Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 47 of 196
Found at i:12936426 original size:21 final size:22
Alignment explanation
Indices: 12936310--12936427 Score: 71
Period size: 22 Copynumber: 5.4 Consensus size: 22
12936300 TATGAAAGCC
* * *
12936310 CTTTATGGGACGTATGAGAGCC
1 CTTTATGGGACATATAAGAGCT
* ***
12936332 CTTAATGGGATGCATAAGAGC-
1 CTTTATGGGACATATAAGAGCT
* * *
12936353 CTTTTATGAGACATATGAA-AACC
1 C-TTTATGGGACATAT-AAGAGCT
* * *
12936376 CTTTCTAGGACGTATAAGAGCT
1 CTTTATGGGACATATAAGAGCT
*
12936398 CTTTATGGGACATATTAGAGCT
1 CTTTATGGGACATATAAGAGCT
12936420 C-TTATGGG
1 CTTTATGGG
12936428 TGGCAAAGGA
Statistics
Matches: 72, Mismatches: 20, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
21 10 0.14
22 59 0.82
23 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (22 bp):
CTTTATGGGACATATAAGAGCT
Found at i:12936854 original size:48 final size:48
Alignment explanation
Indices: 12936783--12936881 Score: 171
Period size: 48 Copynumber: 2.1 Consensus size: 48
12936773 ATTTCATATG
*
12936783 TATGATTCCGCAAACAGGGGATTAGCTCTTAGAAATTCGCCTAGATGT
1 TATGATTCCGCAAACAGGAGATTAGCTCTTAGAAATTCGCCTAGATGT
* *
12936831 TATGATTCCGCAAATAGGAGATTAGCTCTTAGGAATTCGCCTAGATGT
1 TATGATTCCGCAAACAGGAGATTAGCTCTTAGAAATTCGCCTAGATGT
12936879 TAT
1 TAT
12936882 CTATTTCTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (48 bp):
TATGATTCCGCAAACAGGAGATTAGCTCTTAGAAATTCGCCTAGATGT
Found at i:12941371 original size:33 final size:36
Alignment explanation
Indices: 12941316--12941383 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
12941306 ATTCTACAAT
* *
12941316 TTTTAATTATGTCTTGATCATTAAGTG-TTTGCATC
1 TTTTAATTATGACATGATCATTAAGTGTTTTGCATC
*
12941351 TTTTAATTATGACAT-A-CATTATGTGTTTTGCAT
1 TTTTAATTATGACATGATCATTAAGTGTTTTGCAT
12941384 TAAATAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 8 0.28
34 8 0.28
35 13 0.45
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.51
Consensus pattern (36 bp):
TTTTAATTATGACATGATCATTAAGTGTTTTGCATC
Found at i:12941514 original size:50 final size:50
Alignment explanation
Indices: 12941381--12941514 Score: 130
Period size: 50 Copynumber: 2.7 Consensus size: 50
12941371 ATGTGTTTTG
* * * ** *
12941381 CATTAAATAAAGTTATGCATTATGTAACTCTCATGTTAGTTAAGTTTGTAT
1 CATTAAATTAAGTCATGTATTATGTAAC-CTCATGTTAGTTAAACTTGCAT
* *
12941432 CA-TAAATTATGACATGCT-TTATGTAACTCTCATGTTAGTTAAAACTTGCAT
1 CATTAAATTAAGTCATG-TATTATGTAAC-CTCATGTTAGTT-AAACTTGCAT
*
12941483 CATTAAATTAAGTCATGTATTAAGTAA-CTCAT
1 CATTAAATTAAGTCATGTATTATGTAACCTCAT
12941515 TTGTTCATTT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
50 37 0.54
51 12 0.18
52 19 0.28
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (50 bp):
CATTAAATTAAGTCATGTATTATGTAACCTCATGTTAGTTAAACTTGCAT
Found at i:12947943 original size:33 final size:30
Alignment explanation
Indices: 12947906--12947969 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 30
12947896 TGATAATGAG
12947906 AGAAAA-TGAGAGAAAACTAAAAGAAATTGAAGA
1 AGAAAATTGAGA-AAAA--AAAAGAAATT-AAGA
*
12947939 AGAAAATTGAGAAAAAAAAAGGAATTAAGA
1 AGAAAATTGAGAAAAAAAAAGAAATTAAGA
12947969 A
1 A
12947970 AAGAGAGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 5 0.17
31 9 0.31
33 10 0.34
34 5 0.17
ACGTcount: A:0.66, C:0.02, G:0.20, T:0.12
Consensus pattern (30 bp):
AGAAAATTGAGAAAAAAAAAGAAATTAAGA
Found at i:12947977 original size:27 final size:29
Alignment explanation
Indices: 12947906--12947978 Score: 69
Period size: 31 Copynumber: 2.4 Consensus size: 29
12947896 TGATAATGAG
*
12947906 AGAAAATGAGAGAAAACTAAAAGAAATTGA
1 AGAAAA-GAGAGAAAACAAAAAGAAATTGA
* *
12947936 AGAAGAAAATTGAGAAAA-AAAAAGGAATT-A
1 AGAA-AAGA--GAGAAAACAAAAAGAAATTGA
12947966 AGAAAAGAGAGAA
1 AGAAAAGAGAGAA
12947979 GAATTTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
27 5 0.14
29 3 0.08
30 10 0.28
31 11 0.31
32 7 0.19
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (29 bp):
AGAAAAGAGAGAAAACAAAAAGAAATTGA
Found at i:12948048 original size:22 final size:21
Alignment explanation
Indices: 12948020--12948063 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
12948010 TAAAGGAGAT
12948020 TGAGAGAAGAAAAAAAAAGAAA
1 TGAGAGAA-AAAAAAAAAGAAA
* *
12948042 TGAGAGAAAAAGAAAAGGAAA
1 TGAGAGAAAAAAAAAAAGAAA
12948063 T
1 T
12948064 AAAAAGTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (21 bp):
TGAGAGAAAAAAAAAAAGAAA
Found at i:12956736 original size:88 final size:88
Alignment explanation
Indices: 12956632--12956805 Score: 348
Period size: 88 Copynumber: 2.0 Consensus size: 88
12956622 ATAGTAGTTC
12956632 AAATCAAAACAAATCATTCTTTGATATTTAAATTCATAAAATCTGTCACCAATATCGCATTTACA
1 AAATCAAAACAAATCATTCTTTGATATTTAAATTCATAAAATCTGTCACCAATATCGCATTTACA
12956697 AAATATGCGTTTCATACATATTA
66 AAATATGCGTTTCATACATATTA
12956720 AAATCAAAACAAATCATTCTTTGATATTTAAATTCATAAAATCTGTCACCAATATCGCATTTACA
1 AAATCAAAACAAATCATTCTTTGATATTTAAATTCATAAAATCTGTCACCAATATCGCATTTACA
12956785 AAATATGCGTTTCATACATAT
66 AAATATGCGTTTCATACATAT
12956806 AACTATAAAC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.35
Consensus pattern (88 bp):
AAATCAAAACAAATCATTCTTTGATATTTAAATTCATAAAATCTGTCACCAATATCGCATTTACA
AAATATGCGTTTCATACATATTA
Found at i:12969755 original size:29 final size:31
Alignment explanation
Indices: 12969714--12969775 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 31
12969704 TAAATCTCTT
12969714 CACTTTCCTCCCAAAACTTTTACTCCC-TCC
1 CACTTTCCTCCCAAAACTTTTACTCCCTTCC
* *
12969744 CACTTTCC-CCCATAACTTTTGCTCCCTTCC
1 CACTTTCCTCCCAAAACTTTTACTCCCTTCC
12969774 CA
1 CA
12969776 TCCTACCCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.18, C:0.47, G:0.02, T:0.34
Consensus pattern (31 bp):
CACTTTCCTCCCAAAACTTTTACTCCCTTCC
Found at i:12971595 original size:24 final size:26
Alignment explanation
Indices: 12971550--12971603 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
12971540 CAAAAGCAAA
*
12971550 TAAAAAAATGAAATAAACCTAAAGCC
1 TAAAAAAATGAAATAAACCTAAAGAC
12971576 TAAAAAAA-GAGAA-AAA-CTAAAGAC
1 TAAAAAAATGA-AATAAACCTAAAGAC
12971600 TAAA
1 TAAA
12971604 TCTAAGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 11 0.42
25 5 0.19
26 10 0.38
ACGTcount: A:0.67, C:0.11, G:0.09, T:0.13
Consensus pattern (26 bp):
TAAAAAAATGAAATAAACCTAAAGAC
Found at i:12976018 original size:27 final size:27
Alignment explanation
Indices: 12975973--12976027 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
12975963 CTTAGTTTAG
*
12975973 TTTAGGTTTCTTAGGTTTCTCTTCATCT
1 TTTAGGGTTCTTAGGTTTCTCTTC-TCT
*
12976001 TTTAGGGTT-TTAGTTTTCTCTTCTCT
1 TTTAGGGTTCTTAGGTTTCTCTTCTCT
12976027 T
1 T
12976028 CTCCTTAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 13 0.52
28 8 0.32
ACGTcount: A:0.09, C:0.16, G:0.15, T:0.60
Consensus pattern (27 bp):
TTTAGGGTTCTTAGGTTTCTCTTCTCT
Found at i:13002699 original size:5 final size:5
Alignment explanation
Indices: 13002689--13002736 Score: 71
Period size: 5 Copynumber: 9.6 Consensus size: 5
13002679 CATAATTCTT
*
13002689 TTTTA TTTTA TTTTA TTTTA TTTTA TATTT- GTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTT
13002737 ATCAACTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 3 0.08
5 33 0.85
6 3 0.08
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:13010963 original size:21 final size:20
Alignment explanation
Indices: 13010913--13010954 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
13010903 TTAAAAATTG
13010913 TTCATATAATATACATATTT
1 TTCATATAATATACATATTT
13010933 TTCATATAATATA-ACTATTT
1 TTCATATAATATACA-TATTT
13010953 TT
1 TT
13010955 TCAGATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (20 bp):
TTCATATAATATACATATTT
Found at i:13019396 original size:11 final size:11
Alignment explanation
Indices: 13019360--13019526 Score: 52
Period size: 11 Copynumber: 15.2 Consensus size: 11
13019350 TTTTTTTTAA
13019360 TTTTAAAATATT
1 TTTTAAAAT-TT
* *
13019372 TTTT-ACATACT
1 TTTTAAAAT-TT
13019383 TTTT-AAATTT
1 TTTTAAAATTT
13019393 TTTTAAAA--T
1 TTTTAAAATTT
*
13019402 TTTT-AAATAT
1 TTTTAAAATTT
13019412 TTTTAAAATACTT
1 TTTTAAAAT--TT
*
13019425 TTTT-TAA---
1 TTTTAAAATTT
*
13019432 TTTTAAAATAAT
1 TTTTAAAAT-TT
*
13019444 TTTAAAATACTTT
1 TTTTAAA-A-TTT
**
13019457 TTTTAATTTTT
1 TTTTAAAATTT
*
13019468 TAATTTTAAAATAT
1 T--T-TTAAAATTT
*
13019482 TTTTAAAATAT
1 TTTTAAAATTT
13019493 TTTTAAAATACTT
1 TTTTAAAAT--TT
13019506 TTTT--AA-TT
1 TTTTAAAATTT
13019514 TTTTAAAATTT
1 TTTTAAAATTT
13019525 TT
1 TT
13019527 AAAATAAAAA
Statistics
Matches: 118, Mismatches: 16, Indels: 43
0.67 0.09 0.24
Matches are distributed among these distances:
7 4 0.03
8 11 0.09
9 5 0.04
10 12 0.10
11 47 0.40
12 13 0.11
13 18 0.15
14 8 0.07
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:13019495 original size:28 final size:28
Alignment explanation
Indices: 13019440--13019498 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
13019430 AATTTTAAAA
**
13019440 TAATTTTAAAATACTTTTTTTAATTTTT
1 TAATTTTAAAATACTTTTTAAAATTTTT
13019468 TAATTTTAAAATA-TTTTTAAAATATTTT
1 TAATTTTAAAATACTTTTTAAAAT-TTTT
13019496 TAA
1 TAA
13019499 AATACTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (28 bp):
TAATTTTAAAATACTTTTTAAAATTTTT
Found at i:13019525 original size:8 final size:9
Alignment explanation
Indices: 13019382--13019531 Score: 61
Period size: 9 Copynumber: 15.1 Consensus size: 9
13019372 TTTTACATAC
*
13019382 TTTTTAAATT
1 TTTTTAAA-A
13019392 TTTTTAAAA
1 TTTTTAAAA
13019401 TTTTTAAATA
1 TTTTTAAA-A
13019411 TTTTTAAAATA
1 TTTTT-AAA-A
**
13019422 CTTTTTTTAA
1 -TTTTTAAAA
13019432 -TTTTAAAA
1 TTTTTAAAA
13019440 TAATTTTAAAATA
1 T--TTTT-AAA-A
**
13019453 CTTTTTTTAA
1 -TTTTTAAAA
*
13019463 TTTTT-TAA
1 TTTTTAAAA
*
13019471 TTTTAAAATA
1 TTTTTAAA-A
13019481 TTTTTAAAATA
1 TTTTT-AAA-A
13019492 TTTTTAAAATA
1 TTTTT-AAA-A
* *
13019503 CTTTTTTAAT
1 -TTTTTAAAA
13019513 TTTTTAAAA
1 TTTTTAAAA
13019522 TTTTTAAAA
1 TTTTTAAAA
13019531 T
1 T
13019532 AAAAATGGGC
Statistics
Matches: 113, Mismatches: 14, Indels: 27
0.73 0.09 0.18
Matches are distributed among these distances:
8 13 0.12
9 31 0.27
10 21 0.19
11 29 0.26
12 17 0.15
13 1 0.01
14 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:13019530 original size:41 final size:40
Alignment explanation
Indices: 13019360--13019532 Score: 185
Period size: 41 Copynumber: 4.2 Consensus size: 40
13019350 TTTTTTTTAA
* * *
13019360 TTTTAAAATATTTTTTACATACTTTTTAAATTTTTTTAAAAT
1 TTTTAAAATATTTTTAAAATACTTTTTTAA--TTTTTAAAAT
13019402 TTTT-AAATATTTTTAAAATACTTTTTTTAA-TTTTAAAAT
1 TTTTAAAATATTTTTAAAATAC-TTTTTTAATTTTTAAAAT
* * *
13019441 AATTTTAAAATACTTTTT---TTAATTTTTTAATTTTAAAATAT
1 --TTTTAAAATA-TTTTTAAAATACTTTTTTAATTTTTAAA-AT
13019482 TTTTAAAATATTTTTAAAATACTTTTTTAATTTTTTAAAAT
1 TTTTAAAATATTTTTAAAATACTTTTTTAA-TTTTTAAAAT
13019523 TTTTAAAATA
1 TTTTAAAATA
13019533 AAAATGGGCC
Statistics
Matches: 111, Mismatches: 9, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
38 5 0.05
39 27 0.24
40 8 0.07
41 43 0.39
42 23 0.21
43 5 0.05
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (40 bp):
TTTTAAAATATTTTTAAAATACTTTTTTAATTTTTAAAAT
Found at i:13020777 original size:58 final size:57
Alignment explanation
Indices: 13020668--13020802 Score: 171
Period size: 58 Copynumber: 2.3 Consensus size: 57
13020658 TTTAATTCAT
* * *
13020668 ATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATATGATTAAATTATATATTATTTTATGAAATTATATTTA
* * * * *
13020726 ATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATGCAATTATTTTTA
1 ATAATAATTATATTAAAATATGATTAAATTATATATTA-TTTTATGAAATTATATTTA
*
13020784 ATAATAATTTTATTAAAAT
1 ATAATAATTATATTAAAAT
13020803 TTAATAACAA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
57 18 0.27
58 48 0.73
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.53
Consensus pattern (57 bp):
ATAATAATTATATTAAAATATGATTAAATTATATATTATTTTATGAAATTATATTTA
Found at i:13023498 original size:19 final size:19
Alignment explanation
Indices: 13023458--13023499 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
13023448 ATTTTAAAAC
* *
13023458 AAAATTGAATTTAGTTTTA
1 AAAATTCAATTTAGTTTAA
13023477 AAAATTCAATTTTA-TTTAA
1 AAAATTCAA-TTTAGTTTAA
13023496 AAAA
1 AAAA
13023500 CAATTTCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (19 bp):
AAAATTCAATTTAGTTTAA
Found at i:13024774 original size:22 final size:23
Alignment explanation
Indices: 13024748--13024808 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
13024738 GGCCCATATT
**
13024748 AAATATATATTTAATAT-CTATA
1 AAATATATATTTAATATAAAATA
*
13024770 AAATATATATTTGAT-TAAAATA
1 AAATATATATTTAATATAAAATA
13024792 AAA-ATATATTTAATATA
1 AAATATATATTTAATATA
13024809 TAATTCGAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.33
22 22 0.67
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATATATATTTAATATAAAATA
Found at i:13031329 original size:40 final size:41
Alignment explanation
Indices: 13031255--13031373 Score: 132
Period size: 40 Copynumber: 2.9 Consensus size: 41
13031245 CTTGCTATCA
* ** * *
13031255 ATGAGCTTTAACCATTCACCCAAAAAATGATGCTCCTACGT
1 ATGAGCTTAAACTGTTCACCCAAAATATGATGCTCCTACGC
* * * *
13031296 ATGAGCTTAAATTGTTCA-CCAAAATATGGTGCTCTTAGGC
1 ATGAGCTTAAACTGTTCACCCAAAATATGATGCTCCTACGC
* *
13031336 ATGAGCTTAAACTGATCATCCAAAATATGATGCTCCTA
1 ATGAGCTTAAACTGTTCACCCAAAATATGATGCTCCTA
13031374 AGCACGAGAT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 33 0.52
41 31 0.48
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (41 bp):
ATGAGCTTAAACTGTTCACCCAAAATATGATGCTCCTACGC
Found at i:13031397 original size:41 final size:41
Alignment explanation
Indices: 13031314--13031401 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
13031304 AAATTGTTCA
* * * * * * *
13031314 CCAAAATATGGTGCTCTTAGGCATGAGCTTAAACTGATCAT
1 CCAAAATATGATGCTCCTAAGCACGAGATTAAACTAAACAT
*
13031355 CCAAAATATGATGCTCCTAAGCACGAGATTAAGCTAAACAT
1 CCAAAATATGATGCTCCTAAGCACGAGATTAAACTAAACAT
13031396 CCAAAA
1 CCAAAA
13031402 ACATTTTGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (41 bp):
CCAAAATATGATGCTCCTAAGCACGAGATTAAACTAAACAT
Found at i:13032693 original size:17 final size:17
Alignment explanation
Indices: 13032673--13032705 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13032663 AAATTAAACT
13032673 AAAAAGAAAAAAGAAAA
1 AAAAAGAAAAAAGAAAA
*
13032690 AAAAAGAAAAGAGAAA
1 AAAAAGAAAAAAGAAA
13032706 CAAAGGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAGAAAA
Found at i:13035848 original size:49 final size:49
Alignment explanation
Indices: 13035778--13035877 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
13035768 TCTGAAAATC
13035778 TTTTATTTTTTTAGATAAGTTATAAAATAAAATATATATTTAAATGATA
1 TTTTATTTTTTTAGATAAGTTATAAAATAAAATATATATTTAAATGATA
13035827 TTTTATTTTTTTAGATAAGTTATAAAATAAAATATATATTTAAATGATA
1 TTTTATTTTTTTAGATAAGTTATAAAATAAAATATATATTTAAATGATA
13035876 TT
1 TT
13035878 CAAATTCATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (49 bp):
TTTTATTTTTTTAGATAAGTTATAAAATAAAATATATATTTAAATGATA
Found at i:13037154 original size:18 final size:19
Alignment explanation
Indices: 13037133--13037169 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13037123 TCTCTCAACC
13037133 TGGG-TTTTACAAGAAAAA
1 TGGGCTTTTACAAGAAAAA
*
13037151 TGGGCTTTTATAAGAAAAA
1 TGGGCTTTTACAAGAAAAA
13037170 AAATTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (19 bp):
TGGGCTTTTACAAGAAAAA
Found at i:13038059 original size:37 final size:37
Alignment explanation
Indices: 13038018--13038170 Score: 279
Period size: 37 Copynumber: 4.1 Consensus size: 37
13038008 CTCAACTTAA
*
13038018 GTTAATCTATGTCAAGAATGAGCTTGATAGTTCAATG
1 GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
*
13038055 GTTAATCTATGTCAAGAATGAGCTGGCTAGTTCAATG
1 GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
*
13038092 GTTAATCTATGTCAAGAATGAGCTTGTTAGTTCAATG
1 GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
13038129 GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
1 GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
13038166 GTTAA
1 GTTAA
13038171 GCTTCTGTAT
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 111 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (37 bp):
GTTAATCTATGTCAAGAATGAGCTTGCTAGTTCAATG
Found at i:13042487 original size:17 final size:19
Alignment explanation
Indices: 13042467--13042511 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
13042457 AATAACTAAG
13042467 ATAAATAAA-A-TAGAACA
1 ATAAATAAAGATTAGAACA
13042484 ATAAATCAAAGATTAGAACA
1 ATAAAT-AAAGATTAGAACA
*
13042504 AGAAATAA
1 ATAAATAA
13042512 GAAAATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.25
18 3 0.12
19 3 0.12
20 12 0.50
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.18
Consensus pattern (19 bp):
ATAAATAAAGATTAGAACA
Found at i:13045739 original size:50 final size:50
Alignment explanation
Indices: 13045633--13045874 Score: 236
Period size: 50 Copynumber: 4.7 Consensus size: 50
13045623 GGTAAATAGA
*
13045633 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A-G--ATGAGAGG
* *
13045689 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
* * * **
13045739 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
* * * * ** * **
13045789 TCCCATGTAAGACCATATCTGAGATATGACATTGGCAGTATA-A-GAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AGATGAGAGG
* *
13045838 TCACATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13045875 TTTTATTATC
Statistics
Matches: 158, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 34 0.22
50 84 0.53
51 1 0.01
52 1 0.01
53 1 0.01
56 37 0.23
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
Found at i:13047819 original size:17 final size:17
Alignment explanation
Indices: 13047797--13047829 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13047787 ATTAGGAAAT
13047797 AGAACAAACA-AGAAAAG
1 AGAAC-AACAGAGAAAAG
13047814 AGAACAACAGAGAAAA
1 AGAACAACAGAGAAAA
13047830 AAGTGGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.12, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAACAACAGAGAAAAG
Found at i:13053402 original size:75 final size:75
Alignment explanation
Indices: 13053173--13053409 Score: 252
Period size: 75 Copynumber: 3.2 Consensus size: 75
13053163 CGCGAAAGAG
* **
13053173 TTTGCACCCAGCGCTAGTCGGATAAATCGAAAAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
1 TTTGCACCCAGCGCTAGTCGGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
* **
13053238 ACCAACAGTA
66 ACTAATGGTA
* * * * * * **
13053248 TTTGCGCCCAACGCTAGTCAGATAAACCGACG----AA-T-GTGTGCCCAACACTAGTCAGATAA
1 TTTGCACCCAGCGCTAGTCGGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
**
13053307 ACTAATGAAA
66 ACTAATGGTA
*
13053317 GTTGCACCCAGCGCTAGTCGGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
1 TTTGCACCCAGCGCTAGTCGGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
*
13053382 ATTAATGGTA
66 ACTAATGGTA
* *
13053392 TTTGCGCCCAGCGGTAGT
1 TTTGCACCCAGCGCTAGT
13053410 TGAAAGAATC
Statistics
Matches: 125, Mismatches: 31, Indels: 12
0.74 0.18 0.07
Matches are distributed among these distances:
69 52 0.42
70 1 0.01
71 2 0.02
73 2 0.02
74 1 0.01
75 67 0.54
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (75 bp):
TTTGCACCCAGCGCTAGTCGGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAA
ACTAATGGTA
Found at i:13064032 original size:97 final size:97
Alignment explanation
Indices: 13063842--13064105 Score: 483
Period size: 97 Copynumber: 2.7 Consensus size: 97
13063832 CAACTCTTAA
*
13063842 AACCGAATGTATATTCACTATAAACATGAATAGCCGAATGCATATATACATATATGCTTAACAAA
1 AACCGAATGTATATTTACTATAAACATGAATAGCCGAATGCATATATAC--ATATGCTTAACAAA
13063907 TATTAGCTCCAAATGTATATACACTTTGAACATG
64 TATTAGCTCCAAATGTATATACACTTTGAACATG
* *
13063941 AATCGAATGTATATTTACTATAAACATGAATAGCTGAATGCATATATACATATGCTTAACAAATA
1 AACCGAATGTATATTTACTATAAACATGAATAGCCGAATGCATATATACATATGCTTAACAAATA
13064006 TTAGCTCCAAATGTATATACACTTTGAACATG
66 TTAGCTCCAAATGTATATACACTTTGAACATG
13064038 AACCGAATGTATATTTACTATAAACATGAATAGCCGAATGCATATATACATATGCTTAACAAATA
1 AACCGAATGTATATTTACTATAAACATGAATAGCCGAATGCATATATACATATGCTTAACAAATA
13064103 TTA
66 TTA
13064106 CAACCAATTG
Statistics
Matches: 160, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
97 114 0.71
99 46 0.29
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (97 bp):
AACCGAATGTATATTTACTATAAACATGAATAGCCGAATGCATATATACATATGCTTAACAAATA
TTAGCTCCAAATGTATATACACTTTGAACATG
Found at i:13064670 original size:41 final size:41
Alignment explanation
Indices: 13064567--13064670 Score: 172
Period size: 41 Copynumber: 2.5 Consensus size: 41
13064557 ATCGGCAATT
* * *
13064567 AGCCTGCTAGACGTAAAGTCTAAAATATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
13064608 AGCCAGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
13064649 AGCCTGCTAGACGTAAAGTCTG
1 AGCCTGCTAGACGTAAAGTCTG
13064671 GATCATCTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:13067545 original size:22 final size:22
Alignment explanation
Indices: 13067502--13067565 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 22
13067492 TTCTATACTA
13067502 AAACTATAAAACTTAATATAAT
1 AAACTATAAAACTTAATATAAT
*
13067524 AAACTTTAAAACGTTATGTAATATAAT
1 AAACTATAAAAC----T-TAATATAAT
13067551 AAAACTATAAAACTT
1 -AAACTATAAAACTT
13067566 GACTTAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
22 11 0.32
23 1 0.03
24 1 0.03
26 1 0.03
27 9 0.26
28 11 0.32
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (22 bp):
AAACTATAAAACTTAATATAAT
Found at i:13067573 original size:28 final size:28
Alignment explanation
Indices: 13067512--13067582 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
13067502 AAACTATAAA
*
13067512 ACTTAATATAAT-AAACTTTAAAACGTT
1 ACTTAATATAATAAAACTATAAAACGTT
13067539 A-TGTAATATAATAAAACTATAAAAC-TT
1 ACT-TAATATAATAAAACTATAAAACGTT
13067566 GACTTAATATAATAAAA
1 -ACTTAATATAATAAAA
13067583 GTTTACGTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 1 0.03
27 12 0.31
28 25 0.64
29 1 0.03
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (28 bp):
ACTTAATATAATAAAACTATAAAACGTT
Found at i:13086311 original size:54 final size:54
Alignment explanation
Indices: 13086180--13086313 Score: 198
Period size: 54 Copynumber: 2.5 Consensus size: 54
13086170 GAAATAATTC
* * *
13086180 CACATGGCTGTGTCGCAGGCCGTATGCTAGACCGTGTTCAATTCGATGTTGGGT
1 CACATGGCTGTGTCGCAGGCCGTGTGCTAGACCCTATTCAATTCGATGTTGGGT
*
13086234 CACATGGCCGTGTCGCAGGCCGTGTGCTAGACCCTATTCAATTCGATGTTGGGT
1 CACATGGCTGTGTCGCAGGCCGTGTGCTAGACCCTATTCAATTCGATGTTGGGT
* *
13086288 TACATGGCTGTGT-GCCAGACCGTGTG
1 CACATGGCTGTGTCG-CAGGCCGTGTG
13086314 AAACCTACAC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 71 0.99
ACGTcount: A:0.16, C:0.24, G:0.31, T:0.28
Consensus pattern (54 bp):
CACATGGCTGTGTCGCAGGCCGTGTGCTAGACCCTATTCAATTCGATGTTGGGT
Found at i:13086960 original size:48 final size:48
Alignment explanation
Indices: 13086895--13086988 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
13086885 ACCATACTCA
* *
13086895 TCCAAACTTACCATTTCTTGCTTAGACTCAGGATGAAACTTGCATACT
1 TCCAAACTTACCATTTCTTGCTTAAACTCAAGATGAAACTTGCATACT
* *
13086943 TCCAAACTTACCATTTCTTTCTTAAACTCAAGATTAAACTTGCATA
1 TCCAAACTTACCATTTCTTGCTTAAACTCAAGATGAAACTTGCATA
13086989 GTTCACTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (48 bp):
TCCAAACTTACCATTTCTTGCTTAAACTCAAGATGAAACTTGCATACT
Found at i:13089036 original size:13 final size:15
Alignment explanation
Indices: 13088987--13089033 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
13088977 GACTCTGTAA
13088987 ATATTTAATAAAAAT
1 ATATTTAATAAAAAT
13089002 ATATTTAATAAAAAT
1 ATATTTAATAAAAAT
13089017 ATATTTAATAAAAAT
1 ATATTTAATAAAAAT
13089032 AT
1 AT
13089034 TTACTGCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATTTAATAAAAAT
Found at i:13091394 original size:43 final size:42
Alignment explanation
Indices: 13091258--13091397 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 42
13091248 ATGTGATATT
* * *
13091258 GTGTAAGACCACGTCTGGGAC-GTTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACCATGTCTGGAACAG-TGGCATCGTATAT--GA-TTAC
* * * *
13091302 GTGTAAGACCATGTTTGGGACATTGGCGTCGTATATGATTAC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGTATATGATTAC
* *
13091344 GTGTAAGACCCTGTCTGGAACAGTGGCATCGTTATTTGATTAC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCG-TATATGATTAC
*
13091387 ATGTAAGACCA
1 GTGTAAGACCA
13091398 CATTTGAGAC
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.38
43 21 0.26
44 26 0.32
45 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGAACAGTGGCATCGTATATGATTAC
Found at i:13091414 original size:43 final size:42
Alignment explanation
Indices: 13091258--13091415 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
13091248 ATGTGATATT
*
13091258 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACCACGTTTGGGACGTTGGCATCGTATTT--GA-TTAC
* * * *
13091302 GTGTAAGACCATGTTTGGGACATTGGCGTCGTATATGATTAC
1 GTGTAAGACCACGTTTGGGACGTTGGCATCGTATTTGATTAC
* *
13091344 GTGTAAGACC-CTGTCTGGAACAG-TGGCATCGTTATTTGATTAC
1 GTGTAAGACCAC-GTTTGGGAC-GTTGGCATCG-TATTTGATTAC
* * *
13091387 ATGTAAGACCACATTTGAGACGTTGGCAT
1 GTGTAAGACCACGTTTGGGACGTTGGCAT
13091416 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 29 0.32
43 32 0.35
44 28 0.30
45 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTTTGGGACGTTGGCATCGTATTTGATTAC
Found at i:13094366 original size:9 final size:9
Alignment explanation
Indices: 13094337--13094373 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13094327 TGAGTTTTCG
13094337 AATTCGAAT
1 AATTCGAAT
*
13094346 AACTCGAAT
1 AATTCGAAT
13094355 AATTCGAAT
1 AATTCGAAT
*
13094364 AATTCAAAT
1 AATTCGAAT
13094373 A
1 A
13094374 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13094894 original size:17 final size:16
Alignment explanation
Indices: 13094872--13094916 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
13094862 TTATATCTAC
13094872 TATTTATATTATTGAA
1 TATTTATATTATTGAA
13094888 TTATTTAGTCA-TATTGAA
1 -TATTTA-T-ATTATTGAA
13094906 TATTTATATTA
1 TATTTATATTA
13094917 AAATTGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 3 0.12
17 12 0.48
18 8 0.32
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (16 bp):
TATTTATATTATTGAA
Found at i:13095278 original size:5 final size:5
Alignment explanation
Indices: 13095261--13095291 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
13095251 CTCGAAAATT
*
13095261 TTCGA TTCAA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
13095292 CGAATGCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:13106558 original size:14 final size:14
Alignment explanation
Indices: 13106541--13106573 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
13106531 GGAGGACCGA
13106541 AGGTGGATCGGTGG
1 AGGTGGATCGGTGG
*
13106555 AGGTGGATTGGTGG
1 AGGTGGATCGGTGG
13106569 AGGTG
1 AGGTG
13106574 AAGGTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.58, T:0.24
Consensus pattern (14 bp):
AGGTGGATCGGTGG
Found at i:13108452 original size:13 final size:13
Alignment explanation
Indices: 13108434--13108459 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13108424 GTGACACTAG
13108434 GATGTTCTAACGA
1 GATGTTCTAACGA
13108447 GATGTTCTAACGA
1 GATGTTCTAACGA
13108460 ATCATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GATGTTCTAACGA
Found at i:13113300 original size:24 final size:24
Alignment explanation
Indices: 13113273--13113321 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
13113263 CAAAGGATAA
13113273 ACCTGAACTGACTATCCTTTTCAC
1 ACCTGAACTGACTATCCTTTTCAC
13113297 ACCTGAACTGACTATCCTTTTCAC
1 ACCTGAACTGACTATCCTTTTCAC
13113321 A
1 A
13113322 TCCTTAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.08, T:0.33
Consensus pattern (24 bp):
ACCTGAACTGACTATCCTTTTCAC
Found at i:13132649 original size:19 final size:19
Alignment explanation
Indices: 13132621--13132684 Score: 92
Period size: 19 Copynumber: 3.3 Consensus size: 19
13132611 AATTTTCGAG
*
13132621 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13132640 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13132659 GATATATGCGATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
13132680 GATAT
1 GATAT
13132685 ATACAATCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 23 0.56
21 18 0.44
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13132703 original size:19 final size:21
Alignment explanation
Indices: 13132622--13132697 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
13132612 ATTTTCGAGG
13132622 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
13132641 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
* *
13132662 ATATGCGATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
13132683 ATATACAATCTTAGA
1 ATATACAATCTTAGA
13132698 AGATATGATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 18 0.35
21 33 0.65
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:13132733 original size:21 final size:23
Alignment explanation
Indices: 13132689--13132733 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
13132679 TGATATATAC
*
13132689 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
13132712 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
13132733 A
1 A
13132734 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:13142527 original size:22 final size:21
Alignment explanation
Indices: 13142497--13142567 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
13142487 GCATTGTCCT
13142497 CAATGCACTAACATTAAAATG
1 CAATGCACTAACATTAAAATG
* *
13142518 AAATG-AC--AC-TAAAAATG
1 CAATGCACTAACATTAAAATG
13142535 CAATGCACTAACATTAAAATG
1 CAATGCACTAACATTAAAATG
13142556 CAATGACACTAA
1 CAATG-CACTAA
13142568 AAATGTAATG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
17 11 0.27
18 4 0.10
20 4 0.10
21 16 0.39
22 6 0.15
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (21 bp):
CAATGCACTAACATTAAAATG
Found at i:13142548 original size:38 final size:38
Alignment explanation
Indices: 13142497--13142577 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
13142487 GCATTGTCCT
13142497 CAATGCACTAACATTAAAATGAAATGACACTAAAAATG
1 CAATGCACTAACATTAAAATGAAATGACACTAAAAATG
*
13142535 CAATGCACTAACATTAAAATGCAATGACACTAAAAATG
1 CAATGCACTAACATTAAAATGAAATGACACTAAAAATG
*
13142573 TAATG
1 CAATG
13142578 AAAATGTGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.22
Consensus pattern (38 bp):
CAATGCACTAACATTAAAATGAAATGACACTAAAAATG
Found at i:13153594 original size:28 final size:28
Alignment explanation
Indices: 13153531--13153628 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
13153521 TTATTAAGTC
*
13153531 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
13153558 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
13153586 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
13153615 CGCACACTTAGTGC
1 CGCACACTTAGTGC
13153629 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:13160114 original size:18 final size:18
Alignment explanation
Indices: 13160091--13160137 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
13160081 AAAGTGCACT
*
13160091 TTAATTATTTTGTAAATA
1 TTAATTATTTTGTAAAAA
13160109 TTAATTATTTTGTAAAAA
1 TTAATTATTTTGTAAAAA
13160127 TTAATTATTTT
1 TTAATTATTTT
13160138 TTTGACAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
TTAATTATTTTGTAAAAA
Found at i:13163131 original size:18 final size:18
Alignment explanation
Indices: 13163108--13163142 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13163098 GCTAGCTCCT
13163108 AACTCGCATAAAGCCTTA
1 AACTCGCATAAAGCCTTA
*
13163126 AACTCGCATAAATCCTT
1 AACTCGCATAAAGCCTT
13163143 GAACATGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.29, G:0.09, T:0.26
Consensus pattern (18 bp):
AACTCGCATAAAGCCTTA
Found at i:13166700 original size:317 final size:317
Alignment explanation
Indices: 13166116--13166732 Score: 1171
Period size: 317 Copynumber: 1.9 Consensus size: 317
13166106 AAAATTATTT
* * *
13166116 TAATATTATTTTATGATCTGTAGCATGATAGTATTATCGTATAAAAATTTTGTTGAGAAATTTTA
1 TAATAATAATTTATGATCTGTAGCATGATAGTATTATCGTATAAAAATTTTGTTAAGAAATTTTA
13166181 CCGATTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAGTTGTGTTCTAAT
66 CCGATTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAGTTGTGTTCTAAT
* *
13166246 AGATAAAGGTGTCTAATAGCTATAGAAATTTAAATTGGAGGTTCTTATATGGTAAATAGCCCATT
131 AGATAAAGGTGTCTAAGAGCTATAGAAATTTAAATTGGAGGTTCTTACATGGTAAATAGCCCATT
13166311 AAAGAGATAGTGGATTATGATGACTTGGCATTTTGTGTAATAAATAATGTTTATAAAGGTTAATT
196 AAAGAGATAGTGGATTATGATGACTTGGCATTTTGTGTAATAAATAATGTTTATAAAGGTTAATT
13166376 TTGTAATTTAGTTAATAATGATATAATAAGTTAAAAAAAAATTTGTAATTTAGTTAA
261 TTGTAATTTAGTTAATAATGATATAATAAGTTAAAAAAAAATTTGTAATTTAGTTAA
13166433 TAATAATAATTTATGATCTGTAGCATGATAGTATTATCGTATAAAAATTTTGTTAAGAAATTTTA
1 TAATAATAATTTATGATCTGTAGCATGATAGTATTATCGTATAAAAATTTTGTTAAGAAATTTTA
*
13166498 CCGATTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCGAAAGTTGTGTTCTAAT
66 CCGATTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAGTTGTGTTCTAAT
*
13166563 AGCTAAAGGTGTCTAAGAGCTATAGAAATTTAAATTGGAGGTTCTTACATGGTAAATAGCCCATT
131 AGATAAAGGTGTCTAAGAGCTATAGAAATTTAAATTGGAGGTTCTTACATGGTAAATAGCCCATT
13166628 AAAGAGATAGTGGATTATGATGACTTGGCATTTTGTGTAATAAATAATGTTTATAAAGGTTAATT
196 AAAGAGATAGTGGATTATGATGACTTGGCATTTTGTGTAATAAATAATGTTTATAAAGGTTAATT
13166693 TTGTAATTTAGTTAATAATGATATAATAAGTTAAAAAAAA
261 TTGTAATTTAGTTAATAATGATATAATAAGTTAAAAAAAA
13166733 CAATTAAAAA
Statistics
Matches: 293, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
317 293 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (317 bp):
TAATAATAATTTATGATCTGTAGCATGATAGTATTATCGTATAAAAATTTTGTTAAGAAATTTTA
CCGATTACATGCTCAATTTGATAAAAAGGACTAAATCACGTAAAGTGCAAAAGTTGTGTTCTAAT
AGATAAAGGTGTCTAAGAGCTATAGAAATTTAAATTGGAGGTTCTTACATGGTAAATAGCCCATT
AAAGAGATAGTGGATTATGATGACTTGGCATTTTGTGTAATAAATAATGTTTATAAAGGTTAATT
TTGTAATTTAGTTAATAATGATATAATAAGTTAAAAAAAAATTTGTAATTTAGTTAA
Found at i:13167537 original size:45 final size:45
Alignment explanation
Indices: 13167465--13167555 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
13167455 TAATTGCCAT
* *
13167465 GAATGAATATCGATTGCTTATCTAACGACGTACGATGACTACCGA
1 GAATGAATATCGATTGCTTATCGAACGACGTACGACGACTACCGA
* *
13167510 GAATGAATATCGATTGCTTGTCGAACGACGTACGACGATTACCGA
1 GAATGAATATCGATTGCTTATCGAACGACGTACGACGACTACCGA
13167555 G
1 G
13167556 CCCCGTTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (45 bp):
GAATGAATATCGATTGCTTATCGAACGACGTACGACGACTACCGA
Found at i:13167652 original size:25 final size:25
Alignment explanation
Indices: 13167615--13167721 Score: 108
Period size: 25 Copynumber: 4.3 Consensus size: 25
13167605 GGTTATCGAT
* * *
13167615 TTCAGCTCTTATGAGCATACTGATA
1 TTCAGCTCGTATGAGCTTACTGTTA
* *
13167640 CTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACTGTTA
* *
13167665 TTCAGCTCGAAGGAGCTTACTGTTA
1 TTCAGCTCGTATGAGCTTACTGTTA
* **
13167690 TTCAGCTCAG-AGGATTTTACTGTTA
1 TTCAGCTC-GTATGAGCTTACTGTTA
13167715 TTCAGCT
1 TTCAGCT
13167722 TAGGGGAGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
25 69 0.99
26 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACTGTTA
Found at i:13167738 original size:25 final size:25
Alignment explanation
Indices: 13167652--13167738 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
13167642 CAGCTCGTAT
*
13167652 GAGCTTACCGTTATTCAGCTC-GAAG
1 GAGCTTACTGTTATTCAGCTCAG-AG
13167677 GAGCTTACTGTTATTCAGCTCAGAG
1 GAGCTTACTGTTATTCAGCTCAGAG
** * *
13167702 GATTTTACTGTTATTCAGCTTAGGG
1 GAGCTTACTGTTATTCAGCTCAGAG
*
13167727 GAGCTTATTGTT
1 GAGCTTACTGTT
13167739 TATAGCTTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 52 0.98
26 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (25 bp):
GAGCTTACTGTTATTCAGCTCAGAG
Found at i:13195453 original size:14 final size:14
Alignment explanation
Indices: 13195415--13195457 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
13195405 TAAAATGTAC
13195415 AATATAATTAAA-T
1 AATATAATTAAATT
13195428 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
13195443 AA-ATAATTTAATT
1 AATATAATTAAATT
13195456 AA
1 AA
13195458 CTGTTTACCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:13197950 original size:3 final size:3
Alignment explanation
Indices: 13197944--13197970 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
13197934 AATAATAATA
13197944 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
13197971 GTATTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:13201735 original size:162 final size:160
Alignment explanation
Indices: 13201447--13201770 Score: 411
Period size: 162 Copynumber: 2.0 Consensus size: 160
13201437 AGTGCTAAAA
* * * *
13201447 TTATGCTTTTAATGATTAAATTGATATTTAAGCTTTCTGGCCACCTTTTTTAAATTTTTAAATAA
1 TTATACTTTTAATGATTAAATTGATATTTAAACTTTCTGGCCACCTTATTTAAATTGTTAAATAA
* *
13201512 GCAATAAAGGTGGCCGAATCAAGTACGTTTTGAGCCTAACGAATTAGCATGAATACAAAACTAGT
66 GCAATAAAGGTGGCCGAATCAAGTACGTTTCGACCCTAACGAATTAGCATGAATACAAAACTAGT
*
13201577 AT-GATTGACAAAATACTTGTATGCTGATAT
131 ATAG-TTGACAAAATAATTGTATGCTGATAT
**** *
13201607 TTATACTTTTAATGATTAAATTGATATTTAAACTTGT-TGGTTGGCTTATTTCAATTGTTAAATA
1 TTATACTTTTAATGATTAAATTGATATTTAAACTT-TCTGGCCACCTTATTTAAATTGTTAAATA
* * * *
13201671 AGCGATTTAAAGGTGGCCGAATTAGGTTA-GTTTCGACCCTAACTAATTAGCATGAATACAAAAC
65 AGC-A-ATAAAGGTGGCCGAATCAAG-TACGTTTCGACCCTAACGAATTAGCATGAATACAAAAC
** *
13201735 TAGTATAGTTGACCGAATAATTGTATGTTGATAT
127 TAGTATAGTTGACAAAATAATTGTATGCTGATAT
13201769 TT
1 TT
13201771 GTGTGATTCA
Statistics
Matches: 140, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
160 56 0.40
161 2 0.01
162 79 0.56
163 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (160 bp):
TTATACTTTTAATGATTAAATTGATATTTAAACTTTCTGGCCACCTTATTTAAATTGTTAAATAA
GCAATAAAGGTGGCCGAATCAAGTACGTTTCGACCCTAACGAATTAGCATGAATACAAAACTAGT
ATAGTTGACAAAATAATTGTATGCTGATAT
Found at i:13206476 original size:27 final size:27
Alignment explanation
Indices: 13206365--13206494 Score: 138
Period size: 27 Copynumber: 4.8 Consensus size: 27
13206355 AAAAGGAGCT
*
13206365 TTTGTGGCAATCTATGAAATGGAAGCC
1 TTTGTGGCAATCTGTGAAATGGAAGCC
* * *
13206392 TTTATGGAAAT-TGATGAAATGGAAGGC
1 TTTGTGGCAATCTG-TGAAATGGAAGCC
* * *
13206419 TTTATGGAAATCTGTGAAATGGAAGGC
1 TTTGTGGCAATCTGTGAAATGGAAGCC
13206446 TTTGTGGCAATCTGTGAAATAGG-AGCC
1 TTTGTGGCAATCTGTGAAAT-GGAAGCC
* *
13206473 TTTGTGGCGATCTATGGAAATG
1 TTTGTGGCAATCTGT-GAAATG
13206495 AATGTCTTCG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
26 1 0.01
27 80 0.89
28 9 0.10
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (27 bp):
TTTGTGGCAATCTGTGAAATGGAAGCC
Found at i:13209991 original size:20 final size:20
Alignment explanation
Indices: 13209966--13210006 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
13209956 ATGAAGAACC
13209966 TAGTGTAAGGAAATCTAGTA
1 TAGTGTAAGGAAATCTAGTA
13209986 TAGTGTAAGGAAATCTAGTA
1 TAGTGTAAGGAAATCTAGTA
13210006 T
1 T
13210007 TCTAATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (20 bp):
TAGTGTAAGGAAATCTAGTA
Found at i:13210454 original size:44 final size:44
Alignment explanation
Indices: 13210391--13210482 Score: 175
Period size: 44 Copynumber: 2.1 Consensus size: 44
13210381 CATGCTAAGC
*
13210391 TTAAAAAAAAGGAAAACCAATATAATTAACATCTTTATCATATA
1 TTAAAAAAAAGGAAAACCAATATAATTAACAGCTTTATCATATA
13210435 TTAAAAAAAAGGAAAACCAATATAATTAACAGCTTTATCATATA
1 TTAAAAAAAAGGAAAACCAATATAATTAACAGCTTTATCATATA
13210479 TTAA
1 TTAA
13210483 CATAATAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.29
Consensus pattern (44 bp):
TTAAAAAAAAGGAAAACCAATATAATTAACAGCTTTATCATATA
Found at i:13222983 original size:26 final size:26
Alignment explanation
Indices: 13222952--13223016 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
13222942 ATAAGAGCCA
* *
13222952 TAATCAGGAAGTTTACAAAGAACCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
* *
13222978 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
13223004 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
13223017 TGAATAGCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
25 5 0.14
26 30 0.86
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:13239330 original size:13 final size:12
Alignment explanation
Indices: 13239309--13239364 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
13239299 ATAATTTTGG
*
13239309 TTTCTATTTTCAT
1 TTTCCATTTT-AT
*
13239322 TTTCAATTTTAT
1 TTTCCATTTTAT
13239334 CTTTCCATTTTATT
1 -TTTCCATTTTA-T
*
13239348 TTTCCATTTCAT
1 TTTCCATTTTAT
13239360 TTTCC
1 TTTCC
13239365 CCTATTAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 8 0.21
13 29 0.76
14 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTCCATTTTAT
Found at i:13240607 original size:20 final size:21
Alignment explanation
Indices: 13240569--13240608 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
13240559 ATTCTAATTG
* *
13240569 TTTATGTTTTATTATTATTAT
1 TTTATGTTTTACTAATATTAT
13240590 TTTAT-TTTTACTAATATTA
1 TTTATGTTTTACTAATATTA
13240609 GTACATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTATGTTTTACTAATATTAT
Found at i:13243736 original size:48 final size:48
Alignment explanation
Indices: 13243665--13243765 Score: 157
Period size: 48 Copynumber: 2.1 Consensus size: 48
13243655 CAGTGTCGCG
*
13243665 ACATCGAAGGCAGTTTTGTACTTTCTCCATTATGTTCTCTATGTTGCA
1 ACATCGAAGGCAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
* ** *
13243713 ACATCGAAGGTAGTTTCGTACTTTCTTTATTATGTTCTCTATGTTGCG
1 ACATCGAAGGCAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
13243761 ACATC
1 ACATC
13243766 AGACTTCCCG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.43
Consensus pattern (48 bp):
ACATCGAAGGCAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
Found at i:13250385 original size:23 final size:23
Alignment explanation
Indices: 13250358--13250430 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 23
13250348 AAAATAAATC
*
13250358 AAAATTAATCAAAATTTAATTAT
1 AAAATTAATTAAAATTTAATTAT
13250381 AAAATTAATTAAAATTTGACATGT-T
1 AAAATTAATTAAAATTT-A-AT-TAT
13250406 AATAATTTAATTAAAATTTAATTAT
1 AA-AA-TTAATTAAAATTTAATTAT
13250431 TTTATAATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
23 16 0.37
24 2 0.05
25 8 0.19
26 4 0.09
27 13 0.30
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (23 bp):
AAAATTAATTAAAATTTAATTAT
Found at i:13250437 original size:27 final size:27
Alignment explanation
Indices: 13250362--13250439 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
13250352 TAAATCAAAA
* *
13250362 TTAATCAAAATTTAATTA---TA-AAA
1 TTAATTAAAATTTAATTATTTTATAAT
* * *
13250385 TTAATTAAAATTTGA-CATGTTAATAAT
1 TTAATTAAAATTTAATTAT-TTTATAAT
13250412 TTAATTAAAATTTAATTATTTTATAAT
1 TTAATTAAAATTTAATTATTTTATAAT
13250439 T
1 T
13250440 ATTATATATT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
22 1 0.02
23 13 0.32
26 1 0.02
27 24 0.59
28 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (27 bp):
TTAATTAAAATTTAATTATTTTATAAT
Found at i:13251973 original size:15 final size:15
Alignment explanation
Indices: 13251931--13251963 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
13251921 TTTAATATAT
13251931 TATTAATT-TTATTA
1 TATTAATTATTATTA
13251945 TATTAATTATTATTA
1 TATTAATTATTATTA
13251960 TATT
1 TATT
13251964 GTATATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTAATTATTATTA
Found at i:13252100 original size:38 final size:37
Alignment explanation
Indices: 13252057--13252144 Score: 103
Period size: 38 Copynumber: 2.4 Consensus size: 37
13252047 ATGTAGTACG
13252057 TATATATTTTAT-TATCATATCATATTATTTT-T-ATAGTT
1 TATATATTTTATGTA-CAT-TCATATT-TTTTATGATA-TT
13252095 TATATATTTTATGTACATTCATATTTTTTATGATATT
1 TATATATTTTATGTACATTCATATTTTTTATGATATT
*
13252132 TATAT-TTTCATGT
1 TATATATTTTATGT
13252145 TTTATAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
36 11 0.24
37 15 0.33
38 18 0.39
39 2 0.04
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.60
Consensus pattern (37 bp):
TATATATTTTATGTACATTCATATTTTTTATGATATT
Found at i:13252136 original size:18 final size:18
Alignment explanation
Indices: 13252059--13252139 Score: 60
Period size: 18 Copynumber: 4.4 Consensus size: 18
13252049 GTAGTACGTA
*
13252059 TATATTTTATTATCATA-T
1 TATATTTT-TTATGATATT
*
13252077 CATATTATTTT-T-ATAGTT
1 TATATT-TTTTATGATA-TT
* *
13252095 TATATATTTTATGTACATT
1 TATATTTTTTATG-ATATT
*
13252114 CATATTTTTTATGATATT
1 TATATTTTTTATGATATT
13252132 TATATTTT
1 TATATTTT
13252140 CATGTTTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
16 3 0.06
17 5 0.10
18 24 0.49
19 15 0.31
20 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.62
Consensus pattern (18 bp):
TATATTTTTTATGATATT
Found at i:13256007 original size:34 final size:34
Alignment explanation
Indices: 13255952--13256017 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
13255942 CAAACACCAG
*
13255952 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
*
13255987 AAAACATTTTCCCG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
13256018 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:13258732 original size:92 final size:92
Alignment explanation
Indices: 13258568--13258757 Score: 256
Period size: 92 Copynumber: 2.1 Consensus size: 92
13258558 TGATAATACT
* * * * * *
13258568 AGGTATCATAATAAAACACATATTGATAGTTCAGGTACCATATTGGACATTTTCAAAGTATAGGT
1 AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
*
13258633 ATCACATTGGATATTTTATGAAAGCAC
66 ATCACATTGAATATTTTATGAAAGCAC
* *
13258660 AGGTACCATAAGAAAACACATACTGATGGTTCAGATACCACATTGGACATTTTCAAAGTACATGT
1 AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
* *
13258725 A-CTACATTGAATATTTTATTAAAGTAC
66 ATC-ACATTGAATATTTTATGAAAGCAC
*
13258752 AAGTAC
1 AGGTAC
13258758 TAAATGCAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 1 0.01
92 84 0.99
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (92 bp):
AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
ATCACATTGAATATTTTATGAAAGCAC
Found at i:13258741 original size:29 final size:31
Alignment explanation
Indices: 13258699--13258759 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
13258689 TTCAGATACC
* *
13258699 ACATTGGACA-TTT-TCAAAGTACATGTACT
1 ACATTGAACATTTTATCAAAGTACAAGTACT
* *
13258728 ACATTGAATATTTTATTAAAGTACAAGTACT
1 ACATTGAACATTTTATCAAAGTACAAGTACT
13258759 A
1 A
13258760 AATGCAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 8 0.31
30 3 0.12
31 15 0.58
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.36
Consensus pattern (31 bp):
ACATTGAACATTTTATCAAAGTACAAGTACT
Found at i:13260649 original size:14 final size:13
Alignment explanation
Indices: 13260631--13260660 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13260621 TCTCAAAATT
*
13260631 ATTTTTTCAAAGC
1 ATTTTTTTAAAGC
13260644 ATTTTTTTAAAGC
1 ATTTTTTTAAAGC
13260657 ATTT
1 ATTT
13260661 CTCAAAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (13 bp):
ATTTTTTTAAAGC
Found at i:13263103 original size:30 final size:30
Alignment explanation
Indices: 13263067--13263134 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
13263057 TACCATGTAG
* *
13263067 GTTCTCCTTTTGGTTTCACCTAGGCATATA
1 GTTCTCCTTTCGATTTCACCTAGGCATATA
*
13263097 GTTCTCCTTTCGATTTTACCTAGGCATATA
1 GTTCTCCTTTCGATTTCACCTAGGCATATA
*
13263127 GATCTCCT
1 GTTCTCCT
13263135 CTTAGTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.43
Consensus pattern (30 bp):
GTTCTCCTTTCGATTTCACCTAGGCATATA
Found at i:13264533 original size:51 final size:51
Alignment explanation
Indices: 13264457--13264629 Score: 224
Period size: 51 Copynumber: 3.4 Consensus size: 51
13264447 ATTAAACATT
*
13264457 TCTCACATGGTCTTACACCTCATATCATATATGTAAATGACATGAAGCCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTAAATGACATGAAGCCTC
** *
13264508 TCTCACATGGTCTTATACCTCATATCATATATGTGGATGCCATGCAA-CCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTAAATGACATG-AAGCCTC
* * * **
13264559 TCTCACATGGTCTTATACCTCATA-CGATATCTGTATATGTCATGGTGCCTC
1 TCTCACATGGTCTTATACCTCATATC-ATATATGTAAATGACATGAAGCCTC
*
13264610 TCTTACATGGTCTTATACCT
1 TCTCACATGGTCTTATACCT
13264630 TATTTTCACA
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
50 1 0.01
51 105 0.97
52 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.35
Consensus pattern (51 bp):
TCTCACATGGTCTTATACCTCATATCATATATGTAAATGACATGAAGCCTC
Found at i:13264618 original size:102 final size:102
Alignment explanation
Indices: 13264439--13264629 Score: 267
Period size: 102 Copynumber: 1.9 Consensus size: 102
13264429 ACTAACACAA
* *
13264439 TGGATGCCATTAAACATTTCTCACATGGTCTTACACCTCATATCATATATGTAAATGACATGAAG
1 TGGATGCCATGAAACATCTCTCACATGGTCTTACACCTCATATCATATATGTAAATGACATGAAG
13264504 CCTCTCTCACATGGTCTTATACCTCATATCATATATG
66 CCTCTCTCACATGGTCTTATACCTCATATCATATATG
* * * * * * **
13264541 TGGATGCCATGCAACCTCTCTCACATGGTCTTATACCTCATA-CGATATCTGTATATGTCATGGT
1 TGGATGCCATGAAACATCTCTCACATGGTCTTACACCTCATATC-ATATATGTAAATGACATGAA
*
13264605 GCCTCTCTTACATGGTCTTATACCT
65 GCCTCTCTCACATGGTCTTATACCT
13264630 TATTTTCACA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 1 0.01
102 76 0.99
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (102 bp):
TGGATGCCATGAAACATCTCTCACATGGTCTTACACCTCATATCATATATGTAAATGACATGAAG
CCTCTCTCACATGGTCTTATACCTCATATCATATATG
Found at i:13273881 original size:19 final size:19
Alignment explanation
Indices: 13273829--13273897 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
13273819 AATCTTCAAG
*
13273829 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
*
13273848 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13273867 GATATACAATCTTAGA-A-
1 GATATGCAATCTTAGATAT
13273884 GATATG--ATCTTAGA
1 GATATGCAATCTTAGA
13273898 GATTTAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
15 8 0.18
17 5 0.11
18 1 0.02
19 31 0.69
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13274272 original size:229 final size:229
Alignment explanation
Indices: 13273871--13274325 Score: 901
Period size: 229 Copynumber: 2.0 Consensus size: 229
13273861 AGATATGATA
*
13273871 TACAATCTTAGAAGATATGATCTTAGAGATTTAATTTGTAGATACCTTTTAATCTTAGCCGTTGA
1 TACAATCTTAGAAGATATGATCTTAGAGATTTAATTTATAGATACCTTTTAATCTTAGCCGTTGA
13273936 TGTAATTAATCTGTACCGTTGGATTTTGGGAGGCTCAACTATAAATAGATGCCTCTCCCTTCATT
66 TGTAATTAATCTGTACCGTTGGATTTTGGGAGGCTCAACTATAAATAGATGCCTCTCCCTTCATT
13274001 GTAAAGGACGGAAGTGGGGAGTAATAATAATTCTTAAGAGTATTTACTCAAATTTCTCTCTCTCT
131 GTAAAGGACGGAAGTGGGGAGTAATAATAATTCTTAAGAGTATTTACTCAAATTTCTCTCTCTCT
13274066 TGCGTTCTTATTTTGTTGATTTGTGTATAATTTT
196 TGCGTTCTTATTTTGTTGATTTGTGTATAATTTT
13274100 TACAATCTTAGAAGATATGATCTTAGAGATTTAATTTATAGATACCTTTTAATCTTAGCCGTTGA
1 TACAATCTTAGAAGATATGATCTTAGAGATTTAATTTATAGATACCTTTTAATCTTAGCCGTTGA
13274165 TGTAATTAATCTGTACCGTTGGATTTTGGGAGGCTCAACTATAAATAGATGCCTCTCCCTTCATT
66 TGTAATTAATCTGTACCGTTGGATTTTGGGAGGCTCAACTATAAATAGATGCCTCTCCCTTCATT
13274230 GTAAAGGACGGAAGTGGGGAGTAATAATAATTCTTAAGAGTATTTACTCAAATTTCTCTCTCTCT
131 GTAAAGGACGGAAGTGGGGAGTAATAATAATTCTTAAGAGTATTTACTCAAATTTCTCTCTCTCT
13274295 TGCGTTCTTATTTTGTTGATTTGTGTATAAT
196 TGCGTTCTTATTTTGTTGATTTGTGTATAAT
13274326 ATATTTATTG
Statistics
Matches: 225, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 225 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (229 bp):
TACAATCTTAGAAGATATGATCTTAGAGATTTAATTTATAGATACCTTTTAATCTTAGCCGTTGA
TGTAATTAATCTGTACCGTTGGATTTTGGGAGGCTCAACTATAAATAGATGCCTCTCCCTTCATT
GTAAAGGACGGAAGTGGGGAGTAATAATAATTCTTAAGAGTATTTACTCAAATTTCTCTCTCTCT
TGCGTTCTTATTTTGTTGATTTGTGTATAATTTT
Found at i:13274584 original size:3 final size:3
Alignment explanation
Indices: 13274576--13274614 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
13274566 ATCTTGTATC
*
13274576 ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT AT
13274615 ATTCATGCGC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:13274598 original size:16 final size:16
Alignment explanation
Indices: 13274577--13274614 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
13274567 TCTTGTATCA
13274577 TTATTATTATTATTAT
1 TTATTATTATTATTAT
13274593 TTATTATTATTATTAT
1 TTATTATTATTATTAT
13274609 TT-TTAT
1 TTATTAT
13274615 ATTCATGCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTATTATTATTAT
Found at i:13274675 original size:23 final size:22
Alignment explanation
Indices: 13274644--13274703 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
13274634 TTTTATGTAA
*
13274644 TATATATATTGTTTTATATATAG
1 TATACATA-TGTTTTATATATAG
* **
13274667 TATACATATGCTTATATATATTT
1 TATACATATG-TTTTATATATAG
13274690 TATACATATGTTTT
1 TATACATATGTTTT
13274704 TATTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 5 0.16
23 26 0.84
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TATACATATGTTTTATATATAG
Found at i:13276141 original size:15 final size:15
Alignment explanation
Indices: 13276121--13276150 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
13276111 TTTCACTATA
13276121 ATGTCTTTTATATTT
1 ATGTCTTTTATATTT
13276136 ATGTCTTTTATATTT
1 ATGTCTTTTATATTT
13276151 TGCATGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (15 bp):
ATGTCTTTTATATTT
Found at i:13277826 original size:19 final size:19
Alignment explanation
Indices: 13277802--13277841 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
13277792 ATCTTAACAA
13277802 TATTTTATTAATTTACTAT
1 TATTTTATTAATTTACTAT
13277821 TATTTTATTAATTTACTAT
1 TATTTTATTAATTTACTAT
13277840 TA
1 TA
13277842 AAGTGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTATTAATTTACTAT
Found at i:13277827 original size:11 final size:11
Alignment explanation
Indices: 13277807--13277842 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
13277797 AACAATATTT
13277807 TATTAATTTAC
1 TATTAATTTAC
13277818 TATT-ATTT--
1 TATTAATTTAC
13277826 TATTAATTTAC
1 TATTAATTTAC
13277837 TATTAA
1 TATTAA
13277843 AGTGATTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.18
9 4 0.18
10 4 0.18
11 10 0.45
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTAATTTAC
Found at i:13278298 original size:9 final size:9
Alignment explanation
Indices: 13278284--13278314 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
13278274 GTTAAACGAA
13278284 TCGAGTTAT
1 TCGAGTTAT
*
13278293 TCGAGTTAA
1 TCGAGTTAT
13278302 TCGAGTTAT
1 TCGAGTTAT
13278311 TCGA
1 TCGA
13278315 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:13278392 original size:9 final size:9
Alignment explanation
Indices: 13278368--13278404 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13278358 TGAGTTTTTG
*
13278368 AATTCAAAT
1 AATTCGAAT
*
13278377 AACTCGAAT
1 AATTCGAAT
13278386 AATTCGAAT
1 AATTCGAAT
13278395 AATTCGAAT
1 AATTCGAAT
13278404 A
1 A
13278405 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13278652 original size:30 final size:31
Alignment explanation
Indices: 13278616--13278675 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
13278606 AAACCTTTTA
*
13278616 TTTTTCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
* *
13278646 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCA
13278676 TCCCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:13279330 original size:5 final size:5
Alignment explanation
Indices: 13279320--13279350 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
13279310 GAACAAATAT
13279320 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
13279351 ATTCCATCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (5 bp):
ATTCG
Found at i:13279450 original size:5 final size:5
Alignment explanation
Indices: 13279440--13279465 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13279430 CTCGAAAATT
13279440 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
13279466 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:13280185 original size:5 final size:5
Alignment explanation
Indices: 13280175--13280210 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
13280165 TTGTTTTCTC
* *
13280175 TCTTT TCTTT TCTTT TCATT TCTTT TCTCT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
13280211 AATTTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:13280200 original size:20 final size:20
Alignment explanation
Indices: 13280175--13280215 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
13280165 TTGTTTTCTC
* *
13280175 TCTTTTCTTTTCTTTTCATT
1 TCTTTTCTCTTCTTTTAATT
13280195 TCTTTTCTCTTCTTTTAATT
1 TCTTTTCTCTTCTTTTAATT
13280215 T
1 T
13280216 AAATAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTTTCTCTTCTTTTAATT
Found at i:13282208 original size:25 final size:26
Alignment explanation
Indices: 13282179--13282227 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
13282169 CAACAAAAAT
*
13282179 AAAATATATTC-TAAAAAGAAAAGGG
1 AAAATATAATCTTAAAAAGAAAAGGG
* *
13282204 AAAATCTAATCTTAAAATGAAAAG
1 AAAATATAATCTTAAAAAGAAAAG
13282228 AAAAGAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAATATAATCTTAAAAAGAAAAGGG
Found at i:13283486 original size:284 final size:282
Alignment explanation
Indices: 13283013--13283524 Score: 617
Period size: 284 Copynumber: 1.8 Consensus size: 282
13283003 CATTCATCTC
* *
13283013 TAAGACCCTTAAGGAATTTAAATTATATATAACCACATAATGTTTTAATTGAAAAATTAATGATA
1 TAAGACCCTTAAGGAATTTAAATTATATATAACCACATAATATTTTAATTGAAAAATTAACGATA
* *
13283078 TTAACTATTTGAACTAACTAATAACATTATGAAAATATAGGGATCAAATTATATTAGAAATTAAA
66 TTAACTATTTGAACTAACTAATAACATTATAAAAATATAGAGATCAAATTATATTAGAAATTAAA
* * * * * * * *** *
13283143 GTGATGCAGTTAAATTTTAAATTTGGGCATCATAAAGGGACCAAAATTGAAATTTAATCATTTTT
131 GTCATGAAATTAAATATTAAATTTAGACATCATAAAGAGACCAAAACAAAAATTTAATCATTTTG
13283208 CTAAAACTACAAAAAAGAAAAAAGAAAAGAAA-AGAGATAAGGTAAGACCTATGCAAACCTAAAA
196 CTAAAA-T-CAAAAAAG--AAAAGAAAAGAAAGAGAGATAAGGTAAGACCTATGCAAACCTAAAA
13283272 GAAATAGAAAACTACGAGTCAATTTT
257 GAAATAGAAAACTACGAGTCAATTTT
* * * *
13283298 TAAGACTCTTAAGGTATTTAAA-TATATATAA-CATCATAATATTTTAATTGAAAAGTTAGCGAT
1 TAAGACCCTTAAGGAATTTAAATTATATATAACCA-CATAATATTTTAATTGAAAAATTAACGAT
* * * * * *
13283361 ATTAACTATTT-AGACTAATTTATAATATTATAAAAATATTGAGA-CTAATTTATGTTA-AAAGT
65 ATTAACTATTTGA-ACTAACTAATAACATTATAAAAATATAGAGATC-AAATTATATTAGAAA-T
* *
13283423 TAAAGTACAT-AAATTAAATATTAAATTTAGACAT-ATTAGAGATACCAAAACAAAAATTTAATC
127 TAAAGT-CATGAAATTAAATATTAAATTTAGACATCA-TAAAGAGACCAAAACAAAAATTTAATC
* *
13283486 ATTTTGGTAAAATGAAAAAAGAAAAGAAAAGAAAGAGAG
190 ATTTTGCTAAAATCAAAAAAGAAAAGAAAAGAAAGAGAG
13283525 CATGGCTGGC
Statistics
Matches: 191, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
280 13 0.07
281 4 0.02
282 7 0.04
283 9 0.05
284 136 0.71
285 22 0.12
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (282 bp):
TAAGACCCTTAAGGAATTTAAATTATATATAACCACATAATATTTTAATTGAAAAATTAACGATA
TTAACTATTTGAACTAACTAATAACATTATAAAAATATAGAGATCAAATTATATTAGAAATTAAA
GTCATGAAATTAAATATTAAATTTAGACATCATAAAGAGACCAAAACAAAAATTTAATCATTTTG
CTAAAATCAAAAAAGAAAAGAAAAGAAAGAGAGATAAGGTAAGACCTATGCAAACCTAAAAGAAA
TAGAAAACTACGAGTCAATTTT
Found at i:13284161 original size:2 final size:2
Alignment explanation
Indices: 13284154--13284184 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13284144 CTTCATATGG
*
13284154 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13284185 GTGTTAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13285440 original size:62 final size:62
Alignment explanation
Indices: 13285369--13285493 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
13285359 AATATCATAG
* * *
13285369 AAAATTTCTTAAATTTAACTATTAATCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
1 AAAATTTCTTAAACTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
* * *
13285431 AAAATTTCTTAAACTAAACTATTAACCTAATGTCTTTATGCAAAAACTTTAAGAGCAAAGAT
1 AAAATTTCTTAAACTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
13285493 A
1 A
13285494 GAACGGCGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (62 bp):
AAAATTTCTTAAACTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
Found at i:13286009 original size:25 final size:26
Alignment explanation
Indices: 13285981--13286039 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
13285971 AACTAAATAT
*
13285981 ACTAGT-TTAAATATTTATTTAGGAA
1 ACTAGTGTTAAATAATTATTTAGGAA
*
13286006 ACTAGTTGTGTTAAATAATTATTTAGTAA
1 ACTA---GTGTTAAATAATTATTTAGGAA
13286035 ACTAG
1 ACTAG
13286040 ATGAAGTCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 4 0.14
26 1 0.04
28 2 0.07
29 21 0.75
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (26 bp):
ACTAGTGTTAAATAATTATTTAGGAA
Found at i:13289778 original size:15 final size:15
Alignment explanation
Indices: 13289760--13289794 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
13289750 TACAAATGCC
13289760 ACAATAATAAATACA
1 ACAATAATAAATACA
13289775 ACAATAATAAATACA
1 ACAATAATAAATACA
*
13289790 TCAAT
1 ACAAT
13289795 GGCATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.23
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:13290217 original size:30 final size:29
Alignment explanation
Indices: 13290172--13290238 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
13290162 ATATATACGA
* *
13290172 ATAAATACA-AAAAATATTTATTAAAAAA-
1 ATAAATATAGAAAAATATTCA-TAAAAAAT
13290200 ATGAAATATAGAAAAATATTCATAAAAAAT
1 AT-AAATATAGAAAAATATTCATAAAAAAT
13290230 ATAAATATA
1 ATAAATATA
13290239 TACATATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 2 0.06
29 20 0.59
30 12 0.35
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
ATAAATATAGAAAAATATTCATAAAAAAT
Found at i:13292361 original size:267 final size:267
Alignment explanation
Indices: 13291879--13292421 Score: 816
Period size: 267 Copynumber: 2.0 Consensus size: 267
13291869 ATTTGTCATC
* * * *
13291879 TGCAATGTCGGGGAAACAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAA
1 TGCAATGTCGAGGAAACAAGATTCACCATCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGAA
* *
13291944 GTAAGATTCACCGTTGTGGTTTCAATCTGCTCCACTGTAATGCTAAAGAGATAGAATTCGCTGCC
66 GTAAGATTCACCGTCGTGGTTTCAATCTGCTCCACCGTAATGCTAAAGAGATAGAATTCGCTGCC
* * *
13292009 CACAGCTTTAATCCGCTCCACTTTAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCG
131 CACAGCCTTAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCA
* * * * *
13292074 TCGTGGCTTCAATTTGCTCTGTTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGTCT
196 TCGTGACTTCAATCTGCTCTGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAATCT
13292139 TTTAAAT
261 TTTAAAT
* * * * * * *
13292146 TGCAATGTTGAGGAAACAAGATTCGCTATCGTAGCTTCAATCTGTTCCACTACACCGTCAGGGGA
1 TGCAATGTCGAGGAAACAAGATTCACCATCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGAA
* *
13292211 GTAAGATTCACCGTCGTGGTTTCAATCTGCTCGACCGTAATGCTAAAGAGATAGGATTCGCTGCC
66 GTAAGATTCACCGTCGTGGTTTCAATCTGCTCCACCGTAATGCTAAAGAGATAGAATTCGCTGCC
*
13292276 CACAGCCTTAATTCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCA
131 CACAGCCTTAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCA
* * * *
13292341 TCGTGACTTCAATCTGCTCTGCTACAATGCCAGGGAAATAAGATTCGCCGTTGTGGCTTCAATCT
196 TCGTGACTTCAATCTGCTCTGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAATCT
**
13292406 TTTCCAT
261 TTTAAAT
13292413 TGCAATGTC
1 TGCAATGTC
13292422 AAGGCGATAA
Statistics
Matches: 245, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
267 245 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (267 bp):
TGCAATGTCGAGGAAACAAGATTCACCATCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGAA
GTAAGATTCACCGTCGTGGTTTCAATCTGCTCCACCGTAATGCTAAAGAGATAGAATTCGCTGCC
CACAGCCTTAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCA
TCGTGACTTCAATCTGCTCTGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAATCT
TTTAAAT
Found at i:13308126 original size:58 final size:58
Alignment explanation
Indices: 13307990--13308134 Score: 236
Period size: 58 Copynumber: 2.5 Consensus size: 58
13307980 TGGTAATGGA
* * * *
13307990 GTAAGACCATGGATGAAAGACGCAATGGCAGTAAGGTAAAATGTCTAAGGTATACGGT
1 GTAAGACCATAGATGAAAGATGCAATGGTAGCAAGGTAAAATGTCTAAGGTATACGGT
*
13308048 GTAAGACCATAGATGAAAGATGCAATGGTGGCAAGGTAAAATGTCTAAGGTATACGGT
1 GTAAGACCATAGATGAAAGATGCAATGGTAGCAAGGTAAAATGTCTAAGGTATACGGT
*
13308106 GTAAGACCATAGATGAAAGATGCTATGGT
1 GTAAGACCATAGATGAAAGATGCAATGGT
13308135 TGTCGGTTAT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 81 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (58 bp):
GTAAGACCATAGATGAAAGATGCAATGGTAGCAAGGTAAAATGTCTAAGGTATACGGT
Found at i:13312256 original size:229 final size:229
Alignment explanation
Indices: 13311850--13312317 Score: 891
Period size: 229 Copynumber: 2.0 Consensus size: 229
13311840 CATCGTTAGG
* *
13311850 AAAAGAAAGAACCCGCCAATTGGGCAGAGTTGAAAGGAAAATGAGAATGTACAAGAAGGAACCAA
1 AAAATAAAGAACCCGCCAATTGGGCAGAGTTGAAAGGAAAATGAGAATGTACAAAAAGGAACCAA
13311915 GTTCGGGGAACTTGTAAGGATAAGGGACAGATGTGTACGTGAACCCTAAGAGGAAAAGAATAAGG
66 GTTCGGGGAACTTGTAAGGATAAGGGACAGATGTGTACGTGAACCCTAAGAGGAAAAGAATAAGG
13311980 AAGGGTTTCCTAAGTCTGCCTTTGAGGTTGGTGTGACATGAAGTTTCGAGAATGAAATTTATTTT
131 AAGGGTTTCCTAAGTCTGCCTTTGAGGTTGGTGTGACATGAAGTTTCGAGAATGAAATTTATTTT
13312045 TAAGGGGTGGAGTTGTAACACCCGATTTCCAACT
196 TAAGGGGTGGAGTTGTAACACCCGATTTCCAACT
13312079 AAAATAAAGAACCCGCCAATTGGGCAGAGTTGAAAGGAAAATGAGAATGTACAAAAAGGAACCAA
1 AAAATAAAGAACCCGCCAATTGGGCAGAGTTGAAAGGAAAATGAGAATGTACAAAAAGGAACCAA
13312144 GTTCGGGGAACTTGTAAGGATAAGGGACAGATGTGTACGTGAACCCTAAGAGGAAAAGAATAAGG
66 GTTCGGGGAACTTGTAAGGATAAGGGACAGATGTGTACGTGAACCCTAAGAGGAAAAGAATAAGG
*
13312209 AAGGGTTTCCTAAGTCTGCCTTTGAGGTTGGTGTGACATGAAGTTTCGAGAATGAAATTTCTTTT
131 AAGGGTTTCCTAAGTCTGCCTTTGAGGTTGGTGTGACATGAAGTTTCGAGAATGAAATTTATTTT
*
13312274 TAAGGGGTGGAGTTGTAACACTCGATTTCCAACT
196 TAAGGGGTGGAGTTGTAACACCCGATTTCCAACT
*
13312308 AAAATTAAGA
1 AAAATAAAGA
13312318 TTTATTAAAG
Statistics
Matches: 234, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 234 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (229 bp):
AAAATAAAGAACCCGCCAATTGGGCAGAGTTGAAAGGAAAATGAGAATGTACAAAAAGGAACCAA
GTTCGGGGAACTTGTAAGGATAAGGGACAGATGTGTACGTGAACCCTAAGAGGAAAAGAATAAGG
AAGGGTTTCCTAAGTCTGCCTTTGAGGTTGGTGTGACATGAAGTTTCGAGAATGAAATTTATTTT
TAAGGGGTGGAGTTGTAACACCCGATTTCCAACT
Found at i:13331073 original size:23 final size:22
Alignment explanation
Indices: 13331043--13331090 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
13331033 TTAATTTCCA
13331043 TTATTTATGTATATAA-ATTATT
1 TTATTTAT-TATATAATATTATT
*
13331065 TTATGTTATTATGTAATATTATT
1 TTAT-TTATTATATAATATTATT
13331088 TTA
1 TTA
13331091 GGTTTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (22 bp):
TTATTTATTATATAATATTATT
Found at i:13335784 original size:29 final size:29
Alignment explanation
Indices: 13335723--13335778 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
13335713 AATCTAATCC
** *
13335723 CAAAAAAAAAGAAAAATCAAGATCAAAAA
1 CAAAAAAAAAGAAAAAGAAAAATCAAAAA
*
13335752 CAAAAAAGAAGAAAAAGAAAAATCAAA
1 CAAAAAAAAAGAAAAAGAAAAATCAAA
13335779 GTCAAAGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.77, C:0.09, G:0.09, T:0.05
Consensus pattern (29 bp):
CAAAAAAAAAGAAAAAGAAAAATCAAAAA
Found at i:13336705 original size:13 final size:13
Alignment explanation
Indices: 13336675--13336705 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13336665 TTTGAGTAAA
13336675 AAAAATGAAAAAT
1 AAAAATGAAAAAT
*
13336688 GAAAATGAAAAAT
1 AAAAATGAAAAAT
13336701 AAAAA
1 AAAAA
13336706 AATGATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAAATGAAAAAT
Found at i:13338454 original size:129 final size:128
Alignment explanation
Indices: 13337963--13338581 Score: 945
Period size: 128 Copynumber: 4.8 Consensus size: 128
13337953 GTGAAATCAT
* * *
13337963 AAGTCTTATATCCCTGGTCAGCAATGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGTAG
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
* * *
13338028 TAGCGAAGCAGATCGAA-AGCGGCAAATCTTATCTTTAAGAGTAAGGAAGCAGATTTAAGCCAC
66 TAGCGGAGCAGATCGAAGA-CGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
13338091 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGTAG
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
* *
13338156 TAGTGGAGCAGATCGAA-AGCGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAC
66 TAGCGGAGCAGATCGAAGA-CGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* * *
13338219 AAGTTCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAGCAA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
* * *
13338284 TAGCAGAGCAGATCGAAGACAGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
66 TAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
13338347 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTTGGAAATTACATATATTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGG-TTGGAAATTACAGATCTTGTCTCCCTAAGCA
* *
13338412 GTAGCGGAGCAGATCGAAGACGGCTAATCTTATCTTCAAGTGTAAGGAAGAAGATTTAAGCCAC
65 GTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* * * * *
13338476 AAGTCCTATATCCCTGGTCAGTAGTGGAAAAGATTGGGAAATTATAGATATTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCA
* **
13338541 ATAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGT
65 GTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGT
13338582 TTGCGGTAGA
Statistics
Matches: 457, Mismatches: 31, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
128 274 0.60
129 183 0.40
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (128 bp):
AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
TAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
Found at i:13338935 original size:44 final size:44
Alignment explanation
Indices: 13338824--13338937 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
13338814 TCGCATCAGG
* *
13338824 TCTTATCTC-CCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAT
1 TCTTATCTCTCC-GAGGTTGCAGTGGAGCAGACCGAGAAAACAAA
* * * ** * *
13338868 TCTTATCCCTCTGAAGTCACAGTGGGGCAGACCGA-AGAAGCAAA
1 TCTTATCTCTCCGAGGTTGCAGTGGAGCAGACCGAGA-AAACAAA
13338912 TCTTATCTCTCCGAGGTTGCAGTGGA
1 TCTTATCTCTCCGAGGTTGCAGTGGA
13338938 ATAGATTGAA
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
43 1 0.02
44 51 0.96
45 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (44 bp):
TCTTATCTCTCCGAGGTTGCAGTGGAGCAGACCGAGAAAACAAA
Found at i:13338962 original size:217 final size:216
Alignment explanation
Indices: 13338567--13339023 Score: 607
Period size: 217 Copynumber: 2.1 Consensus size: 216
13338557 AAGACGGTGA
* *
13338567 ATCTTATCT-TC-AAGTTTGCGGTAGAGTGGATCGCATTAGCTCTTATCTCCCTGAGGTTGCAAC
1 ATCTTATCTCTCTAAG-TTGCAGTAGAGTGGATCGCATCAGCTCTTATCTCCCTGAGGTTGCAAC
* * * * ** * *
13338630 GGAGCAGACTGAGTAAATAGGTCTTATCTCTCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAA
65 GGAGCAGACTGAGAAAACAAGTCTTATCCCTCTGAAGTCACAGTGGGACAGACCGAAGATAGCAA
* * *
13338695 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGAAGAAGCCAATAATCCTATCTCCTTGAAGTTGTA
130 ATCTTATCTCCCTGAGGTTGCAGTGGAACAGAAGAAGCCAATAATCCTATCTCCCTGAAGTTCTA
*
13338760 GTGGAGCGGATTAAAATAATAG
195 GTGGAGCGGATTAAAACAATAG
* **
13338782 ATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGT
1 ATCTTATCTCTCT-AAGTTGCAGTAGAGTGGATCGCATCAGCTCTTATCTCCCTGAGGTTGCAAC
* *
13338847 GGAGCAGACTGAGAAAACAATTCTTATCCCTCTGAAGTCACAGTGGGGCAGACCGAAGA-AGCAA
65 GGAGCAGACTGAGAAAACAAGTCTTATCCCTCTGAAGTCACAGTGGGACAGACCGAAGATAGCAA
* * * *
13338911 ATCTTATCTCTCC-GAGGTTGCAGTGGAATAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTC
130 ATCTTATCTC-CCTGAGGTTGCAGTGGAACAGA-AGAAGCCAATAATCCTATCTCCCTGAAGTTC
* * *
13338975 TAGTGGAGTGGATTAAAACCATGG
193 TAGTGGAGCGGATTAAAACAATAG
13338999 ATCTTATCTCTCTAAAGTTGCAGTA
1 ATCTTATCTCTCT-AAGTTGCAGTA
13339024 CAACAGATTG
Statistics
Matches: 210, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
215 9 0.04
216 33 0.16
217 165 0.79
218 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (216 bp):
ATCTTATCTCTCTAAGTTGCAGTAGAGTGGATCGCATCAGCTCTTATCTCCCTGAGGTTGCAACG
GAGCAGACTGAGAAAACAAGTCTTATCCCTCTGAAGTCACAGTGGGACAGACCGAAGATAGCAAA
TCTTATCTCCCTGAGGTTGCAGTGGAACAGAAGAAGCCAATAATCCTATCTCCCTGAAGTTCTAG
TGGAGCGGATTAAAACAATAG
Found at i:13340099 original size:17 final size:16
Alignment explanation
Indices: 13340070--13340101 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
13340060 TTACCCCTTT
13340070 TTTATTTTTTTTATTA
1 TTTATTTTTTTTATTA
13340086 TTTATTTATTTTTATT
1 TTTATTT-TTTTTATT
13340102 TTTTGTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTATTTTTTTTATTA
Found at i:13340566 original size:11 final size:14
Alignment explanation
Indices: 13340533--13340571 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
13340523 TATTCAGTAA
13340533 TATTATTATTAATC
1 TATTATTATTAATC
*
13340547 TATTATTATTAATT
1 TATTATTATTAATC
*
13340561 TTTTATTATTA
1 TATTATTATTA
13340572 TCACCATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TATTATTATTAATC
Found at i:13341088 original size:277 final size:280
Alignment explanation
Indices: 13340550--13341402 Score: 1560
Period size: 277 Copynumber: 3.1 Consensus size: 280
13340540 ATTAATCTAT
13340550 TATTATTAATTTTTTATTATTATCACCATTATTACTACTGATATTATTATTGATATTGTTATTAT
1 TATT-TTAATTTTTT-TTATTATCA-CATTATTACTACTGATATTATTATTGATATTGTTATTAT
13340615 ATTAGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATAT
63 ATTAGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATAT
13340680 TATTTTAGGTTTTTAATA-TTTTATACAATATTATTTTATATCTATATACAACTTATATTAAATC
128 TATTTTAGGTTTTTAATATTTTTATACAATATTATTTTATA-CTATATACAACTTATATTAAATC
13340744 ATTTTATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATA
192 ATTTTATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATA
13340809 TATATAATTTATTTTTTAGGACCC
257 TATATAATTTATTTTTTAGGACCC
13340833 TATTTTAATTTTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATT
1 TATTTTAATTTTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATT
13340898 AGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTAT
66 AGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTAT
13340963 TTTAGGTTTTTAATATTTTTATACAATATTA-TTT-TA-TATATACAACTTATATTAAATCATTT
131 TTTAGGTTTTTAATATTTTTATACAATATTATTTTATACTATATACAACTTATATTAAATCATTT
13341025 TATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATA
196 TATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATA
*
13341090 AAATTTATTTTTTAGGACCC
261 TAATTTATTTTTTAGGACCC
13341110 TATTTTAA--TTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATT
1 TATTTTAATTTTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATT
13341173 AGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTAT
66 AGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTAT
* *
13341238 TTTAGGTTTTTAATATTTTTATCCAATACTATTTTATATCTATATACAACTTATATTAAATCATT
131 TTTAGGTTTTTAATATTTTTATACAATATTATTTTATA-CTATATACAACTTATATTAAATCATT
*
13341303 TTATTAAAACATATACGAGTATATAATATATTATTACATCATTTTATTTATCTATAC--ATATAT
195 TTATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATAT
13341366 ATAATTTATTTTTTAGGACCC
260 ATAATTTATTTTTTAGGACCC
*
13341387 TATTTTAATTTATTTT
1 TATTTTAATTTTTTTT
13341403 GTTTATTTCA
Statistics
Matches: 557, Mismatches: 6, Indels: 18
0.96 0.01 0.03
Matches are distributed among these distances:
275 149 0.27
276 3 0.01
277 154 0.28
279 88 0.16
280 125 0.22
281 24 0.04
282 10 0.02
283 4 0.01
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (280 bp):
TATTTTAATTTTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATT
AGTTTGTATATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTAT
TTTAGGTTTTTAATATTTTTATACAATATTATTTTATACTATATACAACTTATATTAAATCATTT
TATTAAAACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATA
TAATTTATTTTTTAGGACCC
Found at i:13341233 original size:275 final size:277
Alignment explanation
Indices: 13340561--13341397 Score: 1540
Period size: 275 Copynumber: 3.0 Consensus size: 277
13340551 ATTATTAATT
13340561 TTTTATTATTATCACCATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTA
1 TTTT-TTATTATCA-CATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTA
13340626 TATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTT
64 TATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTT
13340691 TTTAATA-TTTTATACAATATTATTTTATATCTATATACAACTTATATTAAATCATTTTATTAAA
129 TTTAATATTTTTATACAATATTATTTTATA-CTATATACAACTTATATTAAATCATTTTATTAAA
13340755 ACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATATAATTTA
193 ACATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATA-AATTTA
13340820 TTTTTTAGGACCCTATTTTAA
257 TTTTTTAGGACCCTATTTTAA
13340841 TTTTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTA
1 --TTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTA
13340906 TATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTT
64 TATTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTT
13340971 TTTAATATTTTTATACAATATTA-TTT-TA-TATATACAACTTATATTAAATCATTTTATTAAAA
129 TTTAATATTTTTATACAATATTATTTTATACTATATACAACTTATATTAAATCATTTTATTAAAA
13341033 CATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATAAAATTTAT
194 CATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATAT-AAATTTAT
13341098 TTTTTAGGACCCTATTTTAA
258 TTTTTAGGACCCTATTTTAA
13341118 TTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTATA
1 TTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTATA
13341183 TTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTTTT
66 TTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTTTT
* *
13341248 TAATATTTTTATCCAATACTATTTTATATCTATATACAACTTATATTAAATCATTTTATTAAAAC
131 TAATATTTTTATACAATATTATTTTATA-CTATATACAACTTATATTAAATCATTTTATTAAAAC
*
13341313 ATATACGAGTATATAATATATTATTACATCATTTTATTTATCTATACATATATAT-AATTTATTT
195 ATATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATAAATTTATTT
13341377 TTTAGGACCCTATTTTAA
260 TTTAGGACCCTATTTTAA
13341395 TTT
1 TTT
13341398 ATTTTGTTTA
Statistics
Matches: 546, Mismatches: 3, Indels: 17
0.96 0.01 0.03
Matches are distributed among these distances:
275 149 0.27
276 3 0.01
277 149 0.27
278 1 0.00
279 91 0.17
280 125 0.23
281 24 0.04
282 4 0.01
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.52
Consensus pattern (277 bp):
TTTTTTATTATCACATTATTACTACTGATATTATTATTGATATTGTTATTATATTAGTTTGTATA
TTTAATTGCCATTATTTACGTATATAAATTATTTTATGTTATTATGTAATATTATTTTAGGTTTT
TAATATTTTTATACAATATTATTTTATACTATATACAACTTATATTAAATCATTTTATTAAAACA
TATACGAGTATATAATACATTATTACATCATTTTATTTATCTATACATATATATAAATTTATTTT
TTAGGACCCTATTTTAA
Found at i:13346728 original size:13 final size:14
Alignment explanation
Indices: 13346710--13346738 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13346700 TCTTTTATCT
13346710 TTCTTTT-CTTTAA
1 TTCTTTTACTTTAA
13346723 TTCTTTTACTTTAA
1 TTCTTTTACTTTAA
13346737 TT
1 TT
13346739 ATAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTCTTTTACTTTAA
Found at i:13353860 original size:106 final size:106
Alignment explanation
Indices: 13353675--13353887 Score: 426
Period size: 106 Copynumber: 2.0 Consensus size: 106
13353665 AACCAAAAAA
13353675 TGAAAATAAAACATTTGGTCATACTGAACAAGTTGAGTTGTGAAATATTGAATATATTTTCTTGG
1 TGAAAATAAAACATTTGGTCATACTGAACAAGTTGAGTTGTGAAATATTGAATATATTTTCTTGG
13353740 AAATTTTACCATGGGTAAAATCATCATAATTTTACCATTGG
66 AAATTTTACCATGGGTAAAATCATCATAATTTTACCATTGG
13353781 TGAAAATAAAACATTTGGTCATACTGAACAAGTTGAGTTGTGAAATATTGAATATATTTTCTTGG
1 TGAAAATAAAACATTTGGTCATACTGAACAAGTTGAGTTGTGAAATATTGAATATATTTTCTTGG
13353846 AAATTTTACCATGGGTAAAATCATCATAATTTTACCATTGG
66 AAATTTTACCATGGGTAAAATCATCATAATTTTACCATTGG
13353887 T
1 T
13353888 TACATTGAGA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 107 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (106 bp):
TGAAAATAAAACATTTGGTCATACTGAACAAGTTGAGTTGTGAAATATTGAATATATTTTCTTGG
AAATTTTACCATGGGTAAAATCATCATAATTTTACCATTGG
Found at i:13356029 original size:50 final size:49
Alignment explanation
Indices: 13355966--13356194 Score: 216
Period size: 50 Copynumber: 4.7 Consensus size: 49
13355956 GGCAGTGAGT
* * *
13355966 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGACCGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGATGA
* * ** * *
13356016 GTGCTAGTTTAAGACCACATCTGGGACATGGCATCGGCACGGGCAGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAC-GATGA
* ** *
13356066 GAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCA-A-GATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGA
* * *
13356113 GTGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCACCGA-TAT-A
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGA
* * *
13356160 CGATCCCA-TGTAAGACCATATCTGGGATATGGCAT
1 -G-TGCCAGTGTAAGACCATGTCTGGGACATGGCAT
13356195 TAACGTCCTA
Statistics
Matches: 147, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
47 41 0.28
48 28 0.19
49 5 0.03
50 73 0.50
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (49 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGA
Found at i:13356149 original size:97 final size:99
Alignment explanation
Indices: 13355971--13356152 Score: 260
Period size: 97 Copynumber: 1.8 Consensus size: 99
13355961 TGAGTGTGCC
* *
13355971 AGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGACCGAGGAGTGCTAGTTTAAGACCACAT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGA-CGAGGAGTGCCAGTGTAAGACCACAT
*
13356036 CTGGGACATGGCATCGGCACGGGCAGATGAGAGTT
65 CTGGGACATGGAATCGGCACGGGCAGATGAGAGTT
* * * * **
13356071 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCA-A-GATGAGTGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGACGAGGAGTGCCAGTGTAAGACCACATC
13356134 TGGGACATGGAATCGGCAC
66 TGGGACATGGAATCGGCAC
13356153 CGATATACGA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
97 39 0.53
99 1 0.01
100 33 0.45
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (99 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGACGAGGAGTGCCAGTGTAAGACCACATC
TGGGACATGGAATCGGCACGGGCAGATGAGAGTT
Found at i:13357782 original size:141 final size:141
Alignment explanation
Indices: 13357528--13357783 Score: 485
Period size: 141 Copynumber: 1.8 Consensus size: 141
13357518 TAAGAAAAAT
* *
13357528 TGGATACATGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAAACC
1 TGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCAAAACC
*
13357593 ACATGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGATACA
66 ACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGATACA
13357658 TGTTGATGAAA
131 TGTTGATGAAA
13357669 TGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCAAAACC
1 TGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCAAAACC
13357734 ACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAA
66 ACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAA
13357784 GAGTTTCCAA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 112 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (141 bp):
TGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCAAAACC
ACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGATACA
TGTTGATGAAA
Found at i:13361978 original size:50 final size:50
Alignment explanation
Indices: 13361914--13362242 Score: 329
Period size: 50 Copynumber: 6.7 Consensus size: 50
13361904 TGAGTGTGCC
*
13361914 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* * *
13361964 AGTGTAAGAGCATGTCTAGGACATGGCATCGGTACAGACAGAGGAGA-G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA-ATGCT
* * * * *
13362013 CAGTGTAAGACCATGTCTGGGACATGGCATCTGCTC-G--AGATGAGTGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* * *
13362061 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGACCGAGGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
** * *
13362111 AGTGTAAGACCATGTCTGGGACATGTTATCGACAC-GAGCAAAGGAGA-G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CAGAGGA-ATGCT
* * * *
13362160 CAGTGTAAGACCATGTCTGGGACATGACATCGGCAC---CAGATGAGTGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* * *
13362208 AGTGTAAGATCATGTCTGGGACATTGAATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
13362243 CGATATACGA
Statistics
Matches: 231, Mismatches: 36, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
47 75 0.32
48 1 0.00
49 5 0.02
50 149 0.65
51 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
Done.