTTTTTAATTTCATA
*
9843306 TAATTTTTTTAATTTTC-TA
1 TTATTTTTTTAA-TTTCATA
9843325 TTATTTTT
1 TTATTTTT
9843333 GAATAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTATTTTTTTAATTTCATA
Found at i:9843370 original size:19 final size:19
Alignment explanation
Indices: 9843290--9843370 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
9843280 TTATTTTTTA
* *
9843290 TTTTTTTAATTTCATATAA
1 TTTTTTTAATTTTATATAT
*
9843309 TTTTTTTAATTTTCTATTAT
1 TTTTTTTAATTTTATA-TAT
**
9843329 TTTTGAATAATTTGTA-ATAT
1 TTTT-TTTAATTT-TATATAT
9843349 TTTTTTGTAATTTTATAT-T
1 TTTTTT-TAATTTTATATAT
9843368 TTT
1 TTT
9843371 CCATATTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
19 20 0.41
20 21 0.43
21 7 0.14
22 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (19 bp):
TTTTTTTAATTTTATATAT
Found at i:9845862 original size:18 final size:19
Alignment explanation
Indices: 9845834--9845920 Score: 62
Period size: 18 Copynumber: 4.7 Consensus size: 19
9845824 TAAAGTTACA
9845834 AAAATTATTATAAAA-TTAT
1 AAAATT-TTATAAAATTTAT
*
9845853 AAAATTTTAT-AAA--TAA
1 AAAATTTTATAAAATTTAT
*
9845869 AAAATTCTT-TAAAAATTCTTT
1 AAAATT-TTAT-AAAATT-TAT
*
9845890 AAAATATTA-AAAATTTAT
1 AAAATTTTATAAAATTTAT
9845908 AAAA-TTTATAAAA
1 AAAATTTTATAAAA
9845921 AATTTTTTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
16 9 0.17
17 8 0.15
18 17 0.31
19 12 0.22
20 2 0.04
21 6 0.11
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTTTATAAAATTTAT
Found at i:9845884 original size:11 final size:11
Alignment explanation
Indices: 9845868--9845893 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9845858 TTTATAAATA
9845868 AAAAATTCTTT
1 AAAAATTCTTT
9845879 AAAAATTCTTT
1 AAAAATTCTTT
9845890 AAAA
1 AAAA
9845894 TATTAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATTCTTT
Found at i:9845911 original size:9 final size:9
Alignment explanation
Indices: 9845841--9845920 Score: 53
Period size: 9 Copynumber: 8.9 Consensus size: 9
9845831 ACAAAAATTA
9845841 TTATAAAA-
1 TTATAAAAT
9845849 TTATAAAAT
1 TTATAAAAT
9845858 TT-TATAAA-
1 TTATA-AAAT
*
9845866 -TAAAAAAT
1 TTATAAAAT
*
9845874 TCTTTAAAAAT
1 T-TAT-AAAAT
*
9845885 TCTTTAAAAT
1 T-TATAAAAT
9845895 ATTA-AAAAT
1 -TTATAAAAT
9845904 TTATAAAAT
1 TTATAAAAT
9845913 TTATAAAA
1 TTATAAAA
9845921 AATTTTTTGT
Statistics
Matches: 59, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
7 4 0.07
8 14 0.24
9 23 0.39
10 7 0.12
11 11 0.19
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
TTATAAAAT
Found at i:9848789 original size:13 final size:13
Alignment explanation
Indices: 9848771--9848795 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9848761 ATATTATAAC
9848771 TATTTAAATAGTA
1 TATTTAAATAGTA
9848784 TATTTAAATAGT
1 TATTTAAATAGT
9848796 TATAATTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TATTTAAATAGTA
Found at i:9856981 original size:48 final size:49
Alignment explanation
Indices: 9856899--9856992 Score: 138
Period size: 48 Copynumber: 1.9 Consensus size: 49
9856889 GGGAATTCTA
* *
9856899 TTGAATCCTTTATCGTTGCAAGATTAGGCTGACTTAGGTGTTTTTACTG
1 TTGAATCCTTTATCATTGCAAGATTAGGCTGACTTAGGCGTTTTTACTG
*
9856948 TTGAAT-CTGTTATCATTGCGAG-TTAGGCTGACTTAGGCGTTTTTA
1 TTGAATCCT-TTATCATTGCAAGATTAGGCTGACTTAGGCGTTTTTA
9856993 AGCAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
48 24 0.59
49 17 0.41
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (49 bp):
TTGAATCCTTTATCATTGCAAGATTAGGCTGACTTAGGCGTTTTTACTG
Found at i:9862519 original size:24 final size:24
Alignment explanation
Indices: 9862492--9862537 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9862482 AAAATTAATA
9862492 AAATATTTTTAAAACTAATTTTTT
1 AAATATTTTTAAAACTAATTTTTT
* * *
9862516 AAATTTTTTTATAATTAATTTT
1 AAATATTTTTAAAACTAATTTT
9862538 AAATTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (24 bp):
AAATATTTTTAAAACTAATTTTTT
Found at i:9871415 original size:19 final size:19
Alignment explanation
Indices: 9871391--9871430 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
9871381 TTTTGCAATG
9871391 GGATTTTGTGAGAGTTTTA
1 GGATTTTGTGAGAGTTTTA
9871410 GGATTTTGTGAGAGTTTTA
1 GGATTTTGTGAGAGTTTTA
9871429 GG
1 GG
9871431 GTGAGTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (19 bp):
GGATTTTGTGAGAGTTTTA
Found at i:9876209 original size:57 final size:57
Alignment explanation
Indices: 9876090--9876207 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 57
9876080 TCATTTTCAT
* *
9876090 TTTTCTTTTTCATTTTGGAAAAAACCATATTCATTTCCAAATGATTTCATTTCTCCA
1 TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTCATTTCTCCA
** *
9876147 TTTTCATTTTCATTTTGGAGGAAACCTTAATCATTTCCAAATG-TTTCTTATTTCTCCA
1 TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTC--ATTTCTCCA
9876205 TTT
1 TTT
9876208 CACCATTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
56 4 0.07
57 38 0.70
58 12 0.22
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.49
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGGAAAAAACCATAATCATTTCCAAATGATTTCATTTCTCCA
Found at i:9882387 original size:19 final size:20
Alignment explanation
Indices: 9882361--9882415 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
9882351 AAAAAAAATT
9882361 AATA-AAAAATATTTTTAAA
1 AATATAAAAATATTTTTAAA
*
9882380 AAT-TAAAAAGTA--TTAAAA
1 AATATAAAAA-TATTTTTAAA
9882398 AATATAAAATATATTTTT
1 AATATAAAA-ATATTTTT
9882416 TATTAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
18 8 0.29
19 15 0.54
20 3 0.11
21 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATAAAAATATTTTTAAA
Found at i:9886277 original size:38 final size:39
Alignment explanation
Indices: 9886189--9886264 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
9886179 CTTGAAACCG
* *
9886189 AATT-TAATTATTTAATTTTTTATTTTTGAAGTAAATAA
1 AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
*
9886227 AATTATAATTTTTTACTTTTTTA-TTTTAAAGTAAATAA
1 AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
9886265 GGTTAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 18 0.53
39 16 0.47
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (39 bp):
AATTATAATTTTTTAATTTTTTATTTTTAAAGTAAATAA
Found at i:9889607 original size:32 final size:32
Alignment explanation
Indices: 9889570--9889633 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
9889560 CTACTAAGAC
9889570 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
1 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
9889602 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
1 ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
9889634 TGTACTTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.38, G:0.06, T:0.34
Consensus pattern (32 bp):
ACCTGCATTTTTCCCCTTTGACAATCCTCCAA
Found at i:9893498 original size:21 final size:21
Alignment explanation
Indices: 9893466--9893506 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9893456 GAACAATTGG
9893466 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
9893487 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
9893507 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:9897785 original size:24 final size:24
Alignment explanation
Indices: 9897753--9897798 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9897743 CTTGAAACCA
* *
9897753 TTTCCACAGCTCTTTTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
9897777 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
9897799 TCTCTTCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.43, G:0.04, T:0.39
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:9897840 original size:14 final size:14
Alignment explanation
Indices: 9897821--9897850 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9897811 ATCGATTGCA
9897821 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
9897835 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
9897849 GC
1 GC
9897851 TAGTTTTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:9898026 original size:13 final size:13
Alignment explanation
Indices: 9898008--9898033 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9897998 CAAATGGGTA
9898008 GTTTTTTGCAAAT
1 GTTTTTTGCAAAT
9898021 GTTTTTTGCAAAT
1 GTTTTTTGCAAAT
9898034 CAGTTTCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
GTTTTTTGCAAAT
Found at i:9898327 original size:27 final size:27
Alignment explanation
Indices: 9898289--9898346 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
9898279 AAAATTACAG
9898289 CCTTAACACCAATACAGTAGCATCTGA
1 CCTTAACACCAATACAGTAGCATCTGA
9898316 CCTTAACACCAATACAGTAGCATCTGA
1 CCTTAACACCAATACAGTAGCATCTGA
9898343 CCTT
1 CCTT
9898347 CAATGCTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (27 bp):
CCTTAACACCAATACAGTAGCATCTGA
Found at i:9899721 original size:17 final size:15
Alignment explanation
Indices: 9899687--9899729 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
9899677 AATGGCATGG
*
9899687 CATTTGTTTTTGAAA
1 CATTTGTTTTTCAAA
9899702 CATTTGTTTCATTCAAA
1 CATTTGTTT--TTCAAA
9899719 CATTTGTTTTT
1 CATTTGTTTTT
9899730 ATATATACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
17 14 0.56
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (15 bp):
CATTTGTTTTTCAAA
Found at i:9900660 original size:15 final size:15
Alignment explanation
Indices: 9900640--9900670 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9900630 AAAATATTAA
9900640 CATCATCAATCACAT
1 CATCATCAATCACAT
9900655 CATCATCAATCACAT
1 CATCATCAATCACAT
9900670 C
1 C
9900671 CTTGGCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (15 bp):
CATCATCAATCACAT
Found at i:9900855 original size:18 final size:18
Alignment explanation
Indices: 9900794--9900855 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
9900784 TCATTGCAAT
9900794 ATATGTAAAAACAATTTA
1 ATATGTAAAAACAATTTA
* * **
9900812 AAATATAAAAATTTATTAATA
1 ATATGTAAAAA-CAATT--TA
9900833 TATATGTAAAAACAATTTA
1 -ATATGTAAAAACAATTTA
9900852 ATAT
1 ATAT
9900856 ATGTAAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 13 0.41
19 5 0.16
21 5 0.16
22 9 0.28
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
ATATGTAAAAACAATTTA
Found at i:9900855 original size:20 final size:20
Alignment explanation
Indices: 9900791--9900864 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
9900781 AAATCATTGC
9900791 AATATATGTAAAAACAATTT
1 AATATATGTAAAAACAATTT
* ** *
9900811 AA-A-ATATAAAAATTTATTA
1 AATATATGTAAAAA-CAATTT
9900830 ATATATATGTAAAAACAATTT
1 A-ATATATGTAAAAACAATTT
9900851 AATATATGTAAAAA
1 AATATATGTAAAAA
9900865 TAACTTTTCC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 8 0.19
19 5 0.12
20 16 0.38
21 5 0.12
22 8 0.19
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (20 bp):
AATATATGTAAAAACAATTT
Found at i:9901000 original size:14 final size:14
Alignment explanation
Indices: 9900977--9901014 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
9900967 ACAGAAAAGT
9900977 AAAACATTTTCCAG
1 AAAACATTTTCCAG
* *
9900991 AAATCATTTTCCGG
1 AAAACATTTTCCAG
9901005 AAAACATTTT
1 AAAACATTTT
9901015 ACTGCCAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (14 bp):
AAAACATTTTCCAG
Found at i:9911015 original size:23 final size:23
Alignment explanation
Indices: 9910989--9911043 Score: 85
Period size: 23 Copynumber: 2.3 Consensus size: 23
9910979 TGATTTTTAA
9910989 ATTTTAAATTATTTAGTGATAAT
1 ATTTTAAATTATTTAGTGATAAT
9911012 A-TTTAGAATTATTTAGTGATAAT
1 ATTTTA-AATTATTTAGTGATAAT
9911035 ATTTATAAA
1 ATTT-TAAA
9911044 AAATCTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.14
23 19 0.66
24 4 0.14
25 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
ATTTTAAATTATTTAGTGATAAT
Found at i:9911016 original size:13 final size:13
Alignment explanation
Indices: 9910998--9911039 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
9910988 AATTTTAAAT
9910998 TATTTAGTGATAA
1 TATTTAGTGATAA
*
9911011 TATTTA--GA-AT
1 TATTTAGTGATAA
9911021 TATTTAGTGATAA
1 TATTTAGTGATAA
9911034 TATTTA
1 TATTTA
9911040 TAAAAAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:9911962 original size:97 final size:98
Alignment explanation
Indices: 9911784--9911979 Score: 331
Period size: 97 Copynumber: 2.0 Consensus size: 98
9911774 GTACAATAAA
*
9911784 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
9911849 CCTCTAGAATCTCAAACTCGG-ATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* *
9911881 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACATCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
9911946 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
9911979 A
1 A
9911980 TTATTTTTAA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 80 0.87
98 12 0.13
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:9913213 original size:56 final size:57
Alignment explanation
Indices: 9913100--9913213 Score: 140
Period size: 56 Copynumber: 2.0 Consensus size: 57
9913090 CACCTTTAAA
* * * * * *
9913100 AAACTGCCAATCGTTCTTTTTTTTTAATTATTTCTCCTCCTTCCCTTTTCTTTTTTTT
1 AAACTGCCAATCATTCTCTCTTTTT-ATTATTTCTCCTCCCTCACTTTTCTCTTTTTT
* *
9913158 AAACTGCCAATCATTCTCTCTTTTT-TTATTTCTCTTCCCTCATTTTTCTCTTTTTT
1 AAACTGCCAATCATTCTCTCTTTTTATTATTTCTCCTCCCTCACTTTTCTCTTTTTT
9913214 TTTTTATTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 26 0.54
58 22 0.46
ACGTcount: A:0.14, C:0.25, G:0.03, T:0.58
Consensus pattern (57 bp):
AAACTGCCAATCATTCTCTCTTTTTATTATTTCTCCTCCCTCACTTTTCTCTTTTTT
Found at i:9913215 original size:58 final size:57
Alignment explanation
Indices: 9913100--9913214 Score: 142
Period size: 58 Copynumber: 2.0 Consensus size: 57
9913090 CACCTTTAAA
* * * *
9913100 AAACTGCCAATCGTTCTTTTTTTTTAATTATTTCTCCTCCTTCCCTTTTCTTTTTTTT
1 AAACTGCCAATCATTCTCTCTTTTT-ATTATTTCTCCTCCCTCCCTTTTCTTTTTTTT
* **
9913158 AAACTGCCAATCATTCTCTCTTTTT-TTATTTCTCTTCCCTCATTTTTCTCTTTTTTT
1 AAACTGCCAATCATTCTCTCTTTTTATTATTTCTCCTCCCTCCCTTTTCT-TTTTTTT
9913215 TTTTATTGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 20 0.41
57 7 0.14
58 22 0.45
ACGTcount: A:0.14, C:0.25, G:0.03, T:0.58
Consensus pattern (57 bp):
AAACTGCCAATCATTCTCTCTTTTTATTATTTCTCCTCCCTCCCTTTTCTTTTTTTT
Found at i:9913826 original size:44 final size:44
Alignment explanation
Indices: 9913759--9914444 Score: 407
Period size: 44 Copynumber: 15.6 Consensus size: 44
9913749 GATCTACCAG
* *
9913759 TCTGCTCCACTACAACTTTAGGGAGATAAGATCTGAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
* *
9913803 TCCGCTCCACTGCAACTTCAGGGAGATAGGATCTGAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
* * * *
9913847 TCCGCTCCACTGCGACTTCAGGGAGA-AAGGAT-TGTCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA-GATCTG-AGGTTTTAA
* * *** * *
9913891 TCTGCTTCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGT-TTTAA
** *
9913936 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGA-CTTG-CTTTGCTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATC-TGAGGTT--TTAA
* * *
9913981 TCTGCTCCACTGCAACTTTAGGGAGAT-AGAAT-TGTCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG-ATCTG-AGGTTTTAA
* * *** * *
9914025 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGT-TTTAA
** *
9914070 TCTG-TCTCACTGCAACTTCA-GGAGGATAAGA-CTTG-CTTTGCTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATC-TGAGGTT--TTAA
* * ***
9914115 TCTGCTCCACTGCAACTTCAGGGAGATATGA-CT-A-GATGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
* *
9914156 TCTACT-CTCTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
** * * *
9914199 TCCACTCCACTGTAACTTCAGGGAGATAGGAT-TGTCA-GCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG--AGGTTTTAA
* * *** * *
9914243 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGT-TTTAA
* * * *
9914288 CCTGC-CTCACTGCAACTTCA-GGAGGATAAGA-CT-CGCTTTGCTGAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATCTGAGGTTT--T-AA
* * ***
9914333 TCTGCTTCACTGCAACTTCAGGAAGATAAGA-CT-A-GTTGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
* *
9914374 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
* *
9914417 TCCGCTCCACTGCAACTTCAAGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
9914445 GGACTCAATT
Statistics
Matches: 506, Mismatches: 89, Indels: 94
0.73 0.13 0.14
Matches are distributed among these distances:
40 43 0.08
41 15 0.03
42 4 0.01
43 27 0.05
44 231 0.46
45 174 0.34
46 12 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGGTTTTAA
Found at i:9913948 original size:45 final size:45
Alignment explanation
Indices: 9913891--9914365 Score: 292
Period size: 45 Copynumber: 10.7 Consensus size: 45
9913881 TCGGCTTTAA
* *
9913891 TCTGCTTCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCCTCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
**
9913936 TCTGCCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT-AG
1 TCTGCCTCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAG
* * * ** * *
9913981 TCTG-CTCCACTGCAACTTTAGGGAGAT-AGAATTGTCGGCTTTAA
1 TCTGCCT-CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* * *
9914025 TCTG-CTCCACTGTAACTTCAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCCT-CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* **
9914070 TCTGTCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTT-AG
1 TCTGCCTCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAG
* * *
9914115 TCTG-CTCCACTGCAACTTCAGGGAGATATGACTAG--A--TGC-G
1 TCTGCCT-CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* * *** * *
9914155 ATCT-ACTCTCTGCAACTTCAGGGAGATAAGA-TCTGAGGT-TTTAA
1 -TCTGCCTCACTGCAACTTCAGGGAGATAAGACT-TGCCATCTTCAG
* * * * * *
9914199 TC--CACTCCACTGTAACTTCAGGGAGATAGGA-TTGTCAGCTTTAA
1 TCTGC-CT-CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* *
9914243 TCTG-CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCCT-CACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* * ** *
9914288 CCTGCCTCACTGCAACTTCA-GGAGGATAAGACTCGCTTTGC-TGAG
1 TCTGCCTCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAG
* *
9914333 TCTGCTTCACTGCAACTTCAGGAAGATAAGACT
1 TCTGCCTCACTGCAACTTCAGGGAGATAAGACT
9914366 AGTTGCGATC
Statistics
Matches: 344, Mismatches: 57, Indels: 58
0.75 0.12 0.13
Matches are distributed among these distances:
39 1 0.00
40 25 0.07
41 5 0.01
43 10 0.03
44 100 0.29
45 184 0.53
46 19 0.06
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTGCCTCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
Found at i:9914018 original size:134 final size:134
Alignment explanation
Indices: 9913850--9914142 Score: 514
Period size: 134 Copynumber: 2.2 Consensus size: 134
9913840 GTTTTAATCC
* * * *
9913850 GCTCCACTGCGACTTCAGGGAGAAAGGATTGTCGGCTTTAATCTGCTTCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGA
9913915 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
9913980 GTCT
131 GTCT
* *
9913984 GCTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGA
* *
9914049 GATAAGATTTGTCATCTTCAGTCTGTCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
9914114 GTCT
131 GTCT
9914118 GCTCCACTGCAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
9914143 TGACTAGATG
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
134 150 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (134 bp):
GCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGA
GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTA
GTCT
Found at i:9914248 original size:218 final size:218
Alignment explanation
Indices: 9913985--9914447 Score: 773
Period size: 218 Copynumber: 2.1 Consensus size: 218
9913975 GCTTAGTCTG
* * *
9913985 CTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
* * * * *
9914050 ATAAGATTTGTCATCTTCAGTCTGTCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAG
66 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
* * *
9914115 TCTGCTCCACTGCAACTTCAGGGAGATATGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAG
131 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAG
9914180 ATAAGATCTGAGGTTTTAATCCA
196 ATAAGATCTGAGGTTTTAATCCA
*
9914203 CTCCACTGTAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
9914268 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
66 ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
* * *
9914333 TCTGCTTCACTGCAACTTCAGGAAGATAAGACTAGTTGCGATCTGCTCTCTGCAACTTCAGAGAG
131 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAG
*
9914398 ATAAGATCTGAGGTTTTAATCCG
196 ATAAGATCTGAGGTTTTAATCCA
*
9914421 CTCCACTGCAACTTCAAGGAGATAGGA
1 CTCCACTGCAACTTCAGGGAGATAGGA
9914448 CTCAATTTAA
Statistics
Matches: 227, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
218 227 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (218 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
ATAAGATTTGCCATCTTCAGCCTGCCTCACTGCAACTTCAGGAGGATAAGACTCGCTTTGCTGAG
TCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAG
ATAAGATCTGAGGTTTTAATCCA
Done.