Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_D12 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 58873029 ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33 Warning! 639818 characters in sequence are not A, C, G, or T File 42 of 196 Found at i:11605830 original size:18 final size:18 Alignment explanation
Indices: 11605803--11605838 Score: 54 Period size: 18 Copynumber: 2.0 Consensus size: 18 11605793 TATTATTAAG * * 11605803 AATTTTATTAAATTATAT 1 AATTTAATTAAAATATAT 11605821 AATTTAATTAAAATATAT 1 AATTTAATTAAAATATAT 11605839 TTAATAATAA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (18 bp): AATTTAATTAAAATATAT Found at i:11605931 original size:15 final size:16 Alignment explanation
Indices: 11605903--11605932 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 11605893 TAAATTCATA 11605903 TAAGAATATTTATTAT 1 TAAGAATATTTATTAT 11605919 TAAGAAT-TTTATTA 1 TAAGAATATTTATTA 11605933 AATTATATAT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 7 0.50 16 7 0.50 ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50 Consensus pattern (16 bp): TAAGAATATTTATTAT Found at i:11605954 original size:14 final size:15 Alignment explanation
Indices: 11605928--11605967 Score: 50 Period size: 14 Copynumber: 2.9 Consensus size: 15 11605918 TTAAGAATTT * 11605928 TATTAAATT-ATATA 1 TATTTAATTAATATA 11605942 T-TTTAATTAATATA 1 TATTTAATTAATATA 11605956 TATTTAA-TAATA 1 TATTTAATTAATA 11605968 ATTATGTTAA Statistics Matches: 23, Mismatches: 1, Indels: 4 0.82 0.04 0.14 Matches are distributed among these distances: 13 6 0.26 14 12 0.52 15 5 0.22 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (15 bp): TATTTAATTAATATA Found at i:11605957 original size:18 final size:17 Alignment explanation
Indices: 11605924--11605960 Score: 51 Period size: 16 Copynumber: 2.2 Consensus size: 17 11605914 ATTATTAAGA 11605924 ATTTTATTAAATTATAT 1 ATTTTATTAAATTATAT 11605941 ATTTTAATT-AA-TATAT 1 ATTTT-ATTAAATTATAT 11605957 ATTT 1 ATTT 11605961 AATAATAATT Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 16 9 0.47 17 7 0.37 18 3 0.16 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (17 bp): ATTTTATTAAATTATAT Found at i:11606147 original size:39 final size:41 Alignment explanation
Indices: 11606102--11606207 Score: 135 Period size: 44 Copynumber: 2.5 Consensus size: 41 11606092 TTTCCTTATG * 11606102 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC 1 CTATTACGCCTCTATTCCATTCAACCAAACACAAGAATTAC * 11606142 C-ATTACGCCTCTATTCCATTCCATTCAACCAAACAGAAGAATTAC 1 CTATTACGCCTC---T--ATTCCATTCAACCAAACACAAGAATTAC 11606187 CTATTACGCCTCTATTCCATT 1 CTATTACGCCTCTATTCCATT 11606208 ACACCTCTAT Statistics Matches: 57, Mismatches: 2, Indels: 13 0.79 0.03 0.18 Matches are distributed among these distances: 39 9 0.16 40 1 0.02 41 8 0.14 42 1 0.02 43 1 0.02 44 23 0.40 45 4 0.07 46 10 0.18 ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29 Consensus pattern (41 bp): CTATTACGCCTCTATTCCATTCAACCAAACACAAGAATTAC Found at i:11606182 original size:44 final size:46 Alignment explanation
Indices: 11606115--11606207 Score: 163 Period size: 44 Copynumber: 2.1 Consensus size: 46 11606105 TTACACCTCT 11606115 ATTCCATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCC 1 ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC * 11606159 ATTCCATTCAACCAAACAGAAGAATTACCTATTACGCCTCTATTCC 1 ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC 11606205 ATT 1 ATT 11606208 ACACCTCTAT Statistics Matches: 46, Mismatches: 1, Indels: 2 0.94 0.02 0.04 Matches are distributed among these distances: 44 23 0.50 45 4 0.09 46 19 0.41 ACGTcount: A:0.35, C:0.31, G:0.05, T:0.28 Consensus pattern (46 bp): ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC Found at i:11606214 original size:16 final size:16 Alignment explanation
Indices: 11606189--11606242 Score: 99 Period size: 16 Copynumber: 3.4 Consensus size: 16 11606179 AGAATTACCT * 11606189 ATTACGCCTCTATTCC 1 ATTACACCTCTATTCC 11606205 ATTACACCTCTATTCC 1 ATTACACCTCTATTCC 11606221 ATTACACCTCTATTCC 1 ATTACACCTCTATTCC 11606237 ATTACA 1 ATTACA 11606243 GCGAACCAAA Statistics Matches: 37, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 16 37 1.00 ACGTcount: A:0.26, C:0.35, G:0.02, T:0.37 Consensus pattern (16 bp): ATTACACCTCTATTCC Found at i:11609537 original size:27 final size:27 Alignment explanation
Indices: 11609479--11609540 Score: 72 Period size: 27 Copynumber: 2.3 Consensus size: 27 11609469 AAGTGTTTGC * * * 11609479 AATATAGTCTACCTATAGTAGTCTTAG 1 AATATACTATACCTATAGCAGTCTTAG * 11609506 TATATACTATACCTATAGCAGT-TTCAG 1 AATATACTATACCTATAGCAGTCTT-AG 11609533 AATATACT 1 AATATACT 11609541 TGGTGTACTA Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 26 2 0.07 27 27 0.93 ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37 Consensus pattern (27 bp): AATATACTATACCTATAGCAGTCTTAG Found at i:11637500 original size:27 final size:26 Alignment explanation
Indices: 11637470--11637632 Score: 105 Period size: 27 Copynumber: 6.1 Consensus size: 26 11637460 TCGATATCTA * 11637470 GACCGAAATACCCTCGAAGGATAAAAT 1 GACCGAAATACCCT-GAAGGGTAAAAT * * 11637497 GACCAAAATACCCTTAATGGGTAAAAT 1 GACCGAAATACCCTGAA-GGGTAAAAT * * 11637524 GATCGAAATACTCCTGTA-GGTAAGAAT 1 GACCGAAATAC-CCTGAAGGGTAA-AAT * * * * 11637551 -ACTGAAATACCCTCATAAGTTAAAAT 1 GACCGAAATACCCTGA-AGGGTAAAAT * * 11637577 GACCGTAATACTCCTGTAGGGTAAAAT 1 GACCGAAATAC-CCTGAAGGGTAAAAT ** * * * 11637604 GAATGTAATGCCCCTGTAGGGTAAAAT 1 GACCGAAAT-ACCCTGAAGGGTAAAAT 11637631 GA 1 GA 11637633 TCGTAATGGC Statistics Matches: 107, Mismatches: 21, Indels: 16 0.74 0.15 0.11 Matches are distributed among these distances: 25 3 0.03 26 19 0.18 27 77 0.72 28 8 0.07 ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23 Consensus pattern (26 bp): GACCGAAATACCCTGAAGGGTAAAAT Found at i:11637638 original size:27 final size:27 Alignment explanation
Indices: 11637571--11637668 Score: 124 Period size: 27 Copynumber: 3.6 Consensus size: 27 11637561 CCTCATAAGT * * 11637571 TAAAATGACCGTAATACTCCTGTAGGG 1 TAAAATGACCGTAATGCCCCTGTAGGG ** 11637598 TAAAATGAATGTAATGCCCCTGTAGGG 1 TAAAATGACCGTAATGCCCCTGTAGGG * * * * 11637625 TAAAATGATCGTAATGGCCCTATAGGT 1 TAAAATGACCGTAATGCCCCTGTAGGG 11637652 TAAAATGACCGTAATGC 1 TAAAATGACCGTAATGC 11637669 TCTGGTGGGT Statistics Matches: 60, Mismatches: 11, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 27 60 1.00 ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27 Consensus pattern (27 bp): TAAAATGACCGTAATGCCCCTGTAGGG Found at i:11637638 original size:54 final size:53 Alignment explanation
Indices: 11637502--11637639 Score: 138 Period size: 53 Copynumber: 2.6 Consensus size: 53 11637492 AAAATGACCA * * * 11637502 AAATACCCTTA-ATGGGTAAAATGATCGAAATACTCCTGTAGGTAAGAATACTG 1 AAATACCCTCATA-GGGTAAAATGATCGTAATACTCCTGTAGGTAAGAATAATG * * * 11637555 AAATACCCTCATAAGTTAAAATGACCGTAATACTCCTGTAGGGTAA-AATGAATG 1 AAATACCCTCATAGGGTAAAATGATCGTAATACTCCTGTA-GGTAAGAAT-AATG * * * 11637609 TAATGCCC-CTGTAGGGTAAAATGATCGTAAT 1 AAATACCCTC-ATAGGGTAAAATGATCGTAAT 11637640 GGCCCTATAG Statistics Matches: 69, Mismatches: 12, Indels: 7 0.78 0.14 0.08 Matches are distributed among these distances: 53 37 0.54 54 32 0.46 ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27 Consensus pattern (53 bp): AAATACCCTCATAGGGTAAAATGATCGTAATACTCCTGTAGGTAAGAATAATG Found at i:11637959 original size:32 final size:33 Alignment explanation
Indices: 11637906--11638082 Score: 152 Period size: 32 Copynumber: 5.5 Consensus size: 33 11637896 GCTGCGATGC * * 11637906 TACTGATGGCTTTGTGTCGATCATAGT-ACCGT 1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT * * 11637938 TACT-AGTGGCTGTGTGCCGATCAT-TTCACTGT 1 TACTGA-TGGCTGTGTGCCGATCATAGTCACCGT * ** * * 11637970 TACTGATGGTTGTGTGATGATCATA-TCACTGC 1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT * * 11638002 TACTGATGGCTTTGTG-CGAATCAT-GTTACCGT 1 TACTGATGGCTGTGTGCCG-ATCATAGTCACCGT * * * 11638034 TACTGATGGTTGTGTGCCGATCATA-TCACTGC 1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT * 11638066 TACTGATGGCTTTGTGC 1 TACTGATGGCTGTGTGC 11638083 TAATCACATT Statistics Matches: 116, Mismatches: 21, Indels: 16 0.76 0.14 0.10 Matches are distributed among these distances: 31 3 0.03 32 110 0.95 33 3 0.03 ACGTcount: A:0.18, C:0.19, G:0.25, T:0.37 Consensus pattern (33 bp): TACTGATGGCTGTGTGCCGATCATAGTCACCGT Found at i:11637994 original size:64 final size:63 Alignment explanation
Indices: 11637906--11638088 Score: 187 Period size: 64 Copynumber: 2.9 Consensus size: 63 11637896 GCTGCGATGC * 11637906 TACTGATGGCTT-TGTGTCGATCATAGT-ACCGTTACT-AGTGGCTGTGTGCCG-ATCAT-TTCA 1 TACTGATGG-TTGTGTGT-GATCATA-TCACCGCTACTGA-TGGCTGTGTG-CGAATCATGTT-A * 11637966 CTGT 60 CCGT * * 11637970 TACTGATGGTTGTGTGATGATCATATCACTGCTACTGATGGCTTTGTGCGAATCATGTTACCGT 1 TACTGATGGTTGTGTG-TGATCATATCACCGCTACTGATGGCTGTGTGCGAATCATGTTACCGT * * * * 11638034 TACTGATGGTTGTGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCTAATCA 1 TACTGATGGTTGTGTG-TGATCATATCACCGCTACTGATGGCTGTGTGCGAATCA 11638089 CATTACTGTA Statistics Matches: 106, Mismatches: 7, Indels: 12 0.85 0.06 0.10 Matches are distributed among these distances: 63 5 0.05 64 97 0.92 65 4 0.04 ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37 Consensus pattern (63 bp): TACTGATGGTTGTGTGTGATCATATCACCGCTACTGATGGCTGTGTGCGAATCATGTTACCGT Found at i:11638070 original size:96 final size:96 Alignment explanation
Indices: 11637903--11638108 Score: 269 Period size: 96 Copynumber: 2.2 Consensus size: 96 11637893 CTTGCTGCGA * 11637903 TGCTACTGATGGCTTTGTGTCGATCATAGTACCGTTACTAGTGGCTGTGTGCCGATCATTTCACT 1 TGCTACTGATGGCTTTGTGTCGATCATAGTACCGTTACTAGTGGCTGTGTGCCGATCATATCACT * * * 11637968 GTTACTGATGG-TTGTGTGATGATCATATCAC 66 GCTACTGATGGCTT-TGTGATAATCACATCAC * 11637999 TGCTACTGATGGCTTTGTG-CGAATCAT-GTTACCGTTACT-GATGGTTGTGTGCCGATCATATC 1 TGCTACTGATGGCTTTGTGTCG-ATCATAG-TACCGTTACTAG-TGGCTGTGTGCCGATCATATC * * 11638061 ACTGCTACTGATGGCTTTGTGCTAATCACATTAC 63 ACTGCTACTGATGGCTTTGTGATAATCACATCAC * 11638095 TG-TACTTATGGCTT 1 TGCTACTGATGGCTT 11638109 GTAGTCATTC Statistics Matches: 98, Mismatches: 8, Indels: 9 0.85 0.07 0.08 Matches are distributed among these distances: 95 15 0.15 96 81 0.83 97 2 0.02 ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38 Consensus pattern (96 bp): TGCTACTGATGGCTTTGTGTCGATCATAGTACCGTTACTAGTGGCTGTGTGCCGATCATATCACT GCTACTGATGGCTTTGTGATAATCACATCAC Found at i:11638373 original size:28 final size:28 Alignment explanation
Indices: 11638339--11638405 Score: 125 Period size: 28 Copynumber: 2.4 Consensus size: 28 11638329 TAACGGGCAG 11638339 AGGCCCACACTATTTCTATATTGGGCTA 1 AGGCCCACACTATTTCTATATTGGGCTA * 11638367 AGGCCCACACTATTTCTGTATTGGGCTA 1 AGGCCCACACTATTTCTATATTGGGCTA 11638395 AGGCCCACACT 1 AGGCCCACACT 11638406 GTACTATTAC Statistics Matches: 38, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 28 38 1.00 ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28 Consensus pattern (28 bp): AGGCCCACACTATTTCTATATTGGGCTA Found at i:11641292 original size:17 final size:17 Alignment explanation
Indices: 11641251--11641299 Score: 55 Period size: 17 Copynumber: 2.8 Consensus size: 17 11641241 TCATTTATAT * 11641251 ACATATAATATATATAC 1 ACATATAATATATACAC * 11641268 ACACATAATATATACAC 1 ACATATAATATATACAC 11641285 A-ATTATAATAATATA 1 ACA-TATAAT-ATATA 11641300 AAAAATATTG Statistics Matches: 27, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 16 1 0.04 17 21 0.78 18 5 0.19 ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33 Consensus pattern (17 bp): ACATATAATATATACAC Found at i:11644753 original size:21 final size:21 Alignment explanation
Indices: 11644720--11644768 Score: 57 Period size: 21 Copynumber: 2.3 Consensus size: 21 11644710 ATCATGTTAT * 11644720 TTAT-TTTTATTTGATTTTG- 1 TTATGTTTTATTTGAATTTGA 11644739 TTATGTTTATATTTGAATTTGAA 1 TTATGTTT-TATTTGAATTTG-A 11644762 TTATGTT 1 TTATGTT 11644769 AGCACCACTG Statistics Matches: 25, Mismatches: 1, Indels: 4 0.83 0.03 0.13 Matches are distributed among these distances: 19 4 0.16 20 3 0.12 21 11 0.44 23 7 0.28 ACGTcount: A:0.22, C:0.00, G:0.12, T:0.65 Consensus pattern (21 bp): TTATGTTTTATTTGAATTTGA Found at i:11645746 original size:23 final size:23 Alignment explanation
Indices: 11645720--11645765 Score: 58 Period size: 23 Copynumber: 2.0 Consensus size: 23 11645710 GAGTGTATAA * 11645720 ATGTATGCATATGAAT-TATTTTG 1 ATGTATGAAT-TGAATGTATTTTG * 11645743 ATGTTTGAATTGAATGTATTTTG 1 ATGTATGAATTGAATGTATTTTG 11645766 TTATAATAAC Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 22 5 0.25 23 15 0.75 ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50 Consensus pattern (23 bp): ATGTATGAATTGAATGTATTTTG Found at i:11646887 original size:14 final size:14 Alignment explanation
Indices: 11646868--11646901 Score: 59 Period size: 14 Copynumber: 2.4 Consensus size: 14 11646858 ATTTTCTTCA 11646868 CTTGAACCCTGCAC 1 CTTGAACCCTGCAC * 11646882 CTTGAATCCTGCAC 1 CTTGAACCCTGCAC 11646896 CTTGAA 1 CTTGAA 11646902 ACTTAAATCT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 14 19 1.00 ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26 Consensus pattern (14 bp): CTTGAACCCTGCAC Found at i:11650601 original size:3 final size:3 Alignment explanation
Indices: 11650593--11650630 Score: 76 Period size: 3 Copynumber: 12.7 Consensus size: 3 11650583 ACAACCTTGA 11650593 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA 11650631 AACAAAGCAA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 35 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (3 bp): AAT Found at i:11654531 original size:43 final size:43 Alignment explanation
Indices: 11654486--11654746 Score: 195 Period size: 43 Copynumber: 6.1 Consensus size: 43 11654476 GGACAGGACG * * * 11654486 AAGTAATTATACTGGTACACATAGTACATCATTGGATAAACCG 1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA * ** ** ** * 11654529 AAGCAATTATGTTGGCACGTA-AGTGCATCATTGGATGTACCG 1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA * * * * * * 11654571 AAGAAAATATA-TCG-ACATATAAGTGCATCATAGGATATACCA 1 AAGTAATTATACTGGCACACAT-AGTGCATCATTGGATAAACCA * ** * * * ** 11654613 AAGCAATTATACTAACACACATAGTGCATTATCGGACAAGTCA 1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA * * * * *** 11654656 AATTAATTATACTAGCACACACAGTGCATCATTGGACAAGGTA 1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA * 11654699 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAATCA 1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA 11654742 AAGTA 1 AAGTA 11654747 TAAATTGTAC Statistics Matches: 171, Mismatches: 43, Indels: 8 0.77 0.19 0.04 Matches are distributed among these distances: 40 4 0.02 41 2 0.01 42 53 0.31 43 107 0.63 44 5 0.03 ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26 Consensus pattern (43 bp): AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA Found at i:11654564 original size:42 final size:42 Alignment explanation
Indices: 11654484--11654623 Score: 129 Period size: 42 Copynumber: 3.3 Consensus size: 42 11654474 TCGGACAGGA * * * * 11654484 CGAAGTAATTATACTGGTACACAT-AGTACATCATTGGATAAAC 1 CGAAGCAATTATA-TCG-ACACATAAGTGCATCATTGGATATAC * * * * * 11654527 CGAAGCAATTATGTTGGCACGTAAGTGCATCATTGGATGTAC 1 CGAAGCAATTATATCGACACATAAGTGCATCATTGGATATAC * * * * 11654569 CGAAGAAAATATATCGACATATAAGTGCATCATAGGATATAC 1 CGAAGCAATTATATCGACACATAAGTGCATCATTGGATATAC * 11654611 CAAAGCAATTATA 1 CGAAGCAATTATA 11654624 CTAACACACA Statistics Matches: 76, Mismatches: 20, Indels: 3 0.77 0.20 0.03 Matches are distributed among these distances: 41 4 0.05 42 61 0.80 43 11 0.14 ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26 Consensus pattern (42 bp): CGAAGCAATTATATCGACACATAAGTGCATCATTGGATATAC Found at i:11659402 original size:46 final size:47 Alignment explanation
Indices: 11659338--11659428 Score: 114 Period size: 46 Copynumber: 2.0 Consensus size: 47 11659328 CTTTGAATTG * * 11659338 CGAACTCAAATCTCAAACCATAAATTTCAAATCTCAAAC-TCGAACT 1 CGAACTCAAATCTCAAACCATAAATCTCAAACCTCAAACTTCGAACT * * * 11659384 CGAACTCGAA-CTCTAAACCTTAAATCTCAAACCTTAAACTTCGAA 1 CGAACTCAAATCTC-AAACCATAAATCTCAAACCTCAAACTTCGAA 11659429 ACTTAAACAT Statistics Matches: 38, Mismatches: 5, Indels: 3 0.83 0.11 0.07 Matches are distributed among these distances: 45 3 0.08 46 30 0.79 47 5 0.13 ACGTcount: A:0.42, C:0.29, G:0.05, T:0.24 Consensus pattern (47 bp): CGAACTCAAATCTCAAACCATAAATCTCAAACCTCAAACTTCGAACT Found at i:11661324 original size:14 final size:14 Alignment explanation
Indices: 11661305--11661331 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 11661295 AAAATAAAAA 11661305 AAAATATTAGAATT 1 AAAATATTAGAATT 11661319 AAAATATTAGAAT 1 AAAATATTAGAAT 11661332 CACAATAAAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33 Consensus pattern (14 bp): AAAATATTAGAATT Found at i:11661338 original size:14 final size:14 Alignment explanation
Indices: 11661305--11661338 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 11661295 AAAATAAAAA * 11661305 AAAATATTAGAATT 1 AAAATATTAGAATC 11661319 AAAATATTAGAATC 1 AAAATATTAGAATC * 11661333 ACAATA 1 AAAATA 11661339 AAACAAAAAG Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 14 18 1.00 ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29 Consensus pattern (14 bp): AAAATATTAGAATC Found at i:11662297 original size:7 final size:7 Alignment explanation
Indices: 11662285--11662315 Score: 62 Period size: 7 Copynumber: 4.4 Consensus size: 7 11662275 TAGTTGAACA 11662285 AATTGCT 1 AATTGCT 11662292 AATTGCT 1 AATTGCT 11662299 AATTGCT 1 AATTGCT 11662306 AATTGCT 1 AATTGCT 11662313 AAT 1 AAT 11662316 CGCTTAGCTT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 24 1.00 ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42 Consensus pattern (7 bp): AATTGCT Found at i:11663551 original size:24 final size:23 Alignment explanation
Indices: 11663514--11663569 Score: 58 Period size: 24 Copynumber: 2.3 Consensus size: 23 11663504 GAGAAGAAAA ** 11663514 AAAATAAAAGAAAAAGGAAAGACGG 1 AAAA-AAAAGAAAAAAAAAAGA-GG * * 11663539 TAAAAAAATAAAAAAAAAAGAGG 1 AAAAAAAAGAAAAAAAAAAGAGG 11663562 AAAAAAAA 1 AAAAAAAA 11663570 AGGATTTTAT Statistics Matches: 26, Mismatches: 5, Indels: 2 0.79 0.15 0.06 Matches are distributed among these distances: 23 9 0.35 24 14 0.54 25 3 0.12 ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05 Consensus pattern (23 bp): AAAAAAAAGAAAAAAAAAAGAGG Found at i:11663675 original size:31 final size:30 Alignment explanation
Indices: 11663618--11663680 Score: 74 Period size: 31 Copynumber: 2.1 Consensus size: 30 11663608 AAATTCTATT * 11663618 TTTTCGAAAAATTTAAAATTTTAAAAAATA 1 TTTTCGAAAAATTTAAAATTTAAAAAAATA * * 11663648 TTTTCTAAAAATTTTAATAA-TTAAAAAATTA 1 TTTTCGAAAAA-TTTAA-AATTTAAAAAAATA 11663679 TT 1 TT 11663681 AAATTTTGCC Statistics Matches: 28, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 30 10 0.36 31 16 0.57 32 2 0.07 ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44 Consensus pattern (30 bp): TTTTCGAAAAATTTAAAATTTAAAAAAATA Found at i:11665802 original size:14 final size:14 Alignment explanation
Indices: 11665791--11665820 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 11665781 TTAAAATGTT 11665791 TTTC-GGAAAATGA 1 TTTCTGGAAAATGA 11665804 TTTCTGGAAAATGA 1 TTTCTGGAAAATGA 11665818 TTT 1 TTT 11665821 ACTTTTTTAG Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 13 4 0.25 14 12 0.75 ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40 Consensus pattern (14 bp): TTTCTGGAAAATGA Found at i:11665964 original size:20 final size:20 Alignment explanation
Indices: 11665941--11665979 Score: 69 Period size: 20 Copynumber: 1.9 Consensus size: 20 11665931 ATTTTTACAT 11665941 ATATTAATAAATTTATATAC 1 ATATTAATAAATTTATATAC * 11665961 ATATTAATAAATTTTTATA 1 ATATTAATAAATTTATATA 11665980 TTTTAAATTA Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49 Consensus pattern (20 bp): ATATTAATAAATTTATATAC Found at i:11667284 original size:32 final size:32 Alignment explanation
Indices: 11667238--11667302 Score: 121 Period size: 32 Copynumber: 2.0 Consensus size: 32 11667228 TGTCAATCAT 11667238 TTCAATATCCAACAAGCTTAAAACATAATAAA 1 TTCAATATCCAACAAGCTTAAAACATAATAAA * 11667270 TTCAATATCTAACAAGCTTAAAACATAATAAA 1 TTCAATATCCAACAAGCTTAAAACATAATAAA 11667302 T 1 T 11667303 ATCTAACATT Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 32 1.00 ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28 Consensus pattern (32 bp): TTCAATATCCAACAAGCTTAAAACATAATAAA Found at i:11667305 original size:27 final size:29 Alignment explanation
Indices: 11667241--11667310 Score: 90 Period size: 32 Copynumber: 2.4 Consensus size: 29 11667231 CAATCATTTC * 11667241 AATATCCAACAAGCTTAAAACATAATAAATT 1 AATATCTAACAAGCTTAAAACATAAT-AA-T 11667272 CAATATCTAACAAGCTTAAAACATAAT-A- 1 -AATATCTAACAAGCTTAAAACATAATAAT 11667300 AATATCTAACA 1 AATATCTAACA 11667311 TTCAAGACAT Statistics Matches: 37, Mismatches: 1, Indels: 5 0.86 0.02 0.12 Matches are distributed among these distances: 27 11 0.30 30 1 0.03 32 25 0.68 ACGTcount: A:0.54, C:0.17, G:0.03, T:0.26 Consensus pattern (29 bp): AATATCTAACAAGCTTAAAACATAATAAT Found at i:11668923 original size:23 final size:21 Alignment explanation
Indices: 11668878--11668924 Score: 58 Period size: 21 Copynumber: 2.1 Consensus size: 21 11668868 AGATGCAAGC * * 11668878 TATTAAAAGCAAAAGATATAA 1 TATTAAAAGCAAAAAAAATAA 11668899 TATTAAAAGCTAAAAAAAATGAA 1 TATTAAAAGC-AAAAAAAAT-AA 11668922 TAT 1 TAT 11668925 AGCTCATGGC Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 21 10 0.45 22 7 0.32 23 5 0.23 ACGTcount: A:0.62, C:0.04, G:0.09, T:0.26 Consensus pattern (21 bp): TATTAAAAGCAAAAAAAATAA Found at i:11673149 original size:24 final size:24 Alignment explanation
Indices: 11673122--11673173 Score: 68 Period size: 24 Copynumber: 2.2 Consensus size: 24 11673112 TTTCTAGAAG * ** 11673122 ATTTAGTATTTATGAGTATAATAT 1 ATTTAGCATTTATGAACATAATAT * 11673146 ATTTAGCATTTATTAACATAATAT 1 ATTTAGCATTTATGAACATAATAT 11673170 ATTT 1 ATTT 11673174 GACTTTGATT Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50 Consensus pattern (24 bp): ATTTAGCATTTATGAACATAATAT Found at i:11676740 original size:19 final size:18 Alignment explanation
Indices: 11676716--11676751 Score: 63 Period size: 19 Copynumber: 1.9 Consensus size: 18 11676706 CATGCTTTCT 11676716 ATTCACATTTTCATATTCA 1 ATTCACATTTT-ATATTCA 11676735 ATTCACATTTTATATTC 1 ATTCACATTTTATATTC 11676752 CACAATCACG Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 18 6 0.35 19 11 0.65 ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50 Consensus pattern (18 bp): ATTCACATTTTATATTCA Found at i:11677978 original size:22 final size:21 Alignment explanation
Indices: 11677953--11677993 Score: 73 Period size: 22 Copynumber: 1.9 Consensus size: 21 11677943 TCTTTTTCTA 11677953 TTTGTTTTATCTATTTATTTGT 1 TTTGTTTTATCT-TTTATTTGT 11677975 TTTGTTTTATCTTTTATTT 1 TTTGTTTTATCTTTTATTT 11677994 TACTTTACTT Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 21 7 0.37 22 12 0.63 ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76 Consensus pattern (21 bp): TTTGTTTTATCTTTTATTTGT Found at i:11678299 original size:29 final size:29 Alignment explanation
Indices: 11678257--11678313 Score: 89 Period size: 29 Copynumber: 2.0 Consensus size: 29 11678247 ATCTTTTCTT * 11678257 AATTTATTTCATAATATAATAATATAATC 1 AATTTATTTCATAATATAATAAAATAATC 11678286 AATTTAATTT-ATAATATAATAAAATAAT 1 AATTT-ATTTCATAATATAATAAAATAAT 11678314 AACAATAATA Statistics Matches: 26, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 29 22 0.85 30 4 0.15 ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44 Consensus pattern (29 bp): AATTTATTTCATAATATAATAAAATAATC Found at i:11678334 original size:37 final size:37 Alignment explanation
Indices: 11678267--11678337 Score: 90 Period size: 37 Copynumber: 1.9 Consensus size: 37 11678257 AATTTATTTC * * * 11678267 ATAATATAATAATATAATCAATTTAATTTATAATATA 1 ATAAAATAATAAAATAATCAATATAATTTATAATATA * 11678304 ATAAAATAATAACAATAAT-AATATATTTTATAAT 1 ATAAAATAATAA-AATAATCAATATAATTTATAAT 11678338 TAAACAGTCA Statistics Matches: 29, Mismatches: 4, Indels: 2 0.83 0.11 0.06 Matches are distributed among these distances: 37 24 0.83 38 5 0.17 ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41 Consensus pattern (37 bp): ATAAAATAATAAAATAATCAATATAATTTATAATATA Found at i:11681736 original size:38 final size:38 Alignment explanation
Indices: 11681694--11681768 Score: 150 Period size: 38 Copynumber: 2.0 Consensus size: 38 11681684 TCTTTTCACA 11681694 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG 1 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG 11681732 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCC 1 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCC 11681769 ATCCCTAGTA Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 38 37 1.00 ACGTcount: A:0.37, C:0.32, G:0.09, T:0.21 Consensus pattern (38 bp): GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG Found at i:11684270 original size:18 final size:18 Alignment explanation
Indices: 11684247--11684281 Score: 61 Period size: 18 Copynumber: 1.9 Consensus size: 18 11684237 CATGCTTTCT 11684247 ATTCACATTTCATATTCA 1 ATTCACATTTCATATTCA * 11684265 ATTCACATTTTATATTC 1 ATTCACATTTCATATTC 11684282 CACAATCACG Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49 Consensus pattern (18 bp): ATTCACATTTCATATTCA Found at i:11685255 original size:29 final size:29 Alignment explanation
Indices: 11685207--11685264 Score: 66 Period size: 29 Copynumber: 2.0 Consensus size: 29 11685197 TTAAGCAATT 11685207 CTAATCAATAATTCTATCAA-ATAAACCC 1 CTAATCAATAATTCTATCAACATAAACCC * * 11685235 CTAATTCAATCATT-TATTCAACATGAACCC 1 CTAA-TCAATAATTCTA-TCAACATAAACCC 11685265 TACTAAAAAA Statistics Matches: 25, Mismatches: 2, Indels: 4 0.81 0.06 0.13 Matches are distributed among these distances: 28 6 0.24 29 12 0.48 30 7 0.28 ACGTcount: A:0.41, C:0.26, G:0.02, T:0.31 Consensus pattern (29 bp): CTAATCAATAATTCTATCAACATAAACCC Found at i:11685522 original size:22 final size:22 Alignment explanation
Indices: 11685494--11685535 Score: 68 Period size: 22 Copynumber: 1.9 Consensus size: 22 11685484 TCTTTTTCTA 11685494 TTTG-TTTTATCTATTTATTTGT 1 TTTGTTTTTATCT-TTTATTTGT 11685516 TTTGTTTTTATCTTTTATTT 1 TTTGTTTTTATCTTTTATTT 11685536 TACTTTACTT Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 22 11 0.58 23 8 0.42 ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76 Consensus pattern (22 bp): TTTGTTTTTATCTTTTATTTGT Found at i:11690551 original size:24 final size:24 Alignment explanation
Indices: 11690517--11690568 Score: 68 Period size: 24 Copynumber: 2.2 Consensus size: 24 11690507 TTTCAAGAAG * ** 11690517 ATTTAGTATTTATGAGTATAATAT 1 ATTTAGCATTTATGAACATAATAT * 11690541 ATTTAGCATTTATTAACATAATAT 1 ATTTAGCATTTATGAACATAATAT 11690565 ATTT 1 ATTT 11690569 GACTTTGATT Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50 Consensus pattern (24 bp): ATTTAGCATTTATGAACATAATAT Found at i:11692886 original size:51 final size:52 Alignment explanation
Indices: 11692826--11693046 Score: 236 Period size: 51 Copynumber: 4.3 Consensus size: 52 11692816 TTCGGTGGGT * * 11692826 TGCACATAGTACCACCCATGTGACCATTGTC-ATCCGATACACGTAGTAGCC 1 TGCACATAGTACTACACATGTGACCATTGTCTATCCGATACACGTAGTAGCC * * * * * * 11692877 TGCACATAGTACTACACATGTGATCA-AG-CTTTTCGGTTCACGTAGTAGCC 1 TGCACATAGTACTACACATGTGACCATTGTCTATCCGATACACGTAGTAGCC * ** * * * * * 11692927 TACACATAGTACTACACACATGACCA-AGGCCATCCGGTACACATAGTAGCC 1 TGCACATAGTACTACACATGTGACCATTGTCTATCCGATACACGTAGTAGCC * * 11692978 TGCACATAGTACTACACATGTGATCATTATCTAT-CGATACACGTAGTAGCC 1 TGCACATAGTACTACACATGTGACCATTGTCTATCCGATACACGTAGTAGCC * 11693029 TGCACTTAGTACTACACA 1 TGCACATAGTACTACACA 11693047 CGTGTTCATA Statistics Matches: 139, Mismatches: 28, Indels: 6 0.80 0.16 0.03 Matches are distributed among these distances: 49 1 0.01 50 41 0.29 51 94 0.68 52 3 0.02 ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25 Consensus pattern (52 bp): TGCACATAGTACTACACATGTGACCATTGTCTATCCGATACACGTAGTAGCC Found at i:11693003 original size:101 final size:101 Alignment explanation
Indices: 11692856--11693047 Score: 287 Period size: 101 Copynumber: 1.9 Consensus size: 101 11692846 TGACCATTGT * * * * 11692856 CATCCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGATCA-AGCTTTTCGGTTCACGT 1 CATCCGATACACATAGTAGCCTGCACATAGTACTACACATGTGATCATAGC-TATCGATACACGT 11692920 AGTAGCCTACACATAGTACTACACACATGACCAAGGC 65 AGTAGCCTACACATAGTACTACACACATGACCAAGGC * * 11692957 CATCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGATCATTATCTATCGATACACGT 1 CATCCGATACACATAGTAGCCTGCACATAGTACTACACATGTGATCA-TAGCTATCGATACACGT * * 11693022 AGTAGCCTGCACTTAGTACTACACAC 65 AGTAGCCTACACATAGTACTACACAC 11693048 GTGTTCATAG Statistics Matches: 81, Mismatches: 8, Indels: 3 0.88 0.09 0.03 Matches are distributed among these distances: 101 45 0.56 102 34 0.42 103 2 0.02 ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25 Consensus pattern (101 bp): CATCCGATACACATAGTAGCCTGCACATAGTACTACACATGTGATCATAGCTATCGATACACGTA GTAGCCTACACATAGTACTACACACATGACCAAGGC Found at i:11700825 original size:54 final size:54 Alignment explanation
Indices: 11700754--11700948 Score: 223 Period size: 54 Copynumber: 3.5 Consensus size: 54 11700744 CCTTACAGTG * 11700754 GGATTACCAATCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA 1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA * * * * * * 11700808 GGATTACCAGTCAAGGCTAAATCCCCAGCAATGACAATTACTC-TAATGAGCT-TGGATCT 1 GGATTACCAGTCCAGGCTAAATCCCCTGTAAT-ATAA--ACTCAT-A-GAG-TATTG-TCA * * * 11700867 GAATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCG 1 GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA 11700921 GGATTACCAGTCCAGGCTAAATCCCCTG 1 GGATTACCAGTCCAGGCTAAATCCCCTG 11700949 CAATGACAAT Statistics Matches: 115, Mismatches: 17, Indels: 18 0.77 0.11 0.12 Matches are distributed among these distances: 54 57 0.50 55 8 0.07 56 6 0.05 57 6 0.05 58 8 0.07 59 30 0.26 ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26 Consensus pattern (54 bp): GGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCA Found at i:11700954 original size:113 final size:113 Alignment explanation
Indices: 11700756--11701001 Score: 447 Period size: 113 Copynumber: 2.2 Consensus size: 113 11700746 TTACAGTGGG * 11700756 ATTACCAATCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCA 1 ATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCA 11700821 AGGCTAAATCCCCAGCAATGACAATTACTCTAATGAGCTTGGATCTGA 66 AGGCTAAATCCCCAGCAATGACAATTACTCTAATGAGCTTGGATCTGA * * * 11700869 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC 1 ATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCA * 11700934 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA 66 AGGCTAAATCCCCAGCAATGACAATTACTCTAATGAGCTTGGATCTGA 11700982 ATTACCAGTCCAGGCTAAAT 1 ATTACCAGTCCAGGCTAAAT 11701002 TCAGACCCTA Statistics Matches: 127, Mismatches: 6, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 113 127 1.00 ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27 Consensus pattern (113 bp): ATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCA AGGCTAAATCCCCAGCAATGACAATTACTCTAATGAGCTTGGATCTGA Found at i:11711141 original size:50 final size:51 Alignment explanation
Indices: 11711070--11711257 Score: 195 Period size: 51 Copynumber: 3.7 Consensus size: 51 11711060 TGTCATCCGA * * 11711070 TACACGTAGTAGCCTACACATAGTACTACACACGTGATCAA-GCTTTCAGG 1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCATTCAGG * * * 11711120 TGCATGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCATTCCGG 1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCATTCAGG * ** * * * 11711171 TACACATAGTAGCCTGGACATAGTACTACACATGTGACCATTA-TC-TATCA-A 1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCA--AGGCAT-TCAGG * * * 11711222 TACACGTAGTAGGCTGCACTTAGTACTACACACGTG 1 TACACGTAGTAGCCTACACATAGTACTACACACGTG 11711258 CTCATAGGTA Statistics Matches: 115, Mismatches: 19, Indels: 7 0.82 0.13 0.05 Matches are distributed among these distances: 50 38 0.33 51 73 0.63 52 3 0.03 53 1 0.01 ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24 Consensus pattern (51 bp): TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCATTCAGG Found at i:11713921 original size:46 final size:46 Alignment explanation
Indices: 11713854--11713941 Score: 117 Period size: 46 Copynumber: 1.9 Consensus size: 46 11713844 ATATGTGCAG * * 11713854 TGTGGGCCTTAGCTAATTACAGT-ATCAGAATCAGAAATAGAATACA 1 TGTGGGCCTAAGCCAATTACAGTGA-CAGAATCAGAAATAGAATACA * 11713900 TGTGGGCCTAAGCCCAA-TACAGTGACAGAATCAGTAATAGAA 1 TGTGGGCCTAAG-CCAATTACAGTGACAGAATCAGAAATAGAA 11713942 ATGCAACAAT Statistics Matches: 37, Mismatches: 3, Indels: 4 0.84 0.07 0.09 Matches are distributed among these distances: 46 33 0.89 47 4 0.11 ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23 Consensus pattern (46 bp): TGTGGGCCTAAGCCAATTACAGTGACAGAATCAGAAATAGAATACA Found at i:11714212 original size:32 final size:31 Alignment explanation
Indices: 11714157--11714295 Score: 154 Period size: 32 Copynumber: 4.4 Consensus size: 31 11714147 GAATGACTAC * * * 11714157 AAGCCATAAGTACAGTAATATGATTGGCACA 1 AAGCCATCAGTACAGTAATATGATCGACACA * * 11714188 AAGCCATCAGTAGCAGTGATATGATCGGCACA 1 AAGCCATCAGTA-CAGTAATATGATCGACACA * * * * 11714220 TAGGCATCAGTAACGGTAATATGATCAACACA 1 AAGCCATCAGT-ACAGTAATATGATCGACACA 11714252 AAGCCATCAGTA-ATGATAATATGATCGACACA 1 AAGCCATCAGTACA-G-TAATATGATCGACACA 11714284 AAGCCATCAGTA 1 AAGCCATCAGTA 11714296 GCATCGTAGC Statistics Matches: 91, Mismatches: 13, Indels: 7 0.82 0.12 0.06 Matches are distributed among these distances: 31 13 0.14 32 77 0.85 33 1 0.01 ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21 Consensus pattern (31 bp): AAGCCATCAGTACAGTAATATGATCGACACA Found at i:11714492 original size:11 final size:11 Alignment explanation
Indices: 11714476--11714518 Score: 50 Period size: 11 Copynumber: 3.7 Consensus size: 11 11714466 AATCAGTCAT 11714476 ACAAATCACAA 1 ACAAATCACAA * 11714487 ACAAATCAGTCAT 1 ACAAATCA--CAA * 11714500 ACCAATCACAA 1 ACAAATCACAA 11714511 ACAAATCA 1 ACAAATCA 11714519 GTCATTTACA Statistics Matches: 26, Mismatches: 4, Indels: 4 0.76 0.12 0.12 Matches are distributed among these distances: 11 17 0.65 13 9 0.35 ACGTcount: A:0.56, C:0.28, G:0.02, T:0.14 Consensus pattern (11 bp): ACAAATCACAA Found at i:11714498 original size:24 final size:24 Alignment explanation
Indices: 11714466--11714523 Score: 107 Period size: 24 Copynumber: 2.4 Consensus size: 24 11714456 CCATGCTCAG 11714466 AATCAGTCATACAAATCACAAACA 1 AATCAGTCATACAAATCACAAACA * 11714490 AATCAGTCATACCAATCACAAACA 1 AATCAGTCATACAAATCACAAACA 11714514 AATCAGTCAT 1 AATCAGTCAT 11714524 TTACATCACC Statistics Matches: 33, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 24 33 1.00 ACGTcount: A:0.50, C:0.26, G:0.05, T:0.19 Consensus pattern (24 bp): AATCAGTCATACAAATCACAAACA Found at i:11714531 original size:24 final size:24 Alignment explanation
Indices: 11714466--11714552 Score: 88 Period size: 24 Copynumber: 3.6 Consensus size: 24 11714456 CCATGCTCAG ** * 11714466 AATCAGTCATACAAATCACAAACA 1 AATCAGTCATTTACATCACAAACA 11714490 AATCAGTCA--TACCAATCACAAACA 1 AATCAGTCATTTA-C-ATCACAAACA ** 11714514 AATCAGTCATTTACATCACCGACA 1 AATCAGTCATTTACATCACAAACA * 11714538 AATCAATCATTTACA 1 AATCAGTCATTTACA 11714553 CTCGAGGGGC Statistics Matches: 54, Mismatches: 5, Indels: 8 0.81 0.07 0.12 Matches are distributed among these distances: 22 1 0.02 24 50 0.93 25 1 0.02 26 2 0.04 ACGTcount: A:0.47, C:0.26, G:0.05, T:0.22 Consensus pattern (24 bp): AATCAGTCATTTACATCACAAACA Found at i:11714625 original size:27 final size:28 Alignment explanation
Indices: 11714589--11714660 Score: 94 Period size: 27 Copynumber: 2.6 Consensus size: 28 11714579 CTCTAGGGGC * * 11714589 ATTACGGTCATTTTACCTGAA-AAGGGT 1 ATTACAGTCATTTTACCTCAATAAGGGT * * 11714616 ATTTCAGTCATTTTACC-CAATGAGGGT 1 ATTACAGTCATTTTACCTCAATAAGGGT 11714643 ATTACAGTCATTTTACCT 1 ATTACAGTCATTTTACCT 11714661 TACAGGGGCA Statistics Matches: 38, Mismatches: 5, Indels: 3 0.83 0.11 0.07 Matches are distributed among these distances: 26 2 0.05 27 36 0.95 ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38 Consensus pattern (28 bp): ATTACAGTCATTTTACCTCAATAAGGGT Found at i:11714673 original size:27 final size:27 Alignment explanation
Indices: 11714583--11714695 Score: 79 Period size: 27 Copynumber: 4.1 Consensus size: 27 11714573 TTTACCCTCT * * * 11714583 AGGGGCATTACGGTCATTTTACCTGAA 1 AGGGGCATTACAGTCATTTTACCTTAC * * * * 11714610 AAGGGTATTTCAGTCATTTTACC-CA- 1 AGGGGCATTACAGTCATTTTACCTTAC * 11714635 ATGAGGGTATTACAGTCATTTTACCTTAC 1 A-G-GGGCATTACAGTCATTTTACCTTAC * * 11714664 AGGGGCATTA-TGATCATTTTACCCTAC 1 AGGGGCATTACAG-TCATTTTACCTTAC 11714691 GAGGG 1 -AGGG 11714696 TATTTCGATC Statistics Matches: 69, Mismatches: 11, Indels: 11 0.76 0.12 0.12 Matches are distributed among these distances: 25 1 0.01 26 2 0.03 27 59 0.86 28 6 0.09 29 1 0.01 ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33 Consensus pattern (27 bp): AGGGGCATTACAGTCATTTTACCTTAC Found at i:11714705 original size:27 final size:27 Alignment explanation
Indices: 11714611--11714978 Score: 385 Period size: 27 Copynumber: 13.7 Consensus size: 27 11714601 TTACCTGAAA 11714611 AGGGTATTTC-AGTCATTTTACCCAAT-G 1 AGGGTATTTCGA-TCATTTTACCC-ATCG * * 11714638 AGGGTATTAC-AGTCATTTTA-CCTTAC- 1 AGGGTATTTCGA-TCATTTTACCCAT-CG * 11714664 AGGGGCATTAT-GATCATTTTACCC-TACG 1 A-GGGTATT-TCGATCATTTTACCCAT-CG * 11714692 AGGGTATTTCGATCATTTTACCGATCG 1 AGGGTATTTCGATCATTTTACCCATCG * * * 11714719 AGGATATTT-TAGTAATTTTACCCATCG 1 AGGGTATTTCGA-TCATTTTACCCATCG ** 11714746 AGGGTATTTCGATCATTTTATTCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * * 11714773 AGGGTATTTCAATAATTTTACCCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * 11714800 AGGGTAGTTCGATCATTTTACCCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * * 11714827 AGGGTATTTTGGTCATTTTACCCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * 11714854 AGGGTATTTCAATCATTTTACCCATC- 1 AGGGTATTTCGATCATTTTACCCATCG * 11714880 AGGGTATTTCGATCATTTTACCCAGCG 1 AGGGTATTTCGATCATTTTACCCATCG * * * * 11714907 GGGGCATTTTGGTCATTTTACCCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * * 11714934 AGGGTATTTCGGTAATTTTACCCATCG 1 AGGGTATTTCGATCATTTTACCCATCG * * 11714961 AGGTTTTTTCGATCATTT 1 AGGGTATTTCGATCATTT 11714979 AACAAATATT Statistics Matches: 286, Mismatches: 43, Indels: 24 0.81 0.12 0.07 Matches are distributed among these distances: 25 1 0.00 26 29 0.10 27 250 0.87 28 6 0.02 ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38 Consensus pattern (27 bp): AGGGTATTTCGATCATTTTACCCATCG Found at i:11716751 original size:40 final size:41 Alignment explanation
Indices: 11716692--11716783 Score: 132 Period size: 44 Copynumber: 2.2 Consensus size: 41 11716682 GATTCCCTTC 11716692 CATTTTCTGTCTGT-TTGTTTCTAGTTAATCCGGGTAACTT 1 CATTTTCTGTCTGTCTTGTTTCTAGTTAATCCGGGTAACTT * * 11716732 CATTTTCTGTCTAGCTGTTTGTTTCTGGTTAATCCGGGTAACTT 1 CATTTTCTGTCT-G-T-CTTGTTTCTAGTTAATCCGGGTAACTT 11716776 CATTTTCT 1 CATTTTCT 11716784 TGTTCTTGTT Statistics Matches: 47, Mismatches: 1, Indels: 4 0.90 0.02 0.08 Matches are distributed among these distances: 40 12 0.26 41 1 0.02 42 1 0.02 44 33 0.70 ACGTcount: A:0.14, C:0.18, G:0.17, T:0.50 Consensus pattern (41 bp): CATTTTCTGTCTGTCTTGTTTCTAGTTAATCCGGGTAACTT Found at i:11717955 original size:11 final size:11 Alignment explanation
Indices: 11717939--11717973 Score: 61 Period size: 11 Copynumber: 3.2 Consensus size: 11 11717929 TTTTCCAAAC 11717939 TTGTTTTTTTT 1 TTGTTTTTTTT * 11717950 TTGTTTTTGTT 1 TTGTTTTTTTT 11717961 TTGTTTTTTTT 1 TTGTTTTTTTT 11717972 TT 1 TT 11717974 TTTGCGTTAA Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 22 1.00 ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89 Consensus pattern (11 bp): TTGTTTTTTTT Found at i:11718558 original size:5 final size:5 Alignment explanation
Indices: 11718548--11718577 Score: 60 Period size: 5 Copynumber: 6.0 Consensus size: 5 11718538 TTGCTTTTAG 11718548 AATTT AATTT AATTT AATTT AATTT AATTT 1 AATTT AATTT AATTT AATTT AATTT AATTT 11718578 TACTTTGTAC Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 25 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (5 bp): AATTT Found at i:11718678 original size:73 final size:73 Alignment explanation
Indices: 11718593--11718740 Score: 296 Period size: 73 Copynumber: 2.0 Consensus size: 73 11718583 TGTACAATAT 11718593 TTTGCAATTAAATGCAGGATTAGTAGATTTTCTAGATGATAATTTGTGTCATTATCTCAAAACAT 1 TTTGCAATTAAATGCAGGATTAGTAGATTTTCTAGATGATAATTTGTGTCATTATCTCAAAACAT 11718658 TGCTATGA 66 TGCTATGA 11718666 TTTGCAATTAAATGCAGGATTAGTAGATTTTCTAGATGATAATTTGTGTCATTATCTCAAAACAT 1 TTTGCAATTAAATGCAGGATTAGTAGATTTTCTAGATGATAATTTGTGTCATTATCTCAAAACAT 11718731 TGCTATGA 66 TGCTATGA 11718739 TT 1 TT 11718741 ATTGATTCCT Statistics Matches: 75, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 73 75 1.00 ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41 Consensus pattern (73 bp): TTTGCAATTAAATGCAGGATTAGTAGATTTTCTAGATGATAATTTGTGTCATTATCTCAAAACAT TGCTATGA Found at i:11720786 original size:22 final size:23 Alignment explanation
Indices: 11720761--11720815 Score: 69 Period size: 22 Copynumber: 2.5 Consensus size: 23 11720751 TGTACTATGA * 11720761 TGCCTACTGATTCA-CACTTCGG 1 TGCCTACTGATTAATCACTTCGG * * 11720783 TGCCTACT-ACTAATCACTTTGG 1 TGCCTACTGATTAATCACTTCGG 11720805 TGCCTACTGAT 1 TGCCTACTGAT 11720816 ATGGTGTAGT Statistics Matches: 27, Mismatches: 4, Indels: 3 0.79 0.12 0.09 Matches are distributed among these distances: 21 3 0.11 22 23 0.85 23 1 0.04 ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35 Consensus pattern (23 bp): TGCCTACTGATTAATCACTTCGG Found at i:11721460 original size:16 final size:16 Alignment explanation
Indices: 11721439--11721469 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 11721429 TTCATTATTA * 11721439 TGTCTTTTGTATTTTT 1 TGTCTTTTATATTTTT 11721455 TGTCTTTTATATTTT 1 TGTCTTTTATATTTT 11721470 GCATGCATAG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74 Consensus pattern (16 bp): TGTCTTTTATATTTTT Found at i:11730832 original size:68 final size:70 Alignment explanation
Indices: 11730723--11730851 Score: 165 Period size: 68 Copynumber: 1.9 Consensus size: 70 11730713 TTTTAATAGT * 11730723 TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTT-ATTA-ATTTAATATTAAAGTAA 1 TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTTAATAAGATTTAATATTAAAGTAA 11730786 TTATC 66 TTATC ** * ** * 11730791 TTAATATTAAATTAAATTTAATGTTTATCATT-CTATTATTTTAATAAGATTTACTATTAAA 1 TTAATATTAAATTAAATTTAATACTTAT-ATTAATAGCATTTTAATAAGATTTAATATTAAA 11730852 TTTAATCTAA Statistics Matches: 51, Mismatches: 7, Indels: 4 0.82 0.11 0.06 Matches are distributed among these distances: 68 33 0.65 69 6 0.12 70 12 0.24 ACGTcount: A:0.43, C:0.05, G:0.03, T:0.50 Consensus pattern (70 bp): TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTTAATAAGATTTAATATTAAAGTAA TTATC Found at i:11730914 original size:15 final size:17 Alignment explanation
Indices: 11730853--11730913 Score: 74 Period size: 17 Copynumber: 3.8 Consensus size: 17 11730843 ACTATTAAAT 11730853 TTAATCTAATATTTATC 1 TTAATCTAATATTTATC 11730870 TTAATCTAATATTTATC 1 TTAATCTAATATTTATC * * * 11730887 TTGAT-AAATA-TTATA 1 TTAATCTAATATTTATC 11730902 TTAAT-TAATATT 1 TTAATCTAATATT 11730914 AAAGTGATTA Statistics Matches: 38, Mismatches: 5, Indels: 3 0.83 0.11 0.07 Matches are distributed among these distances: 15 12 0.32 16 5 0.13 17 21 0.55 ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52 Consensus pattern (17 bp): TTAATCTAATATTTATC Found at i:11745726 original size:11 final size:13 Alignment explanation
Indices: 11745702--11745733 Score: 50 Period size: 12 Copynumber: 2.6 Consensus size: 13 11745692 TAGTTTATTA 11745702 ATATTTTAATATG 1 ATATTTTAATATG 11745715 AT-TTTTAA-ATG 1 ATATTTTAATATG 11745726 ATATTTTA 1 ATATTTTA 11745734 TTAATTTATT Statistics Matches: 18, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 11 5 0.28 12 11 0.61 13 2 0.11 ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56 Consensus pattern (13 bp): ATATTTTAATATG Found at i:11747718 original size:2 final size:2 Alignment explanation
Indices: 11747711--11747738 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 11747701 CAAAAACAAG 11747711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 11747739 GTAAAATGAG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:11758413 original size:29 final size:29 Alignment explanation
Indices: 11758377--11758440 Score: 128 Period size: 29 Copynumber: 2.2 Consensus size: 29 11758367 AGCTCCATCC 11758377 AACAAATAGGTGTTCTACAGCTTCTACCA 1 AACAAATAGGTGTTCTACAGCTTCTACCA 11758406 AACAAATAGGTGTTCTACAGCTTCTACCA 1 AACAAATAGGTGTTCTACAGCTTCTACCA 11758435 AACAAA 1 AACAAA 11758441 GCTTCGAATG Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 29 35 1.00 ACGTcount: A:0.39, C:0.23, G:0.12, T:0.25 Consensus pattern (29 bp): AACAAATAGGTGTTCTACAGCTTCTACCA Found at i:11766802 original size:30 final size:30 Alignment explanation
Indices: 11766767--11766827 Score: 122 Period size: 30 Copynumber: 2.0 Consensus size: 30 11766757 AGATGTTATT 11766767 TTTAATGAAACTTTTATGTTGTCTAACTTA 1 TTTAATGAAACTTTTATGTTGTCTAACTTA 11766797 TTTAATGAAACTTTTATGTTGTCTAACTTA 1 TTTAATGAAACTTTTATGTTGTCTAACTTA 11766827 T 1 T 11766828 CTCTTAAAGA Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 30 31 1.00 ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51 Consensus pattern (30 bp): TTTAATGAAACTTTTATGTTGTCTAACTTA Found at i:11782692 original size:21 final size:21 Alignment explanation
Indices: 11782659--11782699 Score: 64 Period size: 21 Copynumber: 2.0 Consensus size: 21 11782649 GTCCTCCTAT * 11782659 TTTTCTTTAATTTTATTTTTG 1 TTTTATTTAATTTTATTTTTG * 11782680 TTTTATTTTATTTTATTTTT 1 TTTTATTTAATTTTATTTTT 11782700 TTATTTTTAT Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 21 18 1.00 ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80 Consensus pattern (21 bp): TTTTATTTAATTTTATTTTTG Found at i:11782699 original size:16 final size:16 Alignment explanation
Indices: 11782656--11782710 Score: 62 Period size: 16 Copynumber: 3.6 Consensus size: 16 11782646 CTAGTCCTCC * * 11782656 TATTTTTCTTTAATTT 1 TATTTTTATTTTATTT * 11782672 TATTTTTGTTTTATTT 1 TATTTTTATTTTATTT 11782688 TA-TTTTA-TTT-TTT 1 TATTTTTATTTTATTT 11782701 TATTTTTATT 1 TATTTTTATT 11782711 GATTTGATGC Statistics Matches: 34, Mismatches: 3, Indels: 5 0.81 0.07 0.12 Matches are distributed among these distances: 13 5 0.15 14 8 0.24 15 5 0.15 16 16 0.47 ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80 Consensus pattern (16 bp): TATTTTTATTTTATTT Found at i:11784817 original size:20 final size:20 Alignment explanation
Indices: 11784792--11784831 Score: 80 Period size: 20 Copynumber: 2.0 Consensus size: 20 11784782 AAGATCTAGC 11784792 CCTGTGACATAAGTACTAAG 1 CCTGTGACATAAGTACTAAG 11784812 CCTGTGACATAAGTACTAAG 1 CCTGTGACATAAGTACTAAG 11784832 TTAGGTTTTA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 20 1.00 ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25 Consensus pattern (20 bp): CCTGTGACATAAGTACTAAG Found at i:11795291 original size:24 final size:23 Alignment explanation
Indices: 11795247--11795291 Score: 54 Period size: 23 Copynumber: 1.9 Consensus size: 23 11795237 TAATAATTTT ** 11795247 ATTTTTATGATACATTTTTTTAA 1 ATTTTTATGATACATGCTTTTAA * 11795270 ATTTTTATGTATATATGCTTTT 1 ATTTTTATG-ATACATGCTTTT 11795292 GTGCTTTAAA Statistics Matches: 18, Mismatches: 3, Indels: 1 0.82 0.14 0.05 Matches are distributed among these distances: 23 9 0.50 24 9 0.50 ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62 Consensus pattern (23 bp): ATTTTTATGATACATGCTTTTAA Found at i:11799392 original size:39 final size:38 Alignment explanation
Indices: 11799343--11799439 Score: 117 Period size: 39 Copynumber: 2.5 Consensus size: 38 11799333 GATATAATTT * * 11799343 AATGAAATACATAAATATAATA-ATACATGATA-ATGCATG 1 AATGAAATACATAAATATAATACATA-ATAATATAT--ATA * 11799382 AATGCAATACATAAATATAATACATAATAATATATATA 1 AATGAAATACATAAATATAATACATAATAATATATATA * 11799420 AATGTAATACATAAATATAA 1 AATGAAATACATAAATATAA 11799440 CAAGGATAAG Statistics Matches: 52, Mismatches: 4, Indels: 5 0.85 0.07 0.08 Matches are distributed among these distances: 38 21 0.40 39 26 0.50 40 5 0.10 ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30 Consensus pattern (38 bp): AATGAAATACATAAATATAATACATAATAATATATATA Found at i:11799415 original size:15 final size:13 Alignment explanation
Indices: 11799348--11799439 Score: 82 Period size: 13 Copynumber: 7.2 Consensus size: 13 11799338 AATTTAATGA 11799348 AATACATAAATAT 1 AATACATAAATAT * 11799361 AATA-ATACATGAT 1 AATACATAAAT-AT * * ** 11799374 AATGCATGAATGC 1 AATACATAAATAT 11799387 AATACATAAATAT 1 AATACATAAATAT 11799400 AATACAT-AATA- 1 AATACATAAATAT * * 11799411 ATATATATAAATGT 1 A-ATACATAAATAT 11799425 AATACATAAATAT 1 AATACATAAATAT 11799438 AA 1 AA 11799440 CAAGGATAAG Statistics Matches: 60, Mismatches: 14, Indels: 10 0.71 0.17 0.12 Matches are distributed among these distances: 11 1 0.02 12 14 0.23 13 40 0.67 14 5 0.08 ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30 Consensus pattern (13 bp): AATACATAAATAT Found at i:11800718 original size:23 final size:24 Alignment explanation
Indices: 11800677--11800726 Score: 75 Period size: 23 Copynumber: 2.1 Consensus size: 24 11800667 TGGACTTTAT 11800677 TTTTTTTATTTTGGGTTTGTTTGA 1 TTTTTTTATTTTGGGTTTGTTTGA * * 11800701 TTTTTTTATTTT-GTTTTGTTTTA 1 TTTTTTTATTTTGGGTTTGTTTGA 11800724 TTT 1 TTT 11800727 ATTTGGGTTT Statistics Matches: 24, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 23 12 0.50 24 12 0.50 ACGTcount: A:0.08, C:0.00, G:0.14, T:0.78 Consensus pattern (24 bp): TTTTTTTATTTTGGGTTTGTTTGA Found at i:11800731 original size:18 final size:18 Alignment explanation
Indices: 11800692--11800730 Score: 53 Period size: 19 Copynumber: 2.1 Consensus size: 18 11800682 TTATTTTGGG 11800692 TTTGTTTGATTTTTTTAT 1 TTTGTTTGATTTTTTTAT 11800710 TTTGTTTTG-TTTTATTTAT 1 TTTG-TTTGATTTT-TTTAT 11800729 TT 1 TT 11800731 GGGTTTATTT Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 18 8 0.42 19 11 0.58 ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79 Consensus pattern (18 bp): TTTGTTTGATTTTTTTAT Found at i:11802305 original size:18 final size:17 Alignment explanation
Indices: 11802282--11802324 Score: 50 Period size: 18 Copynumber: 2.4 Consensus size: 17 11802272 ATACAAGTAC * 11802282 TTTGGTTGGTAATGTGAA 1 TTTGGTTGATAAT-TGAA 11802300 TTTGGTTTGATAATTGAA 1 TTTGG-TTGATAATTGAA 11802318 TTGTGGT 1 TT-TGGT 11802325 GCCAATAATG Statistics Matches: 22, Mismatches: 1, Indels: 4 0.81 0.04 0.15 Matches are distributed among these distances: 18 12 0.55 19 10 0.45 ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49 Consensus pattern (17 bp): TTTGGTTGATAATTGAA Found at i:11804667 original size:18 final size:17 Alignment explanation
Indices: 11804621--11804668 Score: 53 Period size: 18 Copynumber: 2.8 Consensus size: 17 11804611 TAAAATTGTT 11804621 ATGTGAAGTGAATAAGC 1 ATGTGAAGTGAATAAGC * * 11804638 -TCGTGAATTGAACTAGGC 1 AT-GTGAAGTGAA-TAAGC 11804656 ATGTGAAGTGAAT 1 ATGTGAAGTGAAT 11804669 TAAATATGTG Statistics Matches: 25, Mismatches: 3, Indels: 6 0.74 0.09 0.18 Matches are distributed among these distances: 16 1 0.04 17 10 0.40 18 13 0.52 19 1 0.04 ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27 Consensus pattern (17 bp): ATGTGAAGTGAATAAGC Found at i:11807828 original size:29 final size:30 Alignment explanation
Indices: 11807767--11807831 Score: 80 Period size: 29 Copynumber: 2.2 Consensus size: 30 11807757 TATATATAAT * 11807767 ATATATTTATAAAAATATAAAAGAATTACA 1 ATATATTTAGAAAAATATAAAAGAATTACA * * 11807797 ATAT-TTTAGAAAACATATAAAA-ATTTATA 1 ATATATTTAGAAAA-ATATAAAAGAATTACA 11807826 ATATAT 1 ATATAT 11807832 AAATTAATAA Statistics Matches: 30, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 29 17 0.57 30 13 0.43 ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37 Consensus pattern (30 bp): ATATATTTAGAAAAATATAAAAGAATTACA Found at i:11807835 original size:15 final size:15 Alignment explanation
Indices: 11807811--11807866 Score: 50 Period size: 15 Copynumber: 4.1 Consensus size: 15 11807801 TTTAGAAAAC * 11807811 ATATAAAAATTTATA 1 ATATATAAATTTATA 11807826 ATATATAAA--T-TA 1 ATATATAAATTTATA 11807838 ATA-A-AAATTTATA 1 ATATATAAATTTATA * * 11807851 ATTTATAATTTTATA 1 ATATATAAATTTATA 11807866 A 1 A 11807867 AAATATATAA Statistics Matches: 33, Mismatches: 3, Indels: 10 0.72 0.07 0.22 Matches are distributed among these distances: 10 3 0.09 11 1 0.03 12 6 0.18 13 5 0.15 14 1 0.03 15 17 0.52 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (15 bp): ATATATAAATTTATA Found at i:11807841 original size:25 final size:25 Alignment explanation
Indices: 11807813--11807885 Score: 92 Period size: 25 Copynumber: 2.9 Consensus size: 25 11807803 TAGAAAACAT 11807813 ATAAAAATTTATAATATATAAATTA 1 ATAAAAATTTATAATATATAAATTA * * * 11807838 ATAAAAATTTATAATTTATAATTTT 1 ATAAAAATTTATAATATATAAATTA * * 11807863 ATAAAAATATATAAACATATAAA 1 ATAAAAATTTAT-AATATATAAA 11807886 AGAACTAAAA Statistics Matches: 40, Mismatches: 7, Indels: 1 0.83 0.15 0.02 Matches are distributed among these distances: 25 33 0.82 26 7 0.17 ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40 Consensus pattern (25 bp): ATAAAAATTTATAATATATAAATTA Found at i:11810969 original size:44 final size:44 Alignment explanation
Indices: 11810832--11811169 Score: 134 Period size: 44 Copynumber: 7.8 Consensus size: 44 11810822 ACTTGATGCG * * * * * 11810832 ATCTGCTCTATTGCAACCTCAGAGAGATAAGATCTATTACTTTA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA * ** * * * * * 11810876 ATCCGCTCCACCACAACCTCAGGGAAATAGGAT-TATCGACTTTA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCT-TACTTCA * 11810920 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTT-CTTCA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCT-CTTACTTCA * * * ** * * * * 11810964 GTCTGCCCCATTGTGACTTTAGGGGGATAAGACCTGCTTAC-TCA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCT-CTTACTTCA * * * * * * * 11811008 GTCTGCTCTACTACAACCTCAGGAAGATAAGA-C-CTGA-TGCG 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA ** * * * * * * 11811049 ATCCACTCTACTGCAACTTTAGAGAGATAAGATCTATTACTTTA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA * * * * * * * 11811093 ATCCGCTCCACTACAACTTCAAGGAGATAGGATTATCGGT--TTCA 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA-TCTC-TTACTTCA * * * * 11811137 ATCTGCTCCGCTGTAACTTCAGCGAGATAAGAT 1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGAT 11811170 TTGTAGTTTC Statistics Matches: 213, Mismatches: 71, Indels: 21 0.70 0.23 0.07 Matches are distributed among these distances: 41 28 0.13 42 1 0.00 43 7 0.03 44 171 0.80 45 4 0.02 46 2 0.01 ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28 Consensus pattern (44 bp): ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA Found at i:11812498 original size:15 final size:14 Alignment explanation
Indices: 11812471--11812522 Score: 61 Period size: 14 Copynumber: 3.6 Consensus size: 14 11812461 TTAGCCTCTC 11812471 CATTTTTACTTTTT 1 CATTTTTACTTTTT * 11812485 CATTTTTCATTTTTT 1 CATTTTT-ACTTTTT 11812500 CATTTTTTACTCTTTT 1 CA-TTTTTACT-TTTT 11812516 -ATTTTTA 1 CATTTTTA 11812523 GTTTGAGGAA Statistics Matches: 33, Mismatches: 2, Indels: 6 0.80 0.05 0.15 Matches are distributed among these distances: 14 13 0.39 15 11 0.33 16 9 0.27 ACGTcount: A:0.15, C:0.13, G:0.00, T:0.71 Consensus pattern (14 bp): CATTTTTACTTTTT Found at i:11828559 original size:12 final size:12 Alignment explanation
Indices: 11828529--11828561 Score: 50 Period size: 11 Copynumber: 2.8 Consensus size: 12 11828519 TTGGGTGTTG 11828529 TCTTTTATTTAA 1 TCTTTTATTTAA * 11828541 T-TTTTATTTAC 1 TCTTTTATTTAA 11828552 TCTTTTATTT 1 TCTTTTATTT 11828562 TTATTATTTC Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 11 10 0.53 12 9 0.47 ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73 Consensus pattern (12 bp): TCTTTTATTTAA Found at i:11830164 original size:3 final size:3 Alignment explanation
Indices: 11830156--11830209 Score: 90 Period size: 3 Copynumber: 18.0 Consensus size: 3 11830146 TATATATAGG * * 11830156 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAA 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 11830204 AAT AAT 1 AAT AAT 11830210 GGAGCTGTTA Statistics Matches: 47, Mismatches: 4, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 3 47 1.00 ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31 Consensus pattern (3 bp): AAT Found at i:11835760 original size:23 final size:24 Alignment explanation
Indices: 11835715--11835760 Score: 67 Period size: 24 Copynumber: 2.0 Consensus size: 24 11835705 GCGCATTATG * * 11835715 TTGGCCTTTGTGGTGTACTTCTGT 1 TTGGCCTTTGTGGCGTACATCTGT 11835739 TTGGCCTTTGTGGCGTA-ATCTG 1 TTGGCCTTTGTGGCGTACATCTG 11835761 CTAAGCCTAT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 23 4 0.20 24 16 0.80 ACGTcount: A:0.07, C:0.17, G:0.30, T:0.46 Consensus pattern (24 bp): TTGGCCTTTGTGGCGTACATCTGT Found at i:11838879 original size:42 final size:42 Alignment explanation
Indices: 11838801--11838904 Score: 113 Period size: 42 Copynumber: 2.5 Consensus size: 42 11838791 AACCCTACTG * 11838801 GGTTTCCGTTCAGCTCTTTTGACCTTCAGCTTAACCCTTATA 1 GGTTTCCGTTCAGCTCTTATGACCTTCAGCTTAACCCTTATA * * * 11838843 GGTTTTCGTTCAGCTCTTATGAGCTTTC-G-TTCAACCCTTATG 1 GGTTTCCGTTCAGCTCTTATGA-CCTTCAGCTT-AACCCTTATA * * * 11838885 GGTTTCTGTTTAGCACTTAT 1 GGTTTCCGTTCAGCTCTTAT 11838905 ATGCTTCTAT Statistics Matches: 52, Mismatches: 8, Indels: 4 0.81 0.12 0.06 Matches are distributed among these distances: 41 2 0.04 42 46 0.88 43 4 0.08 ACGTcount: A:0.15, C:0.24, G:0.17, T:0.43 Consensus pattern (42 bp): GGTTTCCGTTCAGCTCTTATGACCTTCAGCTTAACCCTTATA Found at i:11839643 original size:13 final size:13 Alignment explanation
Indices: 11839625--11839649 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 11839615 TAAGTTATAT 11839625 GTGTGAAAATTTC 1 GTGTGAAAATTTC 11839638 GTGTGAAAATTT 1 GTGTGAAAATTT 11839650 GATAGTTTGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40 Consensus pattern (13 bp): GTGTGAAAATTTC Found at i:11841356 original size:41 final size:41 Alignment explanation
Indices: 11841311--11841497 Score: 234 Period size: 41 Copynumber: 4.6 Consensus size: 41 11841301 CGTTTAAAAC * * * * 11841311 CTAGCAGGCTTAAG-GCCGGTGAAGTTATTTGGACTTTATGT 1 CTAGCAGGCTT-TGTGCCGGTGAAATAATTCGGACTTTATGT * 11841352 CTAGCAGGCTTTGTGCCAGTGAAATAATTCGGACTTTATGT 1 CTAGCAGGCTTTGTGCCGGTGAAATAATTCGGACTTTATGT 11841393 CTAGCAGGCTTTGTGCCGGTGAAATAATTCGGACTTTATGT 1 CTAGCAGGCTTTGTGCCGGTGAAATAATTCGGACTTTATGT * * * ** * 11841434 CTAACAGGCTTTGTGCTGGTGAAATAATTTGGACGATAAGT 1 CTAGCAGGCTTTGTGCCGGTGAAATAATTCGGACTTTATGT * 11841475 CTAGCAGGCTAAT-TGCCGGTGAA 1 CTAGCAGGCT-TTGTGCCGGTGAA 11841498 TTGAATCGGG Statistics Matches: 129, Mismatches: 15, Indels: 4 0.87 0.10 0.03 Matches are distributed among these distances: 40 1 0.01 41 127 0.98 42 1 0.01 ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32 Consensus pattern (41 bp): CTAGCAGGCTTTGTGCCGGTGAAATAATTCGGACTTTATGT Found at i:11848822 original size:41 final size:42 Alignment explanation
Indices: 11848777--11848922 Score: 122 Period size: 41 Copynumber: 3.6 Consensus size: 42 11848767 TGTTTAAAAC * * 11848777 CTAGCAAGCTTAAG-GCCGGTGAAGTTATTCAGACTTTATGT 1 CTAGCAAGCTTAAGTGCCGGTGAAATAATTCAGACTTTATGT * ** * 11848818 CTAGC-AGGTTTTGTGCCGGTGAAATAATTCGGACTTTATGT 1 CTAGCAAGCTTAAGTGCCGGTGAAATAATTCAGACTTTATGT * * * * * * 11848859 CTAGCAGGCTT-TGTGCTGGTGAAATAATTCGGACGATAAT-T 1 CTAGCAAGCTTAAGTGCCGGTGAAATAATTCAGAC-TTTATGT * * 11848900 CTAGCAGGC-TAATTGCCGGTGAA 1 CTAGCAAGCTTAAGTGCCGGTGAA 11848923 TTGAATCGGG Statistics Matches: 87, Mismatches: 14, Indels: 8 0.80 0.13 0.07 Matches are distributed among these distances: 40 6 0.07 41 75 0.86 42 6 0.07 ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32 Consensus pattern (42 bp): CTAGCAAGCTTAAGTGCCGGTGAAATAATTCAGACTTTATGT Found at i:11853653 original size:21 final size:23 Alignment explanation
Indices: 11853627--11853677 Score: 75 Period size: 23 Copynumber: 2.2 Consensus size: 23 11853617 AATCAAATTG * * 11853627 ACACACATAAAACACTGAATATA 1 ACACACACAAGACACTGAATATA * 11853650 ACACACACAAGATACTGAATATA 1 ACACACACAAGACACTGAATATA 11853673 ACACA 1 ACACA 11853678 AATAGAGCAT Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 23 25 1.00 ACGTcount: A:0.55, C:0.24, G:0.06, T:0.16 Consensus pattern (23 bp): ACACACACAAGACACTGAATATA Found at i:11854836 original size:9 final size:9 Alignment explanation
Indices: 11854822--11854919 Score: 69 Period size: 10 Copynumber: 10.6 Consensus size: 9 11854812 ATATAAACTT 11854822 TAAAAATTA 1 TAAAAATTA 11854831 TAAAAAATTA 1 T-AAAAATTA * 11854841 TAAGAAATCA 1 TAA-AAATTA * 11854851 TACAAACTTA 1 TA-AAAATTA * 11854861 TAAATATTA 1 TAAAAATTA 11854870 TAAAAAATTA 1 T-AAAAATTA 11854880 T-AAAATCTA 1 TAAAAAT-TA * 11854889 -ATAAATT- 1 TAAAAATTA 11854896 TAAAAAATTA 1 T-AAAAATTA 11854906 T-AAAATTGA 1 TAAAAATT-A 11854915 TAAAA 1 TAAAA 11854920 CATATTTAAA Statistics Matches: 70, Mismatches: 8, Indels: 21 0.71 0.08 0.21 Matches are distributed among these distances: 8 12 0.17 9 23 0.33 10 34 0.49 11 1 0.01 ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32 Consensus pattern (9 bp): TAAAAATTA Found at i:11854836 original size:10 final size:10 Alignment explanation
Indices: 11854823--11854910 Score: 78 Period size: 10 Copynumber: 9.3 Consensus size: 10 11854813 TATAAACTTT 11854823 AAAAATTATA 1 AAAAATTATA 11854833 AAAAATTATA 1 AAAAATTATA * * 11854843 AGAAATCATA 1 AAAAATTATA * * 11854853 CAAACTTAT- 1 AAAAATTATA * 11854862 AAATATTATA 1 AAAAATTATA 11854872 AAAAATTAT- 1 AAAAATTATA * 11854881 -AAAA-TCTA 1 AAAAATTATA * 11854889 ATAAATT-TA 1 AAAAATTATA 11854898 AAAAATTATA 1 AAAAATTATA 11854908 AAA 1 AAA 11854911 TTGATAAAAC Statistics Matches: 60, Mismatches: 13, Indels: 10 0.72 0.16 0.12 Matches are distributed among these distances: 7 2 0.03 8 4 0.07 9 17 0.28 10 37 0.62 ACGTcount: A:0.64, C:0.05, G:0.01, T:0.31 Consensus pattern (10 bp): AAAAATTATA Found at i:11854861 original size:20 final size:19 Alignment explanation
Indices: 11854816--11854910 Score: 72 Period size: 18 Copynumber: 5.1 Consensus size: 19 11854806 AAATTGATAT * 11854816 AAACTT-TAAAAATTATAA 1 AAACTTATAAAAATCATAA * * 11854834 AAAATTATAAGAAATCATAC 1 AAACTTATAA-AAATCATAA * * 11854854 AAACTTATAAATATTATAA 1 AAACTTATAAAAATCATAA * 11854873 AAAATTAT-AAAATC-TAA 1 AAACTTATAAAAATCATAA * * 11854890 TAAATTTA-AAAAATTATAA 1 -AAACTTATAAAAATCATAA 11854909 AA 1 AA 11854911 TTGATAAAAC Statistics Matches: 60, Mismatches: 12, Indels: 10 0.73 0.15 0.12 Matches are distributed among these distances: 17 3 0.05 18 22 0.37 19 19 0.32 20 16 0.27 ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32 Consensus pattern (19 bp): AAACTTATAAAAATCATAA Found at i:11854872 original size:29 final size:29 Alignment explanation
Indices: 11854828--11854911 Score: 77 Period size: 29 Copynumber: 3.0 Consensus size: 29 11854818 ACTTTAAAAA * * 11854828 TTATAAAAAATTATAAGAAATCATACAAA-C 1 TTAT-AAATATTATAAAAAATCATA-AAATC * 11854858 TTATAAATATTATAAAAAATTATAAAATC 1 TTATAAATATTATAAAAAATCATAAAATC * * 11854887 TAAT-AA-ATT-TAAAAAATTATAAAAT 1 TTATAAATATTATAAAAAATCATAAAAT 11854912 TGATAAAACA Statistics Matches: 49, Mismatches: 4, Indels: 6 0.83 0.07 0.10 Matches are distributed among these distances: 26 16 0.33 27 3 0.06 28 5 0.10 29 21 0.43 30 4 0.08 ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33 Consensus pattern (29 bp): TTATAAATATTATAAAAAATCATAAAATC Found at i:11854989 original size:19 final size:18 Alignment explanation
Indices: 11854967--11855018 Score: 61 Period size: 19 Copynumber: 2.8 Consensus size: 18 11854957 ATAAATTCTA * 11854967 ATAAATTATAAAAATATAT 1 ATAAATTATAAAAAAAT-T 11854986 ATAAA-TACTAAAAAAATT 1 ATAAATTA-TAAAAAAATT * 11855004 AGAAATTATAAAAAA 1 ATAAATTATAAAAAA 11855019 TAAAGTCTTA Statistics Matches: 29, Mismatches: 2, Indels: 5 0.81 0.06 0.14 Matches are distributed among these distances: 18 14 0.48 19 15 0.52 ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29 Consensus pattern (18 bp): ATAAATTATAAAAAAATT Found at i:11855388 original size:22 final size:22 Alignment explanation
Indices: 11855328--11855385 Score: 68 Period size: 19 Copynumber: 2.7 Consensus size: 22 11855318 AATCTTCAAG 11855328 GATATGCAATCTT---AGATAT 1 GATATGCAATCTTAGAAGATAT 11855347 GATATGCAATCTTAGAAGATAT 1 GATATGCAATCTTAGAAGATAT * * 11855369 GATTTTGTAATCTTAGA 1 GA-TATGCAATCTTAGA 11855386 GATTTAATTT Statistics Matches: 33, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 19 13 0.39 22 8 0.24 23 12 0.36 ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38 Consensus pattern (22 bp): GATATGCAATCTTAGAAGATAT Found at i:11855664 original size:7 final size:7 Alignment explanation
Indices: 11855652--11855682 Score: 62 Period size: 7 Copynumber: 4.4 Consensus size: 7 11855642 GATTTAGTCC 11855652 TTTTTTA 1 TTTTTTA 11855659 TTTTTTA 1 TTTTTTA 11855666 TTTTTTA 1 TTTTTTA 11855673 TTTTTTA 1 TTTTTTA 11855680 TTT 1 TTT 11855683 ATTTTTATTA Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 24 1.00 ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87 Consensus pattern (7 bp): TTTTTTA Found at i:11855706 original size:21 final size:22 Alignment explanation
Indices: 11855680--11855728 Score: 64 Period size: 21 Copynumber: 2.3 Consensus size: 22 11855670 TTATTTTTTA * 11855680 TTTATTTTTATTAAAT-TTAAT 1 TTTATTGTTATTAAATATTAAT * * 11855701 TTTATTGTTATTAAGTATTATT 1 TTTATTGTTATTAAATATTAAT 11855723 TTTATT 1 TTTATT 11855729 ATATATTCAT Statistics Matches: 24, Mismatches: 3, Indels: 1 0.86 0.11 0.04 Matches are distributed among these distances: 21 14 0.58 22 10 0.42 ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67 Consensus pattern (22 bp): TTTATTGTTATTAAATATTAAT Found at i:11858011 original size:25 final size:25 Alignment explanation
Indices: 11857980--11858029 Score: 82 Period size: 25 Copynumber: 2.0 Consensus size: 25 11857970 ATGTATTTAC * * 11857980 CATTCAATTTAACGTTTATCGATTA 1 CATTCAATTCAACGTTTATCAATTA 11858005 CATTCAATTCAACGTTTATCAATTA 1 CATTCAATTCAACGTTTATCAATTA 11858030 TATTTGGGCA Statistics Matches: 23, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 25 23 1.00 ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42 Consensus pattern (25 bp): CATTCAATTCAACGTTTATCAATTA Found at i:11858910 original size:14 final size:14 Alignment explanation
Indices: 11858891--11858943 Score: 54 Period size: 14 Copynumber: 3.8 Consensus size: 14 11858881 TTTTGCCAGC 11858891 AAAATATTTTCCGG 1 AAAATATTTTCCGG * * 11858905 AAAATAATTTCTGG 1 AAAATATTTTCCGG * * 11858919 AAAATGA-TTTACTG 1 AAAAT-ATTTTCCGG 11858933 AAAATATTTTC 1 AAAATATTTTC 11858944 TGGTGTTTGG Statistics Matches: 31, Mismatches: 6, Indels: 4 0.76 0.15 0.10 Matches are distributed among these distances: 13 1 0.03 14 29 0.94 15 1 0.03 ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38 Consensus pattern (14 bp): AAAATATTTTCCGG Found at i:11859052 original size:22 final size:20 Alignment explanation
Indices: 11859029--11859067 Score: 69 Period size: 20 Copynumber: 1.9 Consensus size: 20 11859019 ATTTTTACAT 11859029 ATATTAATAAATTTATATAC 1 ATATTAATAAATTTATATAC * 11859049 ATATTAATAAATTTTTATA 1 ATATTAATAAATTTATATA 11859068 TTTTAAATTG Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49 Consensus pattern (20 bp): ATATTAATAAATTTATATAC Found at i:11861140 original size:19 final size:19 Alignment explanation
Indices: 11861112--11861175 Score: 92 Period size: 19 Copynumber: 3.3 Consensus size: 19 11861102 AATTTTCGAG * * 11861112 GATATACAATCTTAAATAT 1 GATATGCAATCTTAGATAT 11861131 GATATGCAATCTTAGATAT 1 GATATGCAATCTTAGATAT 11861150 GATATATGCAATCTTAGATAT 1 G--ATATGCAATCTTAGATAT 11861171 GATAT 1 GATAT 11861176 ATACAATCTT Statistics Matches: 41, Mismatches: 2, Indels: 4 0.87 0.04 0.09 Matches are distributed among these distances: 19 22 0.54 21 19 0.46 ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38 Consensus pattern (19 bp): GATATGCAATCTTAGATAT Found at i:11861194 original size:19 final size:21 Alignment explanation
Indices: 11861113--11861188 Score: 111 Period size: 21 Copynumber: 3.7 Consensus size: 21 11861103 ATTTTCGAGG * 11861113 ATATACAATCTTAAATATG-- 1 ATATACAATCTTAGATATGAT * 11861132 ATATGCAATCTTAGATATGAT 1 ATATACAATCTTAGATATGAT * 11861153 ATATGCAATCTTAGATATGAT 1 ATATACAATCTTAGATATGAT 11861174 ATATACAATCTTAGA 1 ATATACAATCTTAGA 11861189 AGATATGATT Statistics Matches: 52, Mismatches: 3, Indels: 2 0.91 0.05 0.04 Matches are distributed among these distances: 19 17 0.33 21 35 0.67 ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37 Consensus pattern (21 bp): ATATACAATCTTAGATATGAT Found at i:11863309 original size:27 final size:27 Alignment explanation
Indices: 11863242--11863447 Score: 252 Period size: 27 Copynumber: 7.6 Consensus size: 27 11863232 TAAATTGTAC 11863242 AGCACTAAGTGTGCGATTTGACTATTGT 1 AGCACTAAGTGTGCGATTTGACTA-TGT 11863270 AGCACTAAGTGTGCGATTTGACTATGT 1 AGCACTAAGTGTGCGATTTGACTATGT * ** * 11863297 TGCACTAAGTGTGCGAAATGAATATG- 1 AGCACTAAGTGTGCGATTTGACTATGT * * * 11863323 ATGCACTAAGTGTGCGAATTGACCATGC 1 A-GCACTAAGTGTGCGATTTGACTATGT * 11863351 GGCACTAAGTGTGCGAGTTTGACTATGT 1 AGCACTAAGTGTGCGA-TTTGACTATGT * * 11863379 AGCACTAAGTGTGCGATTTGATTACGT 1 AGCACTAAGTGTGCGATTTGACTATGT * * * 11863406 AGCACTAAGTGTGCGAGTTGATTATAT 1 AGCACTAAGTGTGCGATTTGACTATGT * 11863433 AGCACTGAGTGTGCG 1 AGCACTAAGTGTGCG 11863448 GACTCAATAT Statistics Matches: 156, Mismatches: 19, Indels: 7 0.86 0.10 0.04 Matches are distributed among these distances: 27 109 0.70 28 47 0.30 ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31 Consensus pattern (27 bp): AGCACTAAGTGTGCGATTTGACTATGT Found at i:11863438 original size:82 final size:80 Alignment explanation
Indices: 11863242--11863447 Score: 259 Period size: 82 Copynumber: 2.5 Consensus size: 80 11863232 TAAATTGTAC * * 11863242 AGCACTAAGTGTGCGATTTGACTATTGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGT 1 AGCACTAAGTGTGCGAATTGACTA-TGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGT * 11863307 GTGCGAAATGAATATG 65 GTGCGAAATGAATACG * ** 11863323 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG 1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAG ** * 11863388 TGTGCGATTTGATTACG 64 TGTGCGAAATGAATACG * * * * 11863405 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG 1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG 11863448 GACTCAATAT Statistics Matches: 106, Mismatches: 16, Indels: 5 0.83 0.13 0.04 Matches are distributed among these distances: 81 18 0.17 82 87 0.82 83 1 0.01 ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31 Consensus pattern (80 bp): AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTG TGCGAAATGAATACG Found at i:11863438 original size:109 final size:109 Alignment explanation
Indices: 11863243--11863447 Score: 315 Period size: 109 Copynumber: 1.9 Consensus size: 109 11863233 AAATTGTACA * * 11863243 GCACTAAGTGTGCGATTTGACTATTGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTG 1 GCACTAAGTGTGCGATTTGACTATTGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG 11863308 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG 66 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG * 11863352 GCACTAAGTGTGCGAGTTTGACTA-TGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT 1 GCACTAAGTGTGCGA-TTTGACTATTGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGT ** * * 11863416 GTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG 65 GTGCGAAATGAATATGAT-GCACTAAGTGTGCG 11863448 GACTCAATAT Statistics Matches: 87, Mismatches: 7, Indels: 4 0.89 0.07 0.04 Matches are distributed among these distances: 108 2 0.02 109 77 0.89 110 8 0.09 ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31 Consensus pattern (109 bp): GCACTAAGTGTGCGATTTGACTATTGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG Found at i:11871307 original size:27 final size:27 Alignment explanation
Indices: 11871269--11871473 Score: 243 Period size: 27 Copynumber: 7.6 Consensus size: 27 11871259 TAAATTGTAC 11871269 AGCACTAAGTGTGCGATTTGACTATGT 1 AGCACTAAGTGTGCGATTTGACTATGT * 11871296 AGCACAAAGTGTGCGATTTGACTATGT 1 AGCACTAAGTGTGCGATTTGACTATGT * ** * 11871323 TGCACTAAGTGTGCGAAATGAATATG- 1 AGCACTAAGTGTGCGATTTGACTATGT * * * 11871349 ATGCACTAAGTGTGCGAATTGACCATGC 1 A-GCACTAAGTGTGCGATTTGACTATGT * 11871377 GGCACTAAGTGTGCGAGTTTGACTATGT 1 AGCACTAAGTGTGCGA-TTTGACTATGT * * 11871405 AGCACTAAGTGTGCGATTTGATTACGT 1 AGCACTAAGTGTGCGATTTGACTATGT * * 11871432 AGCACTAAGTGTGCGAGTTGA-TGATAT 1 AGCACTAAGTGTGCGATTTGACT-ATGT * 11871459 AGCACTGAGTGTGCG 1 AGCACTAAGTGTGCG 11871474 GACTCAATAT Statistics Matches: 153, Mismatches: 21, Indels: 8 0.84 0.12 0.04 Matches are distributed among these distances: 26 1 0.01 27 129 0.84 28 23 0.15 ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29 Consensus pattern (27 bp): AGCACTAAGTGTGCGATTTGACTATGT Found at i:11872911 original size:12 final size:13 Alignment explanation
Indices: 11872894--11872929 Score: 51 Period size: 12 Copynumber: 3.0 Consensus size: 13 11872884 TTTTATTCTA 11872894 TTTTATTAATT-T 1 TTTTATTAATTAT 11872906 TTTTATT-ATTAT 1 TTTTATTAATTAT 11872918 TTTTATT-ATTAT 1 TTTTATTAATTAT 11872930 ATTATATATT Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 11 3 0.13 12 20 0.87 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (13 bp): TTTTATTAATTAT Found at i:11872914 original size:3 final size:3 Alignment explanation
Indices: 11872908--11872947 Score: 55 Period size: 3 Copynumber: 13.3 Consensus size: 3 11872898 ATTAATTTTT * 11872908 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T 11872948 ACCTACATAT Statistics Matches: 33, Mismatches: 2, Indels: 4 0.85 0.05 0.10 Matches are distributed among these distances: 2 2 0.06 3 28 0.85 4 3 0.09 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68 Consensus pattern (3 bp): TTA Found at i:11872916 original size:15 final size:15 Alignment explanation
Indices: 11872892--11872947 Score: 64 Period size: 15 Copynumber: 3.8 Consensus size: 15 11872882 GTTTTTATTC 11872892 TATT-TTATTAATTTT 1 TATTATTATT-ATTTT 11872907 T-TTATTATTATTTT 1 TATTATTATTATTTT * 11872921 TATTATTA-TATTATA 1 TATTATTATTATT-TT 11872936 TATTATTATTAT 1 TATTATTATTAT 11872948 ACCTACATAT Statistics Matches: 36, Mismatches: 1, Indels: 7 0.82 0.02 0.16 Matches are distributed among these distances: 14 12 0.33 15 21 0.58 16 3 0.08 ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70 Consensus pattern (15 bp): TATTATTATTATTTT Found at i:11873315 original size:51 final size:52 Alignment explanation
Indices: 11873205--11873316 Score: 131 Period size: 51 Copynumber: 2.2 Consensus size: 52 11873195 TTTCACGTTT ** 11873205 TATAT-TATACTTATATATTTCATTTTTTTGTAAATGCATGAATATATTTTA 1 TATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATATTTTA * * * * * 11873256 TATGTATATATTTATAT-TTTCCTTGTTTTCATAAATGCAT-TATGTATTTTA 1 TATATATATACTTATATATTTCATT-TTTTCATAAATGCATGAATATATTTTA 11873307 TATATATATA 1 TATATATATA 11873317 AGTTTTATAA Statistics Matches: 51, Mismatches: 8, Indels: 4 0.81 0.13 0.06 Matches are distributed among these distances: 51 28 0.55 52 23 0.45 ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55 Consensus pattern (52 bp): TATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATATTTTA Found at i:11878211 original size:15 final size:15 Alignment explanation
Indices: 11878191--11878224 Score: 52 Period size: 15 Copynumber: 2.3 Consensus size: 15 11878181 TTTCAAAAAA 11878191 AAAAGAGAAA-GAAAG 1 AAAAGA-AAACGAAAG 11878206 AAAAGAAAACGAAAG 1 AAAAGAAAACGAAAG 11878221 AAAA 1 AAAA 11878225 AGGAAAAGAA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 14 3 0.17 15 15 0.83 ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00 Consensus pattern (15 bp): AAAAGAAAACGAAAG Found at i:11878237 original size:17 final size:16 Alignment explanation
Indices: 11878198--11878245 Score: 55 Period size: 17 Copynumber: 3.0 Consensus size: 16 11878188 AAAAAAAGAG 11878198 AAAGAAAG-AAAA-GA 1 AAAGAAAGAAAAAGGA 11878212 AAACGAAAGAAAAAGGA 1 AAA-GAAAGAAAAAGGA * 11878229 AAAGAAAAGCAAAAGGA 1 AAAG-AAAGAAAAAGGA 11878246 GAGGCCAAGG Statistics Matches: 29, Mismatches: 1, Indels: 5 0.83 0.03 0.14 Matches are distributed among these distances: 14 3 0.10 15 5 0.17 16 5 0.17 17 16 0.55 ACGTcount: A:0.73, C:0.04, G:0.23, T:0.00 Consensus pattern (16 bp): AAAGAAAGAAAAAGGA Found at i:11879539 original size:44 final size:44 Alignment explanation
Indices: 11879491--11879817 Score: 161 Period size: 44 Copynumber: 7.4 Consensus size: 44 11879481 GAGAAGGTTG * * 11879491 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA 1 AAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA * * * * 11879535 AAGATGGCAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTT 1 AAGATGGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTA *** * * * * * * * 11879579 AAGCCACAAT-G-TCTTGTCTCTCTGAGCAGTAGCGGAGAAGGTTG 1 AAG--ATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA * ** 11879623 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG 1 AAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA * * * * * 11879667 AAGACGGCAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTT 1 AAGATGGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTA *** * * * * * 11879711 AAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTTA 1 AAG--ATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA * * * 11879755 AAGATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCA 1 AAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA * * 11879799 AAGATGGCAAATCTTATCT 1 AAGATGGTAGATCTTATCT 11879818 TTCCAAGATA Statistics Matches: 203, Mismatches: 60, Indels: 40 0.67 0.20 0.13 Matches are distributed among these distances: 42 11 0.05 43 14 0.07 44 157 0.77 45 13 0.06 46 8 0.04 ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27 Consensus pattern (44 bp): AAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTA Found at i:11879838 original size:44 final size:44 Alignment explanation
Indices: 11879790--11879928 Score: 131 Period size: 44 Copynumber: 3.2 Consensus size: 44 11879780 GTAGTAGTGG * 11879790 AGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGA 1 AGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGATAGTGGGA ** * * * * ** 11879834 AGCAGATTTAAG-TCACAAAGCCTTGTCTCTCTGAGCAGTAGT-GG- 1 AGCAGATCAAAGATCGCAAA-TCTTATCTTTCCAAG-A-TAGTGGGA * * 11879878 AGTAGATCAAAGATTGCAAATCTTATCTTTCCAAGATAGTGGGA 1 AGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGATAGTGGGA 11879922 AGCAGAT 1 AGCAGAT 11879929 TTAAGCCACA Statistics Matches: 69, Mismatches: 20, Indels: 12 0.68 0.20 0.12 Matches are distributed among these distances: 42 4 0.06 43 8 0.12 44 45 0.65 45 8 0.12 46 4 0.06 ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27 Consensus pattern (44 bp): AGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGATAGTGGGA Found at i:11879875 original size:88 final size:88 Alignment explanation
Indices: 11879782--11879959 Score: 329 Period size: 88 Copynumber: 2.0 Consensus size: 88 11879772 CTCCCTAAGT * 11879782 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGT 1 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC 11879847 CACAAAGCCTTGTCTCTCTGAGC 66 CACAAAGCCTTGTCTCTCTGAGC * * 11879870 AGTAGTGGAGTAGATCAAAGATTGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC 1 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC 11879935 CACAAAGCCTTGTCTCTCTGAGC 66 CACAAAGCCTTGTCTCTCTGAGC 11879958 AG 1 AG 11879960 CAGCGAAGAA Statistics Matches: 87, Mismatches: 3, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 88 87 1.00 ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26 Consensus pattern (88 bp): AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC CACAAAGCCTTGTCTCTCTGAGC Found at i:11879877 original size:132 final size:132 Alignment explanation
Indices: 11879455--11879905 Score: 697 Period size: 132 Copynumber: 3.4 Consensus size: 132 11879445 GTGAAACACC * * 11879455 AAGCCTTGTCTC-CTTGAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA 1 AAGCCTTGTCTCTC-TGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCA 11879519 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC 65 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC 11879584 ACA 130 ACA * * * * 11879587 ATGTCTTGTCTCTCTGAGCAGTAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG 1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAG * * 11879652 TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA 66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA * 11879717 CC 131 CA * * * * 11879719 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTTAAAGATTGTAGATCTTATCTCCCTAAGTAG 1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAG * 11879784 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCA 66 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA 11879849 CA 131 CA * * * * * * * 11879851 AAGCCTTGTCTCTCTGAGCAGTAGTGGAGTAGATCAAAGATTGCAAATCTTATCT 1 AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCT 11879906 TTCCAAGATA Statistics Matches: 292, Mismatches: 26, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 132 291 1.00 133 1 0.00 ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27 Consensus pattern (132 bp): AAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAG TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA CA Found at i:11879911 original size:220 final size:220 Alignment explanation
Indices: 11879635--11880102 Score: 695 Period size: 220 Copynumber: 2.1 Consensus size: 220 11879625 GATTGTAGAT * * * * 11879635 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGG 1 CTTATCTCACTGAGCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGG * * * * 11879700 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGGTTAAAGATTGTAG 66 GAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAGCAGCGAAGAAGGTTAAAGATTGTAG * * ** * 11879765 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGAT-GGCAAATCTTATCTTTCCAAGATAG 131 ATCTTATCTCCCTAAGCAGGAGTAAAGCAGATCAAAG-TCGGCAAATCTTATCCTTCCAAGATAG * * 11879829 TGGGAAGCAGATTTAAGTCACAAAGC 195 TAGGAAGCAGATTTAAGCCACAAAGC * * ** 11879855 CTTGTCTCTCTGAGCAGTAGTGGAGTAGATCAAAGATTGCAAATCTTATCTTTCCAAGATAGTGG 1 CTTATCTCACTGAGCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGG * * 11879920 GAAGCAGATTTAAGCCACAAAGCCTTGTCTCTCTGAGCAGCAGCGAAGAAGGTTGAAGATTGTAG 66 GAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAGCAGCGAAGAAGGTTAAAGATTGTAG * 11879985 ATCTTATTTCCCTAAGCAGGAGTAAAGCAGATCAAAGTCGGCAAATCTTATCCTTCCAAGATAGT 131 ATCTTATCTCCCTAAGCAGGAGTAAAGCAGATCAAAGTCGGCAAATCTTATCCTTCCAAGATAGT * 11880050 AGGAAGCAGATTTAAGCCACCAAGC 196 AGGAAGCAGATTTAAGCCACAAAGC * * 11880075 CTTATCTCACTGAGCAGCAGCGGAGTAG 1 CTTATCTCACTGAGCAGTAGTGGAGTAG 11880103 GTCGAAGTTG Statistics Matches: 221, Mismatches: 26, Indels: 2 0.89 0.10 0.01 Matches are distributed among these distances: 219 1 0.00 220 220 1.00 ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25 Consensus pattern (220 bp): CTTATCTCACTGAGCAGTAGTGGAGTAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGG GAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAGCAGCGAAGAAGGTTAAAGATTGTAG ATCTTATCTCCCTAAGCAGGAGTAAAGCAGATCAAAGTCGGCAAATCTTATCCTTCCAAGATAGT AGGAAGCAGATTTAAGCCACAAAGC Found at i:11879919 original size:42 final size:42 Alignment explanation
Indices: 11879520--11879928 Score: 123 Period size: 44 Copynumber: 9.3 Consensus size: 42 11879510 CCCTAAGCAG * 11879520 TAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGA 1 TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGA ** * * * * * ** 11879562 TAGTGGGAAGCAGATTTAAG-CCACAATGTCTTGTCTCTCTGAGCA 1 TAGT-GG-AGCAGATCAAAGATCGCAA-ATCTTATCTTTCCAAG-A * * * ** * * * * 11879607 GTAGCGGAGAAGGTTGAAGATTGTAGATCTTATC-TCCCTAAGCA 1 -TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCC-AAG-A * 11879651 GTAGTGGAGCAGATCGAAGA-CGGCAAATCTTATCTTTCCAAGA 1 -TAGTGGAGCAGATCAAAGATC-GCAAATCTTATCTTTCCAAGA ** ** * * * 11879694 TAGTGGGAAGCAGATTTAAGCCA-C-CAAGCCTTGTC-TCCCTGAGCA 1 TAGT-GG-AGCAGATCAAAG--ATCGCAAATCTTATCTTTCC-AAG-A * * * * * * * 11879739 GCAGTGGAGCAGGTTAAAGATTGTAGATCTTATC-TCCCTAAGTA 1 -TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCC-AAG-A * 11879783 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGA 1 -TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGA ** * * * * ** 11879826 TAGTGGGAAGCAGATTTAAG-TCACAAAGCCTTGTCTCTCTGAGCA 1 TAGT-GG-AGCAGATCAAAGATCGCAAA-TCTTATCTTTCCAAG-A * * 11879871 GTAGTGGAGTAGATCAAAGATTGCAAATCTTATCTTTCCAAGA 1 -TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGA 11879914 TAGTGGGAAGCAGAT 1 TAGT-GG-AGCAGAT 11879929 TTAAGCCACA Statistics Matches: 262, Mismatches: 78, Indels: 52 0.67 0.20 0.13 Matches are distributed among these distances: 42 17 0.06 43 23 0.09 44 189 0.72 45 21 0.08 46 12 0.05 ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26 Consensus pattern (42 bp): TAGTGGAGCAGATCAAAGATCGCAAATCTTATCTTTCCAAGA Done.