Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 45 of 196
Found at i:12354187 original size:43 final size:44
Alignment explanation
Indices: 12354109--12354291 Score: 205
Period size: 43 Copynumber: 4.2 Consensus size: 44
12354099 GCGTCGGTAA
** * *
12354109 CTTTAGCGGCGCTT-TTTATAATAAACGCCGCTATAGACCATGGT
1 CTTTAGCGGCGCTTATCCAT-ACAAACGCCGCTATAGACCATGAT
12354153 CTTTAGCGGCGCTTATCCATA-AAACGCCGCTATAGACCATGAT
1 CTTTAGCGGCGCTTATCCATACAAACGCCGCTATAGACCATGAT
* * *
12354196 CTTTCGCGGCGCTTACCCAT-CAAACGCCGCTATAGACCTTGAT
1 CTTTAGCGGCGCTTATCCATACAAACGCCGCTATAGACCATGAT
* * * *
12354239 CTTTAGCGGCGCTTA-ACAAACAAACGTCGCTATAG-CTCATGGT
1 CTTTAGCGGCGCTTATCCATACAAACGCCGCTATAGAC-CATGAT
*
12354282 TTTTAGCGGC
1 CTTTAGCGGC
12354292 ACTTTTAGAA
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
42 3 0.02
43 101 0.83
44 15 0.12
45 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTTAGCGGCGCTTATCCATACAAACGCCGCTATAGACCATGAT
Found at i:12354681 original size:21 final size:21
Alignment explanation
Indices: 12354615--12354684 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 21
12354605 TTTAAGCTGT
*
12354615 TCTGCTTCCCTCGCTGCAGCA
1 TCTGCTTCTCTCGCTGCAGCA
* *
12354636 TCTACTTCTCTCGCTGCAGCC
1 TCTGCTTCTCTCGCTGCAGCA
12354657 TCTGCTTCTCTCGCTGTC-GCA
1 TCTGCTTCTCTCGCTG-CAGCA
12354678 TCTGCTT
1 TCTGCTT
12354685 TAAGTTACTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 42 0.98
22 1 0.02
ACGTcount: A:0.07, C:0.40, G:0.17, T:0.36
Consensus pattern (21 bp):
TCTGCTTCTCTCGCTGCAGCA
Found at i:12354768 original size:21 final size:21
Alignment explanation
Indices: 12354726--12354771 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
12354716 TTGAACCTCA
* *
12354726 GCTTCTCTCGCTGTTGCCTCT
1 GCTTCTCTCGCTGCTGCATCT
12354747 GCTTCTCTCGCTGCTGCATCT
1 GCTTCTCTCGCTGCTGCATCT
12354768 GCTT
1 GCTT
12354772 TAAGTTGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.37, G:0.20, T:0.41
Consensus pattern (21 bp):
GCTTCTCTCGCTGCTGCATCT
Found at i:12354786 original size:87 final size:87
Alignment explanation
Indices: 12354640--12354832 Score: 284
Period size: 87 Copynumber: 2.2 Consensus size: 87
12354630 GCAGCATCTA
** *
12354640 CTTCTCTCGCTGCAGCCTCTGCTTCTCTCGCTGTCGCATCTGCTTTAAGTTACTGCTGGAGTTGT
1 CTTCTCTCGCTGTTGCCTCTGCTTCTCTCGCTGTCGCATCTGCTTTAAGTTACTGCTGGAGTTCT
12354705 TCATA-CTTTCGTTGAACCTCAG
66 TCATATCTTT-GTTGAACCTCAG
*
12354727 CTTCTCTCGCTGTTGCCTCTGCTTCTCTCGCTG-CTGCATCTGCTTTAAGTT-GTAGCTGGAGTT
1 CTTCTCTCGCTGTTGCCTCTGCTTCTCTCGCTGTC-GCATCTGCTTTAAGTTACT-GCTGGAGTT
*
12354790 CTTCATATCTTTTTTGAACCTCAG
64 CTTCATATCTTTGTTGAACCTCAG
*
12354814 CTTCTCTCGATGTTGCCTC
1 CTTCTCTCGCTGTTGCCTC
12354833 CGATTTAAGT
Statistics
Matches: 97, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
86 2 0.02
87 91 0.94
88 4 0.04
ACGTcount: A:0.11, C:0.30, G:0.19, T:0.40
Consensus pattern (87 bp):
CTTCTCTCGCTGTTGCCTCTGCTTCTCTCGCTGTCGCATCTGCTTTAAGTTACTGCTGGAGTTCT
TCATATCTTTGTTGAACCTCAG
Found at i:12357252 original size:16 final size:16
Alignment explanation
Indices: 12357231--12357261 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12357221 GTAAATGGAG
12357231 TTAGGGATTTCAGAAC
1 TTAGGGATTTCAGAAC
*
12357247 TTAGGGATTTTAGAA
1 TTAGGGATTTCAGAA
12357262 GAGGAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (16 bp):
TTAGGGATTTCAGAAC
Found at i:12358837 original size:23 final size:23
Alignment explanation
Indices: 12358794--12358838 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
12358784 TGCTTTTGTA
*
12358794 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
12358817 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
12358839 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:12359224 original size:797 final size:799
Alignment explanation
Indices: 12357535--12359481 Score: 2963
Period size: 797 Copynumber: 2.4 Consensus size: 799
12357525 TTAAAATTTA
* *
12357535 TAAATATTAATCCCAATACCCTAAAATACAAAACTTTCATTTGCGGCGTTTTTACAAAAAAACGC
1 TAAATATTAATCCCAATACCCTAAAATACATAACTTTCATTTGCGGCATTTTTA-AAAAAAACGC
*
12357600 C-CTTAATACCAATAAACAGTATAAAAATGAAAACGTTTCGGTTACACGTTTTGCGGCGTTTTTG
65 CGC-TAATACCAATAAACAGTATAAAAA--AGAACG-TTCGG----A---TTTGCGGCG---TT-
12357664 CAATAAACGCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAAT
115 ---T--A----ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAAT
*
12357729 TTATTTTATTTGTCTTTATTTATAAGTTTAATGATTTTTAATAGA--TTTT-TTTTGATAATTGT
171 TTATTTTATTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGT
*
12357791 TATGACATTATTTTAAATTGATACATTAATATGCATTTATAAAATTATTTCAATTTTATGCAGTA
236 TATGACATTATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTA
*
12357856 TATATAATATATAACATATATGCATAGATATATATCGTGGCATATATTATATATATATAACCCTG
301 TGTATAATATATAACATATATGCATAGATATATATCGTGGCATATATTATATATATATAACCCTG
12357921 TCACTTATAATCCTATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAATTTTT
366 TCACTTATAATCCTATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAATTTTT
12357986 TTTTGCTTTTGTACCCTAAAACCCGAAGCTATTAATCCCTTATAACCCGTAAACATAAAAATTAA
431 TTTTGCTTTTGTACCCTAAAACCCGAAGCTATTAATCCCTTATAACCCGTAAACATAAAAATTAA
* * *
12358051 AGGTTAAACCCTAGCTAACTCGTATTCTTCATACAAATCCGAACGCAAAAACCAAACATTGTAAC
496 AGGCTAAACCCTAGCTAACTCATATTCTTCATACAAATCCGAACACAAAAACCAAACATTGTAAC
* *
12358116 ATTCAAATCAATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCA
561 ATTCAAATCAATAAGGGTAAACCATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCA
12358181 TTACATCTTATAAGCTGTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCAT
626 TTACATCTTATAAGCTGTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCAT
* * * *
12358246 TCCTCAAGCCGTAAACTTAAACCCAAAATCTTAAACATAAAATTATAATCCTAAATTAATAAACA
691 TCCTCAAGCCATAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACA
* *
12358311 TTATGTATCGAACCCTAAAACCCCAAACCGTATGCAACAAAACT
756 TTATGCATCGAACCCTAAAACCCCAAACCGTATACAACAAAACT
* * *
12358355 TAAATATTAATCCTAATACCCTAAAATACATAAGTTTCATTTGCGGCGTTTTTAAAAAAAACGCC
1 TAAATATTAATCCCAATACCCTAAAATACATAACTTTCATTTGCGGCATTTTTAAAAAAAACGCC
12358420 GCTAATACCAATAAACAGTATAAAAAAGAA-G-TC-G-TTT-C-G-G-TT-ACAAATCTTGTTCT
66 GCTAATACCAATAAACAGTATAAAAAAGAACGTTCGGATTTGCGGCGTTTAACAAATCTTGTTCT
*
12358476 ATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTTGTCTTTATTTATAA
131 ATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAATTTATTTTATTTGTCTTTATTTATAA
*
12358541 GTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTATTTTAAATTGATACA
196 GTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTATTTTAAATTGATACA
12358606 TTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAATATATAACATATATGCAT
261 TTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAATATATAACATATATGCAT
*
12358671 AGATATATATCGTGGCATATTATATACATATATATATAACCCTGTCTCTTATAATCCTATATACT
326 AGATATATATCGTGGCATA-TAT-T--ATATATATATAACCCTGTCACTTATAATCCTATATACT
12358736 AGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAATTTTTTTTTTGCTTTTGTACCCTAAA
387 AGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAA-TTTTTTTTTGCTTTTGTACCCTAAA
*
12358801 ACCCGAAGCTATTAATCCC-TATAACCCGTAAACATTAAAATTAAAGGCTAAACCCTAGCTAACT
451 ACCCGAAGCTATTAATCCCTTATAACCCGTAAACATAAAAATTAAAGGCTAAACCCTAGCTAACT
* *
12358865 CATATTCTTCATGCAAATCCGAACACAAAAACCAAGCATTGTAACATTCAAATCAATAAGGGTAA
516 CATATTCTTCATACAAATCCGAACACAAAAACCAAACATTGTAACATTCAAATCAATAAGGGTAA
* *
12358930 ACCATAAACCATAAACATCAAGCTGTAAAACAATAAATTTGATCATTAATATATCTTATAAG-TC
581 ACCATAAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCA-T--TACATCTTATAAGCT-
12358994 GTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCATAAAC
642 GTAAACCTCGCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCATAAAC
* *
12359059 CTAAACCCAAAACCCTAAACATAAAATTGTAATCCTAAATTAATAAACATTATGCATTGAACCCT
707 CTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGCATCGAACCCT
12359124 AAAACCCCAAACCGTATACAACAAAACT
772 AAAACCCCAAACCGTATACAACAAAACT
*
12359152 TAAATATTAATCCCCAA-ACCCTAAAATACATAACTTTCATTTGCGGCATTTTTACAAAAAACGC
1 TAAATATTAAT-CCCAATACCCTAAAATACATAACTTTCATTTGCGGCATTTTTAAAAAAAACGC
*
12359216 CGCTAATACCAATAAACAGTATAAAAATGAAGTCGTTTCGGTTACACATTTTGCGGCGTTTTTGC
65 CGCTAATACCAATAAACAGTATAAAAAAGAA--CG-TTCGG------A-TTTGCGGCG--TTT--
* *
12359281 AAAAACGCCACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGTTAATTTTTTAATTT
116 ----A----ACAAATCTTGTTCTATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAATTT
12359346 ATTTTATTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTA
173 ATTTTATTTGTCTTTATTTATAAGTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTA
12359411 TGACATTATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATG
238 TGACATTATTTTAAATTGATACATTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATG
12359476 TATAAT
303 TATAAT
12359482 TTAAATATAA
Statistics
Matches: 1045, Mismatches: 37, Indels: 82
0.90 0.03 0.07
Matches are distributed among these distances:
787 96 0.09
789 4 0.00
790 120 0.11
791 3 0.00
792 1 0.00
794 223 0.21
795 45 0.04
796 1 0.00
797 247 0.24
798 5 0.00
800 1 0.00
802 3 0.00
803 2 0.00
804 1 0.00
805 3 0.00
811 3 0.00
812 1 0.00
813 2 0.00
814 3 0.00
816 1 0.00
817 5 0.00
819 35 0.03
820 52 0.05
828 188 0.18
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (799 bp):
TAAATATTAATCCCAATACCCTAAAATACATAACTTTCATTTGCGGCATTTTTAAAAAAAACGCC
GCTAATACCAATAAACAGTATAAAAAAGAACGTTCGGATTTGCGGCGTTTAACAAATCTTGTTCT
ATAGCGGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAATTTATTTTATTTGTCTTTATTTATAA
GTTTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTATTTTAAATTGATACA
TTAATATGAATTTATAAAATTATTTCAATTTTATGCAGTATGTATAATATATAACATATATGCAT
AGATATATATCGTGGCATATATTATATATATATAACCCTGTCACTTATAATCCTATATACTAGTG
ACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAATTTTTTTTTGCTTTTGTACCCTAAAACCCG
AAGCTATTAATCCCTTATAACCCGTAAACATAAAAATTAAAGGCTAAACCCTAGCTAACTCATAT
TCTTCATACAAATCCGAACACAAAAACCAAACATTGTAACATTCAAATCAATAAGGGTAAACCAT
AAACCATAAACATCAAGCCGTAAAACAATAAATTTGATCATTACATCTTATAAGCTGTAAACCTC
GCATTAAAACTAACATGTAAACTCAAACCCTAAACCCCATTCCTCAAGCCATAAACCTAAACCCA
AAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGCATCGAACCCTAAAACCCCA
AACCGTATACAACAAAACT
Found at i:12360179 original size:40 final size:42
Alignment explanation
Indices: 12360123--12360220 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 42
12360113 TAATAATTGG
* **
12360123 TTTTAGCGGCGTTTTTTTATGTAACGCCGCTAATGCTCGATA
1 TTTTAGCGGCGTTTTTTCATAAAACGCCGCTAATGCTCGATA
* *
12360165 TTTTA-CGGCG-TTTTTCGTAAAATGCCGCTAATGCTCGAT-
1 TTTTAGCGGCGTTTTTTCATAAAACGCCGCTAATGCTCGATA
* * *
12360204 TGTTAGTGGTGTTTTTT
1 TTTTAGCGGCGTTTTTT
12360221 GTCCAAACGC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
39 4 0.09
40 27 0.59
41 10 0.22
42 5 0.11
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.44
Consensus pattern (42 bp):
TTTTAGCGGCGTTTTTTCATAAAACGCCGCTAATGCTCGATA
Found at i:12366157 original size:17 final size:17
Alignment explanation
Indices: 12366135--12366179 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
12366125 AAAAAGTATT
12366135 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
12366152 TTAAAAA-AATTTAAAA
1 TTAAAAATATTTTAAAA
* *
12366168 ATAAATATATTT
1 TTAAAAATATTT
12366180 ATTATATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:12366168 original size:41 final size:41
Alignment explanation
Indices: 12366049--12366168 Score: 152
Period size: 41 Copynumber: 2.9 Consensus size: 41
12366039 ACCAAAAATT
**** **
12366049 TATTTTAAAAATATTTTAAAATTAAATTTTTTTTTAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAATTTAAAAAAAG
* *
12366090 TATTTT-AAAATATTTTAAAATTAAAAAATAATAAAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAA-ATTTAAAAAAAG
12366131 TATTTTAAAAATATTTTAAAATTAAAAAAATTTAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAATTTAAAAA
12366169 TAAATATATT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
40 19 0.28
41 26 0.39
42 22 0.33
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (41 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAATTTAAAAAAAG
Found at i:12366602 original size:17 final size:17
Alignment explanation
Indices: 12366580--12366615 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
12366570 ACAGATGTTT
*
12366580 ATATAATTTTTTAATAA
1 ATATAAATTTTTAATAA
*
12366597 ATATAAATTTTTCATAA
1 ATATAAATTTTTAATAA
12366614 AT
1 AT
12366616 TTTCAAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATAAATTTTTAATAA
Found at i:12367135 original size:20 final size:19
Alignment explanation
Indices: 12367099--12367138 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
12367089 GAATTTTAAA
* *
12367099 ATATTTTTTTATAAATTTT
1 ATATTTTTTCAAAAATTTT
12367118 ATATTTTTTCAAATAATTTT
1 ATATTTTTTCAAA-AATTTT
12367138 A
1 A
12367139 ATAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
ATATTTTTTCAAAAATTTT
Found at i:12367137 original size:29 final size:29
Alignment explanation
Indices: 12367105--12367184 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
12367095 TAAAATATTT
**
12367105 TTTTATAAATTTTATATTTTTTCAAAT-AA
1 TTTTATAAATTTTA-ATTTTTAAAAATAAA
12367134 TTTTA-ATAATTTTAATTTTTAAAAATAAA
1 TTTTATA-AATTTTAATTTTTAAAAATAAA
*
12367163 TTTTATAATTTTTTGAATTTTT
1 TTTTATAA-ATTTT-AATTTTT
12367185 GAAATTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
28 11 0.26
29 20 0.47
30 5 0.12
31 7 0.16
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (29 bp):
TTTTATAAATTTTAATTTTTAAAAATAAA
Found at i:12367160 original size:28 final size:29
Alignment explanation
Indices: 12367105--12367174 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
12367095 TAAAATATTT
**
12367105 TTTTATAAATTTTATATTTTTTCAAAT-AA
1 TTTTAT-AATTTTATATTTTTAAAAATAAA
12367134 TTTTAATAATTTTA-ATTTTTAAAAATAAA
1 TTTT-ATAATTTTATATTTTTAAAAATAAA
12367163 TTTTATAATTTT
1 TTTTATAATTTT
12367175 TTGAATTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
28 18 0.49
29 17 0.46
30 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTATAATTTTATATTTTTAAAAATAAA
Found at i:12374294 original size:168 final size:166
Alignment explanation
Indices: 12374010--12374509 Score: 687
Period size: 168 Copynumber: 3.0 Consensus size: 166
12374000 ATCAGAGATT
* * *
12374010 GAATATCCATGCAAGAGCCATATTGAAGATCAGAAGAGTGATGATCAAATGTGTCTAAAACCTGT
1 GAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTGATGATC-AGTGTGTCTAAAACCCGT
* * * *
12374075 CAAGGAAGAACCTAAAGATGATGTTTGTGATAAACCCTTGCATGGGACTCCTTCATGCAAGGAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGATAAA-CCTTGTATGAGACTCCTCCATGCAAGGAAA
* * * *
12374140 CTAAGAGGAAGAAATCACGATCACTATGTTCTAACACA
129 CTAGGAGGAAGAAATCACAATCACAATGTTCTAAAACA
* * *
12374178 GAATATCTATGCAAGAGCTATATTGAAGATCATAAGAGTGATGATCAGTTGTGTCTAAAACCCGT
1 GAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTGATGATCAG-TGTGTCTAAAACCCGT
* *
12374243 CAAGGAAGAAGCTAAAGATGGTGTTTATGATGAAACCTTGTATGAGACTCCTCCATGCAA-GAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGAT-AAACCTTGTATGAGACTCCTCCATGCAAGGAAA
** **
12374307 GCTAGGAGGACTAAATCACAATCACAATGTTCTAAAATT
129 -CTAGGAGGAAGAAATCACAATCACAATGTTCTAAAACA
* *
12374346 GAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTGAAGATCAAGTGAGTCTAAAACCCGT
1 GAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTGATGATC-AGTGTGTCTAAAACCCGT
* *
12374411 CAAAGAAGAAGCTAAAGATGATGTTTGTCATAAAACCTTGTATGAGACTCCTCCATGCAAGGAAA
65 CAAGGAAGAAGCTAAAGATGATGTTTGTGAT-AAACCTTGTATGAGACTCCTCCATGCAAGGAAA
* * *
12374476 CTAGGAAGAAGAAACCGCAATCACAATGTTCTAA
129 CTAGGAGGAAGAAATCACAATCACAATGTTCTAA
12374510 GCCTCGAAAG
Statistics
Matches: 293, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
167 5 0.02
168 279 0.95
169 9 0.03
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (166 bp):
GAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTGATGATCAGTGTGTCTAAAACCCGTC
AAGGAAGAAGCTAAAGATGATGTTTGTGATAAACCTTGTATGAGACTCCTCCATGCAAGGAAACT
AGGAGGAAGAAATCACAATCACAATGTTCTAAAACA
Found at i:12377695 original size:16 final size:18
Alignment explanation
Indices: 12377676--12377715 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
12377666 TATTATTTTT
*
12377676 TTAAAAATA-T-AATACA
1 TTAAAAATACTAAAAACA
12377692 TTAAAAATACTAAAAACA
1 TTAAAAATACTAAAAACA
12377710 TTAAAA
1 TTAAAA
12377716 TAAATGTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
17 1 0.05
18 11 0.52
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (18 bp):
TTAAAAATACTAAAAACA
Found at i:12379295 original size:22 final size:22
Alignment explanation
Indices: 12379255--12379313 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
12379245 TCATAATAGT
* *
12379255 TCAGATA-AGGTGCAAAACAAA
1 TCAGATATAGATGCAGAACAAA
*
12379276 TCAGATATAGATGCAGAACATA
1 TCAGATATAGATGCAGAACAAA
*
12379298 TTAGA-ATCAGATGCAG
1 TCAGATAT-AGATGCAG
12379314 TTTCTTACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 9 0.28
22 23 0.72
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (22 bp):
TCAGATATAGATGCAGAACAAA
Found at i:12383391 original size:18 final size:18
Alignment explanation
Indices: 12383347--12383397 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
12383337 ATTCACCTAA
12383347 ACCCAACCCAAACCCAAGT
1 ACCCAACCC-AACCCAAGT
*** *
12383366 ATTTAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
12383384 ACCCAACCCAACCC
1 ACCCAACCCAACCC
12383398 TCACAAAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.39, C:0.47, G:0.02, T:0.12
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:12383509 original size:9 final size:9
Alignment explanation
Indices: 12383495--12383588 Score: 120
Period size: 9 Copynumber: 10.4 Consensus size: 9
12383485 GTAGTGATTC
12383495 AATTCGGTT
1 AATTCGGTT
12383504 AATTCGGTT
1 AATTCGGTT
*
12383513 AATTTGAG-T
1 AATTCG-GTT
*
12383522 AATTCAGTT
1 AATTCGGTT
*
12383531 AATTCGGGT
1 AATTCGGTT
12383540 AA-TCTGGTT
1 AATTC-GGTT
12383549 AATTCGGTT
1 AATTCGGTT
*
12383558 AATTCGGGT
1 AATTCGGTT
12383567 AATTCGGTT
1 AATTCGGTT
12383576 AATTCGGTT
1 AATTCGGTT
12383585 AATT
1 AATT
12383589 TTTAACCAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
8 3 0.04
9 67 0.92
10 3 0.04
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:12383531 original size:27 final size:27
Alignment explanation
Indices: 12383495--12383588 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
12383485 GTAGTGATTC
*
12383495 AATTCGGTTAATTCGGTTAATTTGAG-T
1 AATTCGGTTAATTCGGGTAATTTG-GTT
* *
12383522 AATTCAGTTAATTCGGGTAATCTGGTT
1 AATTCGGTTAATTCGGGTAATTTGGTT
*
12383549 AATTCGGTTAATTCGGGTAATTCGGTT
1 AATTCGGTTAATTCGGGTAATTTGGTT
12383576 AATTCGGTTAATT
1 AATTCGGTTAATT
12383589 TTTAACCAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.02
27 59 0.98
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.43
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATTTGGTT
Found at i:12395048 original size:22 final size:22
Alignment explanation
Indices: 12395020--12395063 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
12395010 GGGTAAGAAA
12395020 TTGCATCTGAT-TCTGATATGTT
1 TTGCATCT-ATATCTGATATGTT
12395042 TTGCATCTATATCTGATATGTT
1 TTGCATCTATATCTGATATGTT
12395064 CTACACCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (22 bp):
TTGCATCTATATCTGATATGTT
Found at i:12395077 original size:21 final size:22
Alignment explanation
Indices: 12395031--12395078 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
12395021 TGCATCTGAT
* * *
12395031 TCTGATATGTTTTGCATCTATA
1 TCTGATATGTTCTACACCTATA
12395053 TCTGATATGTTCTACACCT-TA
1 TCTGATATGTTCTACACCTATA
12395074 TCTGA
1 TCTGA
12395079 ACTGGTACGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (22 bp):
TCTGATATGTTCTACACCTATA
Found at i:12400756 original size:17 final size:17
Alignment explanation
Indices: 12400736--12400803 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
12400726 AAACGCACCA
12400736 TTTCATTTTCTTTTTAT
1 TTTCATTTTCTTTTTAT
*
12400753 TTTCATTTTATTTTTTAT
1 TTTCATTTT-CTTTTTAT
12400771 TTT--TCTTTCTTTTT-T
1 TTTCAT-TTTCTTTTTAT
*
12400786 CCCTTCATTTTCTTTTTA
1 --TTTCATTTTCTTTTTA
12400804 CATCCCCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
15 1 0.02
16 6 0.15
17 14 0.34
18 19 0.46
19 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTCATTTTCTTTTTAT
Found at i:12400906 original size:8 final size:8
Alignment explanation
Indices: 12400893--12400953 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
12400883 ATTCTTTTCG
12400893 TTTTATTT
1 TTTTATTT
12400901 TTTTATTT
1 TTTTATTT
12400909 TTTT-TGTT
1 TTTTAT-TT
*
12400917 TTTTCTTCTT
1 TTTT-AT-TT
12400927 TTTTATTT
1 TTTTATTT
*
12400935 TTCTATTT
1 TTTTATTT
*
12400943 TCTTTCTTT
1 T-TTTATTT
12400952 TT
1 TT
12400954 CTTTCCCCTC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 1 0.02
8 29 0.66
9 7 0.16
10 7 0.16
ACGTcount: A:0.07, C:0.08, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTATTT
Found at i:12400918 original size:16 final size:16
Alignment explanation
Indices: 12400893--12400953 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
12400883 ATTCTTTTCG
12400893 TTTTATTTTTTTATTTT
1 TTTTA-TTTTTTATTTT
* *
12400910 TTTTGTTTTTTCTTCTT
1 TTTTATTTTTTATT-TT
12400927 TTTTATTTTTCTATTTT
1 TTTTATTTTT-TATTTT
* *
12400944 CTTTCTTTTT
1 TTTTATTTTT
12400954 CTTTCCCCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
16 8 0.22
17 25 0.69
18 3 0.08
ACGTcount: A:0.07, C:0.08, G:0.02, T:0.84
Consensus pattern (16 bp):
TTTTATTTTTTATTTT
Found at i:12400958 original size:10 final size:9
Alignment explanation
Indices: 12400898--12400957 Score: 50
Period size: 10 Copynumber: 6.2 Consensus size: 9
12400888 TTTCGTTTTA
*
12400898 TTTTTTTAT
1 TTTTTTTCT
*
12400907 TTTTTTTGT
1 TTTTTTTCT
12400916 TTTTTCTTCT
1 TTTTT-TTCT
12400926 TTTTTATT-T
1 TTTTT-TTCT
12400935 TTCTATTTTCT
1 TT-T-TTTTCT
12400946 TTCTTTTTCT
1 TT-TTTTTCT
12400956 TT
1 TT
12400958 CCCCTCCTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
9 16 0.36
10 21 0.48
11 7 0.16
ACGTcount: A:0.05, C:0.10, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:12401943 original size:23 final size:24
Alignment explanation
Indices: 12401896--12401941 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 24
12401886 TTCATTGTGA
12401896 AAAAAAAATGAATGAAAAAAATTT
1 AAAAAAAATGAATGAAAAAAATTT
12401920 AAAAAAAA-GAA-GAAAAAAATTT
1 AAAAAAAATGAATGAAAAAAATTT
12401942 TAGTCTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.50
23 3 0.14
24 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (24 bp):
AAAAAAAATGAATGAAAAAAATTT
Found at i:12406376 original size:17 final size:18
Alignment explanation
Indices: 12406354--12406389 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
12406344 GGAATAAAAT
*
12406354 AAAAGAATAAA-AGAAAC
1 AAAAGAAGAAATAGAAAC
12406371 AAAAGAAGAAATAGAAAC
1 AAAAGAAGAAATAGAAAC
12406389 A
1 A
12406390 GAATAGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.75, C:0.06, G:0.14, T:0.06
Consensus pattern (18 bp):
AAAAGAAGAAATAGAAAC
Found at i:12407333 original size:21 final size:22
Alignment explanation
Indices: 12407282--12407411 Score: 187
Period size: 21 Copynumber: 6.0 Consensus size: 22
12407272 GCTTTGCCGA
12407282 TCAGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
12407304 CTCAGGCACTTTATGTGTCGTAT
1 -TCAGGCACTTTATGTGTCGTAT
*
12407327 T-AGGCACTTTATGTGTCATAT
1 TCAGGCACTTTATGTGTCGTAT
12407348 CTCAGGCACTTTATGTGTCGT-T
1 -TCAGGCACTTTATGTGTCGTAT
**
12407370 TCAGGCACTTCGTGTGTCGT-T
1 TCAGGCACTTTATGTGTCGTAT
12407391 TCAGGCAC-TTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
12407412 ACTGATCAGG
Statistics
Matches: 98, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
20 9 0.09
21 47 0.48
22 3 0.03
23 39 0.40
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (22 bp):
TCAGGCACTTTATGTGTCGTAT
Found at i:12407334 original size:44 final size:45
Alignment explanation
Indices: 12407282--12407411 Score: 198
Period size: 44 Copynumber: 3.0 Consensus size: 45
12407272 GCTTTGCCGA
12407282 TCAGGCACTTTATGTGTCGTATCTCAGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTATCTCAGGCACTTTATGTGTCGTAT
*
12407327 T-AGGCACTTTATGTGTCATATCTCAGGCACTTTATGTGTCGT-T
1 TCAGGCACTTTATGTGTCGTATCTCAGGCACTTTATGTGTCGTAT
**
12407370 TCAGGCACTTCGTGTGTCGT-T-TCAGGCAC-TTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTATCTCAGGCACTTTATGTGTCGTAT
12407412 ACTGATCAGG
Statistics
Matches: 79, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
41 11 0.14
42 9 0.11
43 3 0.04
44 55 0.70
45 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (45 bp):
TCAGGCACTTTATGTGTCGTATCTCAGGCACTTTATGTGTCGTAT
Found at i:12415888 original size:25 final size:25
Alignment explanation
Indices: 12415860--12415915 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
12415850 ATTCGAGAAT
*
12415860 GCTCATACGAGCACATA-AATGGGAA
1 GCTCATACGAGC-CATATAACGGGAA
* * *
12415885 GCTCTTTCGAGCGATATAACGGGAA
1 GCTCATACGAGCCATATAACGGGAA
12415910 GCTCAT
1 GCTCAT
12415916 TAAAGCCGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (25 bp):
GCTCATACGAGCCATATAACGGGAA
Found at i:12416534 original size:21 final size:21
Alignment explanation
Indices: 12416509--12416551 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12416499 GTAAATTTAG
*
12416509 TTCAATTTAATAAAATTCATA
1 TTCAATTCAATAAAATTCATA
**
12416530 TTCAATTCAATCCAATTCATA
1 TTCAATTCAATAAAATTCATA
12416551 T
1 T
12416552 CTTAGGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (21 bp):
TTCAATTCAATAAAATTCATA
Found at i:12428154 original size:42 final size:42
Alignment explanation
Indices: 12428058--12428251 Score: 216
Period size: 42 Copynumber: 4.6 Consensus size: 42
12428048 CAATTCCATA
* * *
12428058 TCCCAGATATGGTCTTACATGCTATCAT-ATATCGATGCCAATAG
1 TCCCAGACATGGTCTTACACG-AATC-TCATATCGATGCCAAT-G
* *
12428102 --CTAG-CTATGGTCTTACACGATTCTCATATCGATGCCAATG
1 TCCCAGAC-ATGGTCTTACACGAATCTCATATCGATGCCAATG
*
12428142 TCCCAGACATGGTCTTACACGAATCTCATATCAATGCCAATG
1 TCCCAGACATGGTCTTACACGAATCTCATATCGATGCCAATG
* * * *
12428184 TCCCAGACATGGTCTTACATGAATCACATAACGAAGCCAATG
1 TCCCAGACATGGTCTTACACGAATCTCATATCGATGCCAATG
*
12428226 TCCTAGACATGGTCTTACACGTAATC
1 TCCCAGACATGGTCTTACACG-AATC
12428252 ACAATTCAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
40 2 0.02
41 16 0.12
42 106 0.82
43 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAATCTCATATCGATGCCAATG
Found at i:12430533 original size:24 final size:24
Alignment explanation
Indices: 12430492--12430560 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
12430482 GACAAATAAA
* **
12430492 AATAATAATATAGCATAACTTTTA-
1 AATAATAATACATAATAA-TTTTAG
*
12430516 AGTAATAATACATAATAATTTTAG
1 AATAATAATACATAATAATTTTAG
* *
12430540 AATAATAATACACAATGATTT
1 AATAATAATACATAATAATTT
12430561 CGAAAACATG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 5 0.14
24 32 0.86
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (24 bp):
AATAATAATACATAATAATTTTAG
Found at i:12430667 original size:3 final size:3
Alignment explanation
Indices: 12430659--12430688 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
12430649 TACATAAATT
12430659 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
12430689 GTAAAAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12432329 original size:44 final size:45
Alignment explanation
Indices: 12432279--12432782 Score: 230
Period size: 44 Copynumber: 10.8 Consensus size: 45
12432269 CCTTTATTTT
* *
12432279 AATCTGCTCC-ACTGTAATCTTAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
12432323 CATCTGCTCCGA-TGTAACCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* ** * * *
12432367 AATCTGATGCGATCTACTCTACTGTAA-CTTCAGATAGATAAGATCCT-TTA-TTTT
1 AATC---T--G--CT-C-CGACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
12432421 AATCCGCTCC-ACTGTAATATTAGGGAGATAAGATTACTAGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
12432465 CATCTGCTCCGA-TGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
12432509 AATCTGATGTGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCATTTA-TTTT
1 AATC-----TG--CT-C-CGACTGTAATC-TCAGGGAGATAAGATTA-CTAGCTTC
* *
12432563 AATCCGCTCC-ACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
12432607 CATCTGCTCCG-CTGTAATCTCAAGGAGATAAGATTTCTAGCTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
12432651 AATCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATC---T--G--CT-C-CGACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
12432705 AATCCGCTCC-ACTGTAATCTCAGGGAGATAGGATTACTAACTTC
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
12432749 AATCTGCTCCG-CTGTAATCTCAGGAAGACAAGAT
1 AATCTGCTCCGACTGTAATCTCAGGGAGATAAGAT
12432783 CTGTAATTTC
Statistics
Matches: 344, Mismatches: 66, Indels: 100
0.67 0.13 0.20
Matches are distributed among these distances:
42 2 0.01
43 6 0.02
44 214 0.62
45 7 0.02
46 3 0.01
47 8 0.02
49 7 0.02
51 6 0.02
52 3 0.01
53 8 0.02
54 74 0.22
55 4 0.01
56 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
AATCTGCTCCGACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:12432516 original size:142 final size:142
Alignment explanation
Indices: 12432231--12432782 Score: 910
Period size: 142 Copynumber: 3.9 Consensus size: 142
12432221 AGATAAGACT
* * * *
12432231 TGATACGATCTGCTCTACTGTAACTT--TAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
* *
12432294 AATCTTAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAACCTCAGGGAGATAAGATTT
66 AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGATTT
12432359 CTGGCTTCAATC
131 CTGGCTTCAATC
*
12432371 TGATGCGATCTACTCTACTGTAACTTCAGATAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
* * *
12432436 AATATTAGGGAGATAAGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGATTT
66 AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGATTT
12432501 CTGGCTTCAATC
131 CTGGCTTCAATC
* *
12432513 TGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
* *
12432578 AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTT
66 AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGATTT
*
12432643 CTAGCTTCAATC
131 CTGGCTTCAATC
12432655 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
* * * * *
12432720 AATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGAAGACAAGAT
66 AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGAT
12432783 CTGTAATTTC
Statistics
Matches: 386, Mismatches: 24, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
140 24 0.06
142 362 0.94
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
AATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGATGTAATCTCAGGGAGATAAGATTT
CTGGCTTCAATC
Found at i:12439477 original size:3 final size:3
Alignment explanation
Indices: 12439469--12439496 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
12439459 ATAGTACATA
12439469 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12439497 GTAAAAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:12450380 original size:21 final size:21
Alignment explanation
Indices: 12450348--12450388 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
12450338 GAACATTTGG
12450348 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
12450369 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
12450389 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:12458460 original size:24 final size:24
Alignment explanation
Indices: 12458433--12458482 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
12458423 TGTTGTAGGT
* *
12458433 CATGTGCACCACACGGTCGTATGC
1 CATGTGCACCACACAGTCATATGC
12458457 CATGTGCACCACACAGTCATATGC
1 CATGTGCACCACACAGTCATATGC
12458481 CA
1 CA
12458483 AGTCGTGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.34, G:0.20, T:0.20
Consensus pattern (24 bp):
CATGTGCACCACACAGTCATATGC
Found at i:12458668 original size:29 final size:30
Alignment explanation
Indices: 12458622--12458693 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
12458612 CTACACGGGC
* *
12458622 AGACGACACGAGCATGTGTCAGGCCATGT-G
1 AGAC-ACACGGGCATGTGCCAGGCCATGTGG
* *
12458652 AGACACACGGGCGTGTGCCAGGCTATGTGG
1 AGACACACGGGCATGTGCCAGGCCATGTGG
*
12458682 AGCCACACGGGC
1 AGACACACGGGC
12458694 TAGCCATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
29 20 0.56
30 16 0.44
ACGTcount: A:0.24, C:0.26, G:0.36, T:0.14
Consensus pattern (30 bp):
AGACACACGGGCATGTGCCAGGCCATGTGG
Found at i:12459596 original size:18 final size:18
Alignment explanation
Indices: 12459573--12459609 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
12459563 AATCTACTTT
*
12459573 TTATTTTAAAATGAAAAA
1 TTATTTCAAAATGAAAAA
12459591 TTATTTCAAAATGAAAAA
1 TTATTTCAAAATGAAAAA
12459609 T
1 T
12459610 GGGAGTCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (18 bp):
TTATTTCAAAATGAAAAA
Found at i:12460552 original size:14 final size:15
Alignment explanation
Indices: 12460528--12460557 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
12460518 ATAAATAGAT
12460528 AAATAGATAATAATA
1 AAATAGATAATAATA
12460543 AAATAG-TAATAATA
1 AAATAGATAATAATA
12460557 A
1 A
12460558 TGAAGGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATAGATAATAATA
Found at i:12460637 original size:41 final size:42
Alignment explanation
Indices: 12460592--12460684 Score: 102
Period size: 45 Copynumber: 2.2 Consensus size: 42
12460582 TCGATGAAAG
12460592 TAAATAA-AA-AATTAAAATATAAAAAATGAACGAATA-ATAAA
1 TAAATAACAAGAATTAAAATA-AAAAAATGAA-GAATATATAAA
* *
12460633 TAAATGAATACAAGAATTAAAATAAAAAAATGAATAATATATGAA
1 TAAAT--A-ACAAGAATTAAAATAAAAAAATGAAGAATATATAAA
12460678 TAAATAA
1 TAAATAA
12460685 GTAAATGAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
41 5 0.11
42 1 0.02
43 2 0.05
44 5 0.11
45 21 0.48
46 10 0.23
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (42 bp):
TAAATAACAAGAATTAAAATAAAAAAATGAAGAATATATAAA
Found at i:12460693 original size:53 final size:52
Alignment explanation
Indices: 12460623--12460767 Score: 134
Period size: 53 Copynumber: 2.8 Consensus size: 52
12460613 AAAAATGAAC
* * *
12460623 GAAT-AATAAATAAATGAATACAAGAATTAAAATAAAAAAATGAATAA-TATAT
1 GAATAAATAAGTAAATGAATA-AAGAATTAAAATAAAAAAAGGAATAAGGA-AT
* * * *
12460675 GAATAAATAAGTAAATGAACAAATAAATGAATAA-AATAAAAGGAATAAGGAAT
1 GAATAAATAAGTAAATGAATAAA-GAATTAA-AATAAAAAAAGGAATAAGGAAT
* * *
12460728 AAATAAACAAGTAAATAAATAAAAGAATTAAAATAAAAAA
1 GAATAAATAAGTAAATGAAT-AAAGAATTAAAATAAAAAA
12460768 GGGCTTAATT
Statistics
Matches: 73, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
52 8 0.11
53 59 0.81
54 6 0.08
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.21
Consensus pattern (52 bp):
GAATAAATAAGTAAATGAATAAAGAATTAAAATAAAAAAAGGAATAAGGAAT
Found at i:12463733 original size:26 final size:25
Alignment explanation
Indices: 12463704--12463765 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
12463694 TCTCATCCCT
12463704 ATTTTATCCCTACTAAAATTTTAACA
1 ATTTTA-CCCTACTAAAATTTTAACA
* *
12463730 ATTTTA-CCTATCGTAAAATTTTTGACG
1 ATTTTACCCTA-C-TAAAA-TTTTAACA
12463757 ATTTTACCC
1 ATTTTACCC
12463766 CTGGTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 4 0.13
25 1 0.03
26 11 0.37
27 12 0.40
28 2 0.07
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.44
Consensus pattern (25 bp):
ATTTTACCCTACTAAAATTTTAACA
Found at i:12471472 original size:50 final size:49
Alignment explanation
Indices: 12471212--12471836 Score: 496
Period size: 50 Copynumber: 12.6 Consensus size: 49
12471202 AAGATTTGCC
* * * * *
12471212 GTTGTGGCCTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGATTCGCC
1 GTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
* * ** ** * *
12471261 ATTGTAGCTTCAATCTGTTACGCTGC-AT-TACTTGGAAGTAAGATCTGCC
1 GTTGTAGCTTCAATCTTTTA-ATTGCAATGT-CAGGGAAGTAAGATCCGCT
* * * *
12471310 GTCGTGGCCTCAATCTTTTAAATTGCAATGTCGAGGG-AGTAAGATCCGCC
1 GTTGTAGCTTCAATCTTTT-AATTGCAATGTC-AGGGAAGTAAGATCCGCT
* * ** ** *
12471360 ATTGTAGCTTCAATCTGTT-CCT-CTAGATCG-CTTGGAAGTAAGATCCGCC
1 GTTGTAGCTTCAATCTTTTAATTGC-A-AT-GTCAGGGAAGTAAGATCCGCT
* * * * * *
12471409 GTCGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCT
1 GTTGTAGCTTCAATCTTTT-AATTGCAATGTCAGGGAAGTAAGATCCGCT
* * * * *
12471459 GTTGTAGCTTCAAT-TTGTTCCACTGCAACGTTAGGAAAGTAAGATCCGCT
1 GTTGTAGCTTCAATCTT-TT-AATTGCAATGTCAGGGAAGTAAGATCCGCT
*
12471509 GTTGTAGCTTCAATCTTCTTAATTACAATGTCAGGGAAGTAAGATCCGCT
1 GTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATCCGCT
** * *
12471559 GTTGTAGCTTCAATCTATTCCACTGCAATG-CTAGGAAAGTAAGATCCGCT
1 GTTGTAGCTTCAATCT-TTTAATTGCAATGTC-AGGGAAGTAAGATCCGCT
12471609 GTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
1 GTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATCCGCT
** * ** * * * **
12471659 GTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAAAGTAAGATATGCT
1 GTTGTAGCTTCAATCT-TTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
*
12471709 GTTTTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
1 GTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGGAAGTAAGATCCGCT
* * * * *
12471759 GTTGTAGCTTCAAT-TTGTTCCACTGCAACG-CTAGGAAAGTAAGATCTGCT
1 GTTGTAGCTTCAATCTT-TT-AATTGCAATGTC-AGGGAAGTAAGATCCGCT
12471809 GTTGTAGCTTCAATCTTCTTAATTGCAA
1 GTTGTAGCTTCAATCTT-TTAATTGCAA
12471837 ACTATGGTTT
Statistics
Matches: 450, Mismatches: 101, Indels: 49
0.75 0.17 0.08
Matches are distributed among these distances:
47 1 0.00
48 5 0.01
49 90 0.20
50 337 0.75
51 16 0.04
52 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (49 bp):
GTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCT
Found at i:12471540 original size:100 final size:100
Alignment explanation
Indices: 12471138--12471836 Score: 796
Period size: 100 Copynumber: 7.0 Consensus size: 100
12471128 ATCTGTTTAA
** * ** *
12471138 AATGTCAGGGAAGCGAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGTACCTAC-TTAGG-AA
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTG---CAACGTTAGGAAA
* * * *
12471201 -TAAGATTTGCCGTTGTGGCCTCAATCTT-TTAATTGC
63 GTAAGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
* * ** * *
12471237 AATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTACGCTGCATTAC-TT-GG-AAG
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCA--ACGTTAGGAAAG
* * * *
12471299 TAAGATCTGCCGTCGTGGCCTCAATCTT-TTAAATTGC
64 TAAGATCTGCTGTTGTAGCTTCAATCTTCTT-AATTGC
** * *
12471336 AATGTCGAGGG-AGTAAGATCCGCCATTGTAGCTTCAATCTGTTCCTCTAG-ATCGCTT-GG-AA
1 AATGTC-AGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACT-GCAACG-TTAGGAAA
* * * * *
12471397 GTAAGATCCGCCGTCGTGGCCTCAATCTT-TTAAATTGC
63 GTAAGATCTGCTGTTGTAGCTTCAATCTTCTT-AATTGC
* * * *
12471435 AATGTCGGGGAAGTGAGATTCGCTGTTGTAGCTTCAATTTGTTCCACTGCAACGTTAGGAAAGTA
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGTTAGGAAAGTA
* *
12471500 AGATCCGCTGTTGTAGCTTCAATCTTCTTAATTAC
66 AGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
* * *
12471535 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTATTCCACTGCAATGCTAGGAAAGTA
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGTTAGGAAAGTA
*
12471600 AGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGC
66 AGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
* *
12471635 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-GGAAAGT
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-TTAGGAAAGT
* *
12471699 AAGATATGCTGTTTTAGCTTCAATCTTCTTAATTGC
65 AAGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
* *
12471735 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATTTGTTCCACTGCAACGCTAGGAAAGTA
1 AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGTTAGGAAAGTA
12471800 AGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
66 AGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
12471835 AA
1 AA
12471837 ACTATGGTTT
Statistics
Matches: 542, Mismatches: 43, Indels: 29
0.88 0.07 0.05
Matches are distributed among these distances:
96 1 0.00
97 5 0.01
98 38 0.07
99 179 0.33
100 315 0.58
101 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (100 bp):
AATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGTTAGGAAAGTA
AGATCTGCTGTTGTAGCTTCAATCTTCTTAATTGC
Found at i:12493664 original size:19 final size:19
Alignment explanation
Indices: 12493629--12493678 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
12493619 TTTATACATG
* *
12493629 TACATATTTATATTTTATA
1 TACATATCTATAATTTATA
* *
12493648 TATATTTCTATAATTTATA
1 TACATATCTATAATTTATA
12493667 TACATATCTATA
1 TACATATCTATA
12493679 TATATCTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (19 bp):
TACATATCTATAATTTATA
Found at i:12495804 original size:24 final size:25
Alignment explanation
Indices: 12495756--12495805 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
12495746 CGTCTCTTTT
* * *
12495756 TTGCATTCATCTGCATTACATTTCA
1 TTGCATTCATATGCATTAAACTTCA
12495781 TTGCA-TCATATGCATTAAACTTCA
1 TTGCATTCATATGCATTAAACTTCA
12495805 T
1 T
12495806 AAGAAGACCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (25 bp):
TTGCATTCATATGCATTAAACTTCA
Found at i:12498930 original size:13 final size:13
Alignment explanation
Indices: 12498883--12498924 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
12498873 AAAAACAAAC
*
12498883 AAAAAAAAAGAA-
1 AAAAGAAAAGAAG
12498895 AAAAGAAAAGAAG
1 AAAAGAAAAGAAG
12498908 AAAAGAAAAGAAG
1 AAAAGAAAAGAAG
12498921 AAAA
1 AAAA
12498925 ATAAAGGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAGAAG
Found at i:12500326 original size:137 final size:137
Alignment explanation
Indices: 12500116--12500374 Score: 304
Period size: 137 Copynumber: 1.9 Consensus size: 137
12500106 AAATAACAAG
* ** * * **
12500116 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAACATAGCGAATCTTATTTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAATTACAGTGGAGCAGACTAAACATAACAAATCTTATCACCCTAAAGTTGC
* * * * * *
12500181 AATGGAACAGATTAAAGCTGTAAATTACAGATC-TTATCTCTCTGAAGTTGCAGTAAAGTAGATC
66 AATAGAACAGACTAAAGCTATAAATCACA-AACATTATCTCTCTAAAGTTGCAGTAAAGTAGATC
12500245 ACATCAAA
130 ACATCAAA
* * * * * *
12500253 TCTTATCTCCCTGAAATTACAGTGGAGCAGACTGAATATAACAAATCTTATCACTCTGAATTTGT
1 TCTTATCTCCCTGAAATTACAGTGGAGCAGACTAAACATAACAAATCTTATCACCCTAAAGTTGC
* * *
12500318 AGTAGAACAGACTGAAGCTATAAATCACAAACATTATCTCTCTAAAGTTGTAGTAAA
66 AATAGAACAGACTAAAGCTATAAATCACAAACATTATCTCTCTAAAGTTGCAGTAAA
12500375 ACAAGCTGAA
Statistics
Matches: 99, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
136 2 0.02
137 97 0.98
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (137 bp):
TCTTATCTCCCTGAAATTACAGTGGAGCAGACTAAACATAACAAATCTTATCACCCTAAAGTTGC
AATAGAACAGACTAAAGCTATAAATCACAAACATTATCTCTCTAAAGTTGCAGTAAAGTAGATCA
CATCAAA
Found at i:12500329 original size:45 final size:45
Alignment explanation
Indices: 12500280--12500399 Score: 109
Period size: 51 Copynumber: 2.6 Consensus size: 45
12500270 TACAGTGGAG
* * * *
12500280 CAGACTGAATATAACAAATCTTATCACTCTGAATTTGTAGTAGAA
1 CAGACTGAATATAACAAAACTTATCACTCTAAAGTTGTAGTAAAA
*
12500325 CAGACTGAAGCTATAAATCACAAACATTATCTCTCTAAAGTTGTAGTAAAA
1 CAGACTGAA--TAT-AA-CA-AAAC-TTATCACTCTAAAGTTGTAGTAAAA
*
12500376 CA-AGCTGAA-ATAACAAACCTTATC
1 CAGA-CTGAATATAACAAAACTTATC
12500400 CCCCTGAAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
44 5 0.08
45 12 0.19
46 2 0.03
47 5 0.08
48 4 0.06
49 2 0.03
50 4 0.06
51 28 0.45
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (45 bp):
CAGACTGAATATAACAAAACTTATCACTCTAAAGTTGTAGTAAAA
Found at i:12502308 original size:19 final size:19
Alignment explanation
Indices: 12502258--12502310 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
12502248 TGATTTATAC
* *
12502258 ATGTACATATTTATATTTT
1 ATGTACATATCTATAATTT
* * *
12502277 ATATATATTTCTATAATTT
1 ATGTACATATCTATAATTT
12502296 ATGTACATATCTATA
1 ATGTACATATCTATA
12502311 TATATCTATA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.53
Consensus pattern (19 bp):
ATGTACATATCTATAATTT
Found at i:12511107 original size:66 final size:69
Alignment explanation
Indices: 12511013--12511139 Score: 181
Period size: 66 Copynumber: 1.9 Consensus size: 69
12511003 TGTATATACA
* * *
12511013 ATATAATTTATTAAAAATTAAAATTTAGATTATAAGTACATAT-T-TG-AAAATATTTAAATGTA
1 ATATAATTTATTAAAAACTAAAATTTAGACTATAAATACATATATATGAAAAATATTTAAATGTA
12511075 TAAT
66 TAAT
*
12511079 ATATAATTTATTAAGAAACTAAAA-TTAGACTATAAATATATATATATGAAAAATATTTAAA
1 ATATAATTTATTAA-AAACTAAAATTTAGACTATAAATACATATATATGAAAAATATTTAAA
12511140 AACATAGTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
66 30 0.57
67 9 0.17
68 2 0.04
69 12 0.23
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (69 bp):
ATATAATTTATTAAAAACTAAAATTTAGACTATAAATACATATATATGAAAAATATTTAAATGTA
TAAT
Found at i:12511375 original size:15 final size:15
Alignment explanation
Indices: 12511355--12511399 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
12511345 CCAGCACAAG
*
12511355 ACAGAGCAGAACATA
1 ACAGAGCAGAACAGA
*
12511370 ACAGAGCAGAATAGA
1 ACAGAGCAGAACAGA
*
12511385 ACAGAGCATAACAGA
1 ACAGAGCAGAACAGA
12511400 GTAGAACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.53, C:0.18, G:0.22, T:0.07
Consensus pattern (15 bp):
ACAGAGCAGAACAGA
Found at i:12511399 original size:20 final size:20
Alignment explanation
Indices: 12511376--12511433 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
12511366 CATAACAGAG
*
12511376 CAGAATAGAACAGAGCATAA
1 CAGAGTAGAACAGAGCATAA
*
12511396 CAGAGTAGAACTA-AACATAA
1 CAGAGTAGAAC-AGAGCATAA
*
12511416 AAGAGTAGAACAGAGCAT
1 CAGAGTAGAACAGAGCAT
12511434 GTATGTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.53, C:0.14, G:0.21, T:0.12
Consensus pattern (20 bp):
CAGAGTAGAACAGAGCATAA
Found at i:12511400 original size:40 final size:40
Alignment explanation
Indices: 12511355--12511433 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
12511345 CCAGCACAAG
**
12511355 ACAGAGCAGAAC-ATAACAGAGCAGAATAGAACAGAGCATA
1 ACAGAGCAGAACTA-AACAGAAAAGAATAGAACAGAGCATA
* * *
12511395 ACAGAGTAGAACTAAACATAAAAGAGTAGAACAGAGCAT
1 ACAGAGCAGAACTAAACAGAAAAGAATAGAACAGAGCAT
12511434 GTATGTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.53, C:0.15, G:0.22, T:0.10
Consensus pattern (40 bp):
ACAGAGCAGAACTAAACAGAAAAGAATAGAACAGAGCATA
Found at i:12518777 original size:13 final size:13
Alignment explanation
Indices: 12518759--12518792 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
12518749 TATCTCTAGA
12518759 AATTTTCTAAAAG
1 AATTTTCTAAAAG
* *
12518772 AATTTTTTTAAAG
1 AATTTTCTAAAAG
12518785 AATTTTCT
1 AATTTTCT
12518793 CTCTACAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (13 bp):
AATTTTCTAAAAG
Found at i:12520918 original size:12 final size:12
Alignment explanation
Indices: 12520901--12520925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12520891 TAAATCAGAA
12520901 AAAATAAAAATT
1 AAAATAAAAATT
12520913 AAAATAAAAATT
1 AAAATAAAAATT
12520925 A
1 A
12520926 CATTCGGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATAAAAATT
Found at i:12521253 original size:6 final size:7
Alignment explanation
Indices: 12521236--12521260 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12521226 ACAGAAGCAA
12521236 AAAAATC
1 AAAAATC
12521243 AAAAATC
1 AAAAATC
12521250 AAAAATC
1 AAAAATC
12521257 AAAA
1 AAAA
12521261 CAACAGCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATC
Found at i:12521550 original size:26 final size:25
Alignment explanation
Indices: 12521521--12521576 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
12521511 GAAATAGAAG
*
12521521 AGAAAGAGAGGAGAAGGAAAGAAAA-A
1 AGAAAGAAAGGAG-A-GAAAGAAAAGA
12521547 AGAAAGAAAGGAGAGAAAGAAAAGA
1 AGAAAGAAAGGAGAGAAAGAAAAGA
12521572 AGAAA
1 AGAAA
12521577 AAAAAGGGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 9 0.32
25 7 0.25
26 12 0.43
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (25 bp):
AGAAAGAAAGGAGAGAAAGAAAAGA
Found at i:12521750 original size:7 final size:7
Alignment explanation
Indices: 12521735--12521770 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
12521725 TAGGGTTTTC
*
12521735 GAAAGAA
1 GAAAAAA
12521742 GAAAAAA
1 GAAAAAA
12521749 GAAAAAA
1 GAAAAAA
12521756 GAAAAAGA
1 GAAAAA-A
12521764 GAAAAAA
1 GAAAAAA
12521771 ATTTAAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:12522105 original size:10 final size:10
Alignment explanation
Indices: 12522090--12522128 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
12522080 AAGGGAAGGG
12522090 AAAAAAGAGAA
1 AAAAAAGAG-A
12522101 AAAAAAGAGA
1 AAAAAAGAGA
*
12522111 AAAAAAGAGG
1 AAAAAAGAGA
12522121 AAAAAAGA
1 AAAAAAGA
12522129 AAGAAAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAAAGAGA
Found at i:12522106 original size:11 final size:11
Alignment explanation
Indices: 12522090--12522137 Score: 64
Period size: 11 Copynumber: 4.4 Consensus size: 11
12522080 AAGGGAAGGG
12522090 AAAAAAGAGAA
1 AAAAAAGAGAA
12522101 AAAAAAGAG-A
1 AAAAAAGAGAA
12522111 AAAAAAGAGGAA
1 AAAAAAGA-GAA
12522123 AAAAGAA-AGAA
1 AAAA-AAGAGAA
12522134 AAAA
1 AAAA
12522138 CCCAGTCGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.26
11 17 0.50
12 6 0.18
13 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAAGAGAA
Found at i:12522116 original size:21 final size:22
Alignment explanation
Indices: 12522090--12522137 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
12522080 AAGGGAAGGG
12522090 AAAAAAGA-GAAAAAA-AAGAGA
1 AAAAAAGAGGAAAAAAGAA-AGA
12522111 AAAAAAGAGGAAAAAAGAAAGA
1 AAAAAAGAGGAAAAAAGAAAGA
12522133 AAAAA
1 AAAAA
12522138 CCCAGTCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 8 0.32
22 15 0.60
23 2 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAAAAGAGGAAAAAAGAAAGA
Found at i:12522135 original size:10 final size:11
Alignment explanation
Indices: 12522091--12522136 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
12522081 AGGGAAGGGA
*
12522091 AAAAAGAGAAA
1 AAAAAGAGAAG
12522102 AAAAAGAGAA-
1 AAAAAGAGAAG
*
12522112 AAAAAGAGGA-
1 AAAAAGAGAAG
12522122 AAAAAGA-AAG
1 AAAAAGAGAAG
12522132 AAAAA
1 AAAAA
12522137 ACCCAGTCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 1 0.03
10 21 0.66
11 10 0.31
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAAGAGAAG
Found at i:12522554 original size:17 final size:17
Alignment explanation
Indices: 12522532--12522587 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
12522522 GTAATTTACC
12522532 AAAATTTTCGTGTTTCA
1 AAAATTTTCGTGTTTCA
*
12522549 AAAATTTTCATGCTTTCAA
1 AAAATTTTCGTG-TTTC-A
* *
12522568 AAAATTCTCGTGTTTTA
1 AAAATTTTCGTGTTTCA
12522585 AAA
1 AAA
12522588 TAAAATGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 15 0.45
18 7 0.21
19 11 0.33
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (17 bp):
AAAATTTTCGTGTTTCA
Found at i:12522587 original size:18 final size:18
Alignment explanation
Indices: 12522532--12522587 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
12522522 GTAATTTACC
*
12522532 AAAATTTTCGTG-TTTCA
1 AAAATTTTCGTGTTTTAA
* *
12522549 AAAATTTTCATGCTTTCAA
1 AAAATTTTCGTG-TTTTAA
*
12522568 AAAATTCTCGTGTTTTAA
1 AAAATTTTCGTGTTTTAA
12522586 AA
1 AA
12522588 TAAAATGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 11 0.35
18 7 0.23
19 13 0.42
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43
Consensus pattern (18 bp):
AAAATTTTCGTGTTTTAA
Found at i:12528734 original size:7 final size:7
Alignment explanation
Indices: 12528717--12528756 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
12528707 TATTATGCCT
12528717 AAAAATAA
1 AAAAAT-A
12528725 AAAAATA
1 AAAAATA
12528732 AAAAAT-
1 AAAAATA
12528738 AAAAATA
1 AAAAATA
*
12528745 AAAAACA
1 AAAAATA
12528752 AAAAA
1 AAAAA
12528757 AAAGACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
6 6 0.20
7 18 0.60
8 6 0.20
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAAATA
Found at i:12528741 original size:13 final size:13
Alignment explanation
Indices: 12528725--12528766 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
12528715 CTAAAAATAA
*
12528725 AAAAATAAAAAAT
1 AAAAATAAAAAAC
12528738 AAAAATAAAAAAC
1 AAAAATAAAAAAC
*
12528751 AAAAA-AAAAGAC
1 AAAAATAAAAAAC
12528763 AAAA
1 AAAA
12528767 TCAAGATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.86, C:0.05, G:0.02, T:0.07
Consensus pattern (13 bp):
AAAAATAAAAAAC
Found at i:12528741 original size:21 final size:22
Alignment explanation
Indices: 12528716--12528758 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
12528706 ATATTATGCC
*
12528716 TAAAAATAAAAAA-ATAAAAAA
1 TAAAAATAAAAAACAAAAAAAA
12528737 TAAAAATAAAAAACAAAAAAAA
1 TAAAAATAAAAAACAAAAAAAA
12528759 AGACAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.12
Consensus pattern (22 bp):
TAAAAATAAAAAACAAAAAAAA
Found at i:12529744 original size:78 final size:77
Alignment explanation
Indices: 12529643--12531021 Score: 1638
Period size: 78 Copynumber: 18.0 Consensus size: 77
12529633 TGTTTTATTT
* * * *
12529643 ATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACACCGAGGTATTTTTTAATTTAT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-TTTTCAATTTCT
12529708 GTTTTTCAAAAAA
65 GTTTTTCAAAAAA
* *
12529721 ACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTTAATTT-T
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-TTTTCAATTTCT
*
12529785 AATTTTTCAAAAAA
65 -GTTTTTCAAAAAA
* * *
12529799 ATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTAATTTCTA
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12529864 TTTTTCAAAAAAA
66 TTTTTC-AAAAAA
* * *
12529877 ATCAACTCATA-TGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATCTTTTAATTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-TTTCAATTTCT
12529941 GTTTTTC--AAAA
65 GTTTTTCAAAAAA
** * * *
12529952 ATCAACTCATATTGTTAGAGGTGAGTTGAGCCTTGGGTCGCACGCCGAGGTATTTTCAATTTTTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530017 TTTTTCAAAAAA
66 TTTTTCAAAAAA
* *
12530029 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530094 TTTTTCAAAAAA
66 TTTTTCAAAAAA
* * * * *
12530106 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCTGGTCACATGCCGAGGTATCTTTTAATTTTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-TTTCAATTTCT
12530171 GTTTTTC--AAAA
65 GTTTTTCAAAAAA
* * * * * *
12530182 ATTAACTCATATTACAAGAGGTGAGTTAAGCCTCGGGCCGCACGCCGAGGTATTTTCAATTT-T-
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
*
12530245 TTTTTC--ATAA
66 TTTTTCAAAAAA
* * * *
12530255 ATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCATGCCGAGGTATTTTCAATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530320 TTTTTCAAAAAAA
66 TTTTTC-AAAAAA
* * * *
12530333 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGCCGCACGCCGAGATATTTTCAATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530398 TTTTTC--AAAA
66 TTTTTCAAAAAA
* * * * * * * *
12530408 ATCAACTTATAATGCGAGAGGTGAGTTAAGCCTTGGGTCGCACACCGAGGTATTTTCAATTTTTA
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530473 TTTTTCAAAAAAA
66 TTTTTC-AAAAAA
* * *
12530486 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGCCGCACGCCGAGGTATTTTCAATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
12530551 TTTTTCAAAAAAAAA
66 TTTTTC---AAAAAA
* *
12530566 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGCCGAGGTATCTTT-AATTTCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-TTTCAATTTCT
12530630 GTTTTTC--AAAA
65 GTTTTTCAAAAAA
* * * * * *
12530641 ATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGG-CTGCATGCCGAGATATTTTCAATTTTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC-ACACGCCGAGGTATTTTCAATTTCT
*
12530705 G-TTTTAAAAAAA
65 GTTTTTCAAAAAA
* * *
12530717 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATCTTT-AATTTCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT-TTTCAATTTCT
* *
12530781 G-TTTTC-CAAAT
65 GTTTTTCAAAAAA
* * * * * *
12530792 ATCAACTCATAATGCGAGAGGTGAGTTGAGCATTGGGTCAAATGTCGAGGTACTTTT-AATTTCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-TTTTCAATTTCT
*
12530856 GTTTTTC--AAGA
65 GTTTTTCAAAAAA
* * * * *
12530867 ATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGGGGTATTTTTCAATTTAT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-TTTTCAATTTCT
*
12530932 G-TTTTAAAAAAA
65 GTTTTTCAAAAAA
** * * * * * * *
12530944 ATCAACTCATGGCT-CGAGAGGTGAATTGAGCTTCGGGTCGCACGTCAAGCTATTTTCAATCTCT
1 ATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCT
*
12531008 ATTTTTCAAAAAA
65 GTTTTTCAAAAAA
12531021 A
1 A
12531022 AAAGTTTTTT
Statistics
Matches: 1148, Mismatches: 121, Indels: 65
0.86 0.09 0.05
Matches are distributed among these distances:
73 63 0.05
74 10 0.01
75 283 0.25
76 169 0.15
77 242 0.21
78 308 0.27
80 70 0.06
81 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (77 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAATTTCTG
TTTTTCAAAAAA
Found at i:12530021 original size:153 final size:152
Alignment explanation
Indices: 12529622--12531019 Score: 1619
Period size: 153 Copynumber: 9.2 Consensus size: 152
12529612 CAAGAATTAT
*** * *
12529622 TTTTCAATTTCTG-TTTT-ATTTATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
* * * *
12529685 CACCGAGGTATTTTTTAATTTATGTTTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCCGAGGTA-TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
12529750 GCCTCGGGTCACACGCCGAGGTA
130 GCCTCGGGTCACACGCCGAGGTA
* * * *
12529773 TTTTTTAATTT-TAATTTTTCAAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGT
1 -TTTTCAATTTCT-GTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGT
* *
12529837 CACACGCCGAGGTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATA-TGCGAGAGGTGAG
62 CACACGCCGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAG
*
12529901 TTGAGCCTCGGGTCACATGCCGAGGTA
126 TTGAGCCTCGGGTCACACGCCGAGGTA
* * ** *
12529928 TCTTTTAATTGCTGTTTTTCAAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTTGGGTCGC
1 T-TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC
* *
12529993 ACGCCGAGGTATTTTCAATTTTTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGA
65 ACGCCGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
12530058 GCCTCGGGTCACATGCCGAGGTA
130 GCCTCGGGTCACACGCCGAGGTA
*
12530081 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCT-GGTC
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGGTC
* * * * * *
12530145 ACATGCCGAGGTATCTTTTAATTTTTGTTTTTC--AAAAATTAACTCATATTACAAGAGGTGAGT
63 ACACGCCGAGGTAT-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
12530208 TAAGCCTCGGGCCGCACGCCGAGGTA
127 TGAGCCTCGGGTCACACGCCGAGGTA
* * *
12530234 TTTTCAATTT-T-TTTTTCATAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
*
12530297 TGCCGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCCGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
12530362 GCCACGGGCCGCACGCCGAGATA
130 GCCTCGGGTCACACGCCGAGGTA
* * * *
12530385 TTTTCAATTTCTGTTTTTCAAAAATCAACTTATAATGCGAGAGGTGAGTTAAGCCTTGGGTCGCA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
* * *
12530450 CACCGAGGTATTTTCAATTTTTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCCGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
12530515 GCCTAGGGCCGCACGCCGAGGTA
130 GCCTCGGGTCACACGCCGAGGTA
12530538 TTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG
1 TTTTCAATTTCTGTTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGG
* *
12530603 TCACATGCCGAGGTATCTTT-AATTTCTGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGA
61 TCACACGCCGAGGTAT-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
* * * *
12530665 GTTGAGCCTTGGG-CTGCATGCCGAGATA
125 GTTGAGCCTCGGGTC-ACACGCCGAGGTA
* ** * *
12530693 TTTTCAATTTTTGTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
1 TTTTCAATTTCTGTTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC
* * * * *
12530758 ATGTCGAGGTATCTTT-AATTTCTG-TTTTC-CAAATATCAACTCATAATGCGAGAGGTGAGTTG
65 ACGCCGAGGTAT-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * *
12530820 AGCATTGGGTCAAATGTCGAGGTA
129 AGCCTCGGGTCACACGCCGAGGTA
* * * *
12530844 CTTTT-AATTTCTGTTTTTCAAGAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGC
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCAC
* * * * ** *
12530908 ACGCTGGGGTATTTTTCAATTTATG-TTTTAAAAAAAATCAACTCATGGCT-CGAGAGGTGAATT
65 ACGCCGAGGTA-TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT
* * * * *
12530971 GAGCTTCGGGTCGCACGTCAAGCTA
128 GAGCCTCGGGTCACACGCCGAGGTA
* *
12530996 TTTTCAATCTCTATTTTTCAAAAA
1 TTTTCAATTTCTGTTTTTCAAAAA
12531020 AAAAAGTTTT
Statistics
Matches: 1100, Mismatches: 111, Indels: 70
0.86 0.09 0.05
Matches are distributed among these distances:
148 17 0.02
149 51 0.05
150 56 0.05
151 208 0.19
152 108 0.10
153 321 0.29
154 52 0.05
155 154 0.14
156 67 0.06
158 63 0.06
159 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (152 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACA
CGCCGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCGGGTCACACGCCGAGGTA
Found at i:12532163 original size:6 final size:6
Alignment explanation
Indices: 12532136--12532189 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
12532126 AGGTTTTTCG
* * *
12532136 AAAGAA GAA-AA AAAGAA GAAGAA AAAGAA AAAG-- AAAGAA AAGGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
12532181 AGAGAA AAA
1 AAAGAA AAA
12532190 AATTTAAAAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
4 4 0.11
5 4 0.11
6 29 0.78
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:12532181 original size:22 final size:22
Alignment explanation
Indices: 12532136--12532191 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
12532126 AGGTTTTTCG
12532136 AAAGAAGAAAAAAAGAAGAAGAA
1 AAAGAA-AAAAAAAGAAGAAGAA
*
12532159 AAAGAAAAAGAAAGAA-AAGGAA
1 AAAGAAAAAAAAAGAAGAA-GAA
*
12532181 AGAGAAAAAAA
1 AAAGAAAAAAA
12532192 TTTAAAACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 21 0.72
23 6 0.21
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAGAAAAAAAAAGAAGAAGAA
Found at i:12532525 original size:7 final size:7
Alignment explanation
Indices: 12532513--12532560 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
12532503 GGGAAGGGGA
12532513 AAAAAAG
1 AAAAAAG
12532520 AAAAAAG
1 AAAAAAG
*
12532527 AAAAGAG
1 AAAAAAG
12532534 AAAAAAAG
1 -AAAAAAG
*
12532542 GAAAAA-
1 AAAAAAG
12532548 AAAAAAG
1 AAAAAAG
12532555 AAAAAA
1 AAAAAA
12532561 CCCGGTCGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 5 0.14
7 24 0.69
8 6 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:12532938 original size:17 final size:17
Alignment explanation
Indices: 12532916--12532971 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
12532906 GTAATTTACC
12532916 AAAATTTTCGTGTTTCA
1 AAAATTTTCGTGTTTCA
*
12532933 AAAATTTTAGTGTTTTCAA
1 AAAATTTTCGTG-TTTC-A
* *
12532952 AAAATTCTCGTGTTTTA
1 AAAATTTTCGTGTTTCA
12532969 AAA
1 AAA
12532972 TAAAATGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 15 0.45
18 7 0.21
19 11 0.33
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.45
Consensus pattern (17 bp):
AAAATTTTCGTGTTTCA
Found at i:12532956 original size:19 final size:19
Alignment explanation
Indices: 12532916--12532971 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
12532906 GTAATTTACC
12532916 AAAATTTTCGTG-TTTC-A
1 AAAATTTTCGTGTTTTCAA
*
12532933 AAAATTTTAGTGTTTTCAA
1 AAAATTTTCGTGTTTTCAA
*
12532952 AAAATTCTCGTGTTTT-AA
1 AAAATTTTCGTGTTTTCAA
12532970 AA
1 AA
12532972 TAAAATGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 11 0.32
18 8 0.24
19 15 0.44
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.45
Consensus pattern (19 bp):
AAAATTTTCGTGTTTTCAA
Found at i:12538526 original size:25 final size:26
Alignment explanation
Indices: 12538493--12538544 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
12538483 TTGTTTGTGG
*
12538493 TTTATGGGTTTAATG-TTTATGGTTAA
1 TTTATGGGTTTAA-GATCTATGGTTAA
12538519 TTTA-GGGTTTAAGATCTATGGTTAA
1 TTTATGGGTTTAAGATCTATGGTTAA
12538544 T
1 T
12538545 GTCTACGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 19 0.79
26 4 0.17
ACGTcount: A:0.25, C:0.02, G:0.23, T:0.50
Consensus pattern (26 bp):
TTTATGGGTTTAAGATCTATGGTTAA
Found at i:12538643 original size:7 final size:7
Alignment explanation
Indices: 12538615--12538685 Score: 65
Period size: 7 Copynumber: 10.4 Consensus size: 7
12538605 AATTGACGGG
12538615 TTAGGGT
1 TTAGGGT
* *
12538622 TTAAGTT
1 TTAGGGT
*
12538629 TTACGGT
1 TTAGGGT
*
12538636 TTGGGGT
1 TTAGGGT
12538643 TTAGGGT
1 TTAGGGT
12538650 TTAGGGT
1 TTAGGGT
*
12538657 TAAGGGT
1 TTAGGGT
*
12538664 ATA--GT
1 TTAGGGT
12538669 TTAGGGT
1 TTAGGGT
*
12538676 TTAGGAT
1 TTAGGGT
12538683 TTA
1 TTA
12538686 CAATTAATTA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
5 4 0.08
7 46 0.92
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:12539372 original size:12 final size:12
Alignment explanation
Indices: 12539355--12539412 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
12539345 CACTTAGCCG
12539355 AAATTCCCCCCA
1 AAATTCCCCCCA
*
12539367 AAATTCTCCCCA
1 AAATTCCCCCCA
* *
12539379 AAATTTCCCCCG
1 AAATTCCCCCCA
** *
12539391 ATTTTTCCCCCA
1 AAATTCCCCCCA
*
12539403 AAAATCCCCC
1 AAATTCCCCC
12539413 AATTCTAGAA
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.29, C:0.45, G:0.02, T:0.24
Consensus pattern (12 bp):
AAATTCCCCCCA
Found at i:12541232 original size:16 final size:16
Alignment explanation
Indices: 12541171--12541249 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
12541161 ACACATAGCC
* *
12541171 TACATGACTTACTTAA
1 TACATAACTTACATAA
* *
12541187 TACACAACTTAAATAA
1 TACATAACTTACATAA
*
12541203 TTTAAATAACTTACATAA
1 --TACATAACTTACATAA
12541221 TACATAACTTACAT--
1 TACATAACTTACATAA
12541235 T-CATAACTTACATAA
1 TACATAACTTACATAA
12541250 ACTTATATGT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 12 0.24
14 1 0.02
16 25 0.49
18 13 0.25
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:12541241 original size:13 final size:15
Alignment explanation
Indices: 12541208--12541248 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 15
12541198 AATAATTTAA
12541208 ATAACTTACATAATAC
1 ATAACTTACAT-ATAC
12541224 ATAACTTACAT-T-C
1 ATAACTTACATATAC
12541237 ATAACTTACATA
1 ATAACTTACATA
12541249 AACTTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
16 11 0.46
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAACTTACATATAC
Found at i:12541327 original size:16 final size:15
Alignment explanation
Indices: 12541306--12541378 Score: 57
Period size: 16 Copynumber: 4.9 Consensus size: 15
12541296 TATATAAACT
12541306 TACATAATACATAGCA
1 TACATAATACATA-CA
12541322 TACATAACTTACATA-A
1 TACATAA--TACATACA
*
12541338 TACATAATAACTTACA
1 TACATAAT-ACATACA
12541354 -AC-T--TACATAACA
1 TACATAATACAT-ACA
12541366 TACATAATACATA
1 TACATAATACATA
12541379 ATAACTTACA
Statistics
Matches: 46, Mismatches: 2, Indels: 19
0.69 0.03 0.28
Matches are distributed among these distances:
11 3 0.07
12 4 0.09
13 2 0.04
14 3 0.07
15 7 0.15
16 21 0.46
18 6 0.13
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (15 bp):
TACATAATACATACA
Found at i:12541349 original size:19 final size:20
Alignment explanation
Indices: 12541320--12541388 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 20
12541310 TAATACATAG
12541320 CATACATAACTTACATAATA
1 CATACATAACTTACATAATA
12541340 CATA-ATAACTTAC---A-A
1 CATACATAACTTACATAATA
* *
12541355 CTTACATAACATACATAATA
1 CATACATAACTTACATAATA
12541375 CATA-ATAACTTACA
1 CATACATAACTTACA
12541389 ACTTACATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
15 4 0.10
16 9 0.22
19 19 0.47
20 8 0.20
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (20 bp):
CATACATAACTTACATAATA
Found at i:12541370 original size:35 final size:35
Alignment explanation
Indices: 12541322--12541405 Score: 159
Period size: 35 Copynumber: 2.4 Consensus size: 35
12541312 ATACATAGCA
*
12541322 TACATAACTTACATAATACATAATAACTTACAACT
1 TACATAACATACATAATACATAATAACTTACAACT
12541357 TACATAACATACATAATACATAATAACTTACAACT
1 TACATAACATACATAATACATAATAACTTACAACT
12541392 TACATAACATACAT
1 TACATAACATACAT
12541406 TAATTTGATA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (35 bp):
TACATAACATACATAATACATAATAACTTACAACT
Found at i:12541451 original size:59 final size:59
Alignment explanation
Indices: 12541305--12541505 Score: 228
Period size: 59 Copynumber: 3.3 Consensus size: 59
12541295 TTATATAAAC
* * * * * *
12541305 TTACATAATACATAGCATACATAACTTACAT-A-ATACA-TAATAACTTACAACTTACATAAC
1 TTACATAATACATAACTTAC--AACTTACATAACATACATTAAT-A-TGATAACTTACAGAAG
* * *
12541365 ATACATAATACATAATAACTTACAACTTACATAACATACATTAATTTGATAACTTATAGAAG
1 TTACATAATAC---ATAACTTACAACTTACATAACATACATTAATATGATAACTTACAGAAG
*
12541427 TTACATAATACATAACTTACAACTTACATAACATACATTAATATGATAACTTACATAAG
1 TTACATAATACATAACTTACAACTTACATAACATACATTAATATGATAACTTACAGAAG
12541486 TTACATAATACATAACTTAC
1 TTACATAATACATAACTTAC
12541506 CACTGAACAA
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
59 65 0.53
60 10 0.08
61 9 0.07
62 22 0.18
63 12 0.10
64 4 0.03
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (59 bp):
TTACATAATACATAACTTACAACTTACATAACATACATTAATATGATAACTTACAGAAG
Found at i:12541479 original size:27 final size:25
Alignment explanation
Indices: 12541447--12541505 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 25
12541437 CATAACTTAC
*
12541447 AACTTACATAACATACATTAATATGAT
1 AACTTACATAACATACA-TAATA-CAT
**
12541474 AACTTACATAAGTTACATAATACAT
1 AACTTACATAACATACATAATACAT
12541499 AACTTAC
1 AACTTAC
12541506 CACTGAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 9 0.31
26 5 0.17
27 15 0.52
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.32
Consensus pattern (25 bp):
AACTTACATAACATACATAATACAT
Found at i:12547006 original size:21 final size:21
Alignment explanation
Indices: 12546982--12547032 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
12546972 CTACAACTTA
* *
12546982 AAGCAGATGCGGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
12547003 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
12547024 AAGCTGAGG
1 AAGCAGAGG
12547033 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.41, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:12547027 original size:87 final size:87
Alignment explanation
Indices: 12546916--12547108 Score: 273
Period size: 87 Copynumber: 2.2 Consensus size: 87
12546906 ACACAACTAA
* * *
12546916 AAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAAC
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAGC-AGCAAC
*
12546979 TTAAAGCAGATGCGGCAACGAGAG
64 TTAAAGCAGATGCAGCAACGAGAG
* *
12547003 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTT
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
* *
12547068 AAAGCAGATGCAGTAGCGAGAG
66 AAAGCAGATGCAGCAACGAGAG
*
12547090 AAGCAGAGGCTGCAGCGAG
1 AAGCAGAGGCAGCAGCGAG
12547109 GGAATCAGAG
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 1 0.01
87 90 0.95
88 4 0.04
ACGTcount: A:0.39, C:0.19, G:0.31, T:0.11
Consensus pattern (87 bp):
AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
AAAGCAGATGCAGCAACGAGAG
Found at i:12547106 original size:21 final size:21
Alignment explanation
Indices: 12547082--12547121 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12547072 CAGATGCAGT
12547082 AGCGAGAGAAGCAGAGGCTGC
1 AGCGAGAGAAGCAGAGGCTGC
* *
12547103 AGCGAGGGAATCAGAGGCT
1 AGCGAGAGAAGCAGAGGCT
12547122 AAAATGAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.42, T:0.07
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGGCTGC
Found at i:12547140 original size:87 final size:87
Alignment explanation
Indices: 12546960--12547125 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 87
12546950 AAAAAGATAT
*
12546960 GAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGA
1 GAAGAACTCCAGCTACAACTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGA
* ** * *
12547025 AGCTGAGGTTCAACGAAAGTAT
66 AGCAGAGGTAAAACGAAAGGAA
* * * * *
12547047 GAAGAACTCCAGC-AGCAGCTTAAAGCAGATGCAGTAGCGAGAGAAGCAGAGGCTGCAGCGAGGG
1 GAAGAACTCCAGCTA-CAACTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAG
*
12547111 AATCAGAGGCTAAAA
65 AAGCAGAGG-TAAAA
12547126 TGAGGGAAGC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 1 0.01
87 63 0.94
88 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.31, T:0.11
Consensus pattern (87 bp):
GAAGAACTCCAGCTACAACTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGA
AGCAGAGGTAAAACGAAAGGAA
Found at i:12547589 original size:43 final size:42
Alignment explanation
Indices: 12547444--12547873 Score: 263
Period size: 43 Copynumber: 10.1 Consensus size: 42
12547434 CAAAATTAGC
* * * **
12547444 GGCGTTTCTTGGATAAGCGCCGCTAAAGAACCCCTTCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAG-ACCCAATCTATAGT
* ** * * * *
12547487 GGCGTTTTCTGTCCAAGTGCCACAAAAAACTCCAATCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGAC-CCAATCTATAGT
** *
12547530 GGCGTTTTTTCAATAAGCTCCGCGAAAGACGCCAATCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGAC-CCAATCTATAGT
** * * * * *
12547573 GGCGTTTCCTGTATAAGCGCCGCTAAAGAGCCATCTCTCTCGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGACCCA-ATCTATAGT
* * * * * * *
12547616 GGCATTTCTT-TATAAGCGCCGCTATAGACCCGAGCTATCGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGACCCAATCTATAGT
* ** * * * *
12547657 GGCATTTTTTGTATAAGTTCTGGGAAAG-CTGCTATCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGAC-CCAATCTATAGT
* * * * * *
12547699 GGCATTTTCTGTACAAACACCGGGAAAGATCCCAATCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGA-CCCAATCTATAGT
* ** * *
12547742 GGCATTTTTTGTATAAGCGCCGTTAGAGAACCCGATCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAG-ACCCAATCTATAGT
* * * *
12547785 GGCGTTTTTTGTATAAGCACCGAGAAAGACTCCCACCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGAC-CCAATCTATAGT
* * * *
12547828 GGCG-TTTTTGTGTAAGCGCCGCTAAAGACCGTAGTCTATAGT
1 GGCGTTTTTTGTATAAGCGCCGCGAAAGACC-CAATCTATAGT
12547870 GGCG
1 GGCG
12547874 CGGTAAAAGA
Statistics
Matches: 296, Mismatches: 82, Indels: 19
0.75 0.21 0.05
Matches are distributed among these distances:
41 17 0.06
42 99 0.33
43 178 0.60
44 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (42 bp):
GGCGTTTTTTGTATAAGCGCCGCGAAAGACCCAATCTATAGT
Found at i:12552166 original size:12 final size:12
Alignment explanation
Indices: 12552149--12552193 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
12552139 TCTTTTAATC
12552149 TTGTTATTATTA
1 TTGTTATTATTA
12552161 TTGTTATTATTA
1 TTGTTATTATTA
*
12552173 TTGTTATTGTTA
1 TTGTTATTATTA
12552185 TTGTTATTA
1 TTGTTATTA
12552194 GCTTTTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (12 bp):
TTGTTATTATTA
Found at i:12552167 original size:6 final size:6
Alignment explanation
Indices: 12552149--12552192 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
12552139 TCTTTTAATC
* *
12552149 TTGTTA TTATTA TTGTTA TTATTA TTGTTA TTGTTA TTGTTA TT
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TT
12552193 AGCTTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.68
Consensus pattern (6 bp):
TTGTTA
Found at i:12561020 original size:15 final size:15
Alignment explanation
Indices: 12561000--12561038 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
12560990 ATCGTTAAAA
12561000 TTATTATCATTGTAT
1 TTATTATCATTGTAT
12561015 TTATTA-CTATTGTAT
1 TTATTATC-ATTGTAT
*
12561030 TTGTTATCA
1 TTATTATCA
12561039 CAATATTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.59
Consensus pattern (15 bp):
TTATTATCATTGTAT
Found at i:12564773 original size:24 final size:24
Alignment explanation
Indices: 12564746--12564791 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
12564736 AGAACAGTCC
* *
12564746 CAAAAGGAAATGTAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
12564770 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
12564792 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.26, T:0.13
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:12573029 original size:44 final size:42
Alignment explanation
Indices: 12572970--12573697 Score: 337
Period size: 44 Copynumber: 16.8 Consensus size: 42
12572960 GATTGCATCT
*
12572970 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGA-TAAGTAAGGA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCA-GACTAAG-AAGCA
* *
12573014 AGTCTTATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCA
* * *
12573059 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGA-TTA-AAGCCGA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A
* * * * *
12573102 TAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAA-AATCA
1 -AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
* * * * *
12573145 CAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCT
1 -AG-TCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
* *
12573187 ATTCTTATCTCCTTGAAGTTGCAGTGGAGCA-AGGTAAGTAAGCA
1 AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGA-CTAAG-AAGCA
* ** *
12573231 AGTCTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGGTGAAA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CA
* *
12573276 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGTCGA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A
* * * * * *
12573319 TAATCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAA-AATCA
1 -AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
* * * * *
12573362 TAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCT
1 -AG-TCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
* * *
12573404 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAAACTAAGTAAACA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCA
*
12573448 AGTCTTATCCTCCTGAAGTTGCAGT-GAGACAGACTAAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGGAG-CAGACT-AAGA-AGCA
* * * * **
12573493 AATCTTATCTTCCTAAAGTTGCAGTGGTGCAGATTAAAGCCGACA
1 AGTCTTATC-TCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CA
* ** * * * *
12573538 A-TCCTATCTCTCTGAAGCAGCAGTGGAACGGATTAA-AATCA
1 AGTCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
** * * * *
12573579 CAGATCTTATCTCTCTGAAGTTGCA-AAGAGCAGA-T-CGCATCT
1 -AG-TCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
* * *
12573621 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGTAGGAA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCA
* *
12573665 AATCTTATCTTCCTGAAGTTGTAGTGGAGCAGA
1 AGTCTTATC-TCCTGAAGTTGCAGTGGAGCAGA
12573698 TTAAAGCCGA
Statistics
Matches: 529, Mismatches: 101, Indels: 108
0.72 0.14 0.15
Matches are distributed among these distances:
39 1 0.00
40 59 0.11
41 28 0.05
42 19 0.04
43 42 0.08
44 259 0.49
45 117 0.22
46 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (42 bp):
AGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
Found at i:12573036 original size:84 final size:82
Alignment explanation
Indices: 12572891--12573480 Score: 309
Period size: 84 Copynumber: 6.8 Consensus size: 82
12572881 CTGACAATCC
* * * * *
12572891 TATCTTCCTAAAGTTGCAGTGGAGC-GAATTAA-AATCACAGATCTTATCTCTCTGAAATTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGCA-AG-TCTTATCTC-CTGAAGTTGCAG
* *
12572954 AGAGCAGATTGCATCTAGTCT
62 GGAGCAGATTGAATCTAGTCT
* *
12572975 TATCTCCCTGAAGTTGCAGTGGAGCAGGA-TAAGTAAGGAAGTCTTATCCTCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCA-GACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTGCAGG
* * * *
12573039 GAGGTAGACTGAAGATGGCAAATCT
63 GA-GCAGATTG-A-AT--CTAGTCT
* * * * *
12573064 TATCTCCCTGAAGTTGCAATGGAGCAGA-TTA-AAGCCGATAATCCTATCTCCCTAAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCT-CCTGAAGTTGCAG
* *
12573127 TGGAGCAGATTAAAATCACAGATCT
62 -GGAGCAGATT-GAATC-TAG-TCT
* * * * * * *
12573152 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTATTCTTATCTCCTTGAAGTTGCAGTGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCC-TGAAGTTGCAG-GG
* * * *
12573214 AGCAAGGTAAGTAAGCAAGTCT
64 AGC-AGAT-TG-AATCTAGTCT
* ** * *
12573236 TATC-CTCCTGAAGTTGCAGTGAAGCAGACTGAAGGTGAAAAATCTTATCTCCCTGAAGTTGCAG
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAGTCTTATCT-CCTGAAGTTGCAG
* * *
12573300 TGGAGCAGATTAAAGTCGATAATCC
62 -GGAGCAGATTGAA-TC--TAGTCT
* * * * *
12573325 TATCTCCCTGAAGTTGCAGTGGAACGGATTAA-AATCATAGATCTTATCTCTCTGAAGTTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCTTATCTC-CTGAAGTTGCAGG
* *
12573389 GAGCAGATCGCATCTAGTCT
63 GAGCAGATTGAATCTAGTCT
* * * *
12573409 TATCTCCCTGAAGTTGCAATGGAGCAAACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTGCAGGG
12573474 AGACAGA
64 AG-CAGA
12573481 CTAAAGATGG
Statistics
Matches: 388, Mismatches: 77, Indels: 81
0.71 0.14 0.15
Matches are distributed among these distances:
83 3 0.01
84 140 0.36
85 32 0.08
86 22 0.06
87 24 0.06
88 55 0.14
89 107 0.28
90 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (82 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCAGGGAG
CAGATTGAATCTAGTCT
Found at i:12573206 original size:173 final size:173
Alignment explanation
Indices: 12573016--12573343 Score: 398
Period size: 173 Copynumber: 1.9 Consensus size: 173
12573006 AGTAAGGAAG
** *
12573016 TCTTATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATGGCAAATCTTAT-CTCCCTGAAGT
1 TCTTATCCTCCTGAAGTTGCAGTGGAGCAAG-CT-AAGTA-AGCAAATCTTATCCT-CCTGAAGT
* * *
12573078 TGCAATGGAGCAGATTAAAGCCG-ATAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA
62 TGCAATGAAGCAGACTAAAGCCGAAAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAA
* *
12573142 TC-ACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAT
127 TCGACA-ATCCTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAT
* *
12573189 TCTTAT-CTCCTTGAAGTTGCAGTGGAGCAAGGTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGC
1 TCTTATCCTCC-TGAAGTTGCAGTGGAGCAAGCTAAGTAAGCAAATCTTATCCTCCTGAAGTTGC
* * ** * * *
12573253 AGTGAAGCAGACTGAAGGTGAAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
65 AATGAAGCAGACTAAAGCCGAAAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCG
*
12573318 ATAATCCTATCTCCCTGAAGTTGCAG
130 ACAATCCTATCTCCCTGAAGTTGCAG
12573344 TGGAACGGAT
Statistics
Matches: 131, Mismatches: 18, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
172 42 0.32
173 82 0.63
174 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (173 bp):
TCTTATCCTCCTGAAGTTGCAGTGGAGCAAGCTAAGTAAGCAAATCTTATCCTCCTGAAGTTGCA
ATGAAGCAGACTAAAGCCGAAAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCGA
CAATCCTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAT
Found at i:12573267 original size:217 final size:216
Alignment explanation
Indices: 12572886--12573697 Score: 1203
Period size: 217 Copynumber: 3.7 Consensus size: 216
12572876 CGTAGCTGAC
* * * *
12572886 AATCCTATCTTCCTAAAGTTGCAGTGGAGCGAATTAAAATCACAGATCTTATCTCTCTGAAATTG
1 AATCCTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
* * * *
12572951 CAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAGTAAGGAAG
66 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCA-GCTAAGTAAGCAAG
* *
12573016 TCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
130 TCTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
*
12573081 AATGGAGCAGATTAAAGCCGAT
195 AGTGGAGCAGATTAAAGCCGAT
* *
12573103 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
* * * *
12573168 CAGAGAGCAGATCGCATCTATTCTTATCTCCTTGAAGTTGCAGTGGAGCAAGGTAAGTAAGCAAG
66 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGC-AGCTAAGTAAGCAAG
* **
12573233 TCTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGGTGAAAAATCTTATCTCCCTGAAGTTGC
130 TCTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
*
12573298 AGTGGAGCAGATTAAAGTCGAT
195 AGTGGAGCAGATTAAAGCCGAT
* *
12573320 AATCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATCATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
* *
12573385 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAAACTAAGTAAACAAG
66 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGC-AGCTAAGTAAGCAAG
* * *
12573450 TCTTATCCTCCTGAAGTTGCAGTG-AGACAGACTAAAGATGGCAAATCTTATCTTCCTAAAGTTG
130 TCTTATCCTCCTGAAGTTGCAGTGAAG-CAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
* *
12573514 CAGTGGTGCAGATTAAAGCCGAC
194 CAGTGGAGCAGATTAAAGCCGAT
* * **
12573537 AATCCTATCTCTCTGAAGCAGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
* * * *
12573602 CAAAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGTAGGAAAA
66 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAG-CTAAGTAAGCAAG
* * *
12573667 TCTTATCTTCCTGAAGTTGTAGTGGAGCAGA
130 TCTTATCCTCCTGAAGTTGCAGTGAAGCAGA
12573698 TTAAAGCCGA
Statistics
Matches: 544, Mismatches: 47, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
216 3 0.01
217 538 0.99
218 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (216 bp):
AATCCTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGCTAAGTAAGCAAGT
CTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAGCCGAT
Found at i:12575595 original size:15 final size:15
Alignment explanation
Indices: 12575575--12575613 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
12575565 ATCGTTAAAA
12575575 TTATTATCATTGTAT
1 TTATTATCATTGTAT
12575590 TTATTA-CTATTGTAT
1 TTATTATC-ATTGTAT
*
12575605 TTGTTATCA
1 TTATTATCA
12575614 CAATATTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.59
Consensus pattern (15 bp):
TTATTATCATTGTAT
Found at i:12589374 original size:50 final size:50
Alignment explanation
Indices: 12589311--12589692 Score: 557
Period size: 50 Copynumber: 7.6 Consensus size: 50
12589301 CAATGTCATA
* ** * * *
12589311 TCCCAGATATGGTCTTACATGGGAATTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
**
12589361 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
12589411 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
12589461 TCCCAGACATGGTATTACATGGGACCTCTCATCTCGGTGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * * *
12589511 TCCCAGACTTGATCTTACATGGGACCTCTCATCTCGGTGCCAACACCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
12589561 TCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCAACGTCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * * *
12589611 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGATGTCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
12589661 TCCTAGACATGGTCTTACATGAGACCTCTCAT
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT
12589693 AATTTCAATA
Statistics
Matches: 297, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 297 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:12589527 original size:150 final size:150
Alignment explanation
Indices: 12589249--12589692 Score: 593
Period size: 150 Copynumber: 3.0 Consensus size: 150
12589239 GAATATAACA
* * * ** * * * * * *
12589249 TGCCAAAGCTATGTCCCAAACATAGTCTTACATGGGATGTTTCCTGT-ACTGCCAATGTCATATC
1 TGCCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTC
* ** * *
12589313 CCAGATATGGTCTTACATGGGAATTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
**
12589378 CGGGGGACCTCTCATCTCGG
131 CATGGGACCTCTCATCTCGG
* *
12589398 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTC
* * *
12589463 CCAGACATGGTATTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACTTGATCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
12589528 CATGGGACCTCTCATCTCGG
131 CATGGGACCTCTCATCTCGG
* * * *
12589548 TGCCAACACCATATCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCAACGTCATGTC
1 TGCCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTC
* * * *
12589613 CCAAACATGGTCTTACATGGGACCTCTCATCTCGATGTCAATGCCATGTCCTAGACATGGTCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
*
12589678 CATGAGACCTCTCAT
131 CATGGGACCTCTCAT
12589693 AATTTCAATA
Statistics
Matches: 258, Mismatches: 36, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
149 38 0.15
150 220 0.85
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (150 bp):
TGCCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTC
CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
CATGGGACCTCTCATCTCGG
Found at i:12589800 original size:48 final size:48
Alignment explanation
Indices: 12589709--12589801 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 48
12589699 AATAATGCCA
* * * *
12589709 ATGCCATGTCTCAGACATGGTCTTACACTAGCTCACATATCGATGTAG
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACATCGATGTAG
* * * *
12589757 ATGCCATGTCCCAGACATGGTCTTATACGATATCGCACGTCGATG
1 ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACATCGATG
12589802 CCATATCCCA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAGATCACACATCGATGTAG
Found at i:12593106 original size:70 final size:70
Alignment explanation
Indices: 12593019--12593159 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
12593009 GATCACGAGC
*
12593019 TTTGATCCGCGACTCATGACATAAAGTGGCAGATCTAACCTTCCTTTAATATATAAGTATATAAA
1 TTTGATCCGCGACTCATGACATAAAGTGGAAGATCTAACCTTCCTTTAATATATAAGTATATAAA
12593084 TTATA
66 TTATA
12593089 TTTGATCCGCGACTCATGACATAAAGTGGAAGATCTAACCTTCCTTTAATATATAAGTATATAAA
1 TTTGATCCGCGACTCATGACATAAAGTGGAAGATCTAACCTTCCTTTAATATATAAGTATATAAA
12593154 TTATA
66 TTATA
12593159 T
1 T
12593160 ATATACTCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (70 bp):
TTTGATCCGCGACTCATGACATAAAGTGGAAGATCTAACCTTCCTTTAATATATAAGTATATAAA
TTATA
Found at i:12599203 original size:31 final size:31
Alignment explanation
Indices: 12599063--12599196 Score: 191
Period size: 31 Copynumber: 4.4 Consensus size: 31
12599053 ATGCAATGCT
12599063 CAAATC-AATTCGACAATATATATCCATATA
1 CAAATCAAATTCGACAATATATATCCATATA
* * **
12599093 CGAATCAAATTCGACAATGTATATCTTTATA
1 CAAATCAAATTCGACAATATATATCCATATA
12599124 CAAATCAAATTCGACAATGA-ATATCCATATA
1 CAAATCAAATTCGACAAT-ATATATCCATATA
* *
12599155 CAAATCAAATTCGGCAATATATATCTATATA
1 CAAATCAAATTCGACAATATATATCCATATA
12599186 CAAATCAAATT
1 CAAATCAAATT
12599197 GGGCAATGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
30 6 0.07
31 85 0.93
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.31
Consensus pattern (31 bp):
CAAATCAAATTCGACAATATATATCCATATA
Found at i:12599227 original size:62 final size:62
Alignment explanation
Indices: 12599063--12599219 Score: 183
Period size: 62 Copynumber: 2.5 Consensus size: 62
12599053 ATGCAATGCT
** * * *
12599063 CAAATC-AATTCGACAAT-ATATATCCATATACGAATCAAATTCGACAATGTATATCTTTATA
1 CAAATCAAATTCGACAATGA-ATAAACATATACAAATCAAATTCGACAATATATATCTATATA
** *
12599124 CAAATCAAATTCGACAATGAATATCCATATACAAATCAAATTCGGCAATATATATCTATATA
1 CAAATCAAATTCGACAATGAATAAACATATACAAATCAAATTCGACAATATATATCTATATA
* * *
12599186 CAAATCAAATTGGGCAATGTATAAAACATATACA
1 CAAATCAAATTCGACAATGAAT-AAACATATACA
12599220 TTTAAATTAA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
61 6 0.07
62 68 0.81
63 10 0.12
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (62 bp):
CAAATCAAATTCGACAATGAATAAACATATACAAATCAAATTCGACAATATATATCTATATA
Found at i:12599797 original size:10 final size:11
Alignment explanation
Indices: 12599782--12599810 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
12599772 CACAAAAACA
12599782 TAAAAATA-AT
1 TAAAAATAGAT
12599792 TAAAAATAGAT
1 TAAAAATAGAT
12599803 TAAAAATA
1 TAAAAATA
12599811 CATACCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAAAAATAGAT
Found at i:12604278 original size:16 final size:17
Alignment explanation
Indices: 12604244--12604369 Score: 58
Period size: 17 Copynumber: 6.7 Consensus size: 17
12604234 CCGATATAAT
* * *
12604244 AAATATATTTATTTTTT
1 AAATATTTTTAATTTTA
*
12604261 AAATGTTTTTAATTTTA
1 AAATATTTTTAATTTTA
*
12604278 AAATATTTTTAAAATACTTTTTTT
1 AAATATTTTT---A-A---TTTTA
12604302 AAAT-TTTTTAATTTTA
1 AAATATTTTTAATTTTA
*
12604318 AAATATTTTTAAAATACTTTTTTT
1 AAATATTTTT---A-A---TTTTA
12604342 AAAT-TTTTTAATTTTA
1 AAATATTTTTAATTTTA
12604358 AAATATTTTTAA
1 AAATATTTTTAA
12604370 AATACTTTTT
Statistics
Matches: 84, Mismatches: 9, Indels: 32
0.67 0.07 0.26
Matches are distributed among these distances:
16 16 0.19
17 34 0.40
19 2 0.02
20 4 0.05
21 2 0.02
23 10 0.12
24 16 0.19
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.60
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:12604287 original size:11 final size:11
Alignment explanation
Indices: 12604273--12604379 Score: 67
Period size: 11 Copynumber: 10.4 Consensus size: 11
12604263 ATGTTTTTAA
12604273 TTTTAAAATAT
1 TTTTAAAATAT
12604284 TTTTAAAATACTT
1 TTTTAAAATA--T
*
12604297 TTTTTAAAT-T
1 TTTTAAAATAT
12604307 TTTT---A-A-
1 TTTTAAAATAT
12604313 TTTTAAAATAT
1 TTTTAAAATAT
12604324 TTTTAAAATACTT
1 TTTTAAAATA--T
*
12604337 TTTTTAAAT-T
1 TTTTAAAATAT
12604347 TTTT---A-A-
1 TTTTAAAATAT
12604353 TTTTAAAATAT
1 TTTTAAAATAT
12604364 TTTTAAAATACT
1 TTTTAAAATA-T
12604376 TTTT
1 TTTT
12604380 TTAATTTTTA
Statistics
Matches: 77, Mismatches: 2, Indels: 33
0.69 0.02 0.29
Matches are distributed among these distances:
6 8 0.10
7 2 0.03
9 2 0.03
10 12 0.16
11 30 0.39
12 5 0.06
13 18 0.23
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:12604310 original size:40 final size:40
Alignment explanation
Indices: 12604255--12604388 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
12604245 AATATATTTA
12604255 TTTTTTAAATGTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTTAAAT-TTTTTAATTTTAAAATATTTTTAAAATACT
12604296 TTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATACT
12604336 TTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATACT
12604376 TTTTTT-AATTTTT
1 TTTTTTAAATTTTT
12604389 AAAATAAATT
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
39 7 0.08
40 76 0.82
41 10 0.11
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (40 bp):
TTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATACT
Found at i:12604400 original size:21 final size:21
Alignment explanation
Indices: 12604362--12604401 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12604352 ATTTTAAAAT
**
12604362 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
12604383 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
12604402 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:12604408 original size:22 final size:21
Alignment explanation
Indices: 12604361--12604419 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
12604351 AATTTTAAAA
* *
12604361 TATTTTTAAAAT-ACTTTTTT
1 TATTTTTAAAATAAATTTTTG
12604381 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAATAAATTTTT-G
12604404 TATTTATTAAAA-AAAT
1 TATTT-TTAAAATAAAT
12604420 GGGCCGGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 1 0.03
21 11 0.33
22 14 0.42
23 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:12605006 original size:13 final size:13
Alignment explanation
Indices: 12604988--12605013 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12604978 AGCTAATAGG
12604988 TTAAAAATATTAA
1 TTAAAAATATTAA
12605001 TTAAAAATATTAA
1 TTAAAAATATTAA
12605014 AAGTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAAAAATATTAA
Found at i:12620460 original size:25 final size:25
Alignment explanation
Indices: 12620432--12620526 Score: 100
Period size: 25 Copynumber: 3.8 Consensus size: 25
12620422 CCTGTAAACA
* *
12620432 GGAAGCTTTTCCGAGCCATATAATG
1 GGAAGCTCTTACGAGCCATATAATG
* ** **
12620457 GGAAGCTCATGTGAGCCATATAACA
1 GGAAGCTCTTACGAGCCATATAATG
* *
12620482 GGAAGCTCTTACGAGCCAAATATTG
1 GGAAGCTCTTACGAGCCATATAATG
*
12620507 GGAAGCTCATACGAGCCATA
1 GGAAGCTCTTACGAGCCATA
12620527 AACAGAAAGC
Statistics
Matches: 55, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (25 bp):
GGAAGCTCTTACGAGCCATATAATG
Found at i:12620509 original size:50 final size:49
Alignment explanation
Indices: 12620426--12620538 Score: 154
Period size: 50 Copynumber: 2.3 Consensus size: 49
12620416 TATAAGCCTG
* * * **
12620426 TAAACAGGAAGCTTTTCCGAGCCATATAATGGGAAGCTCATGTGAGCCA
1 TAAACAGGAAGCTCTTACGAGCCAAATAATGGGAAGCTCATACGAGCCA
*
12620475 TATAACAGGAAGCTCTTACGAGCCAAATATTGGGAAGCTCATACGAGCCA
1 TA-AACAGGAAGCTCTTACGAGCCAAATAATGGGAAGCTCATACGAGCCA
*
12620525 TAAACAGAAAGCTC
1 TAAACAGGAAGCTC
12620539 AATAGAGCCA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 13 0.23
50 43 0.77
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (49 bp):
TAAACAGGAAGCTCTTACGAGCCAAATAATGGGAAGCTCATACGAGCCA
Found at i:12620564 original size:25 final size:25
Alignment explanation
Indices: 12620426--12620564 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
12620416 TATAAGCCTG
** *
12620426 TAAACAGGAAGCT-TTTCCGAGCCA
1 TAAACAGGAAGCTCAATACGAGCCA
** **
12620450 TATAATGGGAAGCTC-ATGTGAGCCA
1 TA-AACAGGAAGCTCAATACGAGCCA
*
12620475 TATAACAGGAAGCTC-TTACGAGCCA
1 TA-AACAGGAAGCTCAATACGAGCCA
**
12620500 -AATATTGGGAAGCTC-ATACGAGCCA
1 TAA-A-CAGGAAGCTCAATACGAGCCA
*
12620525 TAAACAGAAAGCTCAATA-GAGCCA
1 TAAACAGGAAGCTCAATACGAGCCA
*
12620549 TTAATCAGGAAGCTCA
1 -TAAACAGGAAGCTCA
12620565 TGAGAGTCAA
Statistics
Matches: 90, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
23 1 0.01
24 17 0.19
25 70 0.78
26 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (25 bp):
TAAACAGGAAGCTCAATACGAGCCA
Found at i:12625004 original size:18 final size:20
Alignment explanation
Indices: 12624967--12625004 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
12624957 TTACACATAC
12624967 AAAAAAATTATAATTATAAT
1 AAAAAAATTATAATTATAAT
12624987 AAAAAAATTA-AATT-TAAT
1 AAAAAAATTATAATTATAAT
12625005 GTTATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAAAATTATAATTATAAT
Done.