Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 38 of 196
Found at i:10548267 original size:100 final size:99
Alignment explanation
Indices: 10548090--10548408 Score: 435
Period size: 100 Copynumber: 3.2 Consensus size: 99
10548080 GTTGGTGAAT
* ** *
10548090 TGGGACATAGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTG
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGC-ATG
* ** *
10548155 GCACCGAGATGAG-AGGTCTCATGTAAGACCATATC
65 GCACCGATATGAGAACATC-CATGTAAGACCATGTC
10548190 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGA
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATG-
10548255 GCACCGATATGAGAACATCCCATGTAAGA-CATGTC
65 GCACCGATATGAGAACAT-CCATGTAAGACCATGTC
* * *
10548290 TGGGACATGGTGTTGGCACCGAGATTAGAGGTCCCCCGTAAAACCATGTCTGGGACATGGCATGG
1 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT-G
* *
10548355 GCACTGATATGAGAACATCCTATGTAAGACCATGTT
65 GCACCGATATGAGAACATCC-ATGTAAGACCATGTC
* *
10548391 TGGGACATTGCTTTGGCA
1 TGGGACATGGCGTTGGCA
10548409 TGTTATGATC
Statistics
Matches: 197, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
99 4 0.02
100 160 0.81
101 32 0.16
102 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (99 bp):
TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGG
CACCGATATGAGAACATCCATGTAAGACCATGTC
Found at i:10552014 original size:36 final size:36
Alignment explanation
Indices: 10551967--10552089 Score: 149
Period size: 36 Copynumber: 3.4 Consensus size: 36
10551957 GCGGAGGAAA
* *
10551967 TGGAGGGGGAGGAGGCGGGGGAGGGGGTGGGAATGG
1 TGGAGGAGGAGGAGGCGGGGGAGGGAGTGGGAATGG
* * * * *
10552003 TGGAGGAGGAGGAGGTGGTGGAGGCAATGGTG-GTGG
1 TGGAGGAGGAGGAGGCGGGGGAGGGAGTGG-GAATGG
* *
10552039 AGGAGGTGGAGGAGGCGGGGGAGGGAGTGGGAATGG
1 TGGAGGAGGAGGAGGCGGGGGAGGGAGTGGGAATGG
10552075 TGGAGGAGGAGGAGG
1 TGGAGGAGGAGGAGG
10552090 AGGAGGGGGT
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
35 1 0.01
36 67 0.97
37 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.67, T:0.11
Consensus pattern (36 bp):
TGGAGGAGGAGGAGGCGGGGGAGGGAGTGGGAATGG
Found at i:10552025 original size:15 final size:16
Alignment explanation
Indices: 10551999--10552044 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
10551989 GGGGGTGGGA
*
10551999 ATGGTGGAGGAGGAGG
1 ATGGTGGTGGAGGAGG
10552015 A-GGTGGTGGAGGCA--
1 ATGGTGGTGGAGG-AGG
10552029 ATGGTGGTGGAGGAGG
1 ATGGTGGTGGAGGAGG
10552045 TGGAGGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
14 2 0.08
15 21 0.84
16 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.61, T:0.15
Consensus pattern (16 bp):
ATGGTGGTGGAGGAGG
Found at i:10552180 original size:21 final size:21
Alignment explanation
Indices: 10552108--10552165 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
10552098 GTGGAGGCAA
10552108 CGGTGGTGG-GG-GGAGGTGG
1 CGGTGGTGGAGGAGGAGGTGG
* *
10552127 TGG-GAATGGAGGAGGAGGTGG
1 CGGTG-GTGGAGGAGGAGGTGG
10552148 CGGTGGTGGAGGAGGAGG
1 CGGTGGTGGAGGAGGAGG
10552166 CTGGGGTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 5 0.16
20 2 0.06
21 22 0.71
22 1 0.03
ACGTcount: A:0.16, C:0.03, G:0.67, T:0.14
Consensus pattern (21 bp):
CGGTGGTGGAGGAGGAGGTGG
Found at i:10559780 original size:51 final size:51
Alignment explanation
Indices: 10559721--10559823 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
10559711 CCCAAGACTT
10559721 AGTCAATTATCTCACAATGCAAGTAACAT-AAACTTCTTTAGACCTAGTCAA
1 AGTCAATTATCTCACAATGCAAGTAACATAAAAC-TCTTTAGACCTAGTCAA
*
10559772 AGTCAATTATCTCGCAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
1 AGTCAATTATCTCACAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
10559823 A
1 A
10559824 CTCTTATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 46 0.92
52 4 0.08
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (51 bp):
AGTCAATTATCTCACAATGCAAGTAACATAAAACTCTTTAGACCTAGTCAA
Found at i:10561688 original size:14 final size:14
Alignment explanation
Indices: 10561669--10561703 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10561659 AATATAACAT
*
10561669 AATATAACAATATA
1 AATATAACAAGATA
10561683 AATATAACAAGATA
1 AATATAACAAGATA
*
10561697 CATATAA
1 AATATAA
10561704 ATCTAATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.26
Consensus pattern (14 bp):
AATATAACAAGATA
Found at i:10563865 original size:25 final size:24
Alignment explanation
Indices: 10563837--10563923 Score: 61
Period size: 25 Copynumber: 3.6 Consensus size: 24
10563827 CTCGCTTGAA
*
10563837 CTTCCCGATATATGGCTATCCAGAG
1 CTTCCCGATATATGGCT-TACAGAG
** *
10563862 CTTCTTGATAAATGGCTCTACAGAG
1 CTTCCCGATATATGGCT-TACAGAG
* * *
10563887 CTACCCGTTAT-TGGCTTGCATGAG
1 CTTCCCGATATATGGCTTACA-GAG
*
10563911 CTTCCTGA-ATATG
1 CTTCCCGATATATG
10563924 ACTCTGATGA
Statistics
Matches: 46, Mismatches: 14, Indels: 5
0.71 0.22 0.08
Matches are distributed among these distances:
23 5 0.11
24 15 0.33
25 26 0.57
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (24 bp):
CTTCCCGATATATGGCTTACAGAG
Found at i:10566068 original size:25 final size:24
Alignment explanation
Indices: 10565989--10566100 Score: 75
Period size: 25 Copynumber: 4.5 Consensus size: 24
10565979 AATTCATATT
* **
10565989 CGGGAATGCTCATATGAGCACAAAAA
1 CGGGAA-GCTCATCTGAGC-CATGAA
* * *
10566015 CGAGAAGCTCTCTCTCGAGCCATAAAA
1 CGGGAAGCTC-ATCT-GAGCCAT-GAA
*
10566042 CGGGAAGCTCATGTGAGCCATGTAA
1 CGGGAAGCTCATCTGAGCCATG-AA
*
10566067 CGGGAAGCTTATCTGAG-CATG-A
1 CGGGAAGCTCATCTGAGCCATGAA
*
10566089 CAGGAAGCTCAT
1 CGGGAAGCTCAT
10566101 AAGAGCTATA
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
22 11 0.16
24 4 0.06
25 28 0.40
26 11 0.16
27 16 0.23
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCATCTGAGCCATGAA
Found at i:10566141 original size:24 final size:24
Alignment explanation
Indices: 10566044--10566156 Score: 72
Period size: 24 Copynumber: 4.8 Consensus size: 24
10566034 CCATAAAACG
* * *
10566044 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGAGAGCCA-ATAACA
* ** *
10566069 GGAAGCTTATCTGAG-C-ATGACA
1 GGAAGCTCATGAGAGCCAATAACA
* * **
10566091 GGAAGCTCATAAGAG-CTATATTTA
1 GGAAGCTCATGAGAGCCAATA-ACA
10566115 GGAAGCTCATGAGAGCCAATAACA
1 GGAAGCTCATGAGAGCCAATAACA
10566139 GGAAGCTC-TGAAGAGCCA
1 GGAAGCTCATG-AGAGCCA
10566157 TTTATCGTGA
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
22 16 0.23
23 4 0.06
24 32 0.46
25 17 0.25
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (24 bp):
GGAAGCTCATGAGAGCCAATAACA
Found at i:10566227 original size:23 final size:23
Alignment explanation
Indices: 10566139--10566231 Score: 69
Period size: 25 Copynumber: 3.9 Consensus size: 23
10566129 GCCAATAACA
* *
10566139 GGAAGCTCTGAAGAGCCATTTATCG
1 GGAAGCTCCGGAGAGCCA-TT-TCG
* * *
10566164 TGAAGCTCCGGATAGCCATATACAG
1 GGAAGCTCCGGAGAGCCAT-TTC-G
* ** *
10566189 GGAAGTTCAAGCGAGCCATTTCG
1 GGAAGCTCCGGAGAGCCATTTCG
10566212 GGAAGCTCCGGAGAGCCATT
1 GGAAGCTCCGGAGAGCCATT
10566232 AATTAGGAAG
Statistics
Matches: 50, Mismatches: 16, Indels: 6
0.69 0.22 0.08
Matches are distributed among these distances:
23 17 0.34
24 4 0.08
25 29 0.58
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (23 bp):
GGAAGCTCCGGAGAGCCATTTCG
Found at i:10566259 original size:26 final size:26
Alignment explanation
Indices: 10566223--10566282 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
10566213 GAAGCTCCGG
*
10566223 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATGAGGAAGCTCACAA
* * *
10566249 AGAGCCTTTAATGGGGAAGCTCACGA
1 AGAGCCATTAATGAGGAAGCTCACAA
10566275 AGAGCCAT
1 AGAGCCAT
10566283 ATATTGGAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATGAGGAAGCTCACAA
Found at i:10575115 original size:19 final size:17
Alignment explanation
Indices: 10575076--10575119 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 17
10575066 TTCAACCTTT
*
10575076 TTGTATATTATTATGTA
1 TTGTATATTATTATATA
10575093 -TGTATATTATTTGATATA
1 TTGTATATTA-TT-ATATA
10575111 TTGTATATT
1 TTGTATATT
10575120 TTCCTTATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.39
17 2 0.09
18 4 0.17
19 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (17 bp):
TTGTATATTATTATATA
Found at i:10578209 original size:25 final size:26
Alignment explanation
Indices: 10578161--10578210 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
10578151 AAAACTAAAG
10578161 AAAAATATAAAAAAAATTAAATTTATT
1 AAAAATAT-AAAAAAATTAAATTTATT
*
10578188 AAAAATAT-AAAAAATTAGATTTA
1 AAAAATATAAAAAAATTAAATTTA
10578211 AAGTTGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.64
27 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (26 bp):
AAAAATATAAAAAAATTAAATTTATT
Found at i:10578372 original size:26 final size:26
Alignment explanation
Indices: 10578308--10578365 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
10578298 AAAATATAGG
10578308 GAAAATAGAAAAATTTATAAAAATAT
1 GAAAATAGAAAAATTTATAAAAATAT
**
10578334 -AAAATATCAAAATTTATTAAAAAT-T
1 GAAAATAGAAAAATTTA-TAAAAATAT
10578359 GAAAATA
1 GAAAATA
10578366 AATAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (26 bp):
GAAAATAGAAAAATTTATAAAAATAT
Found at i:10580235 original size:18 final size:18
Alignment explanation
Indices: 10580212--10580280 Score: 54
Period size: 19 Copynumber: 3.8 Consensus size: 18
10580202 TAATATTTAT
10580212 TTTTAT-ATATTTTAATAA
1 TTTTATCAT-TTTTAATAA
*
10580230 TTTTAT--TTTTTTATAAA
1 TTTTATCATTTTTAAT-AA
*
10580247 TTTTATCATTTTTACTAA
1 TTTTATCATTTTTAATAA
*
10580265 TTATAATCATATTTTA
1 TT-TTATCAT-TTTTA
10580281 TCTTTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
16 6 0.14
17 9 0.21
18 10 0.24
19 12 0.29
20 5 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATCATTTTTAATAA
Found at i:10580239 original size:24 final size:25
Alignment explanation
Indices: 10580197--10580244 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
10580187 TATAAAAATG
10580197 TTTAATAATATTTATTTTTATATAT
1 TTTAATAATATTTATTTTTATATAT
*
10580222 TTTAATAAT-TTTATTTTTTTATA
1 TTTAATAATATTTATTTTTATATA
10580245 AATTTTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTAATAATATTTATTTTTATATAT
Found at i:10580260 original size:26 final size:26
Alignment explanation
Indices: 10580150--10580251 Score: 84
Period size: 26 Copynumber: 3.8 Consensus size: 26
10580140 TTACTTAGGC
* * **
10580150 TTTTATATTTTTA-ATATTTTTGTAA
1 TTTTATTTTTTTATAAATTTTAATAA
*
10580175 TTTTAAATTTTTTATAAAAATGTTTAATAA
1 TTTT--ATTTTTT-TATAAAT-TTTAATAA
*
10580205 TATTTA--TTTTTATATATTTTAATAA
1 T-TTTATTTTTTTATAAATTTTAATAA
10580230 TTTTATTTTTTTATAAATTTTA
1 TTTTATTTTTTTATAAATTTTA
10580252 TCATTTTTAC
Statistics
Matches: 62, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
24 4 0.06
25 13 0.21
26 19 0.31
27 10 0.16
28 2 0.03
29 4 0.06
30 7 0.11
31 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTTATTTTTTTATAAATTTTAATAA
Found at i:10580433 original size:25 final size:26
Alignment explanation
Indices: 10580368--10580439 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 26
10580358 ATTTTTTCTA
*
10580368 TATT-TTTTAATGAATTATCTATATTTT
1 TATTATTTTAAT-AATT-TTTATATTTT
*
10580395 TATATATTATAATAATTTTTATA-TTT
1 TAT-TATTTTAATAATTTTTATATTTT
10580421 TATTATTTTAATAATTTTT
1 TATTATTTTAATAATTTTT
10580440 TCTAACCATC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 15 0.38
26 6 0.15
27 8 0.20
28 5 0.12
29 6 0.15
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (26 bp):
TATTATTTTAATAATTTTTATATTTT
Found at i:10585515 original size:34 final size:35
Alignment explanation
Indices: 10585460--10585526 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
10585450 CAAACACCAG
*
10585460 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
10585495 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
10585527 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:10590315 original size:16 final size:18
Alignment explanation
Indices: 10590288--10590320 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10590278 TAAAATTGGG
10590288 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
10590305 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
10590321 GTTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:10592881 original size:38 final size:38
Alignment explanation
Indices: 10592830--10592905 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
10592820 CCTCATTGAG
10592830 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
1 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
10592868 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
1 ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
10592906 TTTTTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (38 bp):
ATTGTTTTTTGAGTGCATAAAGGTGAGGTTTGTTTAAT
Found at i:10595878 original size:61 final size:59
Alignment explanation
Indices: 10595751--10596147 Score: 273
Period size: 61 Copynumber: 6.5 Consensus size: 59
10595741 ATCCAATGCT
* * * *
10595751 CAAATCAATTCAACAATATATATATTCATATACGAACCAAATTTGACAATGTATATCTATATA
1 CAAATCAATTCAACAATGTATA-A-CCATATATGAATC-AATTTGACAATGTATATC-ATATA
* * *
10595814 CAAATCAATTCGACAATGTATAACCATATATGAATCAAGTTTGGCAATGTATAATCATAGA
1 CAAATCAATTCAACAATGTATAACCATATATGAATCAA-TTTGACAATGTAT-ATCATATA
* * *
10595875 CAAATTAAATTCAACAGTGTATAACCATATATGAATCAATTCGACAACT-TATATCCATATA
1 CAAA-TCAATTCAACAATGTATAACCATATATGAATCAATTTGACAA-TGTATAT-CATATA
* * ** * * *
10595936 CAATTCAATTTCAACAATGTATAACCATGTACAAATTAATATCAGCAATATGTA-ATCATATA
1 CAAATCAA-TTCAACAATGTATAACCATATATGAATCAATTTGA-C-A-ATGTATATCATATA
* * * * *
10595998 CAAATCAATTCAACAACT-TATATCCATATA-CAATTCAATTTCAACAATGTATAACCATGTA
1 CAAATCAATTCAACAA-TGTATAACCATATATGAA-TCAATTT-GACAATGTAT-ATCATATA
* * * * ** * * *
10596059 CAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT-TATATCCATATT
1 CAAATCAA-TTCAACAATGTATAACCATATATGAATCAATTTGACAA-TGTATAT-CATATA
* *
10596120 CAATTCAATTTCAACAACGTATAACCAT
1 CAAATCAA-TTCAACAATGTATAACCAT
10596148 GCACAAATTA
Statistics
Matches: 265, Mismatches: 49, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
59 5 0.02
60 11 0.04
61 144 0.54
62 76 0.29
63 26 0.10
64 3 0.01
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (59 bp):
CAAATCAATTCAACAATGTATAACCATATATGAATCAATTTGACAATGTATATCATATA
Found at i:10596154 original size:61 final size:61
Alignment explanation
Indices: 10595796--10596189 Score: 239
Period size: 61 Copynumber: 6.4 Consensus size: 61
10595786 ACCAAATTTG
* * * * * ** **
10595796 ACAATGTATATCTATATACAAATCAA-TTCGACAATGTATAACCATATATGAATCAAGTTTG
1 ACAATATATATCCATATACAATTCAATTTCAACAACGTATAACCATATACAAATCAA-TTCA
* * * * ** ** *
10595857 GCAATGTATAAT-CATAGACAAATT-AAATTCAACAGTGTATAACCATATATGAATCAATTCG
1 ACAATATAT-ATCCATATAC-AATTCAATTTCAACAACGTATAACCATATACAAATCAATTCA
* * *
10595918 ACAACT-TATATCCATATACAATTCAATTTCAACAATGTATAACCATGTACAAATTAATATCA
1 ACAA-TATATATCCATATACAATTCAATTTCAACAACGTATAACCATATACAAATCAAT-TCA
* * * * * *
10595980 GCAATATGTAAT-CATATACAAATCAA-TTCAACAACTTATATCCATATACAATTCAATTTCA
1 ACAATATAT-ATCCATATACAATTCAATTTCAACAACGTATAACCATATACAAATCAA-TTCA
* * * * ** * *
10596041 ACAATGTATAACCATGTACAAATT-AATTTCAGCAATATATAATCATATACAAATCAATTCG
1 ACAATATATATCCATATAC-AATTCAATTTCAACAACGTATAACCATATACAAATCAATTCA
* * ** *
10596102 GCAACT-TATATCCATATTCAATTCAATTTCAACAACGTATAACCATGCACAAATTAATTTCA
1 ACAA-TATATATCCATATACAATTCAATTTCAACAACGTATAACCATATACAAATCAA-TTCA
* * *
10596164 GCAATATACAAT-CATATACAAATCAA
1 ACAATATA-TATCCATATACAATTCAA
10596190 GTCGGCAACT
Statistics
Matches: 262, Mismatches: 53, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
60 11 0.04
61 143 0.55
62 104 0.40
63 4 0.02
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.31
Consensus pattern (61 bp):
ACAATATATATCCATATACAATTCAATTTCAACAACGTATAACCATATACAAATCAATTCA
Found at i:10596161 original size:31 final size:31
Alignment explanation
Indices: 10595796--10596186 Score: 264
Period size: 31 Copynumber: 12.7 Consensus size: 31
10595786 ACCAAATTTG
* * * *
10595796 ACAATGTATATCTATATACAAATCAA-TTCG
1 ACAATGTATAACCATATACAAATTAATTTCA
** * *
10595826 ACAATGTATAACCATATATGAATCAAGTTT-G
1 ACAATGTATAACCATATACAAATTAA-TTTCA
* * * *
10595857 GCAATGTATAATCATAGACAAATTAAATTCA
1 ACAATGTATAACCATATACAAATTAATTTCA
* ** * *
10595888 ACAGTGTATAACCATATATGAATCAA-TTCG
1 ACAATGTATAACCATATACAAATTAATTTCA
*
10595918 ACAACT-TATATCCATATAC-AATTCAATTTCA
1 ACAA-TGTATAACCATATACAAATT-AATTTCA
* *
10595949 ACAATGTATAACCATGTACAAATTAATATCA
1 ACAATGTATAACCATATACAAATTAATTTCA
* * * * *
10595980 GCAATATGTAATCATATACAAATCAA-TTCA
1 ACAATGTATAACCATATACAAATTAATTTCA
*
10596010 ACAACT-TATATCCATATAC-AATTCAATTTCA
1 ACAA-TGTATAACCATATACAAATT-AATTTCA
*
10596041 ACAATGTATAACCATGTACAAATTAATTTCA
1 ACAATGTATAACCATATACAAATTAATTTCA
* * * * *
10596072 GCAATATATAATCATATACAAATCAA-TTCG
1 ACAATGTATAACCATATACAAATTAATTTCA
* * *
10596102 GCAACT-TATATCCATATTC-AATTCAATTTCA
1 ACAA-TGTATAACCATATACAAATT-AATTTCA
* **
10596133 ACAACGTATAACCATGCACAAATTAATTTCA
1 ACAATGTATAACCATATACAAATTAATTTCA
* * * *
10596164 GCAATATACAATCATATACAAAT
1 ACAATGTATAACCATATACAAAT
10596187 CAAGTCGGCA
Statistics
Matches: 277, Mismatches: 66, Indels: 35
0.73 0.17 0.09
Matches are distributed among these distances:
29 9 0.03
30 82 0.30
31 172 0.62
32 14 0.05
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.31
Consensus pattern (31 bp):
ACAATGTATAACCATATACAAATTAATTTCA
Found at i:10596263 original size:92 final size:92
Alignment explanation
Indices: 10595809--10596236 Score: 549
Period size: 92 Copynumber: 4.7 Consensus size: 92
10595799 ATGTATATCT
* * ** *
10595809 ATATACAAATCAATTCGACAA-TGTATAACCATATATGAA-TCAAGTTT-GGCAATGTATAATCA
1 ATATACAAATCAATTCGACAACT-TATATCCATATA-CAATTCAA-TTTCAACAATGTATAACCA
* * * * *
10595871 TAG-ACAAATTAAATTCAACAGTGTATAACC
63 T-GTACAAATTAATTTCAGCAATATATAATC
**
10595901 ATATATGAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
* *
10595966 ACAAATTAATATCAGCAATATGTAATC
66 ACAAATTAATTTCAGCAATATATAATC
*
10595993 ATATACAAATCAATTCAACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
10596058 ACAAATTAATTTCAGCAATATATAATC
66 ACAAATTAATTTCAGCAATATATAATC
* * * *
10596085 ATATACAAATCAATTCGGCAACTTATATCCATATTCAATTCAATTTCAACAACGTATAACCATGC
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
*
10596150 ACAAATTAATTTCAGCAATATACAATC
66 ACAAATTAATTTCAGCAATATATAATC
* * * * * **
10596177 ATATACAAATCAAGTCGGCAACTTATATCCATTTGCAAATCAATTTTGACAATGTATAAC
1 ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAAC
10596237 TATAAAAAAT
Statistics
Matches: 300, Mismatches: 32, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
91 6 0.02
92 293 0.98
93 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.31
Consensus pattern (92 bp):
ATATACAAATCAATTCGACAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGT
ACAAATTAATTTCAGCAATATATAATC
Found at i:10596265 original size:25 final size:25
Alignment explanation
Indices: 10596237--10596290 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
10596227 AATGTATAAC
*
10596237 TATAAAA-AATTCGAATTCGACAATA
1 TATAAAACAA-TCAAATTCGACAATA
* *
10596262 TATAAAACAATCAAATTCGGCAATG
1 TATAAAACAATCAAATTCGACAATA
10596287 TATA
1 TATA
10596291 TCTATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (25 bp):
TATAAAACAATCAAATTCGACAATA
Found at i:10601621 original size:34 final size:33
Alignment explanation
Indices: 10601583--10601651 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 33
10601573 ACATTACCAA
* *
10601583 AAACATATATCCGATCAAAATGTCATATTTCTAG
1 AAACATATATCAGATCAAAATATCA-ATTTCTAG
*
10601617 AAACATATATCAGATCAAAATATCAATTTTTAG
1 AAACATATATCAGATCAAAATATCAATTTCTAG
10601650 AA
1 AA
10601652 GTACATATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 9 0.28
34 23 0.72
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (33 bp):
AAACATATATCAGATCAAAATATCAATTTCTAG
Found at i:10601660 original size:33 final size:34
Alignment explanation
Indices: 10601583--10601666 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
10601573 ACATTACCAA
* * *
10601583 AAACATATATCCGATCAAAATGTCATATTTCTAG
1 AAACACATATCAGATCAAAATATCATATTTCTAG
* *
10601617 AAACATATATCAGATCAAAATATCA-ATTTTTAG
1 AAACACATATCAGATCAAAATATCATATTTCTAG
** *
10601650 AAGTACATATCATATCA
1 AAACACATATCAGATCA
10601667 TATTAGAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 20 0.47
34 23 0.53
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (34 bp):
AAACACATATCAGATCAAAATATCATATTTCTAG
Found at i:10604553 original size:19 final size:19
Alignment explanation
Indices: 10604531--10604579 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
10604521 AAATTTTATT
10604531 ATAATATTTAAAT-TTTTAA
1 ATAATATTTAAATATTTT-A
10604550 ATAA-A-TTAATATATTTTA
1 ATAATATTTAA-ATATTTTA
*
10604568 ATTATATTTAAA
1 ATAATATTTAAA
10604580 AACTTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
17 4 0.16
18 7 0.28
19 10 0.40
20 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATATTTAAATATTTTA
Found at i:10608429 original size:3 final size:3
Alignment explanation
Indices: 10608423--10608453 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10608413 TTTGATTCAC
10608423 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
10608454 TTTTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:10617991 original size:24 final size:23
Alignment explanation
Indices: 10617963--10618025 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
10617953 AGGCTCTTTT
*
10617963 ATGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTT-CCGATATTAGCTCGC
* *
10617987 ATGAGCTTACTGATATTAGCTTGC
1 ATGAGCTT-CCGATATTAGCTCGC
10618011 ATGAGCTTCCGATAT
1 ATGAGCTTCCGATAT
10618026 ATTGGACTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 6 0.18
24 28 0.82
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (23 bp):
ATGAGCTTCCGATATTAGCTCGC
Found at i:10618108 original size:31 final size:30
Alignment explanation
Indices: 10618070--10618128 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
10618060 GGCATCTCTC
*
10618070 GAGCTTCCCATTACATGAGCTTTCCATTAAT
1 GAGCTTCCCATTACATG-GCTTCCCATTAAT
*
10618101 GAGCTTCCCATTATATGGCTTCCCATTA
1 GAGCTTCCCATTACATGGCTTCCCATTA
10618129 TATGGCTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.36
Consensus pattern (30 bp):
GAGCTTCCCATTACATGGCTTCCCATTAAT
Found at i:10618135 original size:15 final size:16
Alignment explanation
Indices: 10618070--10618132 Score: 94
Period size: 15 Copynumber: 4.1 Consensus size: 16
10618060 GGCATCTCTC
*
10618070 GAGCTTCCCATTACAT
1 GAGCTTCCCATTATAT
*
10618086 GAGCTTTCCATTA-AT
1 GAGCTTCCCATTATAT
10618101 GAGCTTCCCATTATAT
1 GAGCTTCCCATTATAT
10618117 G-GCTTCCCATTATAT
1 GAGCTTCCCATTATAT
10618132 G
1 G
10618133 GCTCGAAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
15 29 0.66
16 15 0.34
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (16 bp):
GAGCTTCCCATTATAT
Found at i:10625352 original size:24 final size:24
Alignment explanation
Indices: 10625324--10625369 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10625314 AATTCTCGAT
10625324 ATTGGCTAGCT-TGAACTTCCCGAC
1 ATTGGCTAG-TATGAACTTCCCGAC
*
10625348 ATTGGCTAGTATGAGCTTCCCG
1 ATTGGCTAGTATGAACTTCCCG
10625370 TTAATGGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (24 bp):
ATTGGCTAGTATGAACTTCCCGAC
Found at i:10628330 original size:15 final size:15
Alignment explanation
Indices: 10628310--10628361 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
10628300 ATTACAAAAC
10628310 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
10628325 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
10628344 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
10628359 ATT
1 ATT
10628362 AATGTTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:10628425 original size:16 final size:16
Alignment explanation
Indices: 10628394--10628430 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
10628384 ATGTGAAGAA
10628394 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
10628410 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
10628426 TATTA
1 TATTA
10628431 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:10628650 original size:27 final size:27
Alignment explanation
Indices: 10628598--10628650 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
10628588 TAAAATTTAT
* **
10628598 TATCAATATAATAATTTTTTTGTTGAA
1 TATCAATATAATAATTATTAAGTTGAA
10628625 TATCAATATAATAA-TATTAAGCTTGA
1 TATCAATATAATAATTATTAAG-TTGA
10628651 TTTAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.45
Consensus pattern (27 bp):
TATCAATATAATAATTATTAAGTTGAA
Found at i:10630324 original size:98 final size:98
Alignment explanation
Indices: 10630155--10630348 Score: 352
Period size: 98 Copynumber: 2.0 Consensus size: 98
10630145 ATACAATAAA
*
10630155 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
10630220 CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
* *
10630253 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
10630318 CCTTTAGAATCTCAAACTCGGAATATTTCCT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCT
10630349 TCATGATTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTAT
Found at i:10631054 original size:25 final size:26
Alignment explanation
Indices: 10631024--10631073 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10631014 ATATAAATAT
10631024 GAAAATATTC-ATTAAAAAAATATAG
1 GAAAATATTCGATTAAAAAAATATAG
* *
10631049 GAAAATATTCGTTTTAAAAAATATA
1 GAAAATATTCGATTAAAAAAATATA
10631074 TATACATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.32
Consensus pattern (26 bp):
GAAAATATTCGATTAAAAAAATATAG
Found at i:10631861 original size:19 final size:19
Alignment explanation
Indices: 10631837--10631968 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
10631827 AATTATATAT
10631837 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
10631856 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
10631875 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
10631894 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
10631915 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
10631934 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
10631953 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
10631969 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:10631921 original size:59 final size:59
Alignment explanation
Indices: 10631837--10631967 Score: 221
Period size: 59 Copynumber: 2.3 Consensus size: 59
10631827 AATTATATAT
*
10631837 TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
10631894 TCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTGCATATCATA
1 TCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATA
10631953 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
10631968 CCTCAAAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
57 11 0.16
59 58 0.84
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (59 bp):
TCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:10632390 original size:45 final size:44
Alignment explanation
Indices: 10632141--10632611 Score: 246
Period size: 44 Copynumber: 10.8 Consensus size: 44
10632131 AGTGCCATCT
* * *
10632141 TTAGTCTGCCTCACTGCAACTTCA-GGACGATAAGACTTGCTTAT
1 TTAGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCATAC
* ** *
10632185 TTAGTCTACTTCACTGCAACTTCAGGGAGATAAGA-TTAG-ATGC
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTT-GCATAC
* * * * * * *
10632228 -GA-TCTG-CTCTCTGCAACTTCAGAGAGATAAGATCTAAG-GT-T
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGA-CT-TGCATAC
* * * * *
10632269 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TT--ATCGGC
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCAT--AC
* * * *
10632312 TTTAATCTACTCCACTACAACTTCAGGGAGATAAGACTTGCCAT-C
1 -TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTG-CATAC
* *
10632357 TTCAGTCTGCCCCACTGTAACTTCA-GGAGGATAAGACTTGCTTAC
1 TT-AGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCATAC
* * *
10632402 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-ATGC
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCATAC
* * * ** * * *
10632445 -GA-TCTG-CTCTCTGCAACTTCAAAGAGATAAGATCTAAG-GT-T
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGA-CT-TGCATAC
* * * *
10632486 TTAATCCGCTCCACTGCAACTTTAGGGAGATAAGACTTGCCAT-C
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTG-CATAC
* * * *
10632530 TTCAGTCTGCCCTACTACAACTTGA-GGAGGATAAGACTTGCTTAC
1 TT-AGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCATAC
* *
10632575 TTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACT
1 TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACT
10632612 AGATGCGATC
Statistics
Matches: 325, Mismatches: 71, Indels: 62
0.71 0.16 0.14
Matches are distributed among these distances:
40 45 0.14
41 8 0.02
42 11 0.03
43 13 0.04
44 173 0.53
45 73 0.22
48 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCATAC
Found at i:10632414 original size:89 final size:89
Alignment explanation
Indices: 10632321--10632611 Score: 339
Period size: 89 Copynumber: 3.3 Consensus size: 89
10632311 CTTTAATCTA
* *
10632321 CTCCACTACAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGTAACTTCAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAG
10632386 GATAAGACTTGCTTACTTAGTCTG
66 GATAAGACTTGCTTACTTAGTCTG
* * * * *
10632410 CTCCACTGCAACTTCAGGGAGATAAGATTTG--A--TGC-GATCTG-CTCTCTGCAACTTCA-AA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG-TCTGCCCCACTGCAACTTCAGGA
* * * *
10632468 GAGATAAGATCTAAGGTT--TTAATCCG
65 G-GATAAGA-CT-TGCTTACTTAGTCTG
* * * *
10632494 CTCCACTGCAACTTTAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCTACTACAACTTGAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAG
10632559 GATAAGACTTGCTTACTTAGTCTG
66 GATAAGACTTGCTTACTTAGTCTG
*
10632583 CTCCACTGCAACTTCAGGGAAATAAGACT
1 CTCCACTGCAACTTCAGGGAGATAAGACT
10632612 AGATGCGATC
Statistics
Matches: 163, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
83 2 0.01
84 55 0.34
85 8 0.05
86 4 0.02
87 4 0.02
88 8 0.05
89 80 0.49
90 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (89 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAG
GATAAGACTTGCTTACTTAGTCTG
Found at i:10632504 original size:84 final size:84
Alignment explanation
Indices: 10632409--10632690 Score: 320
Period size: 84 Copynumber: 3.3 Consensus size: 84
10632399 TACTTAGTCT
*
10632409 GCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
10632474 AGATCTAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
* * * * * *
10632493 GCTCCACTGCAACTTTAGGGAGATAAGACTTGCCAT-CTTCAGTCTGCCCTACTACAACTT-GAG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTG--ATGC--GA-TCTGCTCT-CTGCAACTTCAAA
* * * *
10632556 GAGGATAAGA-CT-TGCTTACTTAGTCT
60 GA-GATAAGATCTAAGGTT--TTAATCC
* * *
10632582 GCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
10632647 AGATCTAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
*
10632666 ACTCCACTGCAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
10632691 GGATCTACAA
Statistics
Matches: 159, Mismatches: 26, Indels: 26
0.75 0.12 0.12
Matches are distributed among these distances:
84 73 0.46
85 12 0.08
86 6 0.04
87 6 0.04
88 13 0.08
89 49 0.31
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATA
AGATCTAAGGTTTTAATCC
Found at i:10632583 original size:217 final size:216
Alignment explanation
Indices: 10632133--10632600 Score: 681
Period size: 217 Copynumber: 2.2 Consensus size: 216
10632123 TAGGAATTAG
* * *
10632133 TGCCATCTTTAGTCTGCCTCACTGCAACTTCAGGACGATAAGACTTGCTTATTTAGTCTACTTCA
1 TGCCATC-TTAGTCTGCCCCACTGCAACTTCAGGACGATAAGACTTGCTTACTTAGTCTACTCCA
*
10632198 CTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
65 CTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAAGATCT
* * * *
10632263 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACT
130 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTACTCCACT
10632328 ACAACTTCAGGGAGATAAGACT
195 ACAACTTCAGGGAGATAAGACT
* * *
10632350 TGCCATCTTCAGTCTGCCCCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTT-AGTCTGCCCCACTGCAACTTCAGGACGATAAGACTTGCTTACTTAGTCTACTCCA
*
10632415 CTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAAGATCT
65 CTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAAGATCT
* * * * *
10632480 AAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAAGACTTGCCATCTTCAGTCTGC-CCTA
130 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTACCAGCTTCAATCTACTCC-A
*
10632544 CTACAACTTGA-GGAGGATAAGACT
193 CTACAACTTCAGGGA-GATAAGACT
* *
10632568 TG-CTTACTTAGTCTGCTCCACTGCAACTTCAGG
1 TGCCAT-CTTAGTCTGCCCCACTGCAACTTCAGG
10632601 GAAATAAGAC
Statistics
Matches: 225, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
216 2 0.01
217 187 0.83
218 36 0.16
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (216 bp):
TGCCATCTTAGTCTGCCCCACTGCAACTTCAGGACGATAAGACTTGCTTACTTAGTCTACTCCAC
TGCAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAAGATCTA
AGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTACTCCACTA
CAACTTCAGGGAGATAAGACT
Found at i:10632678 original size:217 final size:217
Alignment explanation
Indices: 10632133--10632697 Score: 565
Period size: 217 Copynumber: 2.6 Consensus size: 217
10632123 TAGGAATTAG
* * * * * * * *
10632133 TGCCATCTTTAGTCTGCCTCACTGCAACTTCAGGACG-ATAAGACTTGCTTATTTAGTCTACTTC
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGA-GAATAAGACTAGCATACTGAGTCTGCTCC
* * * ** *
10632197 ACTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATC
65 ACTGCAACTTCAGAGAGATAAGATTGGATGCAATCCACTCACTGCAACTTCAGAGAGATAAGATC
* * * *
10632262 TAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCAC
130 TAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTACTCCAC
10632327 TACAACTTCAGGGAGATAAGACT
195 TACAACTTCAGGGAGATAAGACT
* * * * *
10632350 TGCCATCTTCAGTCTGCCCCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGAATAAGACTAGCATACTGAGTCTGCTCCA
* * * ** * *
10632415 CTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAAGATCT
66 CTGCAACTTCAGAGAGATAAGATTGGATGCAATCCACTCACTGCAACTTCAGAGAGATAAGATCT
* * * * *
10632480 AAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAAGACTTGCCATCTTCAGTCTGC-CCTA
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTACCAGCTTCAATCTACTCC-A
*
10632544 CTACAACTTGA-GGAGGATAAGACT
194 CTACAACTTCAGGGA-GATAAGACT
* * *
10632568 TG-CTTACTT-AGTCTGCTCCACTGCAACTTCAGG-GAAATAAGACTAG-ATGC-GA-TCTGCT-
1 TGCCAT-CTTCAGTCTGCCCCACTGCAACTTCAGGAG-AATAAGACTAGCATACTGAGTCTGCTC
* * ** *
10632626 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
64 CACTGCAACTTCAGAGAGATAAGAT-T--GGATGCAATCCACT-CACTGCAACTTCAGAGAGATA
*
10632691 GGATCTA
125 AGATCTA
10632698 CAATCTTCAA
Statistics
Matches: 299, Mismatches: 39, Indels: 20
0.84 0.11 0.06
Matches are distributed among these distances:
213 23 0.08
214 7 0.02
215 1 0.00
216 11 0.04
217 221 0.74
218 36 0.12
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGAATAAGACTAGCATACTGAGTCTGCTCCA
CTGCAACTTCAGAGAGATAAGATTGGATGCAATCCACTCACTGCAACTTCAGAGAGATAAGATCT
AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTACTCCACT
ACAACTTCAGGGAGATAAGACT
Found at i:10632706 original size:173 final size:173
Alignment explanation
Indices: 10632282--10632690 Score: 658
Period size: 173 Copynumber: 2.4 Consensus size: 173
10632272 ATCCGCTCCA
* * * * * *
10632282 CTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
1 CTGCAACTTCAGAGAGATAAGATCTA-AGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAA
**
10632346 GACTTGCCATCTTCAGTCTGCCCCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGC
65 GACTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGC
* * *
10632411 TCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCT
130 TCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCT
* * *
10632455 CTGCAACTTCAAAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAG
* *
10632520 ACTTGCCATCTTCAGTCTGCCCTACTACAACTTGAGGAGGATAAGACTTGCTTACTTAGTCTGCT
66 ACTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
10632585 CCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCT
131 CCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCT
10632628 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
10632691 GGATCTACAA
Statistics
Matches: 216, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
173 214 0.99
174 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (173 bp):
CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAG
ACTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
CCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCT
Found at i:10632818 original size:132 final size:132
Alignment explanation
Indices: 10632682--10633334 Score: 1092
Period size: 132 Copynumber: 4.9 Consensus size: 132
10632672 CTGCAACTTC
* *
10632682 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTAGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
10632747 TTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATCCACCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
10632812 TT
131 TT
10632814 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* * * * *
10632879 TTAAATCTTCTTCTCACTATCTTGGAAAGATAATATCTGCCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
10632944 TT
131 TT
* * *
10632946 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGGCAAGGTTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
10633011 TTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
10633076 TT
131 TT
*
10633078 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
10633143 TTAAATCAT-CTTCCCACTATCTTGGAAAGATAATATCCGCCGTCTTCGATCTGCTCCACTACTG
66 TTAAATC-TGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTG
10633207 CTT
130 CTT
* * *
10633210 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAAGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* * *
10633275 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTCGTCTTCGATCTGATCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
10633335 GTCAATGCAG
Statistics
Matches: 485, Mismatches: 34, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 483 1.00
133 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:10632837 original size:44 final size:44
Alignment explanation
Indices: 10632774--10633252 Score: 162
Period size: 44 Copynumber: 10.9 Consensus size: 44
10632764 TATCTTGGAA
* * *
10632774 AGATAAGATCCACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
10632818 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
10632862 AGACAAG-GCT-TGGTGGCTTAAATCTTCTTCTCACTA-T-CTT-GGAA
1 AGATAAGATCTACAGT--CTTCAATCTGC-TC-CACTACTGCTTAGG-G
* * * **
10632906 AGATAATATCTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
10632950 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * *** * * *
10632994 AGGCAAGGTTTGGTGGCTTAAATCTGCTTCCTACTA-T-CTT-GGAA
1 AGATAAGATCTACAGTCTTCAATCTGC-TCC-ACTACTGCTTAGG-G
* * *
10633038 AGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCT-ACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * *
10633082 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTG-TTGAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTT-AGGG
* * ** * *
10633126 AGACAAG-GCT-TGGTGGCTTAAATCAT-CTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACAGT--CTTCAATC-TGC-T-CCACTACTGCTTAGG-G
* ** * *
10633170 AGATAATATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
10633214 AGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCT
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCT
10633253 CAAGGAGACA
Statistics
Matches: 302, Mismatches: 101, Indels: 64
0.65 0.22 0.14
Matches are distributed among these distances:
42 17 0.06
43 23 0.08
44 227 0.75
45 22 0.07
46 13 0.04
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:10634588 original size:17 final size:17
Alignment explanation
Indices: 10634563--10634596 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10634553 GGCCTCTCCA
10634563 TTTTCTTTTATTTTTTG
1 TTTTCTTTTATTTTTTG
* *
10634580 TTTTTTTTTGTTTTTTG
1 TTTTCTTTTATTTTTTG
10634597 AATCTGAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (17 bp):
TTTTCTTTTATTTTTTG
Found at i:10637172 original size:14 final size:14
Alignment explanation
Indices: 10637153--10637204 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 14
10637143 TGTATTTATT
10637153 AATGCATATGAAAC
1 AATGCATATGAAAC
*
10637167 AATGCAATGCATGAAATG
1 AATGC-AT--ATGAAA-C
10637185 AATGCATATGAAAC
1 AATGCATATGAAAC
10637199 AATGCA
1 AATGCA
10637205 CTGCATGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 11 0.34
15 8 0.25
17 8 0.25
18 5 0.16
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (14 bp):
AATGCATATGAAAC
Found at i:10637177 original size:19 final size:19
Alignment explanation
Indices: 10637153--10637210 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
10637143 TGTATTTATT
10637153 AATGCATATGAAACAATGC
1 AATGCATATGAAACAATGC
10637172 AATGC--ATG--A-AATG-
1 AATGCATATGAAACAATGC
10637185 AATGCATATGAAACAATGC
1 AATGCATATGAAACAATGC
*
10637204 ACTGCAT
1 AATGCAT
10637211 GGAATGAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
13 5 0.16
14 4 0.12
15 4 0.12
17 4 0.12
18 4 0.12
19 11 0.34
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (19 bp):
AATGCATATGAAACAATGC
Found at i:10637190 original size:18 final size:18
Alignment explanation
Indices: 10637167--10637222 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
10637157 CATATGAAAC
10637167 AATGCAATGCATGAAATG
1 AATGCAATGCATGAAATG
*
10637185 AATGC-AT--ATGAAA-C
1 AATGCAATGCATGAAATG
* *
10637199 AATGCACTGCATGGAATG
1 AATGCAATGCATGAAATG
10637217 AATGCA
1 AATGCA
10637223 GAAAAGGCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
17 7 0.23
18 11 0.37
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.21
Consensus pattern (18 bp):
AATGCAATGCATGAAATG
Found at i:10637190 original size:32 final size:32
Alignment explanation
Indices: 10637153--10637222 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
10637143 TGTATTTATT
10637153 AATGCATATGAAACAATGCAATGCATGAAATG
1 AATGCATATGAAACAATGCAATGCATGAAATG
* *
10637185 AATGCATATGAAACAATGCACTGCATGGAATG
1 AATGCATATGAAACAATGCAATGCATGAAATG
10637217 AATGCA
1 AATGCA
10637223 GAAAAGGCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.21
Consensus pattern (32 bp):
AATGCATATGAAACAATGCAATGCATGAAATG
Found at i:10640506 original size:98 final size:98
Alignment explanation
Indices: 10640337--10640531 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
10640327 ATACAATAAA
*
10640337 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
10640402 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
* *
10640435 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
* *
10640500 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTT
10640532 CATGATTTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
Found at i:10642038 original size:19 final size:19
Alignment explanation
Indices: 10642014--10642105 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
10642004 AATCATATAT
*
10642014 TCTAAGATTGCATATCATA
1 TCTAAGATTGTATATCATA
*
10642033 TCTAAGATTATATATCATA
1 TCTAAGATTGTATATCATA
10642052 TCTAAGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
10642071 TCTAGGATTGTATATCATA
1 TCTAAGATTGTATATCATA
*
10642090 TCTAAGATTGCATATC
1 TCTAAGATTGTATATC
10642106 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGTATATCATA
Found at i:10643133 original size:60 final size:59
Alignment explanation
Indices: 10643058--10643191 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 59
10643048 CCTAAATATA
*** * * * *
10643058 AAAAATTCAACAAATTAAGCCCTTGGCGTTTACATAATTTGTTATTTTAGTTTGAATTCT
1 AAAAATTCAA-AAATTAAGCCCTCAACGTTTACAAAATTTATCAATTTAGTTTGAATTCT
* * * *
10643118 AAAAATTCAATAAATTTATCCCTCAATGTTTACAAAATTTATCAATTTAGTTTTAATTCT
1 AAAAATTCAA-AAATTAAGCCCTCAACGTTTACAAAATTTATCAATTTAGTTTGAATTCT
*
10643178 AAAATTTCAAAAAT
1 AAAAATTCAAAAAT
10643192 AGGGTAAAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
59 4 0.07
60 57 0.93
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.41
Consensus pattern (59 bp):
AAAAATTCAAAAATTAAGCCCTCAACGTTTACAAAATTTATCAATTTAGTTTGAATTCT
Found at i:10643953 original size:61 final size:61
Alignment explanation
Indices: 10643874--10643999 Score: 162
Period size: 61 Copynumber: 2.1 Consensus size: 61
10643864 TATTTTTAAC
* * * * ** *
10643874 TTTTAGAATTAGAACTAAATTGAAAAATTTTGTAAATGTTGGGGGCTAAATTTATTGAATT
1 TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
* * *
10643935 TTTTAGAACTAAAACTAAAATGACAACTTTTATAAACATTGAGGGCTAAATTTGTTGAATT
1 TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
10643996 TTTT
1 TTTT
10644000 GGATTTAGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (61 bp):
TTTTAGAACTAAAACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAATTTATTGAATT
Found at i:10644367 original size:11 final size:12
Alignment explanation
Indices: 10644337--10644370 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
10644327 CAGCTAACCC
10644337 ATATTAATTTTT
1 ATATTAATTTTT
10644349 ATATTAATTTTT
1 ATATTAATTTTT
10644361 ATA-TAATTTT
1 ATATTAATTTT
10644371 AATTATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:10658417 original size:36 final size:36
Alignment explanation
Indices: 10658365--10658455 Score: 128
Period size: 36 Copynumber: 2.5 Consensus size: 36
10658355 ACATCGATAT
*
10658365 TCCAACCGAAACACACCAGATGCTCATAAGAGCTAA
1 TCCAACCGAAACACACCAGATGCTCATAAGAGCCAA
* * *
10658401 TCCATCCGAAACACACCAGATGCTCATACGAGCCAG
1 TCCAACCGAAACACACCAGATGCTCATAAGAGCCAA
*
10658437 TCCACCCGATAACACACCA
1 TCCAACCGA-AACACACCA
10658456 ATGGCTCCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 40 0.82
37 9 0.18
ACGTcount: A:0.37, C:0.36, G:0.13, T:0.13
Consensus pattern (36 bp):
TCCAACCGAAACACACCAGATGCTCATAAGAGCCAA
Found at i:10659846 original size:15 final size:15
Alignment explanation
Indices: 10659826--10659856 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10659816 TATAGATGCC
10659826 ACAATAACAAATACA
1 ACAATAACAAATACA
*
10659841 ACAATAATAAATACA
1 ACAATAACAAATACA
10659856 A
1 A
10659857 TAATGGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAATAACAAATACA
Found at i:10660014 original size:17 final size:20
Alignment explanation
Indices: 10659976--10660011 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
10659966 AACATAAGTC
10659976 AATAAACAAATGAAAGAAAT
1 AATAAACAAATGAAAGAAAT
10659996 AATAAA-AAAT-AAAGAA
1 AATAAACAAATGAAAGAA
10660012 TAAAGATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.38
19 4 0.25
20 6 0.38
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (20 bp):
AATAAACAAATGAAAGAAAT
Found at i:10660401 original size:6 final size:7
Alignment explanation
Indices: 10660363--10660424 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
10660353 ACATAGATTT
10660363 AAATAAA
1 AAATAAA
*
10660370 ATAATTAA
1 A-AATAAA
*
10660378 ATATGAAA
1 AAAT-AAA
10660386 AAATAAAA
1 AAAT-AAA
10660394 AAATAAA
1 AAATAAA
10660401 AAATAAA
1 AAATAAA
* *
10660408 AATTAAT
1 AAATAAA
*
10660415 TAATAAA
1 AAATAAA
10660422 AAA
1 AAA
10660425 ACTAATTTGA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 24 0.57
8 18 0.43
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.23
Consensus pattern (7 bp):
AAATAAA
Found at i:10660407 original size:29 final size:31
Alignment explanation
Indices: 10660363--10660425 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
10660353 ACATAGATTT
*
10660363 AAATAAAATAATTAAATATGAAAAAATAAAA
1 AAATAAAATAATTAAAAATGAAAAAATAAAA
* **
10660394 AAATAAAA-AA-TAAAAATTAATTAATAAAA
1 AAATAAAATAATTAAAAATGAAAAAATAAAA
10660423 AAA
1 AAA
10660426 CTAATTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 18 0.64
30 2 0.07
31 8 0.29
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (31 bp):
AAATAAAATAATTAAAAATGAAAAAATAAAA
Found at i:10660409 original size:23 final size:23
Alignment explanation
Indices: 10660363--10660409 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10660353 ACATAGATTT
* * * *
10660363 AAATAAAATAATTAAATATGAAA
1 AAATAAAAAAATAAAAAATAAAA
10660386 AAATAAAAAAATAAAAAATAAAA
1 AAATAAAAAAATAAAAAATAAAA
10660409 A
1 A
10660410 TTAATTAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (23 bp):
AAATAAAAAAATAAAAAATAAAA
Found at i:10662164 original size:50 final size:50
Alignment explanation
Indices: 10662110--10662290 Score: 130
Period size: 50 Copynumber: 3.6 Consensus size: 50
10662100 ACTAGGGAGA
**
10662110 TAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAG
1 TAAGATTCACCGTCGTGGCTTCAATCTGCTCAACTACAACGCCAGGGAAG
* * * * * ** * * * * ** *
10662160 TAAGACTCTCAGTCGCGGCTTCAGTCTTTTAAATTGCAATG-TTGAGGAAA
1 TAAGATTCACCGTCGTGGCTTCAATCTGCTCAACTACAACGCCAG-GGAAG
* ** * * * *
10662210 TGAGATTCACCGTCGTAACTTCAATCTGTTCTACTATACCGCCAGGGAAG
1 TAAGATTCACCGTCGTGGCTTCAATCTGCTCAACTACAACGCCAGGGAAG
*
10662260 TAAGATTCACTGTCGTGGCTTCAATCTGCTC
1 TAAGATTCACCGTCGTGGCTTCAATCTGCTC
10662291 TACTGTAATG
Statistics
Matches: 89, Mismatches: 40, Indels: 4
0.67 0.30 0.03
Matches are distributed among these distances:
49 1 0.01
50 87 0.98
51 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (50 bp):
TAAGATTCACCGTCGTGGCTTCAATCTGCTCAACTACAACGCCAGGGAAG
Found at i:10662319 original size:267 final size:267
Alignment explanation
Indices: 10661844--10662468 Score: 908
Period size: 267 Copynumber: 2.3 Consensus size: 267
10661834 TTGAAATTCC
* * * * *
10661844 AAGATTCGCCGTCATAGCTTCAATTTGTTTCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
* * *
10661909 GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAACGAGATTCGCCGTTGTAGCTTCAATCTATTC
66 GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAACTTCAATCTATTC
* * * *
10661974 CACTACATCGCCAGGGAAGTAAGATTCACCGTCGTGGTTTTAATCTGCTCCACTGTAATGCTAAA
131 CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGATAAA
* *
10662039 GAGATAGGATTCGCTGCCCACAGCTTTAATCCACTCTACTTCAGCTAATCCAAACCTTAACACTA
196 CAGATAGGATTCGCTGCCCACAGCTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
10662104 GGGAGAT
261 GGGAGAT
* * *
10662111 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCTCAGTCGC
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
* *
10662176 GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAATGAGATTCACCGTCGTAACTTCAATCTGTTC
66 GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAACTTCAATCTATTC
* * * *
10662241 TACTATACCGCCAGGGAAGTAAGATTCACTGTCGTGGCTTCAATCTGCTCTACTGTAATGATAAA
131 CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGATAAA
** * *
10662306 CAGATAGGATTCGCTGCCCACAGCTTTAATCTGCTCCACTTCAGCTACTCCAAGCCTTAACACTA
196 CAGATAGGATTCGCTGCCCACAGCTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
10662371 GGGAGAT
261 GGGAGAT
** * * * * * *
10662378 AAGATTCGTTGTCGTGGCTTCAATCTGCTCCGCTACAATGCTAGGGAAATAAGATTCGCCGTTGT
1 AAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
* **
10662443 GGCTTCAATCTTTTCCATTGCAATGT
66 GGCTTCAGTCTTTTAAATTGCAATGT
10662469 CAAAGCGATA
Statistics
Matches: 317, Mismatches: 41, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
267 317 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (267 bp):
AAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAACGAGATTCACCGTCGTAACTTCAATCTATTC
CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGATAAA
CAGATAGGATTCGCTGCCCACAGCTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
GGGAGAT
Found at i:10674371 original size:15 final size:15
Alignment explanation
Indices: 10674351--10674380 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10674341 ATAGATGTCG
10674351 CAATAACAAATACAA
1 CAATAACAAATACAA
*
10674366 CAATAATAAATACAA
1 CAATAACAAATACAA
10674381 TAATGGCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (15 bp):
CAATAACAAATACAA
Found at i:10674538 original size:17 final size:20
Alignment explanation
Indices: 10674500--10674535 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
10674490 AACATAAGTC
10674500 AATAAACAAATGAAAGAAAT
1 AATAAACAAATGAAAGAAAT
10674520 AATAAA-AAAT-AAAGAA
1 AATAAACAAATGAAAGAA
10674536 TAAACAGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.38
19 4 0.25
20 6 0.38
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (20 bp):
AATAAACAAATGAAAGAAAT
Found at i:10674854 original size:25 final size:22
Alignment explanation
Indices: 10674801--10674860 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 22
10674791 ATATATAGAT
10674801 ATTAAAAAAATAATTACATAAA
1 ATTAAAAAAATAATTACATAAA
* * *
10674823 ATAAAAAATAATTACATTACATTAC
1 ATTAAAAA-AA-TA-ATTACATAAA
10674848 ATTAAAAAAATAA
1 ATTAAAAAAATAA
10674861 AAATGCGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
22 8 0.26
23 4 0.13
24 4 0.13
25 15 0.48
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (22 bp):
ATTAAAAAAATAATTACATAAA
Found at i:10674961 original size:7 final size:8
Alignment explanation
Indices: 10674933--10674960 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
10674923 ATTAAATATG
10674933 AAAAATGA
1 AAAAATGA
10674941 AAAAATGA
1 AAAAATGA
10674949 AAAAATGA
1 AAAAATGA
10674957 AAAA
1 AAAA
10674961 TAATTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAATGA
Found at i:10674983 original size:8 final size:7
Alignment explanation
Indices: 10674913--10674982 Score: 50
Period size: 8 Copynumber: 9.4 Consensus size: 7
10674903 ACATAGATTT
10674913 AAATAAA
1 AAATAAA
*
10674920 ATAATTAA
1 A-AATAAA
* *
10674928 ATATGAA
1 AAATAAA
10674935 AAATGAAA
1 AAAT-AAA
10674943 AAATGAAA
1 AAAT-AAA
*
10674951 AAATGAA
1 AAATAAA
*
10674958 AAATAAT
1 AAATAAA
*
10674965 TAATAAAA
1 AAAT-AAA
10674973 AAATAAA
1 AAATAAA
10674980 AAA
1 AAA
10674983 AACTGGGGCA
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
7 24 0.49
8 25 0.51
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (7 bp):
AAATAAA
Found at i:10679339 original size:22 final size:22
Alignment explanation
Indices: 10679305--10679357 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
10679295 CAAATTTGTG
* *
10679305 AAAATTTATTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
**
10679327 AAAATTCAATATATTAATAATT
1 AAAATTCAATATAAAAATAATT
* *
10679349 TAAGTTCAA
1 AAAATTCAA
10679358 GTTAATTATT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:10682922 original size:30 final size:30
Alignment explanation
Indices: 10682884--10683009 Score: 128
Period size: 30 Copynumber: 4.2 Consensus size: 30
10682874 TTAGTCCGAA
* * *
10682884 TGAG-AAATCTATTATATTGTCAGCTTGTA
1 TGAGCAAATCTATTATAATGACAGCTTGTG
** *
10682913 TGAGCAAATCTATTATAACAACAACTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
*
10682943 TGAGCAAATCCATTATAATGACAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
* * * * **
10682973 TGAGCAATTTTATCATACTGTTAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
10683003 TGAGCAA
1 TGAGCAA
10683010 TATATTAACC
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
29 4 0.05
30 75 0.95
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (30 bp):
TGAGCAAATCTATTATAATGACAGCTTGTG
Found at i:10690139 original size:12 final size:12
Alignment explanation
Indices: 10690122--10690146 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10690112 TAAATCACTC
10690122 TCTTTTTTTTTT
1 TCTTTTTTTTTT
10690134 TCTTTTTTTTTT
1 TCTTTTTTTTTT
10690146 T
1 T
10690147 GAGTGTGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:10697862 original size:50 final size:50
Alignment explanation
Indices: 10697747--10697939 Score: 273
Period size: 50 Copynumber: 3.8 Consensus size: 50
10697737 GATATTAACA
* ** *
10697747 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
10697798 TGTCC-ATGTCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
*
10697848 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGTACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
10697898 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGTACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10697940 TTACCCAAAT
Statistics
Matches: 130, Mismatches: 8, Indels: 9
0.88 0.05 0.06
Matches are distributed among these distances:
49 3 0.02
50 94 0.72
51 30 0.23
52 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:10708268 original size:7 final size:7
Alignment explanation
Indices: 10708256--10708282 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10708246 ATCATACAAA
10708256 AAAAAAG
1 AAAAAAG
10708263 AAAAAAG
1 AAAAAAG
10708270 AAAAAAG
1 AAAAAAG
10708277 AAAAAA
1 AAAAAA
10708283 TGGAAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:10710334 original size:2 final size:2
Alignment explanation
Indices: 10710327--10710356 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10710317 GGTTACAATC
10710327 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10710357 TTCATGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10715996 original size:39 final size:39
Alignment explanation
Indices: 10715953--10716073 Score: 131
Period size: 39 Copynumber: 3.1 Consensus size: 39
10715943 TTTATATAGA
10715953 TATAAAATATATAGATGCACATACATAAATATTTTATTT
1 TATAAAATATATAGATGCACATACATAAATATTTTATTT
* * * * ** * *
10715992 TATAATATATATACATTCATATA-ATTTATAATTTATAAT
1 TATAAAATATATAGATGCACATACATAAATATTTTAT-TT
10716031 T-T-AAATATATAGATGCACATACATAAATATTTTATTTT
1 TATAAAATATATAGATGCACATACATAAATATTTTA-TTT
10716069 TATAA
1 TATAA
10716074 TTCGTATTGT
Statistics
Matches: 61, Mismatches: 16, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
37 15 0.25
38 22 0.36
39 23 0.38
40 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (39 bp):
TATAAAATATATAGATGCACATACATAAATATTTTATTT
Found at i:10719230 original size:31 final size:31
Alignment explanation
Indices: 10719195--10719256 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10719185 TAAGCATAGC
10719195 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
1 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
10719226 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
1 TCTGAGAAAGTAAGATGTTAATTTTATTTAA
10719257 GTATAGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (31 bp):
TCTGAGAAAGTAAGATGTTAATTTTATTTAA
Found at i:10723708 original size:21 final size:21
Alignment explanation
Indices: 10723682--10723742 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
10723672 ACACACCAAT
*
10723682 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
*
10723703 AGAAGCTCAAAAGAGCTGAAT
1 AGAAGCTCAAAAGAGCTGAAC
* *
10723724 AGAAGCTTAAAAAAGCTGA
1 AGAAGCTCAAAAGAGCTGA
10723743 TCCACTAGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.48, C:0.15, G:0.23, T:0.15
Consensus pattern (21 bp):
AGAAGCTCAAAAGAGCTGAAC
Found at i:10725452 original size:21 final size:21
Alignment explanation
Indices: 10725426--10725467 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
10725416 GCTCTGAAGA
10725426 GCCATTAATTCACACCATTTT
1 GCCATTAATTCACACCATTTT
*
10725447 GCCATTAGTTCACACCATTTT
1 GCCATTAATTCACACCATTTT
10725468 ATCATCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.07, T:0.38
Consensus pattern (21 bp):
GCCATTAATTCACACCATTTT
Found at i:10732622 original size:50 final size:50
Alignment explanation
Indices: 10732523--10732926 Score: 544
Period size: 50 Copynumber: 8.0 Consensus size: 50
10732513 TGTGAGCCAG
* * * *
10732523 TGTAAGACCATGTTTGGGACACGACATTGGCATCATTGAGATTACGAGAGGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-T--GAGAGGTCCTA
*
10732579 TGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT-CTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCT-A
10732629 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
* *
10732679 TGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
* * *
10732729 TGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
* * *
10732779 TATAAGACCATGTCTTGGACATGGCATTGGCACTGAGATGAGAGGT-CTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCT-A
* *
10732829 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
* * *
10732879 TGTAAGACCATATCTGAGACATGGCGTTGGCACC-AGGATGAGAGGTCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATGAGAGGTCC
10732927 CAAAGAATGT
Statistics
Matches: 321, Mismatches: 22, Indels: 16
0.89 0.06 0.04
Matches are distributed among these distances:
49 4 0.01
50 278 0.87
51 3 0.01
52 1 0.00
53 5 0.02
55 1 0.00
56 29 0.09
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCTA
Found at i:10732927 original size:50 final size:50
Alignment explanation
Indices: 10732568--10732928 Score: 562
Period size: 50 Copynumber: 7.2 Consensus size: 50
10732558 TTGAGATTAC
* * *
10732568 GAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
10732618 GAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
10732668 GAGAGGTCCTATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
10732718 GAGAGGTCCTATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * * *
10732768 GAGAGGTCCCATATAAGACCATGTCTTGGACATGGCATTGGCACTGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
10732818 GAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
10732868 GAGAGGTCCCATGTAAGACCATATCTGAGACATGGCGTTGGCACC-AGGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GAT
10732918 GAGAGGTCCCA
1 GAGAGGTCCCA
10732929 AAGAATGTAT
Statistics
Matches: 287, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
49 1 0.00
50 286 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:10734165 original size:23 final size:23
Alignment explanation
Indices: 10734127--10734177 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
10734117 GGGAGAGAAA
* *
10734127 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
10734150 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
10734173 AGTAA
1 TGTAA
10734178 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:10738959 original size:24 final size:24
Alignment explanation
Indices: 10738931--10739010 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
10738921 CTGTATAACA
10738931 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCG
**
10738955 GGAAGCTCATGCGAGCCAATAA-CG
1 GGAAGCTCATAAGAGCC-ATAATCG
* **
10738979 GGTAGCTCCGAAGAGCCATTAAT-G
1 GGAAGCTCATAAGAGCCA-TAATCG
10739003 GGAAGCTC
1 GGAAGCTC
10739011 CGGATAGCCA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 1 0.02
24 40 0.89
25 4 0.09
ACGTcount: A:0.33, C:0.23, G:0.29, T:0.16
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:10739011 original size:24 final size:24
Alignment explanation
Indices: 10738931--10739032 Score: 82
Period size: 24 Copynumber: 4.2 Consensus size: 24
10738921 CTGTATAACA
**
10738931 GGAAGCTCATAAGAGCCA-TAATCG
1 GGAAGCTCCGAAGAGCCATTAAT-G
* * * *
10738955 GGAAGCTCATG-CGAGCCAATAACG
1 GGAAGCTC-CGAAGAGCCATTAATG
*
10738979 GGTAGCTCCGAAGAGCCATTAATG
1 GGAAGCTCCGAAGAGCCATTAATG
* *
10739003 GGAAGCTCCGGATAGCCATATAATG
1 GGAAGCTCCGAAGAGCCAT-TAATG
10739028 GGAAG
1 GGAAG
10739033 TTCAAGCGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
23 1 0.02
24 48 0.77
25 13 0.21
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (24 bp):
GGAAGCTCCGAAGAGCCATTAATG
Found at i:10740431 original size:18 final size:18
Alignment explanation
Indices: 10740391--10740431 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
10740381 TTAATCTTTG
10740391 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
10740408 AGTTATTTATTTTAATTTT
1 ATTTATTTATTTT-ATTTT
10740427 -TTTAT
1 ATTTAT
10740432 CTGACTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:10756473 original size:57 final size:58
Alignment explanation
Indices: 10756371--10756496 Score: 184
Period size: 58 Copynumber: 2.2 Consensus size: 58
10756361 GAATAAAAAT
*
10756371 AATGAAAATGGAGAAATGATAAATATTTGGAAATAATTATAG-TTTTCTTCAAAATGAA
1 AATGAAAATGGAGAAATGA-AAATATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
* * *
10756429 AATGAAAATGGATAAATG-AAATCATTTGGAAATGATTATGGTTTTTCTCCAAAATGAA
1 AATGAAAATGGAGAAATGAAAAT-ATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
10756487 AATGAAAATG
1 AATGAAAATG
10756497 ACCTGGAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
56 4 0.06
57 16 0.26
58 42 0.68
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.32
Consensus pattern (58 bp):
AATGAAAATGGAGAAATGAAAATATTTGGAAATAATTATAGTTTTTCTCCAAAATGAA
Found at i:10767897 original size:247 final size:247
Alignment explanation
Indices: 10767456--10767958 Score: 961
Period size: 247 Copynumber: 2.0 Consensus size: 247
10767446 TTATTTACCA
*
10767456 AAATGATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
1 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
* *
10767521 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGGGATTTAATGAAGCA
66 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGAAACA
10767586 ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
131 ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
10767651 CTTTTTAATATTTTGATCTATTTGCATATATGATCCTTTTGAAATTAAATTT
196 CTTTTTAATATTTTGATCTATTTGCATATATGATCCTTTTGAAATTAAATTT
10767703 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
1 AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
*
10767768 TGTTGTCATTGGCGGCATAGGATTAAATTGTAATTATATAAAATGTTTAGAGATTTAATGAAACA
66 TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGAAACA
*
10767833 ATTACCCTTTTTAGATTGAATAAAAAAAAGTTGCCCCAACCCTACTCGCGACACCCAATTAAAAG
131 ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
10767898 CTTTTTAATATTTTGATCTATTTGCATATATGATCCTTTTGAAATTAAATTT
196 CTTTTTAATATTTTGATCTATTTGCATATATGATCCTTTTGAAATTAAATTT
10767950 AAATAATCC
1 AAATAATCC
10767959 TTACCAAATA
Statistics
Matches: 251, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
247 251 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (247 bp):
AAATAATCCACTTGCAAAATCATGTACGAAAATGATCCATTTTGAAAAGTGAACCTCGGTGCTAC
TGTTGTCATTGGCGGCATAGGATTAAAATGTAATTATATAAAATGTTTAGAGATTTAATGAAACA
ATTACCCTTTTTAGATTGAATAAAAAAAAGTGGCCCCAACCCTACTCGCGACACCCAATTAAAAG
CTTTTTAATATTTTGATCTATTTGCATATATGATCCTTTTGAAATTAAATTT
Found at i:10777035 original size:18 final size:19
Alignment explanation
Indices: 10776997--10777041 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
10776987 GAAGAATAAG
*
10776997 TGAAATATAGTGTGAAAAT
1 TGAAATATAATGTGAAAAT
*
10777016 TGAAATTTAATGTG-AAAT
1 TGAAATATAATGTGAAAAT
10777034 TGAAATAT
1 TGAAATAT
10777042 GTAAAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.36
Consensus pattern (19 bp):
TGAAATATAATGTGAAAAT
Found at i:10778737 original size:28 final size:28
Alignment explanation
Indices: 10778679--10778749 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
10778669 ATGGCCTGGC
*
10778679 CACATGGGCGTGTGTCACACATGCAACA
1 CACATGGGCGTGTGTCACACAGGCAACA
10778707 CACATGGGCGTGTGTCACACACGGGCAACA
1 CACATGGGCGTGTGTCACACA--GGCAACA
* *
10778737 CATATGGACGTGT
1 CACATGGGCGTGT
10778750 AACCCAAGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 21 0.55
30 17 0.45
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (28 bp):
CACATGGGCGTGTGTCACACAGGCAACA
Found at i:10780784 original size:18 final size:19
Alignment explanation
Indices: 10780761--10780801 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
10780751 ATGTTAAATT
10780761 TGAATA-TTTTTTTTCTAA
1 TGAATATTTTTTTTTCTAA
10780779 TGAATATTTTTTTTTCTAA
1 TGAATATTTTTTTTTCTAA
10780798 TGAA
1 TGAA
10780802 ACAACATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (19 bp):
TGAATATTTTTTTTTCTAA
Found at i:10781286 original size:16 final size:16
Alignment explanation
Indices: 10781265--10781363 Score: 128
Period size: 16 Copynumber: 6.2 Consensus size: 16
10781255 TGAATTATTG
*
10781265 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
*
10781281 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
10781297 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
10781313 ATTATAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
*
10781329 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
* *
10781345 ATTATAGCCCTATTCC
1 ATTACAGCTCTATTCC
10781361 ATT
1 ATT
10781364 CCAGTGAACC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
15 1 0.01
16 70 0.97
17 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:10781301 original size:32 final size:32
Alignment explanation
Indices: 10781265--10781363 Score: 153
Period size: 32 Copynumber: 3.1 Consensus size: 32
10781255 TGAATTATTG
* * *
10781265 ATTACAGCTCTATTACATTACAGCTTTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
10781297 ATTACAGCTCTATTCCATTATAGCCTTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
* *
10781329 ATTACAACTCTATTCCATTATAGCCCTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
10781361 ATT
1 ATT
10781364 CCAGTGAACC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.27, C:0.27, G:0.05, T:0.40
Consensus pattern (32 bp):
ATTACAGCTCTATTCCATTATAGCCTTATTCC
Found at i:10781449 original size:17 final size:17
Alignment explanation
Indices: 10781429--10781477 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
10781419 AAATCCACTC
*
10781429 AAGTTAAAAATTTTTTT
1 AAGTTCAAAATTTTTTT
* * *
10781446 AAGTTCGAAATATTCTT
1 AAGTTCAAAATTTTTTT
10781463 AAGTTCAAAATTTTT
1 AAGTTCAAAATTTTT
10781478 CAAAACTTCA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (17 bp):
AAGTTCAAAATTTTTTT
Found at i:10784244 original size:291 final size:291
Alignment explanation
Indices: 10783715--10784264 Score: 841
Period size: 291 Copynumber: 1.9 Consensus size: 291
10783705 ACTCAGTTCT
**
10783715 TCATTGATTTGTTGGTTTTTGACTATTTCTTTAGTAACTGAATCGAAATATGAATTTGTATTGTT
1 TCATTGATTTGTTGGTCATTGACTATTTCTTTAGTAACTGAATCGAAATATGAATTTGTATTGTT
* * *
10783780 GACATAAGCGAGGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATTACTACTACAACAAAA
66 GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACAACAAAA
* * * *
10783845 CAACTTGTCTGTTTTGAAATATTGACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
131 CAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
* * **
10783910 GGAAAAATTTAATCCCATAAATGAAAATTAATTCACTTGGAGAAACATATCTTAAGAATCAGATA
196 GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCCAAAGAATCAGATA
10783975 TCCTAAAAAATATCTAACATTTAAGATATAC
261 TCCTAAAAAATATCTAACATTTAAGATATAC
10784006 TCATTGATTTGTTGGTCATTGACTATTTCTTT-GATAACTGAATCGAAATATGAATTTGTATTGT
1 TCATTGATTTGTTGGTCATTGACTATTTCTTTAG-TAACTGAATCGAAATATGAATTTGTATTGT
* * * * **
10784070 TGACATATGTAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTTCTATCACTACTATGACAAA
65 TGACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACAACAAA
* * *
10784135 ATAACTTGTCTGCTTTAAAAGGTTCACAATTTATTGAAATAAATCTTTGGATTGTGATGATGTCG
130 ACAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCG
** * * *
10784200 TGGAATGATATAATCCTATCAATGAAGATTAATTCACATGGAGAAACATATCCAAAGAATCAGAT
195 TGGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCCAAAGAATCAGAT
10784265 CAGATCGATT
Statistics
Matches: 231, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
290 1 0.00
291 230 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (291 bp):
TCATTGATTTGTTGGTCATTGACTATTTCTTTAGTAACTGAATCGAAATATGAATTTGTATTGTT
GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACAACAAAA
CAACTTGTCTGCTTTAAAAGATTCACAATTTATTGAAATAAATCTTTGGAATGTGATGATGTCGT
GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGGAGAAACATATCCAAAGAATCAGATA
TCCTAAAAAATATCTAACATTTAAGATATAC
Found at i:10785567 original size:22 final size:22
Alignment explanation
Indices: 10785542--10785583 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
10785532 TATTTGAATT
10785542 TTTTATATTCAATAACAAATCA
1 TTTTATATTCAATAACAAATCA
* *
10785564 TTTTTTATTCAATAATAAAT
1 TTTTATATTCAATAACAAAT
10785584 GTATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTATATTCAATAACAAATCA
Found at i:10790804 original size:4 final size:4
Alignment explanation
Indices: 10790795--10790819 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10790785 GTTGTTCTGT
10790795 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
10790820 ATGTTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:10796960 original size:44 final size:43
Alignment explanation
Indices: 10796897--10797564 Score: 289
Period size: 44 Copynumber: 14.9 Consensus size: 43
10796887 CATCATGGCG
* * *
10796897 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * *
10796940 TAATCTTA-CCCCTCTGAAGTTGCAAT-GAGGCAGGTTAAA-ATTAC
1 -AATCTTATCTCC-CTGAAGTTGCAGTGGA-GCAGATTAAAGA-TAC
* *
10796984 AAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * * *
10797029 AAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * *
10797073 AAGTCTTATCTCCCTGAAGTTGCA--GGAGTAGACTAAAGATAATG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-A-C
* * * * * *
10797117 AATCTTATTTCCCTAAAGTCGCAGTGGAACAGATTGAAGCTATAAATTAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--A---A-AGA-TAC
* * * * * *
10797167 AGATCTTATCTCTCTGAAATTGTAGTAGAGCAGA-T-CATAT-C
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * *
10797208 AAGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C
* * ** * *
10797253 GAATCTTATTTCCCTGAAGTCGCAGCAGAACAGATTGAAGCTATAAATTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--A---A-AGA-TAC
* * * * *
10797304 GGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CATAT-C
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * *
10797345 AAACCTTATCTCCCTGAAGTTGCAGTGGATCAGATTGAAGACCGGCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-A---GATAC
* * * **
10797394 AAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGCCAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * * * * *
10797438 GAACCTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAG-TAAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-AC
* * * * * *
10797482 AAACCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
* * * *
10797526 TAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
10797565 ACGATGAATC
Statistics
Matches: 468, Mismatches: 111, Indels: 90
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.00
41 55 0.12
42 15 0.03
43 35 0.07
44 179 0.38
45 76 0.16
46 4 0.01
47 2 0.00
48 3 0.01
49 32 0.07
50 5 0.01
51 58 0.12
52 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC
Found at i:10797154 original size:87 final size:88
Alignment explanation
Indices: 10796981--10797155 Score: 226
Period size: 87 Copynumber: 2.0 Consensus size: 88
10796971 AGGTTAAAAT
* *
10796981 TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCAAACCTTATCTCCCTGA
1 TACAAGTCTTATCTCCCTGAAGTTGCAG-GGAACAGACTAAAGATAACAAACCTTATCTCCCTAA
* * *
10797046 AGTTGCAGTAGAGCAGGTTGAAGA
65 AGTCGCAGTAGAACAGATTGAAGA
** ** * *
10797070 TACAAGTCTTATCTCCCTGAAGTTGCA-GGAGTAGACTAAAGATAATGAATCTTATTTCCCTAAA
1 TACAAGTCTTATCTCCCTGAAGTTGCAGGGAACAGACTAAAGATAACAAACCTTATCTCCCTAAA
*
10797134 GTCGCAGTGGAACAGATTGAAG
66 GTCGCAGTAGAACAGATTGAAG
10797156 CTATAAATTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
87 47 0.64
89 27 0.36
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (88 bp):
TACAAGTCTTATCTCCCTGAAGTTGCAGGGAACAGACTAAAGATAACAAACCTTATCTCCCTAAA
GTCGCAGTAGAACAGATTGAAGA
Found at i:10797385 original size:137 final size:137
Alignment explanation
Indices: 10797033--10797373 Score: 488
Period size: 137 Copynumber: 2.5 Consensus size: 137
10797023 GATAGCAAAC
* * * *
10797033 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGATACAAGTCTTATCTCCCTGAAGTTGCA-
1 CTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-CATAT-CAAGTCTTATCTCCCTGAAGTTGCAG
* * **
10797097 -GGAGTAGACTAAAGATAATGAATCTTATTTCCCTAAAGTCGCAGTGGAACAGATTGAAGCTATA
63 TGGAGTAGACTGAAGATAACGAATCTTATTTCCCTAAAGTCGCAGCAGAACAGATTGAAGCTATA
*
10797161 AATTATAGAT
128 AATTACAGAT
* * *
10797171 CTTATCTCTCTGAAATTGTAGTAGAGCAGATCATATCAAGTCTTATCTCCCTGAAGTTACAGTGG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* *
10797236 AGTAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTCGCAGCAGAACAGATTGAAGCTATAAAT
66 AGTAGACTGAAGATAACGAATCTTATTTCCCTAAAGTCGCAGCAGAACAGATTGAAGCTATAAAT
*
10797301 TACGGAT
131 TACAGAT
**
10797308 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAGTCTTATCTCCCTGAAGTTGCAGTGG
10797373 A
66 A
10797374 TCAGATTGAA
Statistics
Matches: 181, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
135 24 0.13
136 3 0.02
137 129 0.71
138 25 0.14
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (137 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAGTCTTATCTCCCTGAAGTTGCAGTGG
AGTAGACTGAAGATAACGAATCTTATTTCCCTAAAGTCGCAGCAGAACAGATTGAAGCTATAAAT
TACAGAT
Found at i:10797476 original size:93 final size:90
Alignment explanation
Indices: 10797310--10797477 Score: 219
Period size: 93 Copynumber: 1.8 Consensus size: 90
10797300 TTACGGATCT
* * * * * * *
10797310 TATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGGAT
1 TATCTCCCTGAAGTTACAGTAGAGCAGATCAAACCAAACCTTATCTCCCTGAAGTTGCAATAGAA
10797375 CAGATTGAAGACCGGCTACAAATCA
66 CAGATTGAAGACCGGCTACAAATCA
* *
10797400 TATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGCCACGAACCTTATCTCTCTGAAGTTGCAATA
1 TATCTCCCTGAAGTTACAGTAGAGCAGATCAAA-CCA--AACCTTATCTCCCTGAAGTTGCAATA
*
10797465 GAACAGGTTGAAG
63 GAACAGATTGAAG
10797478 TAACAAACCT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
90 29 0.45
91 2 0.03
93 34 0.52
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (90 bp):
TATCTCCCTGAAGTTACAGTAGAGCAGATCAAACCAAACCTTATCTCCCTGAAGTTGCAATAGAA
CAGATTGAAGACCGGCTACAAATCA
Found at i:10797485 original size:137 final size:129
Alignment explanation
Indices: 10797308--10797556 Score: 318
Period size: 137 Copynumber: 1.9 Consensus size: 129
10797298 AATTACGGAT
* * * * * *
10797308 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCTTATCTCCCTGAAGTTGCAGTGG
1 CTTATCTCTCTGAAGTTGCAATAGAACAGATAATAACAAACCTTATCTCCCTAAAGTTGCAGTAG
*
10797373 ATCAGATTGAAGACCGGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGCCAC
66 AGCAGATTG-A-A---GCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGCCAC
10797438 GAAC
126 GAAC
*
10797442 CTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAGTAACAAACCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAATAGAACA-GAT-AA-TAACAAACCTTATCTCCCTAAAGTTGCAG
* * * *
10797507 TAGAGCAGGTTGAAGCTACTAATCCTATCTTCCTGAAGTTACAGTGGAGC
63 TAGAGCAGATTGAAGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGC
10797557 GGATTAAAAC
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
132 33 0.33
134 26 0.26
135 3 0.03
136 2 0.02
137 36 0.36
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (129 bp):
CTTATCTCTCTGAAGTTGCAATAGAACAGATAATAACAAACCTTATCTCCCTAAAGTTGCAGTAG
AGCAGATTGAAGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGCCACGAAC
Found at i:10797593 original size:132 final size:135
Alignment explanation
Indices: 10797308--10797566 Score: 323
Period size: 132 Copynumber: 1.9 Consensus size: 135
10797298 AATTACGGAT
* * * * * *
10797308 CTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-CA-TATCAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAGTAACAAACCTTATCTCCCTAAAGTTGCAG
* * *
10797370 TGGATCAGATTGAAGACCGGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAGC
66 TAGAGCAGATTGAAGA-C-GCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAAC
10797435 CACGAAC
129 CACGAAC
10797442 CTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAGTAACAAACCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAGTAACAAACCTTATCTCCCTAAAGTTGCAG
* * * * * *
10797507 TAGAGCAGGTTG-A-A-GCTACTAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAAAC
66 TAGAGCAGATTGAAGACGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAAC
10797567 GATGAATCCT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
132 40 0.37
134 26 0.24
135 3 0.03
136 2 0.02
137 36 0.34
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (135 bp):
CTTATCTCTCTGAAGTTGCAATAGAACAGGTTGAAGTAACAAACCTTATCTCCCTAAAGTTGCAG
TAGAGCAGATTGAAGACGCTACAAATCATATCTCCCTGAAGTTACAGTGGAGCAGATCAAAACCA
CGAAC
Found at i:10798355 original size:5 final size:5
Alignment explanation
Indices: 10798345--10798374 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
10798335 TCTTTATTCT
10798345 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
10798375 AAGAATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10799844 original size:130 final size:131
Alignment explanation
Indices: 10799589--10799858 Score: 443
Period size: 130 Copynumber: 2.1 Consensus size: 131
10799579 AAAAATCTTG
** * *
10799589 AAAATAAAGGCAATATTCCGTATTTAGAAATTTGAGAAGTTGTGCCCTAACTTATTGGGTTTCGA
1 AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
* * *
10799654 TTTTTCTCGCGTTGAACGTAAATAATCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
10799719 A
131 A
* *
10799720 TAAATAAAGAAAATATTCTGT-TTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
1 AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
10799784 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
10799849 A
131 A
*
10799850 AAAACAAAG
1 AAAATAAAG
10799859 GTGAGCTTAT
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
130 111 0.87
131 17 0.13
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (131 bp):
AAAATAAAGAAAATATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
TTTTTCTCGCGTTAAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:10805427 original size:104 final size:103
Alignment explanation
Indices: 10805247--10805469 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
10805237 TGTATATAAA
** * *
10805247 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
10805312 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
10805351 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
10805415 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
10805454 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
10805470 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:10805521 original size:70 final size:72
Alignment explanation
Indices: 10805389--10805539 Score: 234
Period size: 71 Copynumber: 2.1 Consensus size: 72
10805379 TCATTGGTGG
* *
10805389 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
10805453 GAGGGGT
66 GAGGGAT
***
10805460 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
10805524 GAGGGAT
66 GAGGGAT
10805531 TGCTAAGTG
1 TGCTAAGTG
10805540 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
70 24 0.33
71 49 0.67
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGAT
Found at i:10814165 original size:14 final size:13
Alignment explanation
Indices: 10814129--10814181 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
10814119 ACTAAATTAA
10814129 ATTAAA-TTAAAT
1 ATTAAATTTAAAT
* *
10814141 -TAAAATATAAAT
1 ATTAAATTTAAAT
10814153 ATTAAATCTTAAAT
1 ATTAAAT-TTAAAT
*
10814167 CTTAAATTTAAAT
1 ATTAAATTTAAAT
10814180 AT
1 AT
10814182 AGTAAAGAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
11 4 0.12
12 5 0.16
13 12 0.38
14 11 0.34
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTAAATTTAAAT
Found at i:10814179 original size:6 final size:6
Alignment explanation
Indices: 10814121--10814179 Score: 52
Period size: 7 Copynumber: 9.8 Consensus size: 6
10814111 AAAATAGAAC
* *
10814121 TAAA-T TAAA-T TAAA-T TAAATT AAAATA TAAATAT TAAATCT TAAATCT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAAT-T TAAAT-T TAAAT-T
10814169 TAAATT TAAAT
1 TAAATT TAAAT
10814180 ATAGTAAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
5 14 0.30
6 15 0.32
7 18 0.38
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:10815272 original size:19 final size:19
Alignment explanation
Indices: 10815226--10815279 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
10815216 GAACTTGTCC
*
10815226 AAAAAAA-TTATACTTTTT
1 AAAAAAATTTATATTTTTT
*
10815244 AAAATTAATTTATATTTTTT
1 AAAA-AAATTTATATTTTTT
*
10815264 AAAAAAATTTAAATTT
1 AAAAAAATTTATATTT
10815280 ATGTTTACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
20 14 0.47
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAAAAATTTATATTTTTT
Found at i:10822232 original size:49 final size:49
Alignment explanation
Indices: 10822160--10822262 Score: 206
Period size: 49 Copynumber: 2.1 Consensus size: 49
10822150 ATATATATAT
10822160 ATATTATATGCTTATATATTGTTTTGGTTTGATCTTGTGATTTAAATAA
1 ATATTATATGCTTATATATTGTTTTGGTTTGATCTTGTGATTTAAATAA
10822209 ATATTATATGCTTATATATTGTTTTGGTTTGATCTTGTGATTTAAATAA
1 ATATTATATGCTTATATATTGTTTTGGTTTGATCTTGTGATTTAAATAA
10822258 ATATT
1 ATATT
10822263 TTATATTACT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (49 bp):
ATATTATATGCTTATATATTGTTTTGGTTTGATCTTGTGATTTAAATAA
Found at i:10824479 original size:47 final size:47
Alignment explanation
Indices: 10824410--10824505 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
10824400 CTAAACAGAA
*
10824410 ACTCGTAAGAGCTGATCTAGCCAATCATGCCAAACAGAAAGTAAAAG
1 ACTCGTAAGAGCTGATCAAGCCAATCATGCCAAACAGAAAGTAAAAG
10824457 ACTCGTAAGAGCTGATCAAGCCAATCATGCCAAACAGAAAGTAAAAG
1 ACTCGTAAGAGCTGATCAAGCCAATCATGCCAAACAGAAAGTAAAAG
10824504 AC
1 AC
10824506 GAGATTTTGC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.16
Consensus pattern (47 bp):
ACTCGTAAGAGCTGATCAAGCCAATCATGCCAAACAGAAAGTAAAAG
Found at i:10826226 original size:16 final size:17
Alignment explanation
Indices: 10826195--10826226 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10826185 CTAAAATATT
10826195 AATTAAATTAATTTTCC
1 AATTAAATTAATTTTCC
10826212 AATTAAATT-ATTTTC
1 AATTAAATTAATTTTC
10826227 TAACTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATTAATTTTCC
Found at i:10829491 original size:23 final size:21
Alignment explanation
Indices: 10829465--10829512 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
10829455 TGCCCGGCCC
10829465 AAATCAAAAATAAATAAACAA-AA
1 AAAT-AAAAA-AAATAAA-AACAA
*
10829488 AAATATAAAAAATAAAAACAA
1 AAATAAAAAAAATAAAAACAA
10829509 AAAT
1 AAAT
10829513 TATTAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 2 0.09
21 13 0.57
22 4 0.17
23 4 0.17
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (21 bp):
AAATAAAAAAAATAAAAACAA
Found at i:10829933 original size:13 final size:13
Alignment explanation
Indices: 10829915--10829939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10829905 GATTGTATTT
10829915 TTATTTTATTTTA
1 TTATTTTATTTTA
10829928 TTATTTTATTTT
1 TTATTTTATTTT
10829940 CGTTTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:10832076 original size:23 final size:24
Alignment explanation
Indices: 10832029--10832074 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10832019 AAAAAATATT
10832029 AAATATATATATATTTTATTTTTA
1 AAATATATATATATTTTATTTTTA
*
10832053 AAATATA-ATAGTTTTTTATTTT
1 AAATATATATA-TATTTTATTTT
10832075 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
AAATATATATATATTTTATTTTTA
Found at i:10832219 original size:68 final size:68
Alignment explanation
Indices: 10832140--10832340 Score: 298
Period size: 59 Copynumber: 3.1 Consensus size: 68
10832130 TCAAGTTTGT
*
10832140 TTTACTAATCAAATGTTAGATTTTGTTACAACAATCAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATCAATACAATTAATACAATTAATAATTTGAT
10832205 AAA
66 AAA
10832208 TTTACTAATCAAATGTTAGATTTTATT------A-C-A-ACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATCAATACAATTAATACAATTAATAATTTGAT
10832264 AAA
66 AAA
*
10832267 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATCAATACAATTAATACAATTAATAATTTGAT
*
10832330 AAT
66 AAA
10832333 TTTACTAA
1 TTTACTAA
10832341 CAATTAATTT
Statistics
Matches: 121, Mismatches: 3, Indels: 20
0.84 0.02 0.14
Matches are distributed among these distances:
59 56 0.46
60 1 0.01
61 1 0.01
62 1 0.01
65 1 0.01
66 27 0.22
67 2 0.02
68 32 0.26
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.40
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATCAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:10832350 original size:16 final size:16
Alignment explanation
Indices: 10832329--10832370 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10832319 AATAATTTGA
*
10832329 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
10832345 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
10832361 TAGTTTTAAT
1 TAATTTTAAT
10832371 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Done.